Psyllid ID: psy4251

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MYLVPTYLKQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGLPDSEWMWHYQY
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccccccccccEEEEccccccccccccccHHHHHHcHHHHHHcccEEEEEccHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEcccccccccccccccHHHHHHccccHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccccccccEEccccEEEEEcccHccccccccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHcccccEEEEccccccccccccccccEHHHHHcHHHHHHHHHHHHHHHHHccccccEEEEEEcHHHHcccEccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEccHHHHHHHHHHHHHHHHHHHHcHcccccccccccEEEEEEcccccccEEEEEEc
Coil and Loop (DISEMBL)
MYLVPTYLKQHLLNkllhpastyngCLAILctgdmefyprytglkkkdgnlcfdlvqsSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVfglgfshtedgfettFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSseshrysyitkdtisksVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSkkwwrfgtpvrtfswisrvrpvtnfqvdLTGTaekvglsglpdsewmwhyqy
Flexible Loop (DISEMBL)
MYLVPTYLKQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVsseshrysyitkdtisksvLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKItvskkwwrfgtpvrtfswisrvrpvtnfqvdltgtaekvglsglpdsewmwhyqy
Low Complexity Region (SEG)
MYLVPTYLKQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGLPDSEWMWHYQY
Disordered region (IsUnstruct)
*YLVPTYLKQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGLPDSEWMWHY**
Disordered Region (DISOPRED)
MYLVPTYLKQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGLPDSEWMWHYQY
Disordered Region (DISEMBL)
MYLVPTYLKQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGLPDSEWMWHYQY
Disordered Region (DISPRO)
MYLVPTYLKQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGLPDSEWMWHYQY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLVPTYLKQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGLPDSEWMWHYQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	292	2.2.26 [Sep-21-2011]
Q5F389	414	WW domain-containing oxid	yes	N/A	0.592	0.417	0.455	5e-33
Q9VLU5	409	WW domain-containing oxid	yes	N/A	0.678	0.484	0.398	1e-32
Q91WL8	414	WW domain-containing oxid	yes	N/A	0.5	0.352	0.509	1e-31
Q9NZC7	414	WW domain-containing oxid	yes	N/A	0.5	0.352	0.496	5e-31
Q5R9W5	414	WW domain-containing oxid	yes	N/A	0.5	0.352	0.496	1e-30
Q803A8	412	WW domain-containing oxid	yes	N/A	0.592	0.419	0.372	1e-20
A2RVM0	322	Short-chain dehydrogenase	no	N/A	0.469	0.425	0.381	7e-20
Q6RVV4	316	Short-chain dehydrogenase	N/A	N/A	0.493	0.455	0.390	2e-19
Q8BYK4	316	Retinol dehydrogenase 12	no	N/A	0.565	0.522	0.351	3e-15
Q96NR8	316	Retinol dehydrogenase 12	no	N/A	0.565	0.522	0.374	6e-15

>sp|Q5F389|WWOX_CHICK WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/180 (45%), Positives = 113/180 (62%), Gaps = 7/180 (3%)

Query: 69  KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
           + NDA+ +IL E   A+  AM LDL  L+SV+ FAE ++ K   L+ILV NA +FG  + 
Sbjct: 160 RGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWC 219

Query: 129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSV 188
            TEDG E+TFQVNHL HFYL   LE+ L + +   ARVVVVSSESHR++ I KD+  K  
Sbjct: 220 LTEDGLESTFQVNHLGHFYLVQLLEDILRRSSP--ARVVVVSSESHRFTEI-KDSSGKLD 276

Query: 189 LSVENYS--DFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI--TVSKKWW 244
            S+ + S  ++WAM AYN +KLCN+LF  +L      + +  +S H    I  ++ + WW
Sbjct: 277 FSLLSPSKKEYWAMLAYNRSKLCNILFSNELNRRLSPHGVTSNSVHPGNMIYSSIHRNWW 336

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9VLU5|WWOX_DROME WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 130/226 (57%), Gaps = 28/226 (12%)

Query: 70  ANDAISKILTEKPSAQ--CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           A  AI +I  E+P+A+  C    LDL  L+SV++F EE ++    ++ L+LNAGVF L +
Sbjct: 158 AEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPY 217

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLF---ARVVVVSSESHRYSYITKDTI 184
           + T DG ETTFQV+HL+HFYLTLQLE        LF    R++V+SSESHR++ +  + +
Sbjct: 218 TRTVDGLETTFQVSHLSHFYLTLQLET-------LFDYKTRIIVLSSESHRFANLPVENL 270

Query: 185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKIT--VSKK 242
           +   LS      +W+M AYN+ KLCNVLF ++LA  W +  I++ S H    ++  +S+ 
Sbjct: 271 AVHHLSPPP-EKYWSMMAYNNAKLCNVLFAQELAQRWKQRGISVFSLHPGNMVSSDLSRN 329

Query: 243 WWRFGTPVRTFSWISRVRPVTNFQVDLTGTA-------EKVGLSGL 281
           +W +    R    I  VRP T        T+       E  GLSGL
Sbjct: 330 YWFY----RLLFAI--VRPFTKSLQQAAATSIYCATANELTGLSGL 369

Putative oxidoreductase. May control genotoxic stress-induced cell death. May play a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. May play a role in Wnt signaling.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q91WL8|WWOX_MOUSE WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/151 (50%), Positives = 103/151 (68%), Gaps = 5/151 (3%)

Query: 69  KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
           +A++A+S+IL E   A+  AM LDL  L+SV+ FAE ++ K  SL++LV NAG F L + 
Sbjct: 160 RASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWG 219

Query: 129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSV 188
            T+DG ETTFQVNHL HFYL   L++ L + +   ARV+VVSSESHR++ I  D+  K  
Sbjct: 220 LTKDGLETTFQVNHLGHFYLVQLLQDVLCRSSP--ARVIVVSSESHRFTDI-NDSSGKLD 276

Query: 189 LS--VENYSDFWAMTAYNDTKLCNVLFGEKL 217
           LS      SD+WAM AYN +KLCN+LF  +L
Sbjct: 277 LSRLSPPRSDYWAMLAYNRSKLCNILFSNEL 307

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm (By similarity). May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9NZC7|WWOX_HUMAN WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1

 Score =  135 bits (339), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/151 (49%), Positives = 102/151 (67%), Gaps = 5/151 (3%)

Query: 69  KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
           +A++A+S+IL E   A+  AM LDL  L+SV+ FAE ++ K   L++LV NA  F L +S
Sbjct: 160 RASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWS 219

Query: 129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSV 188
            T+DG ETTFQVNHL HFYL   L++ L + A   ARV+VVSSESHR++ I  D++ K  
Sbjct: 220 LTKDGLETTFQVNHLGHFYLVQLLQDVLCRSAP--ARVIVVSSESHRFTDI-NDSLGKLD 276

Query: 189 LS--VENYSDFWAMTAYNDTKLCNVLFGEKL 217
            S      +D+WAM AYN +KLCN+LF  +L
Sbjct: 277 FSRLSPTKNDYWAMLAYNRSKLCNILFSNEL 307

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. Required for normal bone development (By similarity). May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R9W5|WWOX_PONAB WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/151 (49%), Positives = 102/151 (67%), Gaps = 5/151 (3%)

Query: 69  KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
           +A++A+S+IL E   A+  A+ LDL  L+SV+ FAE ++ K   L++LV NA  F L +S
Sbjct: 160 RASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWS 219

Query: 129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSV 188
            T+DG ETTFQVNHL HFYL   L++ L + A   ARV+VVSSESHR++ I  D++ K  
Sbjct: 220 LTKDGLETTFQVNHLGHFYLVQLLQDVLCRSAP--ARVIVVSSESHRFTDI-NDSLGKLD 276

Query: 189 LS--VENYSDFWAMTAYNDTKLCNVLFGEKL 217
            S      +D+WAM AYN +KLCNVLF  +L
Sbjct: 277 FSRLSPTKNDYWAMLAYNRSKLCNVLFSNEL 307

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q803A8|WWOX_DANRE WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 102/180 (56%), Gaps = 7/180 (3%)

Query: 69  KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
           +A+ A S I+ E   A+   + LDL  L+SV++FAE ++     L++LV NA V    + 
Sbjct: 157 RASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWR 216

Query: 129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD--TISK 186
            TEDGFE+TFQ+ HL HF L   L++ L   A   ARVVVVSSESHR++ +      +  
Sbjct: 217 LTEDGFESTFQICHLGHFLLVQLLQDVLRLSAP--ARVVVVSSESHRFTDLLDSCGNLDL 274

Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI--TVSKKWW 244
            +LS     ++W++ AYN  KLCN+LF  +L      + I  ++ H    +  ++ + WW
Sbjct: 275 DLLSPPQ-KNYWSLLAYNRAKLCNLLFSSELHRRMSPHGICCNALHPGSMMFTSIHRSWW 333

Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2RVM0|TIC32_ARATH Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 7/144 (4%)

Query: 77  ILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFET 136
           I+ + P A+   MELDL  ++SV+KFA EY+     LN+L+ NAG+    F  ++D  E 
Sbjct: 73  IVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLSKDNIEL 132

Query: 137 TFQVNHLAHFYLT---LQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVEN 193
            F  NHL HF LT   L    +  + +K   R+V +SSE+HR+SY       K    + +
Sbjct: 133 QFATNHLGHFLLTKLLLDTMKSTSRESKREGRIVNLSSEAHRFSYPEGVRFDK----IND 188

Query: 194 YSDFWAMTAYNDTKLCNVLFGEKL 217
            S + +M AY  +KLCNVL   +L
Sbjct: 189 KSSYSSMRAYGQSKLCNVLHANEL 212

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6RVV4|TIC32_PEA Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 81/151 (53%), Gaps = 7/151 (4%)

Query: 70  ANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH 129
           A D    IL + PSA+  A+ELDL  L SVKKFA E+    R LNIL+ NAG+    F  
Sbjct: 67  AKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIMACPFKL 126

Query: 130 TEDGFETTFQVNHLAHFYLTLQLENALIKG---AKLFARVVVVSSESHRYSYITKDTISK 186
           ++D  E  F  NH+ HF LT  L + + K    +K   R+V V+SE+HR++Y       K
Sbjct: 127 SKDNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYPEGIRFDK 186

Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKL 217
               + + S +    AY  +KL NVL   +L
Sbjct: 187 ----INDQSSYNNWRAYGQSKLANVLHANQL 213

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BYK4|RDH12_MOUSE Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 91/179 (50%), Gaps = 14/179 (7%)

Query: 42  TGLKKKDGNLCFDLVQSSKLFYQNCWD--KANDAISKILTEKPSAQCIAMELDLCRLKSV 99
           TG+ K+      +L +     Y  C D  K   A S+I  +  ++Q +  +LDL   KS+
Sbjct: 49  TGIGKETAR---ELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSI 105

Query: 100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG 159
           + FAE +  + + L+IL+ NAGV    +S T DGFET F VNHL HF LT  L   L + 
Sbjct: 106 RAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKES 165

Query: 160 AKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLA 218
           A   ARVV +SS +H    I           ++    + +  AY  +KL N+LF  +LA
Sbjct: 166 AP--ARVVNLSSIAHLIGKI-------RFHDLQGQKRYCSAFAYGHSKLANLLFTRELA 215

Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q96NR8|RDH12_HUMAN Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3

 Score = 81.6 bits (200), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 90/179 (50%), Gaps = 14/179 (7%)

Query: 42  TGLKKKDGNLCFDLVQSSKLFYQNCWD--KANDAISKILTEKPSAQCIAMELDLCRLKSV 99
           TG+ K+      +L       Y  C D  K   A S+I  +  ++Q +  +LDL   KS+
Sbjct: 49  TGIGKETAR---ELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSI 105

Query: 100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG 159
           + FAE +  + + L+IL+ NAGV    +S T DGFET   VNHL HF LT  L   L   
Sbjct: 106 RAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTYLLLERLKVS 165

Query: 160 AKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLA 218
           A   ARVV VSS +H    I    +     S + YS  +   AY  +KL NVLF  +LA
Sbjct: 166 AP--ARVVNVSSVAHHIGKIPFHDLQ----SEKRYSRGF---AYCHSKLANVLFTRELA 215

Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
307188223	408	WW domain-containing oxidoreductase [Cam	0.595	0.426	0.494	1e-40
322779202	353	hypothetical protein SINV_13067 [Solenop	0.602	0.498	0.477	6e-38
332018946	405	WW domain-containing oxidoreductase [Acr	0.602	0.434	0.472	1e-37
307205372	416	WW domain-containing oxidoreductase [Har	0.602	0.423	0.472	1e-36
350405764	412	PREDICTED: WW domain-containing oxidored	0.623	0.441	0.425	1e-32
345480342	414	PREDICTED: WW domain-containing oxidored	0.517	0.364	0.477	1e-32
391340214	400	PREDICTED: WW domain-containing oxidored	0.633	0.462	0.408	3e-32
326927413	405	PREDICTED: WW domain-containing oxidored	0.589	0.424	0.458	8e-32
340727851	414	PREDICTED: WW domain-containing oxidored	0.517	0.364	0.470	1e-31
194759881	405	GF15334 [Drosophila ananassae] gi|190615	0.691	0.498	0.413	1e-31

>gi|307188223|gb|EFN73055.1| WW domain-containing oxidoreductase [Camponotus floridanus]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 125/178 (70%), Gaps = 4/178 (2%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +KAN+AI +I  EK +A C+A+++DL  L+SV++  E++++KF+SL+IL+LNAGVFGL +
Sbjct: 155 EKANEAIRRIQQEKETANCMALQIDLSSLRSVREAFEQFKQKFKSLHILILNAGVFGLPY 214

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI-TKDTISK 186
             T+DG+ETTFQVNHL+ FYLTL LE+A+        R+VVVSSESHR+S I T + I +
Sbjct: 215 QLTKDGYETTFQVNHLSQFYLTLLLEHAIQSSNN--PRIVVVSSESHRFSSIRTPEDIHQ 272

Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWW 244
           S LS   Y  +WAM AYND+KLCN+LF ++LA  W    +           ++S+ WW
Sbjct: 273 STLSPPAYK-YWAMGAYNDSKLCNILFAQELARKWPSVSVFACHPGNLVSTSLSRHWW 329

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779202|gb|EFZ09538.1| hypothetical protein SINV_13067 [Solenopsis invicta]

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 86/180 (47%), Positives = 124/180 (68%), Gaps = 4/180 (2%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +KAN+AI +I  EK +A C+A+++DL  L SV++ AEE++KKF+ L+ L+LNAGVFGL +
Sbjct: 102 EKANEAIKRIQQEKETANCVALKMDLSSLSSVREAAEEFKKKFKFLHYLILNAGVFGLPY 161

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI-TKDTISK 186
           + T+DG+ETTFQVNHL+ FYLTL L+  +    K  +RVV+VSSESHR+S I T + + +
Sbjct: 162 TLTKDGYETTFQVNHLSQFYLTLLLKQIIHSSDK--SRVVIVSSESHRFSSIRTLEDLHQ 219

Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRF 246
             LS   Y  +WAM AYN++KLCNVLF ++LA  W    +           ++S+ WW +
Sbjct: 220 LTLSPPAYK-YWAMGAYNESKLCNVLFAQELARQWPSVSVFACHPGNMVSTSISRYWWLY 278

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018946|gb|EGI59492.1| WW domain-containing oxidoreductase [Acromyrmex echinatior]

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 123/180 (68%), Gaps = 4/180 (2%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +KAN+AI  I  EK +A C+A+++DL  L SV++ AE++++KF+ L+IL+LNAGVFGL +
Sbjct: 154 EKANEAIKHIQQEKDTANCVALQMDLSSLSSVREAAEQFKQKFKCLDILILNAGVFGLPY 213

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI-TKDTISK 186
             T+DG+ETTFQVNHL+ FYLTL L+  +        R++VVSSESHR+S I T + + +
Sbjct: 214 QLTKDGYETTFQVNHLSQFYLTLLLKQTIQSTNN--PRIIVVSSESHRFSSIRTVEDLHQ 271

Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRF 246
           S LSV  Y  +WAM AYN++KLCN+LF ++LA  W    I           ++S+ WW +
Sbjct: 272 STLSVPAYK-YWAMAAYNESKLCNILFVQELARQWLFVGIFACHPGNLVFTSLSRHWWLY 330

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205372|gb|EFN83713.1| WW domain-containing oxidoreductase [Harpegnathos saltator]

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 120/180 (66%), Gaps = 4/180 (2%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +KA +AI +I  EK S  C  ++LDL  L +V++ AEE++K F++L+IL+LNAGVFG+ +
Sbjct: 155 EKAEEAIRRIKCEKESVNCTVLKLDLSSLHNVQEAAEEFKKAFKTLDILILNAGVFGIPY 214

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK-DTISK 186
             T DG+ETTFQVNHL+ FYLTL LE+++ K A    R+V+VSSESHR+S I   + + K
Sbjct: 215 QLTNDGYETTFQVNHLSQFYLTLLLEHSIQKAAN--PRIVIVSSESHRFSTIRNLEDLHK 272

Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRF 246
           S LS      +WAM AYND+KLCNVLF ++LA  W    +           ++S+ WW +
Sbjct: 273 SRLSPP-AQKYWAMGAYNDSKLCNVLFAQELAYRWPTVSVFSCHPGNLVSSSLSRYWWLY 331

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405764|ref|XP_003487542.1| PREDICTED: WW domain-containing oxidoreductase-like [Bombus impatiens]

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 121/202 (59%), Gaps = 20/202 (9%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +K  +AI KI  EK +  C  + LDL  L SVK+ A+E+ +K+ +LNIL+LNAGVF + +
Sbjct: 153 EKGAEAIQKIQQEKENVMCETLHLDLSSLYSVKEAADEFNQKYSTLNILILNAGVFAIPY 212

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT-ISK 186
           + T+DGFETTFQVNHL+ FY TL L+  L +     +RVV+VSSESHR+S + K+    +
Sbjct: 213 ALTKDGFETTFQVNHLSQFYFTLLLKEPLQRCHN--SRVVIVSSESHRFSNLKKEEDFHR 270

Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRF 246
             LS   Y  +W M AYN++KLCN+LF ++LA  W    +      CC    +       
Sbjct: 271 LTLSPPPY-KYWFMEAYNNSKLCNILFAQELAKRWPSVNV-----FCCHPGNM------V 318

Query: 247 GTPVRTFSWISR-----VRPVT 263
            + +  +SWI R     VRP T
Sbjct: 319 SSSLSRYSWILRLMFMLVRPFT 340

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480342|ref|XP_001606146.2| PREDICTED: WW domain-containing oxidoreductase-like [Nasonia vitripennis]

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 107/155 (69%), Gaps = 4/155 (2%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +KA  A+ K+  E+ +  C  + LDLC L SV+  A ++++K+R+LNIL+LNAGVF + +
Sbjct: 155 EKAKAAVKKVQQERENVTCDILHLDLCSLHSVQAAAAKFKQKYRTLNILILNAGVFAVPY 214

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK-DTISK 186
           + T+DG+E  FQVNHL+ FYLTL LE+ L       +RVV++SSESHR+S I+  + +  
Sbjct: 215 TLTQDGYEMQFQVNHLSQFYLTLLLEHPLRSCQS--SRVVILSSESHRFSLISSVEDLHP 272

Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLW 221
             LS   Y  +WAM AYND+KLCN+LF ++LA  W
Sbjct: 273 LTLSPPAYK-YWAMGAYNDSKLCNILFAQELARRW 306

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391340214|ref|XP_003744439.1| PREDICTED: WW domain-containing oxidoreductase-like [Metaseiulus occidentalis]

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 124/191 (64%), Gaps = 6/191 (3%)

Query: 58  SSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILV 117
           S  +F    + ++ DAI + L+++P+ +  AM +D   L SV+ FA E++KK+ +LNIL+
Sbjct: 137 SRVVFTTRNFAQSEDAIKQALSDRPNLKLEAMFVDFLDLSSVRSFAFEFRKKYDTLNILI 196

Query: 118 LNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS 177
           LNAG+FG GF  + DGFE+T QVNHL+ FYL  QL++ L+  +   +RV+V+SSESHR S
Sbjct: 197 LNAGIFGPGFELSRDGFESTLQVNHLSQFYLYKQLQSLLVSSSP--SRVIVLSSESHRQS 254

Query: 178 YI-TKDTISKSVLSVENYSDFW-AMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHC-- 233
           ++ T + IS+  L++++   FW ++ AYND+KL N+LF  +L     K  I   + H   
Sbjct: 255 FLTTPEDISEERLTMKSPGRFWFSLVAYNDSKLFNILFARELDRRMSKQGIRALAVHPGN 314

Query: 234 CWKITVSKKWW 244
             + ++S+ WW
Sbjct: 315 MIRTSISRTWW 325

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326927413|ref|XP_003209887.1| PREDICTED: WW domain-containing oxidoreductase-like [Meleagris gallopavo]

 Score =  143 bits (361), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/181 (45%), Positives = 114/181 (62%), Gaps = 9/181 (4%)

Query: 69  KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
           + NDA+ +IL E   A+   M LDL  L+SV+ FAE ++ K   L+ILV NA +FG  +S
Sbjct: 169 RGNDAVQRILEEWHKAKVEVMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGAPWS 228

Query: 129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK-- 186
            TEDG E+TFQVNHL HFYL   LE+ L + +   ARVVVVSSESHR++ I KD+  K  
Sbjct: 229 LTEDGLESTFQVNHLGHFYLVQLLEDVLRRSSP--ARVVVVSSESHRFTDI-KDSSGKLD 285

Query: 187 -SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI--TVSKKW 243
            S+LS  +  ++WAM AYN +KLCN+LF  +L      + +  +S H    I  ++ + W
Sbjct: 286 FSLLS-PSRKEYWAMLAYNRSKLCNILFSNELNRRLSPHGVTSNSVHPGNMIYSSIHRNW 344

Query: 244 W 244
           W
Sbjct: 345 W 345

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340727851|ref|XP_003402248.1| PREDICTED: WW domain-containing oxidoreductase-like [Bombus terrestris]

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/155 (47%), Positives = 105/155 (67%), Gaps = 4/155 (2%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +K  +A+ +I +EK    C  + LDL  L SV K A+E+Q+K+R+LNIL+LNAGVF + +
Sbjct: 155 EKGAEAVRRIQSEKEGVMCETLHLDLSSLCSVNKAADEFQQKYRTLNILILNAGVFAIPY 214

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK-DTISK 186
             T+DGFETTFQVNHL+ FY TL L+  L       +RVV+V+SESHR++ + K +   +
Sbjct: 215 ELTQDGFETTFQVNHLSQFYFTLLLKGPLQNCHN--SRVVIVTSESHRFANLKKVEDFHR 272

Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLW 221
             LS   Y  +W M +YN++KLCN+LF ++LA  W
Sbjct: 273 LTLSPPPY-KYWFMESYNNSKLCNILFAQELAKRW 306

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759881|ref|XP_001962175.1| GF15334 [Drosophila ananassae] gi|190615872|gb|EDV31396.1| GF15334 [Drosophila ananassae]

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 30/232 (12%)

Query: 66  CWDK--ANDAISKILTEKPSAQ--CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG 121
           C +K  A  AI +I  E+P+A+  C  + LDL  L SVKKF  E ++    ++ L+LNAG
Sbjct: 152 CRNKVSAEAAIERIAQERPAARSRCRFVALDLSSLLSVKKFVTEIKESVSHIDYLILNAG 211

Query: 122 VFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLF---ARVVVVSSESHRYSY 178
           VF L ++ TEDG ETTFQV+HL+HFYLTLQLE        LF    R+VV+SSESHR++ 
Sbjct: 212 VFALPYTKTEDGLETTFQVSHLSHFYLTLQLET-------LFDYKTRIVVLSSESHRFAN 264

Query: 179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKIT 238
           +  + ++   LS      FW+M AYN+ KLCNVLF ++LA  W +  I++ S H    ++
Sbjct: 265 LPVENLAVHHLSPPP-EKFWSMMAYNNAKLCNVLFAQELAQRWKQRGISVFSVHPGNMVS 323

Query: 239 --VSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGTA-------EKVGLSGL 281
             +S+ +W +    R    I  VRP T        T+       E  GLSGL
Sbjct: 324 TDLSRNYWFY----RLLFAI--VRPFTKSLQQAAATSIYCATANELTGLSGL 369

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
UNIPROTKB|E1C8R5	390	WWOX "WW domain-containing oxi	0.708	0.530	0.420	5.2e-33
UNIPROTKB|F1NXW7	414	WWOX "WW domain-containing oxi	0.708	0.5	0.420	5.2e-33
UNIPROTKB|Q5F389	414	WWOX "WW domain-containing oxi	0.708	0.5	0.420	5.2e-33
UNIPROTKB|Q0P5N4	414	WWOX "Uncharacterized protein"	0.5	0.352	0.516	4.7e-32
UNIPROTKB|E2RQC4	390	WWOX "Uncharacterized protein"	0.688	0.515	0.407	7.7e-32
FB|FBgn0031972	409	Wwox "WW domain containing oxi	0.698	0.498	0.4	9.8e-32
UNIPROTKB|Q9NZC7	414	WWOX "WW domain-containing oxi	0.702	0.495	0.405	3.3e-31
MGI|MGI:1931237	414	Wwox "WW domain-containing oxi	0.5	0.352	0.503	3.3e-31
UNIPROTKB|Q5R9W5	414	WWOX "WW domain-containing oxi	0.702	0.495	0.405	1.1e-30
ZFIN|ZDB-GENE-040426-858	412	wwox "WW domain containing oxi	0.592	0.419	0.372	8.2e-24

UNIPROTKB|E1C8R5 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 93/221 (42%), Positives = 127/221 (57%)

Query:    69 KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
             + NDA+ +IL E   A+  AM LDL  L+SV+ FAE ++ K   L+ILV NA +FG  + 
Sbjct:   160 RGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWC 219

Query:   129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK-- 186
              TEDG E+TFQVNHL HFYL   LE+ L + +   ARVVVVSSESHR++ I KD+  K  
Sbjct:   220 LTEDGLESTFQVNHLGHFYLVQLLEDILRRSSP--ARVVVVSSESHRFTEI-KDSSGKLG 276

Query:   187 -SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI--TVSKKW 243
              S+LS     ++WAM AYN +KLCN+LF  +L      + +  +S H    I  ++ + W
Sbjct:   277 FSLLSPSK-KEYWAMLAYNRSKLCNILFSNELNRRLSPHGVTSNSVHPGNMIYSSIHRNW 335

Query:   244 WRFG---TPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGL 281
             W +    T  R F+   +    T   V     AE  GL G+
Sbjct:   336 WVYTLLFTLARPFTKSMQQGAATT--VYCATAAELEGLGGM 374

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1NXW7 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 93/221 (42%), Positives = 127/221 (57%)

Query:    69 KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
             + NDA+ +IL E   A+  AM LDL  L+SV+ FAE ++ K   L+ILV NA +FG  + 
Sbjct:   160 RGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWC 219

Query:   129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK-- 186
              TEDG E+TFQVNHL HFYL   LE+ L + +   ARVVVVSSESHR++ I KD+  K  
Sbjct:   220 LTEDGLESTFQVNHLGHFYLVQLLEDILRRSSP--ARVVVVSSESHRFTEI-KDSSGKLG 276

Query:   187 -SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI--TVSKKW 243
              S+LS     ++WAM AYN +KLCN+LF  +L      + +  +S H    I  ++ + W
Sbjct:   277 FSLLSPSK-KEYWAMLAYNRSKLCNILFSNELNRRLSPHGVTSNSVHPGNMIYSSIHRNW 335

Query:   244 WRFG---TPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGL 281
             W +    T  R F+   +    T   V     AE  GL G+
Sbjct:   336 WVYTLLFTLARPFTKSMQQGAATT--VYCATAAELEGLGGM 374

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IEA

UNIPROTKB|Q5F389 WWOX "WW domain-containing oxidoreductase" [Gallus gallus (taxid:9031)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 93/221 (42%), Positives = 127/221 (57%)

Query:    69 KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
             + NDA+ +IL E   A+  AM LDL  L+SV+ FAE ++ K   L+ILV NA +FG  + 
Sbjct:   160 RGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWC 219

Query:   129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK-- 186
              TEDG E+TFQVNHL HFYL   LE+ L + +   ARVVVVSSESHR++ I KD+  K  
Sbjct:   220 LTEDGLESTFQVNHLGHFYLVQLLEDILRRSSP--ARVVVVSSESHRFTEI-KDSSGKLD 276

Query:   187 -SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI--TVSKKW 243
              S+LS     ++WAM AYN +KLCN+LF  +L      + +  +S H    I  ++ + W
Sbjct:   277 FSLLSPSK-KEYWAMLAYNRSKLCNILFSNELNRRLSPHGVTSNSVHPGNMIYSSIHRNW 335

Query:   244 WRFG---TPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGL 281
             W +    T  R F+   +    T   V     AE  GL G+
Sbjct:   336 WVYTLLFTLARPFTKSMQQGAATT--VYCATAAELEGLGGM 374

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q0P5N4 WWOX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 78/151 (51%), Positives = 105/151 (69%)

Query:    69 KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
             +AN+A+S+IL E   A+  AM LDL  L+SV+ FA+ ++ K  SL++LV NA VFGL ++
Sbjct:   160 RANEAVSRILGEWHKAKVEAMTLDLALLRSVQHFAQAFKAKNVSLHVLVCNAAVFGLPWT 219

Query:   129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT--ISK 186
              T+DG ETTFQVNHL HFYL   L++ L + A   ARVVVVSSESHR++ I   +  +  
Sbjct:   220 LTKDGLETTFQVNHLGHFYLVQLLQDVLCRSAP--ARVVVVSSESHRFTDINDSSGKLDF 277

Query:   187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKL 217
             S LS    +D+WAM AYN +KLCN+LF  +L
Sbjct:   278 SRLSPSK-NDYWAMLAYNRSKLCNILFSNEL 307

GO:0005634 "nucleus" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2RQC4 WWOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 88/216 (40%), Positives = 127/216 (58%)

Query:    69 KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
             +AN+A+S+IL E   A+  AM LDL  L+SV+ FA+ ++ K  SL++LV NA  F L +S
Sbjct:   160 RANEAVSQILGEWHKAKVEAMTLDLALLRSVQHFAQAFKAKNVSLHVLVCNAAAFALPWS 219

Query:   129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT--ISK 186
              T+DG ETTFQVNHL HFYL   L++ L + A   ARVVVVSSESHR++ I   +  +  
Sbjct:   220 LTKDGLETTFQVNHLGHFYLVQLLQDVLCRSAP--ARVVVVSSESHRFTDINDSSGKLDF 277

Query:   187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHC--CWKITVSKKWW 244
             S LS    SD+WAM AYN +KLCN+LF  +L        +  ++ H       ++ + WW
Sbjct:   278 SRLSPSK-SDYWAMLAYNRSKLCNILFSNELHRRLSPRGVTSNAVHPGNMMYSSIHRNWW 336

Query:   245 RFG---TPVRTFS-----WISRVRPVTNFQVDLTGT 272
              +    T  R F+     ++ RV+ +++     T T
Sbjct:   337 VYTLLFTLARPFTKSMGRYLLRVKSISHCNSAFTAT 372

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0031972 Wwox "WW domain containing oxidoreductase" [Drosophila melanogaster (taxid:7227)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 88/220 (40%), Positives = 130/220 (59%)

Query:    70 ANDAISKILTEKPSAQ--CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
             A  AI +I  E+P+A+  C    LDL  L+SV++F EE ++    ++ L+LNAGVF L +
Sbjct:   158 AEAAIERIAQERPAARSRCRFAALDLSSLRSVQRFVEEIKQSVSHIDYLILNAGVFALPY 217

Query:   128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS 187
             + T DG ETTFQV+HL+HFYLTLQLE       K   R++V+SSESHR++ +  + ++  
Sbjct:   218 TRTVDGLETTFQVSHLSHFYLTLQLETLF--DYK--TRIIVLSSESHRFANLPVENLAVH 273

Query:   188 VLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKIT--VSKKWWR 245
              LS      +W+M AYN+ KLCNVLF ++LA  W +  I++ S H    ++  +S+ +W 
Sbjct:   274 HLSPPP-EKYWSMMAYNNAKLCNVLFAQELAQRWKQRGISVFSLHPGNMVSSDLSRNYWF 332

Query:   246 FG---TPVRTFSWISRVRPVTNFQVDLTGTA-EKVGLSGL 281
             +      VR F+   +    T+       TA E  GLSGL
Sbjct:   333 YRLLFAIVRPFTKSLQQAAATSIYC---ATANELTGLSGL 369

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010165 "response to X-ray" evidence=IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

UNIPROTKB|Q9NZC7 WWOX "WW domain-containing oxidoreductase" [Homo sapiens (taxid:9606)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 90/222 (40%), Positives = 128/222 (57%)

Query:    69 KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
             +A++A+S+IL E   A+  AM LDL  L+SV+ FAE ++ K   L++LV NA  F L +S
Sbjct:   160 RASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWS 219

Query:   129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK-- 186
              T+DG ETTFQVNHL HFYL   L++ L + A   ARV+VVSSESHR++ I  D++ K  
Sbjct:   220 LTKDGLETTFQVNHLGHFYLVQLLQDVLCRSAP--ARVIVVSSESHRFTDIN-DSLGKLD 276

Query:   187 -SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHC--CWKITVSKKW 243
              S LS    +D+WAM AYN +KLCN+LF  +L        +  ++ H        + + W
Sbjct:   277 FSRLSPTK-NDYWAMLAYNRSKLCNILFSNELHRRLSPRGVTSNAVHPGNMMYSNIHRSW 335

Query:   244 WRFGTPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGLPDSE 285
             W + T + T +     RP T       G A  V  + +P+ E
Sbjct:   336 WVY-TLLFTLA-----RPFTKSMQQ--GAATTVYCAAVPELE 369

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=NAS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0008202 "steroid metabolic process" evidence=TAS

GO:0046983 "protein dimerization activity" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0050662 "coenzyme binding" evidence=TAS

GO:0048037 "cofactor binding" evidence=TAS

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0048705 "skeletal system morphogenesis" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

MGI|MGI:1931237 Wwox "WW domain-containing oxidoreductase" [Mus musculus (taxid:10090)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 76/151 (50%), Positives = 103/151 (68%)

Query:    69 KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
             +A++A+S+IL E   A+  AM LDL  L+SV+ FAE ++ K  SL++LV NAG F L + 
Sbjct:   160 RASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWG 219

Query:   129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT--ISK 186
              T+DG ETTFQVNHL HFYL   L++ L + +   ARV+VVSSESHR++ I   +  +  
Sbjct:   220 LTKDGLETTFQVNHLGHFYLVQLLQDVLCRSSP--ARVIVVSSESHRFTDINDSSGKLDL 277

Query:   187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKL 217
             S LS    SD+WAM AYN +KLCN+LF  +L
Sbjct:   278 SRLSPPR-SDYWAMLAYNRSKLCNILFSNEL 307

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=NAS

GO:0001649 "osteoblast differentiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO;IPI

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0048705 "skeletal system morphogenesis" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=ISO;IDA

UNIPROTKB|Q5R9W5 WWOX "WW domain-containing oxidoreductase" [Pongo abelii (taxid:9601)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 90/222 (40%), Positives = 127/222 (57%)

Query:    69 KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
             +A++A+S+IL E   A+  A+ LDL  L+SV+ FAE ++ K   L++LV NA  F L +S
Sbjct:   160 RASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWS 219

Query:   129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK-- 186
              T+DG ETTFQVNHL HFYL   L++ L + A   ARV+VVSSESHR++ I  D++ K  
Sbjct:   220 LTKDGLETTFQVNHLGHFYLVQLLQDVLCRSAP--ARVIVVSSESHRFTDIN-DSLGKLD 276

Query:   187 -SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHC--CWKITVSKKW 243
              S LS    +D+WAM AYN +KLCNVLF  +L        +  ++ H        + + W
Sbjct:   277 FSRLSPTK-NDYWAMLAYNRSKLCNVLFSNELHRRLSPRGVTSNAVHPGNMMYSNIHRSW 335

Query:   244 WRFGTPVRTFSWISRVRPVTNFQVDLTGTAEKVGLSGLPDSE 285
             W + T + T +     RP T       G A  V  +  P+ E
Sbjct:   336 WVY-TLLFTLA-----RPFTKSMQQ--GAATTVYCAAAPELE 369

GO:0005737 "cytoplasm" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

ZFIN|ZDB-GENE-040426-858 wwox "WW domain containing oxidoreductase" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 8.2e-24, P = 8.2e-24
 Identities = 67/180 (37%), Positives = 101/180 (56%)

Query:    69 KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
             +A+ A S I+ E   A+   + LDL  L+SV++FAE ++     L++LV NA V    + 
Sbjct:   157 RASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWR 216

Query:   129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD--TISK 186
              TEDGFE+TFQ+ HL HF L   L++ L   A   ARVVVVSSESHR++ +      +  
Sbjct:   217 LTEDGFESTFQICHLGHFLLVQLLQDVLRLSAP--ARVVVVSSESHRFTDLLDSCGNLDL 274

Query:   187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRH--CCWKITVSKKWW 244
              +LS     ++W++ AYN  KLCN+LF  +L      + I  ++ H       ++ + WW
Sbjct:   275 DLLSPPQ-KNYWSLLAYNRAKLCNLLFSSELHRRMSPHGICCNALHPGSMMFTSIHRSWW 333

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q91WL8	WWOX_MOUSE	1, ., 1, ., 1, ., -	0.5099	0.5	0.3526	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	292
cd09809	284	cd09809, human_WWOX_like_SDR_c-like, human WWOX (W	6e-50
cd05327	269	cd05327, retinol-DH_like_SDR_c_like, retinol dehyd	2e-42
cd09807	274	cd09807, retinol-DH_like_SDR_c, retinol dehydrogen	2e-27
PRK06197	306	PRK06197, PRK06197, short chain dehydrogenase; Pro	3e-26
PRK06196	315	PRK06196, PRK06196, oxidoreductase; Provisional	4e-24
cd09810	311	cd09810, LPOR_like_SDR_c_like, light-dependent pro	1e-21
PRK05854	313	PRK05854, PRK05854, short chain dehydrogenase; Pro	2e-18
cd05233	234	cd05233, SDR_c, classical (c) SDRs	5e-14
PLN00015	308	PLN00015, PLN00015, protochlorophyllide reductase	6e-13
COG1028	251	COG1028, FabG, Dehydrogenases with different speci	2e-12
PRK07453	322	PRK07453, PRK07453, protochlorophyllide oxidoreduc	5e-12
cd09808	255	cd09808, DHRS-12_like_SDR_c-like, human dehydrogen	1e-10
TIGR01289	314	TIGR01289, LPOR, light-dependent protochlorophylli	2e-09
cd05324	225	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu	6e-09
cd05332	257	cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste	8e-09
COG4221	246	COG4221, COG4221, Short-chain alcohol dehydrogenas	1e-07
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	2e-06
cd05355	270	cd05355, SDR_c1, classical (c) SDR, subgroup 1	3e-06
cd08941	290	cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas	5e-06
cd05339	243	cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy	8e-06
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	9e-06
cd05370	228	cd05370, SDR_c2, classical (c) SDR, subgroup 2	1e-05
PRK12829	264	PRK12829, PRK12829, short chain dehydrogenase; Pro	2e-05
cd08942	250	cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy	2e-05
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	4e-05
cd05333	240	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein	4e-05
PRK12825	249	PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein)	1e-04
PRK06701	290	PRK06701, PRK06701, short chain dehydrogenase; Pro	1e-04
cd05365	242	cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi	3e-04
cd05344	253	cd05344, BKR_like_SDR_like, putative beta-ketoacyl	3e-04
cd05325	233	cd05325, carb_red_sniffer_like_SDR_c, carbonyl red	3e-04
TIGR01830	239	TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier	5e-04
cd08930	250	cd08930, SDR_c8, classical (c) SDR, subgroup 8	7e-04
COG0300	265	COG0300, DltE, Short-chain dehydrogenases of vario	0.001
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	0.001
cd05346	249	cd05346, SDR_c5, classical (c) SDR, subgroup 5	0.001
PRK07067	257	PRK07067, PRK07067, sorbitol dehydrogenase; Provis	0.002
cd05337	255	cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl	0.003
PRK12384	259	PRK12384, PRK12384, sorbitol-6-phosphate dehydroge	0.003
PRK12745	256	PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote	0.004

>gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs

 Score =  166 bits (421), Expect = 6e-50
 Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 11/182 (6%)

Query: 69  KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS 128
           +A+ A+S+IL E   A+  AM LDL  L+SV++FAE ++ K   L++LV NA VF L ++
Sbjct: 37  RASAAVSRILEEWHKARVEAMTLDLASLRSVQRFAEAFKAKNSPLHVLVCNAAVFALPWT 96

Query: 129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSV 188
            TEDG ETTFQVNHL HFYL   LE+ L + A   ARV+VVSSESHR++ +  D+     
Sbjct: 97  LTEDGLETTFQVNHLGHFYLVQLLEDVLRRSAP--ARVIVVSSESHRFTDL-PDSCGN-- 151

Query: 189 LSVENYS----DFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI--TVSKK 242
           L     S     +W+M AYN  KLCN+LF  +L        I  +S H    +  ++ + 
Sbjct: 152 LDFSLLSPPKKKYWSMLAYNRAKLCNILFSNELHRRLSPRGITSNSLHPGNMMYSSIHRN 211

Query: 243 WW 244
           WW
Sbjct: 212 WW 213

Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284

>gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs

 Score =  146 bits (370), Expect = 2e-42
 Identities = 58/151 (38%), Positives = 85/151 (56%), Gaps = 7/151 (4%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +K  +A ++I  E  +A+   ++LDL  L SV++FAEE+  +F  L+IL+ NAG+     
Sbjct: 36  EKGEEAAAEIKKETGNAKVEVIQLDLSSLASVRQFAEEFLARFPRLDILINNAGIMAPPR 95

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS 187
             T+DGFE  F VN+L HF LT  L   L   A   +R+V VSS +HR        I  +
Sbjct: 96  RLTKDGFELQFAVNYLGHFLLTNLLLPVLKASAP--SRIVNVSSIAHRAG-----PIDFN 148

Query: 188 VLSVENYSDFWAMTAYNDTKLCNVLFGEKLA 218
            L +EN  ++    AY  +KL N+LF  +LA
Sbjct: 149 DLDLENNKEYSPYKAYGQSKLANILFTRELA 179

Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269

>gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs

 Score =  107 bits (268), Expect = 2e-27
 Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 11/158 (6%)

Query: 63  YQNCWD--KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA 120
              C D  K  +A ++I  +  + + I   LDL  LKS++ FA E+  +   L++L+ NA
Sbjct: 29  IMACRDMAKCEEAAAEIRRDTLNHEVIVRHLDLASLKSIRAFAAEFLAEEDRLDVLINNA 88

Query: 121 GVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT 180
           GV    +S TEDGFE  F VNHL HF LT  L + L K A   +R+V VSS +H+   I 
Sbjct: 89  GVMRCPYSKTEDGFEMQFGVNHLGHFLLTNLLLDLLKKSAP--SRIVNVSSLAHKAGKIN 146

Query: 181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLA 218
            D ++    S ++Y+      AY  +KL NVLF  +LA
Sbjct: 147 FDDLN----SEKSYN---TGFAYCQSKLANVLFTRELA 177

Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274

>gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional

 Score =  104 bits (261), Expect = 3e-26
 Identities = 53/146 (36%), Positives = 70/146 (47%), Gaps = 8/146 (5%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           DK   A ++I    P A     ELDL  L SV+  A+  +  +  +++L+ NAGV     
Sbjct: 51  DKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYPRIDLLINNAGVMYTPK 110

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS 187
             T DGFE  F  NHL HF LT  L + L+      +RVV VSS  HR     +  I   
Sbjct: 111 QTTADGFELQFGTNHLGHFALTGLLLDRLLPVPG--SRVVTVSSGGHRI----RAAIHFD 164

Query: 188 VLSVENYSDFWAMTAYNDTKLCNVLF 213
            L  E   +  A  AY  +KL N+LF
Sbjct: 165 DLQWERRYNRVA--AYGQSKLANLLF 188

Length = 306

>gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional

 Score = 99.0 bits (247), Expect = 4e-24
 Identities = 50/127 (39%), Positives = 63/127 (49%), Gaps = 15/127 (11%)

Query: 90  ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 149
            LDL  L+SV+ FAE +    R ++IL+ NAGV     +   DG+E  F  NHL HF L 
Sbjct: 77  MLDLADLESVRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALV 136

Query: 150 LQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYS---DFWAMTAYNDT 206
             L  AL  GA   ARVV +SS  HR S I  D          +++   D W   AY  +
Sbjct: 137 NLLWPALAAGAG--ARVVALSSAGHRRSPIRWDDP--------HFTRGYDKW--LAYGQS 184

Query: 207 KLCNVLF 213
           K  N LF
Sbjct: 185 KTANALF 191

Length = 315

>gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs

 Score = 92.2 bits (229), Expect = 1e-21
 Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 19/166 (11%)

Query: 69  KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---GL 125
           KA  A  ++   K S     +  DL  L SV++F + +++  R L+ LV NA V+     
Sbjct: 38  KAEQAAQEVGMPKDSYSV--LHCDLASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAK 95

Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT----- 180
               T DGFE T  VNHL HF LT  L   L +      R+V+V S +H  + +      
Sbjct: 96  EPRFTADGFELTVGVNHLGHFLLTNLLLEDLQRSENASPRIVIVGSITHNPNTLAGNVPP 155

Query: 181 KDTIS---------KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKL 217
           + T+          K   S+ +  +F    AY D+K+CN+L   +L
Sbjct: 156 RATLGDLEGLAGGLKGFNSMIDGGEFEGAKAYKDSKVCNMLTTYEL 201

Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311

>gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 57/173 (32%), Positives = 75/173 (43%), Gaps = 22/173 (12%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
            K   A++ I T  P A+     LDL  L SV    E+ + + R +++L+ NAGV     
Sbjct: 49  AKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPPE 108

Query: 128 SH-TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK 186
              T DGFE  F  NHL HF LT  L   L  G    ARV   SS + R   I  D +  
Sbjct: 109 RQTTADGFELQFGTNHLGHFALTAHLLPLLRAGR---ARVTSQSSIAARRGAINWDDL-- 163

Query: 187 SVLSVENYSDFWA-MTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKIT 238
                 N+   +A M AY+ +K+   LF  +L            SR   W IT
Sbjct: 164 ------NWERSYAGMRAYSQSKIAVGLFALELDRR---------SRAAGWGIT 201

Length = 313

>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 80  EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETT 137
           E      +A++ D+   + V+   EE  ++F  L+ILV NAG+   G     T++ ++  
Sbjct: 42  EALGGNAVAVQADVSDEEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRV 101

Query: 138 FQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
             VN    F LT      + K      R+V +SS
Sbjct: 102 LDVNLTGVFLLTRAALPHMKKQGG--GRIVNISS 133

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234

>gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase

 Score = 67.4 bits (165), Expect = 6e-13
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 33/157 (21%)

Query: 82  PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTF 138
           P      M LDL  L SV++F + +++  R L++LV NA V+       + T DGFE + 
Sbjct: 45  PKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSV 104

Query: 139 QVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT--KDTISKSV-------- 188
             NHL HF L+  L + L K      R+++V S       IT   +T++ +V        
Sbjct: 105 GTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGS-------ITGNTNTLAGNVPPKANLGD 157

Query: 189 -------LSVENYS------DFWAMTAYNDTKLCNVL 212
                  L+  N S      +F    AY D+K+CN+L
Sbjct: 158 LRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNML 194

Length = 308

>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 28/163 (17%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDL-CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
           ++A +A++  + E    +  A+  D+    +SV+      +++F  ++ILV NAG+ G  
Sbjct: 41  EEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPD 100

Query: 127 FSH---TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT 183
                 TE+ ++    VN L  F LT      + K      R+V +SS +          
Sbjct: 101 APLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ-----RIVNISSVAGLGGP----- 150

Query: 184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI 226
                             AY  +K   +   + LA       I
Sbjct: 151 --------------PGQAAYAASKAALIGLTKALALELAPRGI 179

Length = 251

>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 23/152 (15%)

Query: 82  PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTF 138
           P      + +DL  L SV++F ++++   + L+ LV NA V+         +  G+E + 
Sbjct: 53  PPDSYTIIHIDLGDLDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSM 112

Query: 139 QVNHLAHFYL-TLQLENALIKGAKLFA-RVVVVSSESHRYSYI-TKDTIS---------- 185
             NHL HF L  L LE+  +K +     R+V++ + +     +  K  I           
Sbjct: 113 ATNHLGHFLLCNLLLED--LKKSPAPDPRLVILGTVTANPKELGGKIPIPAPADLGDLSG 170

Query: 186 -----KSVLSVENYSDFWAMTAYNDTKLCNVL 212
                K+ +S+ +   F    AY D+KLCN+L
Sbjct: 171 FEAGFKAPISMADGKKFKPGKAYKDSKLCNML 202

Length = 322

>gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
            +A +A  +I TE  +       +D+   K V +F EE++++ + L++L+ NAG      
Sbjct: 36  TRAEEARKEIETESGNQNIFLHIVDMSDPKQVWEFVEEFKEEGKKLHVLINNAGCMVNKR 95

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
             TEDG E  F  N L  + LT  L   L K      RV+ VSS
Sbjct: 96  ELTEDGLEKNFATNTLGTYILTTHLIPVLEKEED--PRVITVSS 137

Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255

>gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 31/148 (20%)

Query: 89  MELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH---TEDGFETTFQVNHLAH 145
           M LDL  L SV++F +++++  R L+ LV NA V+         T DGFE +   NHL H
Sbjct: 58  MHLDLGSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGH 117

Query: 146 FYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS-------------------- 185
           F L   L + L        R+++V S       IT +T +                    
Sbjct: 118 FLLCNLLLDDLKNSPNKDKRLIIVGS-------ITGNTNTLAGNVPPKANLGDLSGLAAG 170

Query: 186 -KSVLSVENYSDFWAMTAYNDTKLCNVL 212
            K+ +++ +  +F    AY D+K+CN+L
Sbjct: 171 FKAPIAMIDGKEFKGAKAYKDSKVCNML 198

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314

>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs

 Score = 54.9 bits (133), Expect = 6e-09
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 11/109 (10%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           ++   A+ K+  E  S +    +LD+    S++  A+  ++K+  L+ILV NAG+   GF
Sbjct: 36  ERGQAAVEKLRAEGLSVRFH--QLDVTDDASIEAAADFVEEKYGGLDILVNNAGIAFKGF 93

Query: 128 ---SHTEDGFETTFQVNHLAHFYLTLQLENALIK--GAKLFARVVVVSS 171
              + T +    T + N    F+ T+ +  AL+         R+V VSS
Sbjct: 94  DDSTPTREQARETMKTN----FFGTVDVTQALLPLLKKSPAGRIVNVSS 138

PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225

>gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 78  LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFE 135
             E  +     + LD+  L+  ++  EE  K F  L+IL+ NAG+      H  + D   
Sbjct: 47  CLELGAPSPHVVPLDMSDLEDAEQVVEEALKLFGGLDILINNAGISMRSLFHDTSIDVDR 106

Query: 136 TTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
              +VN+     LT      LI+ ++    +VVVSS
Sbjct: 107 KIMEVNYFGPVALTKAALPHLIERSQ--GSIVVVSS 140

Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257

>gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 72  DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH-- 129
           + +  +  E  +   +A+ LD+    +V+   E   ++F  ++ILV NAG+         
Sbjct: 41  ERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEA 100

Query: 130 TEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFARVVVVSSESHRYSYIT 180
             D ++     N       T     A++ G   +    ++ + S + RY Y  
Sbjct: 101 DLDDWDRMIDTNVKGLLNGT----RAVLPGMVERKSGHIINLGSIAGRYPYPG 149

Length = 246

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 66  CWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL 125
           C D A      +      A+  A ++D+    ++K       + F  L+ILV NAG+F L
Sbjct: 39  CGDDAAATAELVEAAGGKAR--ARQVDVRDRAALKAAVAAGVEDFGRLDILVANAGIFPL 96

Query: 126 G--FSHTEDGFETTFQVNHLAHFYLTLQLE-NALIKGAKLFARVVVVSS 171
                  ++ +E    VN L   +L  Q    ALI+      R+V+ SS
Sbjct: 97  TPFAEMDDEQWERVIDVN-LTGTFLLTQAALPALIRAG--GGRIVLTSS 142

Length = 251

>gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           D A +  +K L E+   +C+ +  DL      +   +E  K+F  L+ILV NA       
Sbjct: 63  DDAEE--TKKLIEEEGRKCLLIPGDLGDESFCRDLVKEVVKEFGKLDILVNNAAYQHPQE 120

Query: 128 S---HTEDGFETTFQVNHLAHFYLT 149
           S    T +  E TF+ N  + FYLT
Sbjct: 121 SIEDITTEQLEKTFRTNIFSMFYLT 145

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270

>gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 38/153 (24%)

Query: 69  KANDAISKILTEKPSA--QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---- 122
           +A  A   +L   P A      + +DL  + SV   A+E +K++  L+ L LNAG+    
Sbjct: 42  RAEAACRALLASHPDARVVFDYVLVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMPNP 101

Query: 123 -------------FGLGF------------------SHTEDGFETTFQVNHLAHFYLTLQ 151
                          L                      TEDG    FQ N   H+YL  +
Sbjct: 102 GIDWIGAIKEVLTNPLFAVTNPTYKIQAEGLLSQGDKATEDGLGEVFQTNVFGHYYLIRE 161

Query: 152 LENALIKGAKLFARVVVVSSESHRYSYITKDTI 184
           LE  L+  +   ++++  SS +    Y + + I
Sbjct: 162 LEP-LLCRSDGGSQIIWTSSLNASPKYFSLEDI 193

3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290

>gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 80  EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETT 137
            K   +    + D+ + + V + A++ +K+   + IL+ NAGV          ++  E T
Sbjct: 44  RKAGGKVHYYKCDVSKREEVYEAAKKIKKEVGDVTILINNAGVVSGKKLLELPDEEIEKT 103

Query: 138 FQVNHLAHFYLT 149
           F+VN LAHF+ T
Sbjct: 104 FEVNTLAHFWTT 115

17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
             A + ++++  E   A+      D+    ++             L+ +V NAGV   G 
Sbjct: 38  PGAAELVAEL--EALGAEVTVAACDVADRDALAALLAALPAALGPLDGVVHNAGVLDDGP 95

Query: 127 FSH-TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
               T + FE          + L       L +   L    V+ SS
Sbjct: 96  LEELTPERFERVLAPKVTGAWNLH-----ELTRDLDL-GAFVLFSS 135

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 88  AMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV-----FGLGFSHTEDGFETTFQVNH 142
            + LD+   +SV+  AE    ++ +L+IL+ NAG+          S  +   +T    N 
Sbjct: 54  TIVLDVGDAESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASDLDK-ADTEIDTNL 112

Query: 143 LAHFYLTLQLENALIKGAKLFARVVVVSS 171
           +    L       L K  +  A +V VSS
Sbjct: 113 IGPIRLIKAFLPHLKKQPE--ATIVNVSS 139

Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228

>gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           D +  A++      P A+  A   D+     V++  +   ++F  L++LV NAG+ G   
Sbjct: 42  DVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVLVNNAGIAGPTG 101

Query: 128 ---SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY 178
                T + +E T  VN    FY   +    L+K +     ++ +SS + R  Y
Sbjct: 102 GIDEITPEQWEQTLAVNLNGQFY-FARAAVPLLKASGHGGVIIALSSVAGRLGY 154

Length = 264

>gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 85  QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV-FGLGF-SHTEDGFETTFQVNH 142
           +CIA+  DL   + ++       ++   L++LV NAG  +G    +  E G++    +N 
Sbjct: 55  ECIAIPADLSSEEGIEALVARVAERSDRLDVLVNNAGATWGAPLEAFPESGWDKVMDINV 114

Query: 143 LAHFYLTLQLENALIKGAKL--FARVV-------VVSSESHRYSY 178
            + F+LT  L   L   A     ARV+       +V S    YSY
Sbjct: 115 KSVFFLTQALLPLLRAAATAENPARVINIGSIAGIVVSGLENYSY 159

Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 84  AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
            +   +  D+    +V+   E   + F +L+ILV NAG+         +E+ ++    VN
Sbjct: 54  GEARVLVFDVSDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVN 113

Query: 142 HLAHFYLTLQLENALIKG--AKLFARVVVVSS 171
            L   +  ++   A +       + R+V +SS
Sbjct: 114 -LTGTFNVVR---AALPPMIKARYGRIVNISS 141

Length = 246

>gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           + A + + +I  +       A+E D+   ++V+   E+ + +F  ++ILV NAG+     
Sbjct: 35  EAAAETVEEI--KALGGNAAALEADVSDREAVEALVEKVEAEFGPVDILVNNAGITRDNL 92

Query: 128 SH--TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
               +E+ ++    VN    F +T  +  A+IK  +   R++ +SS
Sbjct: 93  LMRMSEEDWDAVINVNLTGVFNVTQAVIRAMIK--RRSGRIINISS 136

This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240

>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
           + A + +  +      AQ +  + D+    +++       ++F  ++ILV NAG+F    
Sbjct: 42  EAAEELVEAVEALGRRAQAV--QADVTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKP 99

Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFARVVVVSS 171
               ++D ++    VN L+  +  L+   A++     +   R+V +SS
Sbjct: 100 LADMSDDEWDEVIDVN-LSGVFHLLR---AVVPPMRKQRGGRIVNISS 143

Length = 249

>gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 14/91 (15%)

Query: 68  DKANDA-ISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
           D+  DA  +K   EK   +C+ +  D+      K   EE  ++   L+ILV NA      
Sbjct: 79  DEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRLDILVNNA-----A 133

Query: 127 FSH--------TEDGFETTFQVNHLAHFYLT 149
           F +        T +  + TF+ N  ++F++T
Sbjct: 134 FQYPQQSLEDITAEQLDKTFKTNIYSYFHMT 164

Length = 290

>gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
           + A    + I  ++   Q I +E ++   + ++   +    +F  + ILV NAG  G   
Sbjct: 34  EGAEAVAAAI--QQAGGQAIGLECNVTSEQDLEAVVKATVSQFGGITILVNNAGGGGPKP 91

Query: 127 --FSHTEDGFETTFQVNHLAHFYLT 149
                TE+ FE  F++N  + F L+
Sbjct: 92  FDMPMTEEDFEWAFKLNLFSAFRLS 116

This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242

>gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG------ 121
           ++ N   +        A  +A+  DL   + + +  E+    F  ++ILV NAG      
Sbjct: 34  NRENLERAASELRAGGAGVLAVVADLTDPEDIDRLVEKAGDAFGRVDILVNNAGGPPPGP 93

Query: 122 VFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL--FARVVVVSS 171
              L    T++ +   F +  L+   +      A++ G K   + R+V +SS
Sbjct: 94  FAEL----TDEDWLEAFDLKLLSVIRIV----RAVLPGMKERGWGRIVNISS 137

This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253

>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 87  IAMELDLCRL--KSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVN 141
             +ELD+     +S +  AE        L++L+ NAG+    G       +     FQVN
Sbjct: 50  HILELDVTDEIAESAEAVAERL--GDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVN 107

Query: 142 HLAHFYLTLQLENALIKGAKLFARVVVVSSE 172
            L    LT      L+KGA+  A+++ +SS 
Sbjct: 108 VLGPLLLTQAFLPLLLKGAR--AKIINISSR 136

Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233

>gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
           ++  + + + L      + + +  D+   + VK   EE +++   ++ILV NAG+    L
Sbjct: 33  EEGAEEVVEELKAYG-VKALGVVCDVSDREDVKAVVEEIEEELGPIDILVNNAGITRDNL 91

Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
                E+ ++     N    F LT  +   +IK  +   R++ +SS
Sbjct: 92  LMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIK--QRSGRIINISS 135

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239

>gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 69  KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG--VFGLG 126
            A + + + LT     + IA+ELD+   +S+K+  E Y +KF  ++IL+ NA       G
Sbjct: 37  PALEQLKEELTNLYKNRVIALELDITSKESIKELIESYLEKFGRIDILINNAYPSPKVWG 96

Query: 127 ---FSHTEDGFETTFQVNHLAHFYLTLQ 151
                   + +     VN L   +L  Q
Sbjct: 97  SRFEEFPYEQWNEVLNVN-LGGAFLCSQ 123

This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250

>gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 72  DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL--GFS- 128
           +A++K L +K   +   +  DL   +++++  +E +++   +++LV NAG FG    F  
Sbjct: 44  EALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNAG-FGTFGPFLE 102

Query: 129 HTEDGFETTFQVNHLAHFYLT 149
            + D  E   Q+N LA   LT
Sbjct: 103 LSLDEEEEMIQLNILALTRLT 123

Length = 265

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 78  LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG--VFG--LGFSHTEDG 133
           L E  +     +ELD+   +S+K   +E  ++F  +++LV NAG  +FG     S  E+ 
Sbjct: 40  LGELLNDNLEVLELDVTDEESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETS-IEE- 97

Query: 134 FETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
               F+VN      +T      + K      R+V VSS
Sbjct: 98  VRELFEVNVFGPLRVTRAFLPLMRKQGS--GRIVNVSS 133

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 73  AISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--- 129
            ++  L  K   + + ++LD+   +S++   E   ++FR ++ILV NAG   LG      
Sbjct: 39  ELADELGAKFPVKVLPLQLDVSDRESIEAALENLPEEFRDIDILVNNAG-LALGLDPAQE 97

Query: 130 -TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY 178
              + +ET    N      +T  +   +I  A+    ++ + S + RY Y
Sbjct: 98  ADLEDWETMIDTNVKGLLNVTRLILPIMI--ARNQGHIINLGSIAGRYPY 145

These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249

>gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 84  AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 141
              IA+ LD+ R  S+ +      ++F  ++IL  NA +F +      + D ++  F VN
Sbjct: 52  PAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVN 111

Query: 142 HLAHFYLTLQLENALI---KGAKL 162
               F+L   +   ++   +G K+
Sbjct: 112 VKGLFFLMQAVARHMVEQGRGGKI 135

Length = 257

>gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 18/125 (14%)

Query: 80  EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG----FSHTEDGFE 135
                + I  + D+  L   +   ++  + F  L+ LV NAG+           TED F+
Sbjct: 47  LAAGRRAIYFQADIGELSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFD 106

Query: 136 TTFQVNHLAHFYLTLQLENALIKGAKLFA----RVVVVSSES------HRYSYITKDTIS 185
               +N    F+LT  +   +++    F      ++ V+S +      +R  Y     IS
Sbjct: 107 RLIAINLRGPFFLTQAVARRMVEQPDRFDGPHRSIIFVTSINAYLVSPNRGEY----CIS 162

Query: 186 KSVLS 190
           K+ LS
Sbjct: 163 KAGLS 167

This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255

>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 25/109 (22%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV----- 122
           +KA +   +I  E           D    +SV   +    + F  +++LV NAG+     
Sbjct: 37  EKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAF 96

Query: 123 ---FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVV 168
              F LG       F+ + QVN + +F             A+ F+R+++
Sbjct: 97  ITDFQLG------DFDRSLQVNLVGYFLC-----------AREFSRLMI 128

Length = 259

>gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 24/124 (19%)

Query: 84  AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH-------TEDGFET 136
            + I    D+  L + +   +  Q  +  ++ LV NAGV   G          T + F+ 
Sbjct: 52  VEVIFFPADVADLSAHEAMLDAAQAAWGRIDCLVNNAGV---GVKVRGDLLDLTPESFDR 108

Query: 137 TFQVNHLAHFYLTLQLENALIKG----AKLFARVVVVSSES------HRYSYITKDTISK 186
              +N    F+LT  +   ++            +V VSS +      +R  Y     ISK
Sbjct: 109 VLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNRGEY----CISK 164

Query: 187 SVLS 190
           + LS
Sbjct: 165 AGLS 168

Length = 256

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
KOG1208|consensus	314		100.0
COG0300	265	DltE Short-chain dehydrogenases of various substra	100.0
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	100.0
PRK05854	313	short chain dehydrogenase; Provisional	100.0
KOG1205|consensus	282		100.0
KOG1201|consensus	300		100.0
KOG1200|consensus	256		100.0
PRK08339	263	short chain dehydrogenase; Provisional	100.0
PRK08303	305	short chain dehydrogenase; Provisional	100.0
PRK06197	306	short chain dehydrogenase; Provisional	100.0
PRK07063	260	short chain dehydrogenase; Provisional	100.0
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	100.0
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK06196	315	oxidoreductase; Provisional	100.0
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	100.0
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	100.0
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	100.0
PRK07478	254	short chain dehydrogenase; Provisional	100.0
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK05867	253	short chain dehydrogenase; Provisional	100.0
KOG4169|consensus	261		100.0
PRK08589	272	short chain dehydrogenase; Validated	100.0
PRK07791	286	short chain dehydrogenase; Provisional	100.0
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK07062	265	short chain dehydrogenase; Provisional	100.0
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	100.0
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	100.0
PRK06139	330	short chain dehydrogenase; Provisional	100.0
PRK06114	254	short chain dehydrogenase; Provisional	100.0
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	100.0
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.98
PLN02780	320	ketoreductase/ oxidoreductase	99.98
KOG0725|consensus	270		99.98
PRK05599	246	hypothetical protein; Provisional	99.98
PRK08862	227	short chain dehydrogenase; Provisional	99.98
PRK05876	275	short chain dehydrogenase; Provisional	99.98
PRK05872	296	short chain dehydrogenase; Provisional	99.98
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.98
PRK12747	252	short chain dehydrogenase; Provisional	99.98
PRK07831	262	short chain dehydrogenase; Provisional	99.98
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.98
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.98
PRK09242	257	tropinone reductase; Provisional	99.97
PLN00015	308	protochlorophyllide reductase	99.97
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.97
PRK07035	252	short chain dehydrogenase; Provisional	99.97
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.97
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.97
PRK08265	261	short chain dehydrogenase; Provisional	99.97
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.97
PRK06172	253	short chain dehydrogenase; Provisional	99.97
PRK05866	293	short chain dehydrogenase; Provisional	99.97
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.97
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.97
PRK07985	294	oxidoreductase; Provisional	99.97
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.97
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.97
PRK08643	256	acetoin reductase; Validated	99.97
PRK06128	300	oxidoreductase; Provisional	99.97
PRK08278	273	short chain dehydrogenase; Provisional	99.97
KOG1611|consensus	249		99.97
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.97
PRK07109	334	short chain dehydrogenase; Provisional	99.97
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.97
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.97
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.97
PRK06484	520	short chain dehydrogenase; Validated	99.97
PRK07825	273	short chain dehydrogenase; Provisional	99.97
PRK07677	252	short chain dehydrogenase; Provisional	99.97
PRK12743	256	oxidoreductase; Provisional	99.97
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.97
PLN02253	280	xanthoxin dehydrogenase	99.97
PRK06125	259	short chain dehydrogenase; Provisional	99.97
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
PRK06841	255	short chain dehydrogenase; Provisional	99.97
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.97
PRK06398	258	aldose dehydrogenase; Validated	99.97
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.97
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.97
PRK05717	255	oxidoreductase; Validated	99.97
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.97
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.97
PRK05855	582	short chain dehydrogenase; Validated	99.97
PRK08251	248	short chain dehydrogenase; Provisional	99.97
PRK07774	250	short chain dehydrogenase; Provisional	99.97
PRK07024	257	short chain dehydrogenase; Provisional	99.97
PRK08226	263	short chain dehydrogenase; Provisional	99.97
PRK06940	275	short chain dehydrogenase; Provisional	99.97
PRK09186	256	flagellin modification protein A; Provisional	99.96
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.96
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.96
PRK06949	258	short chain dehydrogenase; Provisional	99.96
PRK07904	253	short chain dehydrogenase; Provisional	99.96
PRK12939	250	short chain dehydrogenase; Provisional	99.96
PRK06484	520	short chain dehydrogenase; Validated	99.96
PRK12937	245	short chain dehydrogenase; Provisional	99.96
PRK05650	270	short chain dehydrogenase; Provisional	99.96
KOG1610|consensus	322		99.96
PRK06138	252	short chain dehydrogenase; Provisional	99.96
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.96
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.96
KOG1207|consensus	245		99.96
PRK07576	264	short chain dehydrogenase; Provisional	99.96
PRK06701	290	short chain dehydrogenase; Provisional	99.96
PRK08703	239	short chain dehydrogenase; Provisional	99.96
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.96
PRK08628	258	short chain dehydrogenase; Provisional	99.96
PRK07814	263	short chain dehydrogenase; Provisional	99.96
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.96
PRK05993	277	short chain dehydrogenase; Provisional	99.96
PRK07067	257	sorbitol dehydrogenase; Provisional	99.96
PRK09072	263	short chain dehydrogenase; Provisional	99.96
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.96
PRK07856	252	short chain dehydrogenase; Provisional	99.96
PRK06182	273	short chain dehydrogenase; Validated	99.96
PRK06523	260	short chain dehydrogenase; Provisional	99.96
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.96
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.96
PRK07890	258	short chain dehydrogenase; Provisional	99.96
PRK06123	248	short chain dehydrogenase; Provisional	99.96
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.96
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.96
PRK06194	287	hypothetical protein; Provisional	99.96
PRK09134	258	short chain dehydrogenase; Provisional	99.96
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.96
PRK12744	257	short chain dehydrogenase; Provisional	99.96
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.96
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.96
KOG1209|consensus	289		99.96
PRK06057	255	short chain dehydrogenase; Provisional	99.96
PRK07832	272	short chain dehydrogenase; Provisional	99.96
PRK08267	260	short chain dehydrogenase; Provisional	99.96
PRK05875	276	short chain dehydrogenase; Provisional	99.96
PRK07454	241	short chain dehydrogenase; Provisional	99.96
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.96
PRK06483	236	dihydromonapterin reductase; Provisional	99.95
PRK06500	249	short chain dehydrogenase; Provisional	99.95
PRK06180	277	short chain dehydrogenase; Provisional	99.95
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.95
PRK07201	657	short chain dehydrogenase; Provisional	99.95
PRK06179	270	short chain dehydrogenase; Provisional	99.95
PRK07069	251	short chain dehydrogenase; Validated	99.95
PRK08263	275	short chain dehydrogenase; Provisional	99.95
PRK05884	223	short chain dehydrogenase; Provisional	99.95
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.95
PRK12746	254	short chain dehydrogenase; Provisional	99.95
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.95
PRK10538	248	malonic semialdehyde reductase; Provisional	99.95
PRK07102	243	short chain dehydrogenase; Provisional	99.95
PRK07775	274	short chain dehydrogenase; Provisional	99.95
PRK12742	237	oxidoreductase; Provisional	99.95
PRK12827	249	short chain dehydrogenase; Provisional	99.95
PRK06198	260	short chain dehydrogenase; Provisional	99.95
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.95
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.95
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.95
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.95
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.95
PRK06914	280	short chain dehydrogenase; Provisional	99.95
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.95
KOG1014|consensus	312		99.95
KOG1199|consensus	260		99.95
PRK05693	274	short chain dehydrogenase; Provisional	99.95
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.95
COG1028	251	FabG Dehydrogenases with different specificities (	99.95
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.95
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.95
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.95
PRK06482	276	short chain dehydrogenase; Provisional	99.95
PRK06181	263	short chain dehydrogenase; Provisional	99.94
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.94
PRK06101	240	short chain dehydrogenase; Provisional	99.94
PRK07074	257	short chain dehydrogenase; Provisional	99.94
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.94
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.94
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.94
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.94
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.94
KOG1210|consensus	331		99.94
PRK07578	199	short chain dehydrogenase; Provisional	99.94
PRK07326	237	short chain dehydrogenase; Provisional	99.94
PRK07060	245	short chain dehydrogenase; Provisional	99.93
PRK08177	225	short chain dehydrogenase; Provisional	99.93
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.93
PRK07577	234	short chain dehydrogenase; Provisional	99.93
PRK06924	251	short chain dehydrogenase; Provisional	99.93
PRK12828	239	short chain dehydrogenase; Provisional	99.93
PRK09291	257	short chain dehydrogenase; Provisional	99.93
PRK09135	249	pteridine reductase; Provisional	99.93
PRK07806	248	short chain dehydrogenase; Provisional	99.93
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.93
PRK08324	681	short chain dehydrogenase; Validated	99.92
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.92
PRK12829	264	short chain dehydrogenase; Provisional	99.92
KOG1478|consensus	341		99.92
PRK12367	245	short chain dehydrogenase; Provisional	99.92
PRK07023	243	short chain dehydrogenase; Provisional	99.92
PRK08264	238	short chain dehydrogenase; Validated	99.92
KOG1204|consensus	253		99.91
PRK07041	230	short chain dehydrogenase; Provisional	99.91
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	99.91
PRK06953	222	short chain dehydrogenase; Provisional	99.9
PRK08017	256	oxidoreductase; Provisional	99.9
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.87
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.87
PRK08219	227	short chain dehydrogenase; Provisional	99.86
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.84
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.84
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.79
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.79
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.77
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	99.75
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.75
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.73
PRK06720	169	hypothetical protein; Provisional	99.73
PLN03209	576	translocon at the inner envelope of chloroplast su	99.72
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.71
PLN02653	340	GDP-mannose 4,6-dehydratase	99.69
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.65
PLN02214	342	cinnamoyl-CoA reductase	99.64
PLN02583	297	cinnamoyl-CoA reductase	99.62
PLN02650	351	dihydroflavonol-4-reductase	99.61
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.61
PLN02240	352	UDP-glucose 4-epimerase	99.6
PLN02572	442	UDP-sulfoquinovose synthase	99.6
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.6
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.59
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.59
PLN00198	338	anthocyanidin reductase; Provisional	99.57
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.55
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.54
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.52
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.47
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.46
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.45
KOG1502|consensus	327		99.44
PLN02686	367	cinnamoyl-CoA reductase	99.44
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.42
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.42
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.4
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.35
PLN02260	668	probable rhamnose biosynthetic enzyme	99.33
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.33
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.32
PLN02427	386	UDP-apiose/xylose synthase	99.32
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.31
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.23
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.22
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.21
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.2
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.2
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.18
KOG1371|consensus	343		99.17
PF08643	299	DUF1776: Fungal family of unknown function (DUF177	99.17
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.17
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.16
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.16
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.14
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.14
PLN02206	442	UDP-glucuronate decarboxylase	99.07
PRK07201	657	short chain dehydrogenase; Provisional	99.01
PLN02996	491	fatty acyl-CoA reductase	99.0
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.0
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.0
COG3320	382	Putative dehydrogenase domain of multifunctional n	98.95
CHL00194	317	ycf39 Ycf39; Provisional	98.91
PLN02778	298	3,5-epimerase/4-reductase	98.86
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.83
PLN02260	668	probable rhamnose biosynthetic enzyme	98.82
KOG0747|consensus	331		98.71
PLN02503	605	fatty acyl-CoA reductase 2	98.66
KOG1430|consensus	361		98.66
PRK05865	854	hypothetical protein; Provisional	98.66
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.66
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	98.65
KOG4022|consensus	236		98.58
PRK08309	177	short chain dehydrogenase; Provisional	98.53
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	98.45
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	98.37
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.23
PLN00016	378	RNA-binding protein; Provisional	98.23
KOG1221|consensus	467		98.2
COG4982	866	3-oxoacyl-[acyl-carrier protein]	98.19
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.18
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.13
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	98.12
KOG2774|consensus	366		98.01
KOG1429|consensus	350		98.01
KOG1202|consensus	2376		97.88
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.75
PRK12320	699	hypothetical protein; Provisional	97.74
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.72
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	97.69
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	97.56
KOG1431|consensus	315		97.47
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.45
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	97.38
KOG1203|consensus	411		97.26
KOG2733|consensus	423		97.25
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.2
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.17
KOG2865|consensus	391		97.17
COG2910	211	Putative NADH-flavin reductase [General function p	97.0
KOG1372|consensus	376		96.95
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	96.88
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.82
PRK14982	340	acyl-ACP reductase; Provisional	96.64
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	96.62
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.4
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.32
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.2
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.19
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.15
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.12
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.12
PTZ00325	321	malate dehydrogenase; Provisional	96.09
PLN00106	323	malate dehydrogenase	96.08
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.05
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.0
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.96
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.93
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.79
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	95.71
COG2130	340	Putative NADP-dependent oxidoreductases [General f	95.61
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	95.58
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.51
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	95.48
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.44
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.42
PRK05086	312	malate dehydrogenase; Provisional	95.36
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.32
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.31
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.08
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.06
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.02
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.95
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	94.87
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.83
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	94.69
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.68
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	94.62
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.61
PRK08223	287	hypothetical protein; Validated	94.59
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	94.58
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.56
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.55
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.5
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.48
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.48
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.48
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.45
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.38
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.38
PRK08328	231	hypothetical protein; Provisional	94.36
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.32
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	94.18
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.15
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	94.1
PRK14968	188	putative methyltransferase; Provisional	94.04
PRK09620	229	hypothetical protein; Provisional	94.03
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	93.64
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	93.64
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	93.64
PRK07411	390	hypothetical protein; Validated	93.63
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.46
KOG2013|consensus	603		93.45
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	93.44
COG3268	382	Uncharacterized conserved protein [Function unknow	93.43
KOG0023|consensus	360		93.42
KOG0024|consensus	354		93.39
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	93.37
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	93.36
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	93.33
PRK14851	679	hypothetical protein; Provisional	93.3
COG3007	398	Uncharacterized paraquat-inducible protein B [Func	93.25
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	93.18
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	93.17
PRK06849	389	hypothetical protein; Provisional	93.16
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.14
KOG1198|consensus	347		93.13
KOG4039|consensus	238		92.82
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	92.79
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	92.35
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	92.31
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	92.04
PLN00203	519	glutamyl-tRNA reductase	92.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	92.0
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	91.97
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.85
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	91.84
PRK14852	989	hypothetical protein; Provisional	91.78
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	91.48
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	91.45
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	91.35
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	91.26
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	91.06
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	91.01
PLN02602	350	lactate dehydrogenase	90.99
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.96
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	90.67
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.47
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	90.35
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	90.3
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.09
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	89.31
KOG1197|consensus	336		89.27
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	88.85
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	88.84
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.74
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	88.71
PRK05442	326	malate dehydrogenase; Provisional	88.63
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	88.61
COG4123	248	Predicted O-methyltransferase [General function pr	88.53
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	88.13
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	87.94
PRK07877	722	hypothetical protein; Provisional	87.68
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	87.57
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	87.54
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	87.26
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	87.2
KOG2015|consensus	422		87.01
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	86.24
PLN02740	381	Alcohol dehydrogenase-like	86.06
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	85.91
PRK14901	434	16S rRNA methyltransferase B; Provisional	85.68
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	85.61
PTZ00082	321	L-lactate dehydrogenase; Provisional	85.58
PRK08306	296	dipicolinate synthase subunit A; Reviewed	85.56
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	85.56
COG1926	220	Predicted phosphoribosyltransferases [General func	85.54
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	85.5
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	85.49
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	85.31
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	85.18
KOG1196|consensus	343		85.11
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	84.97
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	84.9
KOG0069|consensus	336		84.74
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	84.71
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	84.53
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	84.5
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	84.45
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	84.33
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	84.2
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	84.1
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	83.78
COG0569	225	TrkA K+ transport systems, NAD-binding component [	83.78
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	83.71
PRK14902	444	16S rRNA methyltransferase B; Provisional	83.7
PLN02827	378	Alcohol dehydrogenase-like	83.53
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	83.31
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	83.16
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	83.06
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	82.75
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	82.65
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	82.59
PF12076	164	Wax2_C: WAX2 C-terminal domain; InterPro: IPR02194	82.55
KOG0025|consensus	354		82.21
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	82.19
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	82.14
PF03808	172	Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp	81.98
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	81.9
PRK12480	330	D-lactate dehydrogenase; Provisional	81.65
cd06533	171	Glyco_transf_WecG_TagA The glycosyltransferase Wec	81.58
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	81.58
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	81.57
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	81.5
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	81.42
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	81.11
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	81.1
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	81.04
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	80.84
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	80.82
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	80.78
PRK06153	393	hypothetical protein; Provisional	80.76
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	80.76
KOG2336|consensus	422		80.54
PLN02586	360	probable cinnamyl alcohol dehydrogenase	80.51
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	80.42
PRK04148	134	hypothetical protein; Provisional	80.28
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	80.25
PRK06719	157	precorrin-2 dehydrogenase; Validated	80.15
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	80.1
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	80.1

>KOG1208|consensus

Probab=100.00  E-value=7.3e-43  Score=303.48  Aligned_cols=245  Identities=31%  Similarity=0.308  Sum_probs=214.6

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ...++.|++++ |||++      +|||+++   +.+|+.+|.+|+  +||.+++++++++|.+..+..++.+++||++|.
T Consensus        29 ~~~~~~~~~~v-VTGan------sGIG~et---a~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl   98 (314)
T KOG1208|consen   29 HGIDLSGKVAL-VTGAT------SGIGFET---ARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSL   98 (314)
T ss_pred             ccccCCCcEEE-EECCC------CchHHHH---HHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCH
Confidence            35778999999 99999      9999999   666778887776  599999999999999877788999999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++|++|++++++.++++|++|||||++.++...+.|++|.+|+||++|+|+|++.|+|.|+++++  +|||+|||..+  
T Consensus        99 ~SV~~fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~--~RIV~vsS~~~--  174 (314)
T KOG1208|consen   99 KSVRKFAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP--SRIVNVSSILG--  174 (314)
T ss_pred             HHHHHHHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC--CCEEEEcCccc--
Confidence            99999999999999999999999999988888899999999999999999999999999999988  99999999988  


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-c-ccccccccCCccchhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-T-VSKKWWRFGTPVRTFS  254 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~-~~~~~~~~~~~~~~~~  254 (292)
                          ..++++++++++..+.|+...+|+.||.++..+++.|++++.. ||.++++|||.|+ + +.+..   .+...+..
T Consensus       175 ----~~~~~~~~l~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~-~V~~~~~hPG~v~t~~l~r~~---~~~~~l~~  246 (314)
T KOG1208|consen  175 ----GGKIDLKDLSGEKAKLYSSDAAYALSKLANVLLANELAKRLKK-GVTTYSVHPGVVKTTGLSRVN---LLLRLLAK  246 (314)
T ss_pred             ----cCccchhhccchhccCccchhHHHHhHHHHHHHHHHHHHHhhc-CceEEEECCCcccccceecch---HHHHHHHH
Confidence                2335777887744445778889999999999999999999988 9999999999999 6 77622   23334555


Q ss_pred             hhhccccccCCHHHhhc-------ccccCCCCCccccCCc
Q psy4251         255 WISRVRPVTNFQVDLTG-------TAEKVGLSGLPDSEWM  287 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~-------~~~~~~~~G~~~~~~~  287 (292)
                      .+  ..++.++++++|+       .|+.+..+|.||.||.
T Consensus       247 ~l--~~~~~ks~~~ga~t~~~~a~~p~~~~~sg~y~~d~~  284 (314)
T KOG1208|consen  247 KL--SWPLTKSPEQGAATTCYAALSPELEGVSGKYFEDCA  284 (314)
T ss_pred             HH--HHHhccCHHHHhhheehhccCccccCcccccccccc
Confidence            55  5567799999998       7888999999998864

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=100.00  E-value=5e-37  Score=258.03  Aligned_cols=211  Identities=16%  Similarity=0.117  Sum_probs=185.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ...+++++ |||||      +|||+++   +.+|+++|++|+  +|+.++++++.+++++.+ +.++.++++|+++++++
T Consensus         3 ~~~~~~~l-ITGAS------sGIG~~~---A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~   71 (265)
T COG0300           3 PMKGKTAL-ITGAS------SGIGAEL---AKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEAL   71 (265)
T ss_pred             CCCCcEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHH
Confidence            45788999 99999      9999999   666888888776  599999999999999887 68999999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++.+++.+....||+||||||+.  +++.+.+.++.++++++|+.+...|+++++|.|.++..  |+||+|+|.++..+
T Consensus        72 ~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~--G~IiNI~S~ag~~p  149 (265)
T COG0300          72 ERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGA--GHIINIGSAAGLIP  149 (265)
T ss_pred             HHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ceEEEEechhhcCC
Confidence            999999999988999999999986  46788999999999999999999999999999999888  99999999999987


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       .+..|++||+++..|+++|+.|+.++||+|.+|+||.|. ++++.....  . ...  .
T Consensus       150 ~------------p-------~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~~~~~--~-~~~--~  205 (265)
T COG0300         150 T------------P-------YMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAKGSD--V-YLL--S  205 (265)
T ss_pred             C------------c-------chHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccccccccc--c-ccc--c
Confidence            6            3       788999999999999999999999999999999999999 998622111  0 000  0


Q ss_pred             hccccccCCHHHhhc
Q psy4251         257 SRVRPVTNFQVDLTG  271 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~  271 (292)
                        ....+.+|++.|+
T Consensus       206 --~~~~~~~~~~va~  218 (265)
T COG0300         206 --PGELVLSPEDVAE  218 (265)
T ss_pred             --chhhccCHHHHHH
Confidence              1224678888887

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=100.00  E-value=8.7e-37  Score=249.61  Aligned_cols=213  Identities=17%  Similarity=0.139  Sum_probs=180.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .+++|+++ |||||      +|||.++   +.+|++.|+.|+  +|+.++++++++++.+    +++..+..|++|.+++
T Consensus         3 ~~~~kv~l-ITGAS------SGiG~A~---A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~   68 (246)
T COG4221           3 TLKGKVAL-ITGAS------SGIGEAT---ARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAV   68 (246)
T ss_pred             CCCCcEEE-EecCc------chHHHHH---HHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHH
Confidence            45678888 99999      9999999   666778888877  4999999999998864    5789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++.+.+++++||+||||||.+  .+..+.+.++|+.++++|+.|.++.+++++|.|.+++.  |+||++||.++..+
T Consensus        69 ~~~i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~--G~IiN~~SiAG~~~  146 (246)
T COG4221          69 EAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKS--GHIINLGSIAGRYP  146 (246)
T ss_pred             HHHHHHHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCC--ceEEEecccccccc
Confidence            999999999999999999999997  36678899999999999999999999999999999988  99999999998877


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|+++|+++..|++.|.+++..++|||.+|+||.|. ++.......+-..+.-...
T Consensus       147 y------------~-------~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y  207 (246)
T COG4221         147 Y------------P-------GGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVY  207 (246)
T ss_pred             C------------C-------CCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHh
Confidence            6            3       788999999999999999999999999999999999997 6555543222111211111


Q ss_pred             hccccccCCHHHhhc
Q psy4251         257 SRVRPVTNFQVDLTG  271 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~  271 (292)
                        ......+|++.|+
T Consensus       208 --~~~~~l~p~dIA~  220 (246)
T COG4221         208 --KGGTALTPEDIAE  220 (246)
T ss_pred             --ccCCCCCHHHHHH
Confidence              2223568888876

>PRK05854 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-36  Score=266.72  Aligned_cols=246  Identities=26%  Similarity=0.240  Sum_probs=193.1

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ...+++||+++ ||||+      +|||+++   +.+|+.+|+.|+  +|+.++++++.+++.+..++.++.+++||++|.
T Consensus         8 ~~~~l~gk~~l-ITGas------~GIG~~~---a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~   77 (313)
T PRK05854          8 TVPDLSGKRAV-VTGAS------DGLGLGL---ARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSL   77 (313)
T ss_pred             cCcccCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCH
Confidence            35678999999 99999      9999999   556667787776  499999999999998776667899999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccCC-CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFGL-GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~~-~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++++.+++++||+||||||++.+ ..+.+.++++.++++|++|++++++.++|.|.++ .  +|||++||.++.
T Consensus        78 ~sv~~~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~--~riv~vsS~~~~  154 (313)
T PRK05854         78 ASVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-R--ARVTSQSSIAAR  154 (313)
T ss_pred             HHHHHHHHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-C--CCeEEEechhhc
Confidence            99999999999999999999999998753 3457889999999999999999999999999765 4  899999999876


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-cccccccccC-----
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKKWWRFG-----  247 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~~~~~~-----  247 (292)
                      .+.     +++++++.  ...+.+...|+.||+++.+|++++++++.  ..||+||+++||+|. ++.+......     
T Consensus       155 ~~~-----~~~~~~~~--~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~  227 (313)
T PRK05854        155 RGA-----INWDDLNW--ERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARPEVGRDKDT  227 (313)
T ss_pred             CCC-----cCcccccc--cccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCccccccccccchhH
Confidence            543     23444433  33455788999999999999999998753  568999999999999 8875432100     


Q ss_pred             CccchhhhhhccccccCCHHHhhc-------ccccCCCCCccccCC
Q psy4251         248 TPVRTFSWISRVRPVTNFQVDLTG-------TAEKVGLSGLPDSEW  286 (292)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~a~-------~~~~~~~~G~~~~~~  286 (292)
                      +...++.++.....+.++++++|.       ++..  .+|.||.++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~ga~~~l~~a~~~~~--~~g~~~~~~  271 (313)
T PRK05854        228 LMVRLIRSLSARGFLVGTVESAILPALYAATSPDA--EGGAFYGPR  271 (313)
T ss_pred             HHHHHHHHHhhcccccCCHHHHHHHhhheeeCCCC--CCCcEECCC
Confidence            011222222111234678999887       2333  369999875

>KOG1205|consensus

Probab=100.00  E-value=3.3e-37  Score=260.97  Aligned_cols=192  Identities=18%  Similarity=0.182  Sum_probs=171.3

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE--EEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL--FYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~--v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ...++||+|+ |||||      +|||.++   +.+++.+|+.  +++|..++++.+.+++++..+..++..++||++|.+
T Consensus         7 ~e~~~~kvVv-ITGAS------sGIG~~l---A~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~   76 (282)
T KOG1205|consen    7 MERLAGKVVL-ITGAS------SGIGEAL---AYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEE   76 (282)
T ss_pred             HHHhCCCEEE-EeCCC------cHHHHHH---HHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHH
Confidence            4678999999 99999      9999999   6777788875  446899999999999998886557999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++.++++++.+++|++|+||||||+..  ...+.+.+++...|++|++|++.++++++|+|++++.  |+||+++|.++.
T Consensus        77 ~~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~--GhIVvisSiaG~  154 (282)
T KOG1205|consen   77 SVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRND--GHIVVISSIAGK  154 (282)
T ss_pred             HHHHHHHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCC--CeEEEEeccccc
Confidence            999999999999999999999999974  3456677889999999999999999999999999887  999999999999


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCC--eEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYK--IALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~g--i~v~~v~PG~v~-~~~~~~  243 (292)
                      .+.            |       ....|++||+|+.+|+++|..|+.+.+  |++ +|+||+|+ ++....
T Consensus       155 ~~~------------P-------~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te~~~~~  205 (282)
T KOG1205|consen  155 MPL------------P-------FRSIYSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETEFTGKE  205 (282)
T ss_pred             cCC------------C-------cccccchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeecccchh
Confidence            876            3       556999999999999999999999876  666 99999999 866553

>KOG1201|consensus

Probab=100.00  E-value=4.1e-36  Score=251.96  Aligned_cols=202  Identities=18%  Similarity=0.263  Sum_probs=179.5

Q ss_pred             HHHHhhcccCCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCC
Q psy4251           7 YLKQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSA   84 (292)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~   84 (292)
                      ++.+-...-++.+.++.+|++|+ ||||+      +|||+++   +++++++|..++  ..+.+..++..+++++.   +
T Consensus        20 ~~~s~~~~~l~~~~k~v~g~~vL-ITGgg------~GlGr~i---alefa~rg~~~vl~Din~~~~~etv~~~~~~---g   86 (300)
T KOG1201|consen   20 LLESLIKLLLPKPLKSVSGEIVL-ITGGG------SGLGRLI---ALEFAKRGAKLVLWDINKQGNEETVKEIRKI---G   86 (300)
T ss_pred             HHHHHHHHhcccchhhccCCEEE-EeCCC------chHHHHH---HHHHHHhCCeEEEEeccccchHHHHHHHHhc---C
Confidence            34444444445578999999999 99999      9999999   777888888665  37788899999999876   3


Q ss_pred             ceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCC
Q psy4251          85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL  162 (292)
Q Consensus        85 ~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~  162 (292)
                      ++..+.||+|+.+++.+.+++++++.|++|+||||||+..  +..+.+.+.+++++++|+.|++..+++|+|.|.+.+. 
T Consensus        87 ~~~~y~cdis~~eei~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~-  165 (300)
T KOG1201|consen   87 EAKAYTCDISDREEIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNN-  165 (300)
T ss_pred             ceeEEEecCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCC-
Confidence            8999999999999999999999999999999999999984  6788899999999999999999999999999998888 


Q ss_pred             CcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC---CCeEEEEecCCccc-c
Q psy4251         163 FARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK---YKIALSSRHCCWKI-T  238 (292)
Q Consensus       163 ~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~---~gi~v~~v~PG~v~-~  238 (292)
                       |+||.|+|.++..+.            +       +...|++||+|+.+|.++|..|+..   .||+...|+|++++ +
T Consensus       166 -GHIV~IaS~aG~~g~------------~-------gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tg  225 (300)
T KOG1201|consen  166 -GHIVTIASVAGLFGP------------A-------GLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTG  225 (300)
T ss_pred             -ceEEEehhhhcccCC------------c-------cchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecccc
Confidence             999999999999887            3       7889999999999999999999853   47999999999999 8


Q ss_pred             cccc
Q psy4251         239 VSKK  242 (292)
Q Consensus       239 ~~~~  242 (292)
                      |...
T Consensus       226 mf~~  229 (300)
T KOG1201|consen  226 MFDG  229 (300)
T ss_pred             ccCC
Confidence            8876

>KOG1200|consensus

Probab=100.00  E-value=5.7e-35  Score=228.58  Aligned_cols=223  Identities=15%  Similarity=0.122  Sum_probs=183.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .+..|.++ |||++      +|||+++   +..|+..|+.|++  ++...+++++..|..   .+....++||+++.+++
T Consensus        11 r~~sk~~~-vtGg~------sGIGrAi---a~~la~~Garv~v~dl~~~~A~ata~~L~g---~~~h~aF~~DVS~a~~v   77 (256)
T KOG1200|consen   11 RLMSKVAA-VTGGS------SGIGRAI---AQLLAKKGARVAVADLDSAAAEATAGDLGG---YGDHSAFSCDVSKAHDV   77 (256)
T ss_pred             HHhcceeE-EecCC------chHHHHH---HHHHHhcCcEEEEeecchhhHHHHHhhcCC---CCccceeeeccCcHHHH
Confidence            35567888 99999      9999999   8889999999886  566667776666642   14777889999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh--cCCCCcEEEEEcCcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK--GAKLFARVVVVSSESHR  175 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~--~~~~~~~iV~vsS~~~~  175 (292)
                      +..+++..+.++++++||||||+..  -...+..++|+..+.+|+.|.|++++++...|..  +++  .+||+|||+.+.
T Consensus        78 ~~~l~e~~k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~--~sIiNvsSIVGk  155 (256)
T KOG1200|consen   78 QNTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQG--LSIINVSSIVGK  155 (256)
T ss_pred             HHHHHHHHHhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCC--ceEEeehhhhcc
Confidence            9999999999999999999999974  3456688999999999999999999999998543  334  699999999999


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      +++.                   +...|+++|.++..|+++.|+|++.+|||||.|.||++. +|...+++     ....
T Consensus       156 iGN~-------------------GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~mp~-----~v~~  211 (256)
T KOG1200|consen  156 IGNF-------------------GQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAMPP-----KVLD  211 (256)
T ss_pred             cccc-------------------cchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhhcCH-----HHHH
Confidence            8873                   889999999999999999999999999999999999999 99999876     3444


Q ss_pred             hhhcccc--ccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRP--VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+-++-|  .+..+||.|.      ++.....+|.-+
T Consensus       212 ki~~~iPmgr~G~~EevA~~V~fLAS~~ssYiTG~t~  248 (256)
T KOG1200|consen  212 KILGMIPMGRLGEAEEVANLVLFLASDASSYITGTTL  248 (256)
T ss_pred             HHHccCCccccCCHHHHHHHHHHHhccccccccceeE
Confidence            4322222  3678888886      555555666543

>PRK08339 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6.4e-34  Score=245.18  Aligned_cols=230  Identities=13%  Similarity=0.047  Sum_probs=181.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.. +.++.++++|++|+++
T Consensus         4 ~~l~~k~~l-ItGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~   72 (263)
T PRK08339          4 IDLSGKLAF-TTASS------KGIGFGV---ARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKRED   72 (263)
T ss_pred             cCCCCCEEE-EeCCC------CcHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHH
Confidence            458899999 99999      9999999   666777787766  488888888888886543 3578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++. +++++|++|||||...  +..+.+.++|++++++|+.+++.++++++|.|++++.  |+||++||..+..
T Consensus        73 i~~~~~~~~-~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~--g~Ii~isS~~~~~  149 (263)
T PRK08339         73 LERTVKELK-NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGF--GRIIYSTSVAIKE  149 (263)
T ss_pred             HHHHHHHHH-hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--CEEEEEcCccccC
Confidence            999999986 5899999999999763  4567789999999999999999999999999987777  9999999987665


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc-----CC-c
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF-----GT-P  249 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~-----~~-~  249 (292)
                      +.            +       ....|+++|+++..|++++++|+.++||+||+|+||+|+ ++.......     +. +
T Consensus       150 ~~------------~-------~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~  210 (263)
T PRK08339        150 PI------------P-------NIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSV  210 (263)
T ss_pred             CC------------C-------cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCH
Confidence            43            2       567899999999999999999999999999999999999 876432110     00 0


Q ss_pred             cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ......+..  ....+.+|++.|.      ++.....+|+.+
T Consensus       211 ~~~~~~~~~~~p~~r~~~p~dva~~v~fL~s~~~~~itG~~~  252 (263)
T PRK08339        211 EEALQEYAKPIPLGRLGEPEEIGYLVAFLASDLGSYINGAMI  252 (263)
T ss_pred             HHHHHHHhccCCcccCcCHHHHHHHHHHHhcchhcCccCceE
Confidence            011111111  1123467888876      445556777754

>PRK08303 short chain dehydrogenase; Provisional

Probab=100.00  E-value=7.6e-34  Score=249.35  Aligned_cols=238  Identities=13%  Similarity=0.093  Sum_probs=179.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC----------HHHHHHHHHHHHhhCCCCceEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC----------WDKANDAISKILTEKPSAQCIA   88 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~----------~~~~~~~~~~l~~~~~~~~~~~   88 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+..|+.|+.  |+          .++++++.+++...  +.++.+
T Consensus         4 ~~l~~k~~l-ITGgs------~GIG~ai---a~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~   71 (305)
T PRK08303          4 KPLRGKVAL-VAGAT------RGAGRGI---AVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA--GGRGIA   71 (305)
T ss_pred             cCCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc--CCceEE
Confidence            457899999 99999      9999999   5556678877664  66          24566666667544  457888


Q ss_pred             EEccCCChHHHHHHHHHHHHhCCCccEEEEcc-ccc------CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC
Q psy4251          89 MELDLCRLKSVKKFAEEYQKKFRSLNILVLNA-GVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK  161 (292)
Q Consensus        89 ~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA-g~~------~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~  161 (292)
                      ++||++|+++++++++++.+++++||+||||| |..      .+..+.+.++|++.+++|+.++++++++++|.|.+++.
T Consensus        72 ~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~  151 (305)
T PRK08303         72 VQVDHLVPEQVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPG  151 (305)
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCC
Confidence            99999999999999999999999999999999 752      34456678889999999999999999999999987766


Q ss_pred             CCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         162 LFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       162 ~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                        |+||++||..+.....                .+.....|++||+++.+|+++++.|+.+.||+||+|+||+|+ ++.
T Consensus       152 --g~IV~isS~~~~~~~~----------------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~  213 (305)
T PRK08303        152 --GLVVEITDGTAEYNAT----------------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMM  213 (305)
T ss_pred             --cEEEEECCccccccCc----------------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHH
Confidence              9999999976543210                111356799999999999999999999999999999999999 875


Q ss_pred             ccccccCCccchhhhhhcc--ccccCCHHHhhc------ccc-cCCCCCccccCCccc
Q psy4251         241 KKWWRFGTPVRTFSWISRV--RPVTNFQVDLTG------TAE-KVGLSGLPDSEWMWH  289 (292)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~------~~~-~~~~~G~~~~~~~w~  289 (292)
                      ...... ....+.......  .....+|++.|.      ++. ....+|+++.++.|+
T Consensus       214 ~~~~~~-~~~~~~~~~~~~p~~~~~~~peevA~~v~fL~s~~~~~~itG~~l~~~~~~  270 (305)
T PRK08303        214 LDAFGV-TEENWRDALAKEPHFAISETPRYVGRAVAALAADPDVARWNGQSLSSGQLA  270 (305)
T ss_pred             HHhhcc-CccchhhhhccccccccCCCHHHHHHHHHHHHcCcchhhcCCcEEEhHHHH
Confidence            432100 000110111011  123457999887      333 345799998776654

>PRK06197 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-33  Score=245.76  Aligned_cols=245  Identities=26%  Similarity=0.254  Sum_probs=188.1

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  +|+.++++++.+++.+..++.++.++++|++|.+
T Consensus        11 ~~~~~~k~vl-ItGas------~gIG~~~---a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~   80 (306)
T PRK06197         11 IPDQSGRVAV-VTGAN------TGLGYET---AAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLA   80 (306)
T ss_pred             cccCCCCEEE-EcCCC------CcHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHH
Confidence            3678999999 99999      9999999   555667776654  5888888888888876655568899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++++.++++++|+||||||...+....+.++++.++++|++|++.+++.++|.|.+.+.  ++||++||.++...
T Consensus        81 ~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~--~~iV~vSS~~~~~~  158 (306)
T PRK06197         81 SVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPG--SRVVTVSSGGHRIR  158 (306)
T ss_pred             HHHHHHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCC--CEEEEECCHHHhcc
Confidence            9999999999999999999999998765566788999999999999999999999999987766  89999999876542


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEE--ecCCccc-cccccccccCCccchhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSS--RHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~--v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      ..    ..+++...  +..+.+...|+.||+++++|++++++++.+.|++|++  ++||+|+ ++.++.+..  ...+..
T Consensus       159 ~~----~~~~~~~~--~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~~~~~~--~~~~~~  230 (306)
T PRK06197        159 AA----IHFDDLQW--ERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARNLPRA--LRPVAT  230 (306)
T ss_pred             CC----CCccccCc--ccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcccccCcHH--HHHHHH
Confidence            11    12222222  2234467899999999999999999999877866654  5799999 988765321  112222


Q ss_pred             hhhccccccCCHHHhhc-----ccccCCCCCccccCC
Q psy4251         255 WISRVRPVTNFQVDLTG-----TAEKVGLSGLPDSEW  286 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~-----~~~~~~~~G~~~~~~  286 (292)
                      .+  .+.+.+++++++.     .......+|.||.++
T Consensus       231 ~~--~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~  265 (306)
T PRK06197        231 VL--APLLAQSPEMGALPTLRAATDPAVRGGQYYGPD  265 (306)
T ss_pred             HH--HhhhcCCHHHHHHHHHHHhcCCCcCCCeEEccC
Confidence            22  2224678888876     222223478888643

>PRK07063 short chain dehydrogenase; Provisional

Probab=100.00  E-value=5.3e-33  Score=238.97  Aligned_cols=240  Identities=14%  Similarity=0.120  Sum_probs=187.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +..|+++|+.|+  .|+.+++++..+++.+...+.++.++++|++|++++
T Consensus         4 ~l~~k~vl-VtGas------~gIG~~~---a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~   73 (260)
T PRK07063          4 RLAGKVAL-VTGAA------QGIGAAI---ARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASV   73 (260)
T ss_pred             ccCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHH
Confidence            47899999 99999      9999999   555667787776  488888888888887643356889999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||...  +..+.+.++|+.++++|+.+++.++++++|.|.+++.  ++||++||..+..+
T Consensus        74 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~  151 (260)
T PRK07063         74 AAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGR--GSIVNIASTHAFKI  151 (260)
T ss_pred             HHHHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCC--eEEEEECChhhccC
Confidence            9999999999999999999999753  4456778899999999999999999999999987766  89999999876654


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC-ccchhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT-PVRTFSW  255 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~-~~~~~~~  255 (292)
                      .            +       +...|++||+++..+++++++++.++||+||+|+||+|+ ++.+....... +......
T Consensus       152 ~------------~-------~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~  212 (260)
T PRK07063        152 I------------P-------GCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAE  212 (260)
T ss_pred             C------------C-------CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHH
Confidence            3            2       567899999999999999999999999999999999999 88654321100 0011111


Q ss_pred             hhc--cccccCCHHHhhc------ccccCCCCCccc-cCCccccCC
Q psy4251         256 ISR--VRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWHYQY  292 (292)
Q Consensus       256 ~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~~~~  292 (292)
                      ...  ......+|++.|.      ++.....+|+.+ .|.-|+..|
T Consensus       213 ~~~~~~~~r~~~~~~va~~~~fl~s~~~~~itG~~i~vdgg~~~~~  258 (260)
T PRK07063        213 TLALQPMKRIGRPEEVAMTAVFLASDEAPFINATCITIDGGRSVLY  258 (260)
T ss_pred             HHhcCCCCCCCCHHHHHHHHHHHcCccccccCCcEEEECCCeeeec
Confidence            101  1223568888887      444556777754 355455443

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-33  Score=239.50  Aligned_cols=228  Identities=16%  Similarity=0.180  Sum_probs=176.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+.-+....++..+++.+.  +.++.++++|+++.++++
T Consensus         4 ~~l~~k~~l-ItGas------~gIG~ai---a~~l~~~G~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~   71 (251)
T PRK12481          4 FDLNGKVAI-ITGCN------TGLGQGM---AIGLAKAGADIVGVGVAEAPETQAQVEAL--GRKFHFITADLIQQKDID   71 (251)
T ss_pred             cccCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEecCchHHHHHHHHHHc--CCeEEEEEeCCCCHHHHH
Confidence            357899999 99999      9999999   66677888888752222233444455443  457899999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYS  177 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~  177 (292)
                      ++++++.+.++++|+||||||+..  +..+.+.++|++++++|+.+++.++++++|.|.+++ .  ++||++||..+..+
T Consensus        72 ~~~~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~--g~ii~isS~~~~~~  149 (251)
T PRK12481         72 SIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNG--GKIINIASMLSFQG  149 (251)
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCC--CEEEEeCChhhcCC
Confidence            999999999999999999999863  355678899999999999999999999999997653 5  89999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC-ccchhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT-PVRTFSW  255 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~-~~~~~~~  255 (292)
                      .            +       ....|++||+++..|+++++.++.++||+||+|+||+|+ ++.+....... .......
T Consensus       150 ~------------~-------~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~  210 (251)
T PRK12481        150 G------------I-------RVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILER  210 (251)
T ss_pred             C------------C-------CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhc
Confidence            4            2       456899999999999999999999999999999999999 88765321100 0111111


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +  ......+|++.|.      ++.....+|+.+
T Consensus       211 ~--p~~~~~~peeva~~~~~L~s~~~~~~~G~~i  242 (251)
T PRK12481        211 I--PASRWGTPDDLAGPAIFLSSSASDYVTGYTL  242 (251)
T ss_pred             C--CCCCCcCHHHHHHHHHHHhCccccCcCCceE
Confidence            1  1223468888887      444556677654

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=2.3e-33  Score=240.20  Aligned_cols=221  Identities=10%  Similarity=0.012  Sum_probs=172.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++||+++ ||||+      +  |||+++   +.+|++.|+.|+.  |+ ++.++..+++.    +.++.+++||++|.+
T Consensus         4 ~l~~k~~l-ItGas------~~~gIG~a~---a~~la~~G~~Vi~~~r~-~~~~~~~~~~~----~~~~~~~~~Dl~~~~   68 (252)
T PRK06079          4 ILSGKKIV-VMGVA------NKRSIAWGC---AQAIKDQGATVIYTYQN-DRMKKSLQKLV----DEEDLLVECDVASDE   68 (252)
T ss_pred             ccCCCEEE-EeCCC------CCCchHHHH---HHHHHHCCCEEEEecCc-hHHHHHHHhhc----cCceeEEeCCCCCHH
Confidence            47899999 99996      5  999999   6667788888774  66 34444444443    236888999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      +++++++++.++++++|+||||||+..      +..+.+.++|+..+++|+.+++.+++.++|+|.+  .  ++||+++|
T Consensus        69 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~--~--g~Iv~iss  144 (252)
T PRK06079         69 SIERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP--G--ASIVTLTY  144 (252)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc--C--ceEEEEec
Confidence            999999999999999999999999863      4456788999999999999999999999999964  4  89999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV  250 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~  250 (292)
                      .++..+.            +       ....|++||+++.+|+++++.|+.++||+||+|+||+|+ ++.+.....   .
T Consensus       145 ~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~---~  202 (252)
T PRK06079        145 FGSERAI------------P-------NYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGH---K  202 (252)
T ss_pred             cCccccC------------C-------cchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCCh---H
Confidence            8766543            2       567899999999999999999999999999999999999 876443110   0


Q ss_pred             chhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .......+  ......+|++.|.      ++.....+|+.+
T Consensus       203 ~~~~~~~~~~p~~r~~~pedva~~~~~l~s~~~~~itG~~i  243 (252)
T PRK06079        203 DLLKESDSRTVDGVGVTIEEVGNTAAFLLSDLSTGVTGDII  243 (252)
T ss_pred             HHHHHHHhcCcccCCCCHHHHHHHHHHHhCcccccccccEE
Confidence            11111101  1123568888887      455566677754

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=3.5e-33  Score=241.54  Aligned_cols=223  Identities=12%  Similarity=0.042  Sum_probs=170.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++||+++ ||||+      +  |||+++   +.+|++.|+.|+.  |+.+..++ .+++.+.. + ...++++|++|.+
T Consensus         4 ~l~~k~~l-VTGas------~~~GIG~ai---A~~la~~Ga~V~~~~r~~~~~~~-~~~~~~~~-g-~~~~~~~Dv~d~~   70 (271)
T PRK06505          4 LMQGKRGL-IMGVA------NDHSIAWGI---AKQLAAQGAELAFTYQGEALGKR-VKPLAESL-G-SDFVLPCDVEDIA   70 (271)
T ss_pred             ccCCCEEE-EeCCC------CCCcHHHHH---HHHHHhCCCEEEEecCchHHHHH-HHHHHHhc-C-CceEEeCCCCCHH
Confidence            36789999 99998      8  999999   6667788888764  65433333 34443332 2 2357899999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      +++++++++.+++++||+||||||+..      ++.+.+.++|++.+++|+.+++.++++++|+|.+  .  |+||++||
T Consensus        71 ~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~--~--G~Iv~isS  146 (271)
T PRK06505         71 SVDAVFEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD--G--GSMLTLTY  146 (271)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc--C--ceEEEEcC
Confidence            999999999999999999999999863      3456788999999999999999999999999973  4  89999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV  250 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~  250 (292)
                      .++..+.            +       ....|++||+++..|+++++.|+.++||+||+|+||+|+ ++.+.....   .
T Consensus       147 ~~~~~~~------------~-------~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~---~  204 (271)
T PRK06505        147 GGSTRVM------------P-------NYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDA---R  204 (271)
T ss_pred             CCccccC------------C-------ccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcch---H
Confidence            8765543            2       567899999999999999999999999999999999999 875432110   0


Q ss_pred             chhhhhhccc--cccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISRVR--PVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~~~--~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....+..+..  ....+|+|.|.      ++.....+|+.+
T Consensus       205 ~~~~~~~~~~p~~r~~~peeva~~~~fL~s~~~~~itG~~i  245 (271)
T PRK06505        205 AIFSYQQRNSPLRRTVTIDEVGGSALYLLSDLSSGVTGEIH  245 (271)
T ss_pred             HHHHHHhhcCCccccCCHHHHHHHHHHHhCccccccCceEE
Confidence            1111111111  22458888887      444556677754

>PRK06196 oxidoreductase; Provisional

Probab=100.00  E-value=2.4e-32  Score=241.42  Aligned_cols=241  Identities=29%  Similarity=0.299  Sum_probs=184.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+.+|+.|+  .|+.+++++..+++.      .+.++++|++|.++
T Consensus        22 ~~l~~k~vl-ITGas------ggIG~~~---a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~   85 (315)
T PRK06196         22 HDLSGKTAI-VTGGY------SGLGLET---TRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLES   85 (315)
T ss_pred             CCCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHH
Confidence            467899999 99999      9999999   555667777766  488888877776653      37789999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++++.++++++|+||||||+..+..+.+.++|+..+++|+.++++++++++|.|.+++.  ++||++||..+..+.
T Consensus        86 v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~--~~iV~vSS~~~~~~~  163 (315)
T PRK06196         86 VRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAG--ARVVALSSAGHRRSP  163 (315)
T ss_pred             HHHHHHHHHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CeEEEECCHHhccCC
Confidence            999999999989999999999998765566678899999999999999999999999988766  899999998655432


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc-cchhhhh
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP-VRTFSWI  256 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~-~~~~~~~  256 (292)
                      .     .+++...  ...+.+...|+.||+++..+++.+++++...||++++|+||+|. ++.+........ ..+....
T Consensus       164 ~-----~~~~~~~--~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~  236 (315)
T PRK06196        164 I-----RWDDPHF--TRGYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEH  236 (315)
T ss_pred             C-----CccccCc--cCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhh
Confidence            1     2222211  22344678999999999999999999999889999999999999 887654321000 0011100


Q ss_pred             h-ccccccCCHHHhhc-------ccccCCCCCccccCC
Q psy4251         257 S-RVRPVTNFQVDLTG-------TAEKVGLSGLPDSEW  286 (292)
Q Consensus       257 ~-~~~~~~~~~~~~a~-------~~~~~~~~G~~~~~~  286 (292)
                      . .+.+...+|+++|.       .+.....+|.|+.+|
T Consensus       237 ~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~g~~~~~~  274 (315)
T PRK06196        237 GNPIDPGFKTPAQGAATQVWAATSPQLAGMGGLYCEDC  274 (315)
T ss_pred             hhhhhhhcCCHhHHHHHHHHHhcCCccCCCCCeEeCCC
Confidence            0 01123578999987       345556678888775

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=100.00  E-value=5.1e-33  Score=242.51  Aligned_cols=228  Identities=13%  Similarity=0.031  Sum_probs=175.8

Q ss_pred             CCCCCCceEEEEcCC--CCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhC-------CCC----c
Q psy4251          20 ASTYNGCLAILCTGD--MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEK-------PSA----Q   85 (292)
Q Consensus        20 ~~~l~g~~~vlItGa--~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~-------~~~----~   85 (292)
                      ..+|+||+++ ||||  +      +|||+++   +..|++.|+.|+. |+.++++++..++++..       +..    .
T Consensus         4 ~~~l~gk~al-ITGa~~s------~GIG~a~---A~~la~~Ga~Vv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (303)
T PLN02730          4 PIDLRGKRAF-IAGVADD------NGYGWAI---AKALAAAGAEILVGTWVPALNIFETSLRRGKFDESRKLPDGSLMEI   73 (303)
T ss_pred             CcCCCCCEEE-EeCCCCC------CcHHHHH---HHHHHHCCCEEEEEeCcchhhHHHHhhhccccchhhhcccccccCc
Confidence            3569999999 9999  9      9999999   7778889988876 88888888887775321       111    2


Q ss_pred             eEEEEccC--CC------------------hHHHHHHHHHHHHhCCCccEEEEccccc----CCCCCCCCcchhhhhhhh
Q psy4251          86 CIAMELDL--CR------------------LKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVN  141 (292)
Q Consensus        86 ~~~~~~Dl--s~------------------~~~v~~~~~~~~~~~~~id~lI~nAg~~----~~~~~~~~~~~~~~~~vN  141 (292)
                      ...+++|+  ++                  .++++++++++.+++++||+||||||+.    .+..+.+.++|++++++|
T Consensus        74 ~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN  153 (303)
T PLN02730         74 TKVYPLDAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISAS  153 (303)
T ss_pred             CeeeecceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHH
Confidence            46789999  43                  3489999999999999999999999753    356778899999999999


Q ss_pred             hhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhh-hHHHHhHHHHHHHHHHHHhH
Q psy4251         142 HLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAM-TAYNDTKLCNVLFGEKLATL  220 (292)
Q Consensus       142 ~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~la~~  220 (292)
                      +.+++.++++++|.|.++    |+||++||..+..+.            +       .. ..|++||+++..|+++++.|
T Consensus       154 ~~~~~~l~~~~~p~m~~~----G~II~isS~a~~~~~------------p-------~~~~~Y~asKaAl~~l~~~la~E  210 (303)
T PLN02730        154 SYSFVSLLQHFGPIMNPG----GASISLTYIASERII------------P-------GYGGGMSSAKAALESDTRVLAFE  210 (303)
T ss_pred             hHHHHHHHHHHHHHHhcC----CEEEEEechhhcCCC------------C-------CCchhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999753    899999998776543            1       33 47999999999999999999


Q ss_pred             hcC-CCeEEEEecCCccc-cccccccccCCccchhhhh-hccc-cccCCHHHhhc------ccccCCCCCccc
Q psy4251         221 WYK-YKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI-SRVR-PVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       221 ~~~-~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +.+ +||+||+|+||+|+ +|.+..+..   ....... ...+ ....+|++.+.      ++.....+|+.+
T Consensus       211 l~~~~gIrVn~V~PG~v~T~~~~~~~~~---~~~~~~~~~~~pl~r~~~peevA~~~~fLaS~~a~~itG~~l  280 (303)
T PLN02730        211 AGRKYKIRVNTISAGPLGSRAAKAIGFI---DDMIEYSYANAPLQKELTADEVGNAAAFLASPLASAITGATI  280 (303)
T ss_pred             hCcCCCeEEEEEeeCCccCchhhccccc---HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEE
Confidence            985 79999999999999 887653110   0111111 0011 22457888776      445556677754

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=8.6e-33  Score=237.53  Aligned_cols=227  Identities=10%  Similarity=-0.038  Sum_probs=170.8

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      +..+++||+++ ||||+      +  |||+++   +.+|++.|+.|+  .|+.+. .+..+++.+..  ....+++||++
T Consensus         4 ~~~~~~~k~~l-ItGas------~g~GIG~a~---a~~la~~G~~v~l~~r~~~~-~~~~~~~~~~~--~~~~~~~~D~~   70 (258)
T PRK07533          4 PLLPLAGKRGL-VVGIA------NEQSIAWGC---ARAFRALGAELAVTYLNDKA-RPYVEPLAEEL--DAPIFLPLDVR   70 (258)
T ss_pred             cccccCCCEEE-EECCC------CCCcHHHHH---HHHHHHcCCEEEEEeCChhh-HHHHHHHHHhh--ccceEEecCcC
Confidence            44668899999 99998      6  899999   555667787765  366432 22334444332  23567899999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVV  168 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~  168 (292)
                      |.++++++++++.++++++|++|||||+..      +..+.+.++|++++++|+.++++++++++|.|++  .  ++||+
T Consensus        71 ~~~~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~--~--g~Ii~  146 (258)
T PRK07533         71 EPGQLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN--G--GSLLT  146 (258)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc--C--CEEEE
Confidence            999999999999999999999999999853      3456788999999999999999999999999963  4  89999


Q ss_pred             EcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC
Q psy4251         169 VSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG  247 (292)
Q Consensus       169 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~  247 (292)
                      +||..+..+.            +       ....|++||+++.+|+++++.|+.++||+||+|+||+|+ ++.+......
T Consensus       147 iss~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~  207 (258)
T PRK07533        147 MSYYGAEKVV------------E-------NYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFD  207 (258)
T ss_pred             EeccccccCC------------c-------cchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcH
Confidence            9998665432            2       567899999999999999999999999999999999999 8865432110


Q ss_pred             -CccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         248 -TPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       248 -~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ....+....  ......+|++.|.      ++.....+|+.+
T Consensus       208 ~~~~~~~~~~--p~~r~~~p~dva~~~~~L~s~~~~~itG~~i  248 (258)
T PRK07533        208 ALLEDAAERA--PLRRLVDIDDVGAVAAFLASDAARRLTGNTL  248 (258)
T ss_pred             HHHHHHHhcC--CcCCCCCHHHHHHHHHHHhChhhccccCcEE
Confidence             000111111  1123457888876      444556778755

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=9.4e-33  Score=239.11  Aligned_cols=227  Identities=12%  Similarity=0.013  Sum_probs=168.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .++||+++ ||||+    .++|||+++   +..|++.|+.|+.  |+. +.++..+++.+..+ .. .++++|++|.+++
T Consensus         2 ~l~~k~~l-ItGas----~~~GIG~ai---A~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~-~~-~~~~~Dv~d~~~v   70 (274)
T PRK08415          2 IMKGKKGL-IVGVA----NNKSIAYGI---AKACFEQGAELAFTYLNE-ALKKRVEPIAQELG-SD-YVYELDVSKPEHF   70 (274)
T ss_pred             ccCCcEEE-EECCC----CCCCHHHHH---HHHHHHCCCEEEEEecCH-HHHHHHHHHHHhcC-Cc-eEEEecCCCHHHH
Confidence            35789999 99984    005999999   6667778877764  664 23344455544432 23 6789999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +++++++.++++++|+||||||+..      +..+.+.++|++.+++|+.++++++++++|.|.+  .  ++||++||.+
T Consensus        71 ~~~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~--~--g~Iv~isS~~  146 (274)
T PRK08415         71 KSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND--G--ASVLTLSYLG  146 (274)
T ss_pred             HHHHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc--C--CcEEEEecCC
Confidence            9999999999999999999999852      3457788999999999999999999999999964  3  8999999987


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      +..+.            +       ....|++||+++.+|+++++.|+.++||+||+|+||+|+ ++.+..........+
T Consensus       147 ~~~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~  207 (274)
T PRK08415        147 GVKYV------------P-------HYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKW  207 (274)
T ss_pred             CccCC------------C-------cchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhh
Confidence            65443            2       567899999999999999999999999999999999999 765432111000001


Q ss_pred             hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...- -......+|++.|.      ++.....+|+.+
T Consensus       208 ~~~~-~pl~r~~~pedva~~v~fL~s~~~~~itG~~i  243 (274)
T PRK08415        208 NEIN-APLKKNVSIEEVGNSGMYLLSDLSSGVTGEIH  243 (274)
T ss_pred             hhhh-CchhccCCHHHHHHHHHHHhhhhhhcccccEE
Confidence            0000 01122467888887      344455677644

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1e-32  Score=237.37  Aligned_cols=224  Identities=12%  Similarity=0.079  Sum_probs=171.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          21 STYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..++||+++ ||||+      +  |||+++   +..|+++|+.|+.  |+ ++.++..+++.+.. + ...++++|++|+
T Consensus         4 ~~~~~k~~l-ITGas------~~~GIG~a~---a~~la~~G~~v~~~~r~-~~~~~~~~~l~~~~-g-~~~~~~~Dv~~~   70 (260)
T PRK06603          4 GLLQGKKGL-ITGIA------NNMSISWAI---AQLAKKHGAELWFTYQS-EVLEKRVKPLAEEI-G-CNFVSELDVTNP   70 (260)
T ss_pred             cccCCcEEE-EECCC------CCcchHHHH---HHHHHHcCCEEEEEeCc-hHHHHHHHHHHHhc-C-CceEEEccCCCH
Confidence            456789999 99998      7  999999   6667778877764  55 34455566665543 2 234679999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      ++++++++++.++++++|+||||||+..      +..+.+.++|++.+++|+.+++.+++.++|.|.+  .  |+||++|
T Consensus        71 ~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~--~--G~Iv~is  146 (260)
T PRK06603         71 KSISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD--G--GSIVTLT  146 (260)
T ss_pred             HHHHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc--C--ceEEEEe
Confidence            9999999999999999999999999753      3457788999999999999999999999999963  3  8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       ....|++||+++..|+++++.|+.++||+||+|+||+|+ ++.+....  ..
T Consensus       147 S~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~--~~  205 (260)
T PRK06603        147 YYGAEKVI------------P-------NYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGD--FS  205 (260)
T ss_pred             cCccccCC------------C-------cccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCC--cH
Confidence            98765443            2       567899999999999999999999999999999999999 87543211  00


Q ss_pred             cchhhhhhcccc--ccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFSWISRVRP--VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ..........|  .+.+|++.|.      ++.....+|+.+
T Consensus       206 -~~~~~~~~~~p~~r~~~pedva~~~~~L~s~~~~~itG~~i  246 (260)
T PRK06603        206 -TMLKSHAATAPLKRNTTQEDVGGAAVYLFSELSKGVTGEIH  246 (260)
T ss_pred             -HHHHHHHhcCCcCCCCCHHHHHHHHHHHhCcccccCcceEE
Confidence             11111101112  2457888887      455566777744

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=100.00  E-value=1.1e-32  Score=236.92  Aligned_cols=230  Identities=12%  Similarity=0.026  Sum_probs=175.5

Q ss_pred             CCCCceEEEEcCC--CCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH--HHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          22 TYNGCLAILCTGD--MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW--DKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        22 ~l~g~~~vlItGa--~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      +++||+++ ||||  +      +|||+++   +.++++.|+.|+.  |+.  .+.++..+++.+.  ..++.++++|++|
T Consensus         3 ~l~~k~~l-ItGas~~------~GIG~ai---a~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d   70 (258)
T PRK07370          3 DLTGKKAL-VTGIANN------RSIAWGI---AQQLHAAGAELGITYLPDEKGRFEKKVRELTEP--LNPSLFLPCDVQD   70 (258)
T ss_pred             ccCCcEEE-EeCCCCC------CchHHHH---HHHHHHCCCEEEEEecCcccchHHHHHHHHHhc--cCcceEeecCcCC
Confidence            46899999 9996  5      6999999   6667788887753  332  2455666666554  2357789999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV  169 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v  169 (292)
                      +++++++++++.++++++|+||||||+..      +..+.+.++|++.+++|+.++++++++++|.|.+  .  ++||++
T Consensus        71 ~~~v~~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~--~--g~Iv~i  146 (258)
T PRK07370         71 DAQIEETFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE--G--GSIVTL  146 (258)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh--C--CeEEEE
Confidence            99999999999999999999999999752      4567788999999999999999999999999974  3  899999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT  248 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~  248 (292)
                      ||..+..+.            +       ....|++||+++.+|+++++.|+.++||+||+|+||+|+ ++.+....  .
T Consensus       147 sS~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~--~  205 (258)
T PRK07370        147 TYLGGVRAI------------P-------NYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGG--I  205 (258)
T ss_pred             eccccccCC------------c-------ccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcccc--c
Confidence            998766543            2       567899999999999999999999999999999999999 87643311  0


Q ss_pred             ccchhhhhhcccc--ccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         249 PVRTFSWISRVRP--VTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       249 ~~~~~~~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      + .....+....+  ...+|++.+.      ++.....+|+.+ .|.-|+
T Consensus       206 ~-~~~~~~~~~~p~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdgg~~  254 (258)
T PRK07370        206 L-DMIHHVEEKAPLRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAGYC  254 (258)
T ss_pred             h-hhhhhhhhcCCcCcCCCHHHHHHHHHHHhChhhccccCcEEEECCccc
Confidence            1 11111111112  2457888876      555667778743 344443

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-32  Score=236.46  Aligned_cols=236  Identities=13%  Similarity=0.107  Sum_probs=183.2

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+.   ++.+++++..+++.... +.++.++++|++|+
T Consensus         3 ~~~l~~k~vl-ItGas------~gIG~~i---a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~   71 (260)
T PRK08416          3 SNEMKGKTLV-ISGGT------RGIGKAI---VYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-GIKAKAYPLNILEP   71 (260)
T ss_pred             ccccCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCH
Confidence            3568899999 99999      9999999   6667778887763   46777777777776543 45889999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVV  168 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~  168 (292)
                      ++++++++++.++++++|+||||||+..        +..+.+.++++..+++|+.+++.+++.++|.|.+.+.  ++||+
T Consensus        72 ~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~iv~  149 (260)
T PRK08416         72 ETYKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGG--GSIIS  149 (260)
T ss_pred             HHHHHHHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCC--EEEEE
Confidence            9999999999999999999999998642        3345677899999999999999999999999987766  89999


Q ss_pred             EcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC
Q psy4251         169 VSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG  247 (292)
Q Consensus       169 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~  247 (292)
                      +||..+..+.            +       ....|++||++++.++++++.++.++||+||+|+||+++ ++.+..... 
T Consensus       150 isS~~~~~~~------------~-------~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~-  209 (260)
T PRK08416        150 LSSTGNLVYI------------E-------NYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNY-  209 (260)
T ss_pred             EeccccccCC------------C-------CcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCC-
Confidence            9998765443            2       567899999999999999999999999999999999999 876543221 


Q ss_pred             Cccchhhhhhcccc--ccCCHHHhhc------ccccCCCCCccc-cCCcccc
Q psy4251         248 TPVRTFSWISRVRP--VTNFQVDLTG------TAEKVGLSGLPD-SEWMWHY  290 (292)
Q Consensus       248 ~~~~~~~~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~~  290 (292)
                        ...........+  .+.+|++.|.      ++.....+|+.+ .+.-|++
T Consensus       210 --~~~~~~~~~~~~~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdgg~~~  259 (260)
T PRK08416        210 --EEVKAKTEELSPLNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGGTTF  259 (260)
T ss_pred             --HHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcCCeec
Confidence              011111111112  2568888887      344455677754 3444443

>PRK07478 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3e-32  Score=233.49  Aligned_cols=226  Identities=15%  Similarity=0.165  Sum_probs=180.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++|+++ ||||+      +|||+++   +..|++.|+.|+  +|+.+++++..+++++.  +.++.++++|+++.+++
T Consensus         3 ~~~~k~~l-ItGas------~giG~~i---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~   70 (254)
T PRK07478          3 RLNGKVAI-ITGAS------SGIGRAA---AKLFAREGAKVVVGARRQAELDQLVAEIRAE--GGEAVALAGDVRDEAYA   70 (254)
T ss_pred             CCCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHH
Confidence            56789999 99999      9999999   555667777766  48888888888888765  45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++.++++++|+||||||+..   +..+.+.++|+.++++|+.+++.++++++|.|.++..  ++||++||..+..
T Consensus        71 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~--~~iv~~sS~~~~~  148 (254)
T PRK07478         71 KALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGG--GSLIFTSTFVGHT  148 (254)
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--ceEEEEechHhhc
Confidence            9999999999999999999999853   4456788899999999999999999999999988777  8999999987652


Q ss_pred             -ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         177 -SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       177 -~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                       +.            +       +...|++||+++..+++++++++.++||+||+|+||+++ ++.+.....  + ....
T Consensus       149 ~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~-~~~~  206 (254)
T PRK07478        149 AGF------------P-------GMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDT--P-EALA  206 (254)
T ss_pred             cCC------------C-------CcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCC--H-HHHH
Confidence             22            2       567899999999999999999999999999999999999 877654211  1 1111


Q ss_pred             hhhcc--ccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRV--RPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~--~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ++...  .....+|++.|+      ++.....+|+.+
T Consensus       207 ~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~  243 (254)
T PRK07478        207 FVAGLHALKRMAQPEEIAQAALFLASDAASFVTGTAL  243 (254)
T ss_pred             HHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCeE
Confidence            11111  123568888887      334455677643

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1.3e-32  Score=236.75  Aligned_cols=224  Identities=12%  Similarity=0.026  Sum_probs=171.2

Q ss_pred             CCCCceEEEEcCC--CCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          22 TYNGCLAILCTGD--MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        22 ~l~g~~~vlItGa--~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++||+++ ||||  +      +|||+++   +.+|+++|+.|+.  |+ ++.++..+++.+..  .....++||++|.+
T Consensus         3 ~~~~k~~l-ITGa~~~------~GIG~a~---a~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~   69 (261)
T PRK08690          3 FLQGKKIL-ITGMISE------RSIAYGI---AKACREQGAELAFTYVV-DKLEERVRKMAAEL--DSELVFRCDVASDD   69 (261)
T ss_pred             ccCCcEEE-EECCCCC------CcHHHHH---HHHHHHCCCEEEEEcCc-HHHHHHHHHHHhcc--CCceEEECCCCCHH
Confidence            36899999 9996  6      7999999   6667788888774  43 44455556665443  23567899999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCC-------CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~-------~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      +++++++++.+++++||+||||||+...       ..+.+.+.|+..+++|+.++++++++++|.|.++ .  ++||++|
T Consensus        70 ~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~-~--g~Iv~is  146 (261)
T PRK08690         70 EINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR-N--SAIVALS  146 (261)
T ss_pred             HHHHHHHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc-C--cEEEEEc
Confidence            9999999999999999999999998642       1345677899999999999999999999998654 4  8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |.++..+.            +       +...|++||+++..|+++++.++.++||+||+|+||+|+ ++.+.....   
T Consensus       147 s~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~---  204 (261)
T PRK08690        147 YLGAVRAI------------P-------NYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADF---  204 (261)
T ss_pred             ccccccCC------------C-------CcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCch---
Confidence            98776543            2       567899999999999999999999999999999999999 876543210   


Q ss_pred             cchhhhhhcccc--ccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFSWISRVRP--VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ......+....|  .+.+|+|.|.      ++.....+|+.+
T Consensus       205 ~~~~~~~~~~~p~~r~~~peevA~~v~~l~s~~~~~~tG~~i  246 (261)
T PRK08690        205 GKLLGHVAAHNPLRRNVTIEEVGNTAAFLLSDLSSGITGEIT  246 (261)
T ss_pred             HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCcccCCcceeEE
Confidence            011111101112  2468888887      444556677755

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=1.4e-32  Score=235.97  Aligned_cols=224  Identities=9%  Similarity=-0.001  Sum_probs=170.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC---HHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC---WDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      +++||+++ ||||+    .++|||+++   +.+|+++|+.|+.  |+   .++++++.+++    .+.++.++++|++|.
T Consensus         4 ~~~~k~~l-ItGa~----~s~GIG~ai---a~~la~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~d~   71 (257)
T PRK08594          4 SLEGKTYV-VMGVA----NKRSIAWGI---ARSLHNAGAKLVFTYAGERLEKEVRELADTL----EGQESLLLPCDVTSD   71 (257)
T ss_pred             ccCCCEEE-EECCC----CCCCHHHHH---HHHHHHCCCEEEEecCcccchHHHHHHHHHc----CCCceEEEecCCCCH
Confidence            46799999 99984    005999999   6667788888764  43   23344433333    245788999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      ++++++++++.++++++|++|||||+..      +..+.+.++|+..+++|+.+++.++++++|.|.+  .  |+||++|
T Consensus        72 ~~v~~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~--g~Iv~is  147 (257)
T PRK08594         72 EEITACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE--G--GSIVTLT  147 (257)
T ss_pred             HHHHHHHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc--C--ceEEEEc
Confidence            9999999999999999999999999753      3456788899999999999999999999999964  4  8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       ....|++||+++..|+++++.|+.++||+||+|+||+++ ++.+.....  .
T Consensus       148 S~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~--~  206 (257)
T PRK08594        148 YLGGERVV------------Q-------NYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGF--N  206 (257)
T ss_pred             ccCCccCC------------C-------CCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccc--c
Confidence            98776543            2       567899999999999999999999999999999999999 875432110  0


Q ss_pred             cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ........  ....+.+|++.|.      ++.....+|+.+
T Consensus       207 -~~~~~~~~~~p~~r~~~p~~va~~~~~l~s~~~~~~tG~~~  247 (257)
T PRK08594        207 -SILKEIEERAPLRRTTTQEEVGDTAAFLFSDLSRGVTGENI  247 (257)
T ss_pred             -HHHHHHhhcCCccccCCHHHHHHHHHHHcCcccccccceEE
Confidence             10111100  1122468888887      455566777744

>PRK05867 short chain dehydrogenase; Provisional

Probab=100.00  E-value=4.1e-32  Score=232.56  Aligned_cols=234  Identities=15%  Similarity=0.158  Sum_probs=183.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||.++   +..|++.|+.|+  .|+.+++++..+++...  +.++..+++|++|+++
T Consensus         5 ~~~~~k~vl-VtGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~   72 (253)
T PRK05867          5 FDLHGKRAL-ITGAS------TGIGKRV---ALAYVEAGAQVAIAARHLDALEKLADEIGTS--GGKVVPVCCDVSQHQQ   72 (253)
T ss_pred             ccCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHH
Confidence            357899999 99999      9999999   666777887776  48888888888888765  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||...  +..+.+.++|++.+++|+.+++.++++++|.|.++. .  ++||++||..+.
T Consensus        73 ~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~--g~iv~~sS~~~~  150 (253)
T PRK05867         73 VTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQG--GVIINTASMSGH  150 (253)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCC--cEEEEECcHHhc
Confidence            99999999999999999999999863  455678889999999999999999999999997653 4  799999998765


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      ....+          .       ....|++||++++.+++++++++.++||+||+|+||+|+ ++.+.....  ...+..
T Consensus       151 ~~~~~----------~-------~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~~~~--~~~~~~  211 (253)
T PRK05867        151 IINVP----------Q-------QVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYTEY--QPLWEP  211 (253)
T ss_pred             CCCCC----------C-------CccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccchHH--HHHHHh
Confidence            32210          1       346899999999999999999999999999999999999 886543210  011111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      ..  ....+.+|++.|.      ++.....+|+.+ .|.-|+
T Consensus       212 ~~--~~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG~~  251 (253)
T PRK05867        212 KI--PLGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGGYT  251 (253)
T ss_pred             cC--CCCCCcCHHHHHHHHHHHcCcccCCcCCCeEEECCCcc
Confidence            11  1123568898887      555667778754 344443

>KOG4169|consensus

Probab=100.00  E-value=2e-33  Score=225.45  Aligned_cols=213  Identities=17%  Similarity=0.129  Sum_probs=174.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +++||+++ +||+.      +|||+++   ..+|...|+.+.+ -+..+.-+...+|++.+|..++.|++||+++..+++
T Consensus         2 ~~tGKna~-vtgga------gGIGl~~---sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~   71 (261)
T KOG4169|consen    2 DLTGKNAL-VTGGA------GGIGLAT---SKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLE   71 (261)
T ss_pred             cccCceEE-EecCC------chhhHHH---HHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHH
Confidence            67899999 99999      9999999   6667788766554 233333677788999999999999999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC-CCcEEEEEcCcccccccC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK-LFARVVVVSSESHRYSYI  179 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~-~~~~iV~vsS~~~~~~~~  179 (292)
                      +.++++.+++|.||++||+||+.      ++++|++++.+|+.|.+.-+...+|+|.+.+. +.|-||++||..+..+. 
T Consensus        72 ~~f~ki~~~fg~iDIlINgAGi~------~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~-  144 (261)
T KOG4169|consen   72 AAFDKILATFGTIDILINGAGIL------DDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPM-  144 (261)
T ss_pred             HHHHHHHHHhCceEEEEcccccc------cchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCcc-
Confidence            99999999999999999999997      57789999999999999999999999987652 23899999999988876 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-ccccccccc----CCccch
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKKWWRF----GTPVRT  252 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~~~~~----~~~~~~  252 (292)
                                 +       ..+.|++||+++..|+|++|....  +.||++++||||+++ ++.+..-..    ..-..+
T Consensus       145 -----------p-------~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~  206 (261)
T KOG4169|consen  145 -----------P-------VFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSI  206 (261)
T ss_pred             -----------c-------cchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHH
Confidence                       3       678999999999999999987763  559999999999999 887765211    122233


Q ss_pred             hhhhhccccccCCHHHhhc
Q psy4251         253 FSWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~  271 (292)
                      ...+  ...-.+++..+++
T Consensus       207 ~~~l--~~~~~q~~~~~a~  223 (261)
T KOG4169|consen  207 KEAL--ERAPKQSPACCAI  223 (261)
T ss_pred             HHHH--HHcccCCHHHHHH
Confidence            3333  2222567777776

>PRK08589 short chain dehydrogenase; Validated

Probab=100.00  E-value=4.9e-32  Score=234.62  Aligned_cols=187  Identities=20%  Similarity=0.249  Sum_probs=162.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +..|++.|+.|++  |+ +++++..+++.+.  +.++.++++|+++.+++
T Consensus         3 ~l~~k~vl-ItGas------~gIG~ai---a~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~   69 (272)
T PRK08589          3 RLENKVAV-ITGAS------TGIGQAS---AIALAQEGAYVLAVDIA-EAVSETVDKIKSN--GGKAKAYHVDISDEQQV   69 (272)
T ss_pred             CCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc--CCeEEEEEeecCCHHHH
Confidence            46799999 99999      9999999   6667777877764  77 7788888888654  45789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      .++++++.++++++|+||||||+..   +..+.+.+.|++.+++|+.+++.++++++|+|.++.   ++||++||..+..
T Consensus        70 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  146 (272)
T PRK08589         70 KDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG---GSIINTSSFSGQA  146 (272)
T ss_pred             HHHHHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEeCchhhcC
Confidence            9999999999999999999999863   345667889999999999999999999999997653   8999999987766


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      +.            +       ....|++||+++.+|++++++++.++||+||+|+||+|+ ++.+..
T Consensus       147 ~~------------~-------~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~  195 (272)
T PRK08589        147 AD------------L-------YRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKL  195 (272)
T ss_pred             CC------------C-------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhh
Confidence            54            2       567899999999999999999999999999999999999 887653

>PRK07791 short chain dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-32  Score=237.09  Aligned_cols=188  Identities=16%  Similarity=0.202  Sum_probs=160.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH---------HHHHHHHHHHHhhCCCCceEEEE
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW---------DKANDAISKILTEKPSAQCIAME   90 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~---------~~~~~~~~~l~~~~~~~~~~~~~   90 (292)
                      .++||+++ ||||+      +|||+++   +.++++.|+.|+.  ++.         +++++..+++...  +.++.+++
T Consensus         3 ~l~~k~~l-ITGas------~GIG~ai---a~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~   70 (286)
T PRK07791          3 LLDGRVVI-VTGAG------GGIGRAH---ALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA--GGEAVANG   70 (286)
T ss_pred             ccCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc--CCceEEEe
Confidence            36789999 99999      9999999   5666677877764  444         6777778888654  55788999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC----CCc
Q psy4251          91 LDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK----LFA  164 (292)
Q Consensus        91 ~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~----~~~  164 (292)
                      +|++|.+++.++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|.+...    ..+
T Consensus        71 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g  150 (286)
T PRK07791         71 DDIADWDGAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDA  150 (286)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCc
Confidence            9999999999999999999999999999999863  4567788999999999999999999999999975421    127


Q ss_pred             EEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         165 RVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       165 ~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      +||++||.++..+.            +       +...|++||+++.+|+++++.|+.++||+||+|+|| +. ++..
T Consensus       151 ~Iv~isS~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~  208 (286)
T PRK07791        151 RIINTSSGAGLQGS------------V-------GQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTE  208 (286)
T ss_pred             EEEEeCchhhCcCC------------C-------CchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcch
Confidence            99999998877654            2       678999999999999999999999999999999999 77 7654

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=2.2e-32  Score=234.76  Aligned_cols=220  Identities=11%  Similarity=-0.035  Sum_probs=166.4

Q ss_pred             CCCCceEEEEcCC--CCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH--HHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          22 TYNGCLAILCTGD--MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW--DKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        22 ~l~g~~~vlItGa--~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      +++||+++ ||||  +      +|||+++   +.+|++.|+.|+.  |+.  +..++..+++     +.++.++++|++|
T Consensus         4 ~~~~k~~l-ItGa~~s------~GIG~a~---a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~   68 (256)
T PRK07889          4 LLEGKRIL-VTGVITD------SSIAFHV---ARVAQEQGAEVVLTGFGRALRLTERIAKRL-----PEPAPVLELDVTN   68 (256)
T ss_pred             cccCCEEE-EeCCCCc------chHHHHH---HHHHHHCCCEEEEecCccchhHHHHHHHhc-----CCCCcEEeCCCCC
Confidence            47789999 9999  8      9999999   6667788888775  442  3334433333     2367789999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV  169 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v  169 (292)
                      +++++++++++.++++++|+||||||+..      +..+.+.++|++++++|+.+++++++.++|+|.+  .  ++||++
T Consensus        69 ~~~i~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~--~--g~Iv~i  144 (256)
T PRK07889         69 EEHLASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE--G--GSIVGL  144 (256)
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc--C--ceEEEE
Confidence            99999999999999999999999999863      2345677889999999999999999999999973  3  899999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT  248 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~  248 (292)
                      ++... .+.            +       .+..|++||+++.+|+++++.|+.++||+||+|+||+++ ++.+.....  
T Consensus       145 s~~~~-~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~--  202 (256)
T PRK07889        145 DFDAT-VAW------------P-------AYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGF--  202 (256)
T ss_pred             eeccc-ccC------------C-------ccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCc--
Confidence            86532 211            2       566799999999999999999999999999999999999 886543211  


Q ss_pred             ccchhhhh-hccc-c-ccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 PVRTFSWI-SRVR-P-VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~~~~~~~~-~~~~-~-~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ......+ ...+ . ...+|++.|.      ++.....+|+.+
T Consensus       203 -~~~~~~~~~~~p~~~~~~~p~evA~~v~~l~s~~~~~~tG~~i  245 (256)
T PRK07889        203 -ELLEEGWDERAPLGWDVKDPTPVARAVVALLSDWFPATTGEIV  245 (256)
T ss_pred             -HHHHHHHHhcCccccccCCHHHHHHHHHHHhCcccccccceEE
Confidence             0111111 1111 1 2468898887      444556677755

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=3.3e-32  Score=234.18  Aligned_cols=222  Identities=11%  Similarity=0.039  Sum_probs=169.2

Q ss_pred             CCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++||+++ ||||+      +  |||+++   +.+|+++|+.|+.  |+ ++.++..+++....  ..+.+++||++|.++
T Consensus         4 l~~k~~l-ITGas------~~~GIG~ai---a~~la~~G~~vil~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~   70 (262)
T PRK07984          4 LSGKRIL-VTGVA------SKLSIAYGI---AQAMHREGAELAFTYQN-DKLKGRVEEFAAQL--GSDIVLPCDVAEDAS   70 (262)
T ss_pred             cCCCEEE-EeCCC------CCccHHHHH---HHHHHHCCCEEEEEecc-hhHHHHHHHHHhcc--CCceEeecCCCCHHH
Confidence            6789999 99998      7  999999   6667788888764  55 45556666776553  356788999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCC-------CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~-------~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      ++++++++.++++++|++|||||+...       ..+.+.++|+..+++|+.+++.+++.+.|.+.  +.  ++||++||
T Consensus        71 v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~--g~Iv~iss  146 (262)
T PRK07984         71 IDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN--PG--SALLTLSY  146 (262)
T ss_pred             HHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhc--CC--cEEEEEec
Confidence            999999999999999999999998532       23467789999999999999999999998764  34  89999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV  250 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~  250 (292)
                      ..+..+.            +       ....|++||+++.+|+++++.|+.++||+||+|+||+|+ ++.+.....   .
T Consensus       147 ~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~---~  204 (262)
T PRK07984        147 LGAERAI------------P-------NYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDF---R  204 (262)
T ss_pred             CCCCCCC------------C-------CcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCch---H
Confidence            8765443            2       567899999999999999999999999999999999999 765432110   0


Q ss_pred             chhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ........  ......+|++.+.      ++.....+|+.+
T Consensus       205 ~~~~~~~~~~p~~r~~~pedva~~~~~L~s~~~~~itG~~i  245 (262)
T PRK07984        205 KMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVV  245 (262)
T ss_pred             HHHHHHHHcCCCcCCCCHHHHHHHHHHHcCcccccccCcEE
Confidence            11111100  1123467888876      344455677654

>PRK07062 short chain dehydrogenase; Provisional

Probab=100.00  E-value=6.6e-32  Score=232.78  Aligned_cols=191  Identities=18%  Similarity=0.138  Sum_probs=168.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.++++.|+.|+  .|+.+++++..+++.+..++.++.++++|++|.++
T Consensus         4 ~~l~~k~~l-ItGas------~giG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   73 (265)
T PRK07062          4 IQLEGRVAV-VTGGS------SGIGLAT---VELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEAD   73 (265)
T ss_pred             cccCCCEEE-EeCCC------chHHHHH---HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHH
Confidence            467899999 99999      9999999   555667777765  48888898888888877666689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||...  +..+.+.++|++.+++|+.+++.+++.++|.|++++.  ++||++||..+..
T Consensus        74 v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~  151 (265)
T PRK07062         74 VAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAA--ASIVCVNSLLALQ  151 (265)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC--cEEEEeccccccC
Confidence            99999999999999999999999853  4566788899999999999999999999999988766  9999999988765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       ....|+++|+++.+++++++.|+.++||+||+|+||+|+ ++...
T Consensus       152 ~~------------~-------~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~  199 (265)
T PRK07062        152 PE------------P-------HMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRR  199 (265)
T ss_pred             CC------------C-------CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhh
Confidence            54            2       567899999999999999999999999999999999999 87643

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=6e-32  Score=232.49  Aligned_cols=224  Identities=12%  Similarity=-0.027  Sum_probs=166.7

Q ss_pred             CCCCceEEEEcCC--CCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          22 TYNGCLAILCTGD--MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        22 ~l~g~~~vlItGa--~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++||+++ ||||  +      +|||+++   +.++++.|+.|+.  |. ++.++..+++.+..+  ....+++|++|++
T Consensus         3 ~l~~k~vl-ItGas~~------~GIG~a~---a~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~   69 (260)
T PRK06997          3 FLAGKRIL-ITGLLSN------RSIAYGI---AKACKREGAELAFTYVG-DRFKDRITEFAAEFG--SDLVFPCDVASDE   69 (260)
T ss_pred             ccCCcEEE-EeCCCCC------CcHHHHH---HHHHHHCCCeEEEEccc-hHHHHHHHHHHHhcC--CcceeeccCCCHH
Confidence            36789999 9996  6      8999999   6667788888764  22 223333444444332  2346899999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCC-------CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~-------~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      +++++++++.++++++|++|||||+...       ..+.+.++|+..+++|+.++++++++++|+|.  +.  ++||++|
T Consensus        70 ~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~--~~--g~Ii~is  145 (260)
T PRK06997         70 QIDALFASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLS--DD--ASLLTLS  145 (260)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcC--CC--ceEEEEe
Confidence            9999999999999999999999998632       13467789999999999999999999999994  34  8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC-
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT-  248 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~-  248 (292)
                      |..+..+.            +       ....|++||+++..|+++++.|+.++||+||+|+||+|+ ++.+....... 
T Consensus       146 s~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~  206 (260)
T PRK06997        146 YLGAERVV------------P-------NYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKI  206 (260)
T ss_pred             ccccccCC------------C-------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhH
Confidence            98765443            2       566899999999999999999999999999999999999 77543211000 


Q ss_pred             ccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 PVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ........  ......+|++.+.      ++.....+|+.+
T Consensus       207 ~~~~~~~~--p~~r~~~pedva~~~~~l~s~~~~~itG~~i  245 (260)
T PRK06997        207 LDFVESNA--PLRRNVTIEEVGNVAAFLLSDLASGVTGEIT  245 (260)
T ss_pred             HHHHHhcC--cccccCCHHHHHHHHHHHhCccccCcceeEE
Confidence            00111111  1123468888887      444556677654

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=100.00  E-value=8.3e-32  Score=230.73  Aligned_cols=229  Identities=16%  Similarity=0.218  Sum_probs=179.1

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ..+++||+++ |||++      +|||+++   +.+|++.|+.|+..+....++..+++.+.  +.++.++++|++|.+++
T Consensus         5 ~~~l~~k~~l-ItG~~------~gIG~a~---a~~l~~~G~~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~   72 (253)
T PRK08993          5 AFSLEGKVAV-VTGCD------TGLGQGM---ALGLAEAGCDIVGINIVEPTETIEQVTAL--GRRFLSLTADLRKIDGI   72 (253)
T ss_pred             ccCCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEecCcchHHHHHHHHhc--CCeEEEEECCCCCHHHH
Confidence            3568899999 99999      9999999   66677888888764433345555666544  45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~  176 (292)
                      +++++++.++++++|++|||||...  +..+.+.++|++.+++|+.+++.++++++|.|.+++ .  ++||++||..+..
T Consensus        73 ~~~~~~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~--g~iv~isS~~~~~  150 (253)
T PRK08993         73 PALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNG--GKIINIASMLSFQ  150 (253)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCC--eEEEEECchhhcc
Confidence            9999999999999999999999863  456678889999999999999999999999997653 5  8999999987766


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC-ccchhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT-PVRTFS  254 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~-~~~~~~  254 (292)
                      +.            +       ....|+.+|++++.++++++.++.++||+||+|+||+++ ++......... ...+..
T Consensus       151 ~~------------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~  211 (253)
T PRK08993        151 GG------------I-------RVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILD  211 (253)
T ss_pred             CC------------C-------CCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHh
Confidence            54            2       456899999999999999999999999999999999999 87654321100 011111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+  ....+.+|++.|.      ++.....+|+.+
T Consensus       212 ~~--p~~r~~~p~eva~~~~~l~s~~~~~~~G~~~  244 (253)
T PRK08993        212 RI--PAGRWGLPSDLMGPVVFLASSASDYINGYTI  244 (253)
T ss_pred             cC--CCCCCcCHHHHHHHHHHHhCccccCccCcEE
Confidence            11  1123568888887      455566777754

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=100.00  E-value=7.7e-32  Score=233.25  Aligned_cols=226  Identities=12%  Similarity=0.044  Sum_probs=169.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..++||+++ ||||+    .++|||+++   +..|+++|+.|+.  |+ ++..+..+++.+..  .....+++|++|+++
T Consensus         6 ~~~~~k~~l-ItGas----~~~GIG~ai---a~~la~~G~~V~l~~r~-~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~   74 (272)
T PRK08159          6 GLMAGKRGL-ILGVA----NNRSIAWGI---AKACRAAGAELAFTYQG-DALKKRVEPLAAEL--GAFVAGHCDVTDEAS   74 (272)
T ss_pred             ccccCCEEE-EECCC----CCCcHHHHH---HHHHHHCCCEEEEEcCc-hHHHHHHHHHHHhc--CCceEEecCCCCHHH
Confidence            346789998 99983    006999999   6667788888764  54 23334444454443  235678999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ++++++++.++++++|+||||||+..      +..+.+.++|++.+++|+.+++.++++++|.|.+  .  |+||++||.
T Consensus        75 v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~--g~Iv~iss~  150 (272)
T PRK08159         75 IDAVFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD--G--GSILTLTYY  150 (272)
T ss_pred             HHHHHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC--C--ceEEEEecc
Confidence            99999999999999999999999863      3456788899999999999999999999999963  3  899999997


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      ++..+.            +       ....|++||+++..|+++++.|+.++||+||+|+||+++ ++.+.....   ..
T Consensus       151 ~~~~~~------------p-------~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~---~~  208 (272)
T PRK08159        151 GAEKVM------------P-------HYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDF---RY  208 (272)
T ss_pred             ccccCC------------C-------cchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcc---hH
Confidence            665433            2       567899999999999999999999999999999999999 765432111   01


Q ss_pred             hhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...+...  ......+|+|.|.      ++.....+|+.+
T Consensus       209 ~~~~~~~~~p~~r~~~peevA~~~~~L~s~~~~~itG~~i  248 (272)
T PRK08159        209 ILKWNEYNAPLRRTVTIEEVGDSALYLLSDLSRGVTGEVH  248 (272)
T ss_pred             HHHHHHhCCcccccCCHHHHHHHHHHHhCccccCccceEE
Confidence            1111100  1112468898887      445566777754

>PRK06139 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-31  Score=235.95  Aligned_cols=189  Identities=13%  Similarity=0.061  Sum_probs=166.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++|+++ ||||+      +|||+++   +..+++.|+.|+  .|+.++++++.+++++.  +.++.++++|++|.++
T Consensus         3 ~~l~~k~vl-ITGAs------~GIG~ai---a~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~--g~~~~~~~~Dv~d~~~   70 (330)
T PRK06139          3 GPLHGAVVV-ITGAS------SGIGQAT---AEAFARRGARLVLAARDEEALQAVAEECRAL--GAEVLVVPTDVTDADQ   70 (330)
T ss_pred             cCCCCCEEE-EcCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHH
Confidence            357789999 99999      9999999   555667777765  49999999998888765  5688899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+.+++||++|||||+..  +..+.+.+++++.+++|+++++.+++.++|+|.++..  ++||+++|..+..
T Consensus        71 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~--g~iV~isS~~~~~  148 (330)
T PRK06139         71 VKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGH--GIFINMISLGGFA  148 (330)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCC--CEEEEEcChhhcC
Confidence            99999999998899999999999863  4667788999999999999999999999999988776  9999999988776


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCC-CeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKY-KIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~-gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       ....|++||+++.+|+++++.|+... ||+|++|+||+++ ++.++
T Consensus       149 ~~------------p-------~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~  197 (330)
T PRK06139        149 AQ------------P-------YAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRH  197 (330)
T ss_pred             CC------------C-------CchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccc
Confidence            54            2       56789999999999999999999875 8999999999999 87654

>PRK06114 short chain dehydrogenase; Provisional

Probab=100.00  E-value=2e-31  Score=228.49  Aligned_cols=230  Identities=14%  Similarity=0.125  Sum_probs=178.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH-HHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW-DKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ |||++      +|||+++   +.+|.+.|+.|++  |+. +.+++..+++...  +.++.++++|++|++
T Consensus         4 ~~~~~k~~l-VtG~s------~gIG~~i---a~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~   71 (254)
T PRK06114          4 FDLDGQVAF-VTGAG------SGIGQRI---AIGLAQAGADVALFDLRTDDGLAETAEHIEAA--GRRAIQIAADVTSKA   71 (254)
T ss_pred             cCCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCceEEEEcCCCCHH
Confidence            457899999 99999      9999999   5556677877764  553 4567777777655  457889999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.+++++||+||||||+..  +..+.+.++|++++++|+.++++++++++|.|.++..  ++||++||.++.
T Consensus        72 ~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~isS~~~~  149 (254)
T PRK06114         72 DLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGG--GSIVNIASMSGI  149 (254)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC--cEEEEECchhhc
Confidence            999999999999999999999999863  4566788999999999999999999999999987766  899999998876


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+...          .       ....|+++|+++..++++++.++.++||+||+|+||+++ ++.+..........+..
T Consensus       150 ~~~~~----------~-------~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~  212 (254)
T PRK06114        150 IVNRG----------L-------LQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEE  212 (254)
T ss_pred             CCCCC----------C-------CcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccchHHHHHHHh
Confidence            54310          0       256899999999999999999999999999999999999 87653111000001111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ...-..+|++.+.      ++.....+|+.+
T Consensus       213 ~~--p~~r~~~~~dva~~~~~l~s~~~~~~tG~~i  245 (254)
T PRK06114        213 QT--PMQRMAKVDEMVGPAVFLLSDAASFCTGVDL  245 (254)
T ss_pred             cC--CCCCCcCHHHHHHHHHHHcCccccCcCCceE
Confidence            11  1122457888886      455567777654

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=100.00  E-value=3.6e-31  Score=227.22  Aligned_cols=223  Identities=17%  Similarity=0.111  Sum_probs=174.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--c-----------CHHHHHHHHHHHHhhCCCCce
Q psy4251          22 TYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--N-----------CWDKANDAISKILTEKPSAQC   86 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r-----------~~~~~~~~~~~l~~~~~~~~~   86 (292)
                      +|+||+++ ||||+      +  |||+++   +.+++++|+.|+.  |           +.++.++..+++.+.  +.++
T Consensus         3 ~l~~k~vl-VtGas------~~~giG~~~---a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~   70 (256)
T PRK12859          3 QLKNKVAV-VTGVS------RLDGIGAAI---CKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKN--GVKV   70 (256)
T ss_pred             CcCCcEEE-EECCC------CCCChHHHH---HHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhc--CCeE
Confidence            58899999 99997      6  999999   5556677877664  1           133344555666554  5689


Q ss_pred             EEEEccCCChHHHHHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCc
Q psy4251          87 IAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA  164 (292)
Q Consensus        87 ~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~  164 (292)
                      .++++|+++.+++.++++++.++++++|++|||||..  .+..+.+.++|+.++++|+.+++.++++++|.|.++..  +
T Consensus        71 ~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g  148 (256)
T PRK12859         71 SSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSG--G  148 (256)
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCC--e
Confidence            9999999999999999999999999999999999975  34567889999999999999999999999999987766  9


Q ss_pred             EEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         165 RVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       165 ~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      +||++||..+..+.            +       +...|+++|+++..|+++++.++.++||+||+|+||+++ ++....
T Consensus       149 ~iv~isS~~~~~~~------------~-------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~~  209 (256)
T PRK12859        149 RIINMTSGQFQGPM------------V-------GELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTEE  209 (256)
T ss_pred             EEEEEcccccCCCC------------C-------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCHH
Confidence            99999998766543            2       678999999999999999999999999999999999999 764321


Q ss_pred             cccCCccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         244 WRFGTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...    .+....  ....+.+|++.++      .+.....+|+++
T Consensus       210 ~~~----~~~~~~--~~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i  249 (256)
T PRK12859        210 IKQ----GLLPMF--PFGRIGEPKDAARLIKFLASEEAEWITGQII  249 (256)
T ss_pred             HHH----HHHhcC--CCCCCcCHHHHHHHHHHHhCccccCccCcEE
Confidence            110    111111  1122457888877      344456677754

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.98  E-value=6e-31  Score=232.19  Aligned_cols=247  Identities=23%  Similarity=0.226  Sum_probs=177.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+|+++ ||||+      +|||+++   +.+|++.| +.|+  +|+.++++++.+++...  +.++.++++|+++.++++
T Consensus         2 ~~k~vl-ITGas------~GIG~ai---a~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~   69 (314)
T TIGR01289         2 QKPTVI-ITGAS------SGLGLYA---AKALAATGEWHVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVR   69 (314)
T ss_pred             CCCEEE-EECCC------ChHHHHH---HHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHH
Confidence            478888 99999      9999999   55566777 6665  58888888888777532  457889999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCC---CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGL---GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~---~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      ++++++.+.+++||++|||||+..+   ..+.+.++|+.++++|+.+++++++.++|.|.+++...++||++||.++...
T Consensus        70 ~~~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~  149 (314)
T TIGR01289        70 QFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTN  149 (314)
T ss_pred             HHHHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccc
Confidence            9999999888999999999998643   2356788999999999999999999999999876311189999999977543


Q ss_pred             cCC---CCCCCccccC-----------cCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc-CCCeEEEEecCCcc-c-ccc
Q psy4251         178 YIT---KDTISKSVLS-----------VENYSDFWAMTAYNDTKLCNVLFGEKLATLWY-KYKIALSSRHCCWK-I-TVS  240 (292)
Q Consensus       178 ~~~---~~~~~~~~~~-----------~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~gi~v~~v~PG~v-~-~~~  240 (292)
                      ...   ....+++++.           ......+.+..+|++||+++..+++++++++. +.||+|++|+||+| . ++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~  229 (314)
T TIGR01289       150 TLAGNVPPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLF  229 (314)
T ss_pred             cCCCcCCCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCccc
Confidence            110   0011122111           00123455778999999999999999999985 46899999999999 5 776


Q ss_pred             ccccccCCccchhhhh-hccccccCCHHHhhc------ccccCCCCCcccc
Q psy4251         241 KKWWRFGTPVRTFSWI-SRVRPVTNFQVDLTG------TAEKVGLSGLPDS  284 (292)
Q Consensus       241 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~------~~~~~~~~G~~~~  284 (292)
                      ++....  ...+..++ ........+++++|.      .......+|.||.
T Consensus       230 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~  278 (314)
T TIGR01289       230 REHVPL--FRTLFPPFQKYITKGYVSEEEAGERLAQVVSDPKLKKSGVYWS  278 (314)
T ss_pred             ccccHH--HHHHHHHHHHHHhccccchhhhhhhhHHhhcCcccCCCceeee
Confidence            542110  00011111 001122468888876      2222235788885

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.98  E-value=2.6e-31  Score=234.71  Aligned_cols=186  Identities=17%  Similarity=0.175  Sum_probs=153.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ ||||+      +|||+++   +.+++++|+.|+  .|+.++++++.+++.+..++.++..+.+|+++  ++.+
T Consensus        52 ~g~~~l-ITGAs------~GIG~al---A~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~  119 (320)
T PLN02780         52 YGSWAL-VTGPT------DGIGKGF---AFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG--DIDE  119 (320)
T ss_pred             cCCEEE-EeCCC------cHHHHHH---HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC--CcHH
Confidence            689998 99999      9999999   555667776665  59999999999999877655688899999985  2333


Q ss_pred             HHHHHHHhCC--CccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         102 FAEEYQKKFR--SLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       102 ~~~~~~~~~~--~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      .++++.+..+  ++|++|||||+..    ++.+.+.+++++++++|+.|++.+++.++|.|.+++.  |+||++||.++.
T Consensus       120 ~~~~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~--g~IV~iSS~a~~  197 (320)
T PLN02780        120 GVKRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKK--GAIINIGSGAAI  197 (320)
T ss_pred             HHHHHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC--cEEEEEechhhc
Confidence            3444444333  5779999999863    3456788899999999999999999999999988777  999999998775


Q ss_pred             c-ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         176 Y-SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       176 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      . +..           +       ....|++||+++..|+++++.|+.++||+|++|+||+|+ ++..
T Consensus       198 ~~~~~-----------p-------~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~  247 (320)
T PLN02780        198 VIPSD-----------P-------LYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS  247 (320)
T ss_pred             cCCCC-----------c-------cchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc
Confidence            4 211           2       567999999999999999999999999999999999999 8865

>KOG0725|consensus

Probab=99.98  E-value=4.4e-31  Score=226.51  Aligned_cols=189  Identities=21%  Similarity=0.203  Sum_probs=165.0

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCC-CCceEEEEccCCCh
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKP-SAQCIAMELDLCRL   96 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~   96 (292)
                      ...|.||+++ |||++      +|||+++   +.+|+..|+.|+  .|+.+++++.++++..... +.++..+.||+++.
T Consensus         3 ~~~l~gkval-VTG~s------~GIG~ai---a~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   72 (270)
T KOG0725|consen    3 GGRLAGKVAL-VTGGS------SGIGKAI---ALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKE   72 (270)
T ss_pred             CccCCCcEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCH
Confidence            3568999999 99999      9999999   666777787766  4999999999988876533 45799999999999


Q ss_pred             HHHHHHHHHHHHh-CCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhH-HHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          97 KSVKKFAEEYQKK-FRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLA-HFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        97 ~~v~~~~~~~~~~-~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~-~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      ++++++++...++ +|+||+||||||...   +..+.+.+.|+..+++|+.| .+.+.+.+.|+++++..  +.|+++||
T Consensus        73 ~~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~g--g~I~~~ss  150 (270)
T KOG0725|consen   73 VDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKG--GSIVNISS  150 (270)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCC--ceEEEEec
Confidence            9999999999998 799999999999874   46888999999999999995 67777778888888777  99999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhh-hHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAM-TAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      .++..+..                   +. ..|+++|+++..|++++|.||.++|||||+|.||.+. ++
T Consensus       151 ~~~~~~~~-------------------~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~  201 (270)
T KOG0725|consen  151 VAGVGPGP-------------------GSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSL  201 (270)
T ss_pred             cccccCCC-------------------CCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCc
Confidence            98776542                   22 7899999999999999999999999999999999999 88

>PRK05599 hypothetical protein; Provisional

Probab=99.98  E-value=6.2e-31  Score=224.43  Aligned_cols=199  Identities=16%  Similarity=0.127  Sum_probs=163.8

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||+      +|||+++|+.   ++ +|..|+  .|+.++++++.+++++.. ..++.+++||++|.+++++++
T Consensus         1 ~~vl-ItGas------~GIG~aia~~---l~-~g~~Vil~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~   68 (246)
T PRK05599          1 MSIL-ILGGT------SDIAGEIATL---LC-HGEDVVLAARRPEAAQGLASDLRQRG-ATSVHVLSFDAQDLDTHRELV   68 (246)
T ss_pred             CeEE-EEeCc------cHHHHHHHHH---Hh-CCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEcccCCHHHHHHHH
Confidence            3577 99999      9999999555   44 366555  489999999999887653 235788999999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccCC--CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccccCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGL--GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~--~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +++.+.++++|++|||||+...  ..+.+.+.+++.+++|+.+++.+++.++|.|.++. .  ++||++||..+..+.  
T Consensus        69 ~~~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~--g~Iv~isS~~~~~~~--  144 (246)
T PRK05599         69 KQTQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAP--AAIVAFSSIAGWRAR--  144 (246)
T ss_pred             HHHHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC--CEEEEEeccccccCC--
Confidence            9999999999999999998642  33456667788899999999999999999997653 5  899999999877654  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhcc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRV  259 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                                +       +...|++||+++.+|+++++.|+.++||+||+|+||+|+ ++.......             
T Consensus       145 ----------~-------~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~~~~-------------  194 (246)
T PRK05599        145 ----------R-------ANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTGMKPA-------------  194 (246)
T ss_pred             ----------c-------CCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcCCCCC-------------
Confidence                      2       567899999999999999999999999999999999999 876443211             


Q ss_pred             ccccCCHHHhhc
Q psy4251         260 RPVTNFQVDLTG  271 (292)
Q Consensus       260 ~~~~~~~~~~a~  271 (292)
                       ++..+|++.|.
T Consensus       195 -~~~~~pe~~a~  205 (246)
T PRK05599        195 -PMSVYPRDVAA  205 (246)
T ss_pred             -CCCCCHHHHHH
Confidence             12358888887

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.98  E-value=6.1e-31  Score=221.65  Aligned_cols=181  Identities=12%  Similarity=0.069  Sum_probs=157.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.+++++..+++.+.  +.++..+++|+++.+++
T Consensus         2 ~~~~k~~l-VtGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~l~~~~~~i~~~--~~~~~~~~~D~~~~~~~   69 (227)
T PRK08862          2 DIKSSIIL-ITSAG------SVLGRTI---SCHFARLGATLILCDQDQSALKDTYEQCSAL--TDNVYSFQLKDFSQESI   69 (227)
T ss_pred             CCCCeEEE-EECCc------cHHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCCeEEEEccCCCHHHH
Confidence            57899999 99999      9999999   6667788888764  8899999988888765  45788899999999999


Q ss_pred             HHHHHHHHHhCC-CccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccc
Q psy4251         100 KKFAEEYQKKFR-SLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESH  174 (292)
Q Consensus       100 ~~~~~~~~~~~~-~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~  174 (292)
                      +++++++.++++ +||++|||||...   +..+.+.++|.+.+++|+.+++.+++.++|+|.+++ .  |+||++||..+
T Consensus        70 ~~~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~--g~Iv~isS~~~  147 (227)
T PRK08862         70 RHLFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKK--GVIVNVISHDD  147 (227)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--ceEEEEecCCC
Confidence            999999999998 9999999998642   345667788999999999999999999999998653 5  89999999643


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-c
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-T  238 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~  238 (292)
                      .               +       +...|+++|+++.+|+++++.|+.++||+||+|+||+++ +
T Consensus       148 ~---------------~-------~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~  190 (227)
T PRK08862        148 H---------------Q-------DLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN  190 (227)
T ss_pred             C---------------C-------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence            2               1       456799999999999999999999999999999999999 6

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.98  E-value=6.4e-31  Score=227.90  Aligned_cols=188  Identities=16%  Similarity=0.136  Sum_probs=164.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+..|+.|+  .|+.+++++..+++...  +.++.++++|++|.+++
T Consensus         3 ~~~~k~vl-VTGas------~gIG~al---a~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~Dv~d~~~v   70 (275)
T PRK05876          3 GFPGRGAV-ITGGA------SGIGLAT---GTEFARRGARVVLGDVDKPGLRQAVNHLRAE--GFDVHGVMCDVRHREEV   70 (275)
T ss_pred             CcCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHH
Confidence            47899999 99999      9999999   555667777765  48888888888888655  45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~  176 (292)
                      .++++++.++++++|+||||||+.  .+..+.+.++|+..+++|+.+++.+++.++|.|.++. .  ++||++||..+..
T Consensus        71 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~--g~iv~isS~~~~~  148 (275)
T PRK05876         71 THLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTG--GHVVFTASFAGLV  148 (275)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC--CEEEEeCChhhcc
Confidence            999999999999999999999985  3566778899999999999999999999999997654 5  8999999998776


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       +...|++||+++.+|+++++.++..+||+|++|+||+++ ++..+
T Consensus       149 ~~------------~-------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~  196 (275)
T PRK05876        149 PN------------A-------GLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVAN  196 (275)
T ss_pred             CC------------C-------CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccc
Confidence            54            2       677899999999999999999998889999999999999 87654

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.98  E-value=4e-31  Score=231.60  Aligned_cols=189  Identities=19%  Similarity=0.191  Sum_probs=164.0

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +..+++.|+.|+  .|+.++++++.+++..   +.++..++||++|.+
T Consensus         4 ~~~l~gk~vl-ItGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~   70 (296)
T PRK05872          4 MTSLAGKVVV-VTGAA------RGIGAEL---ARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLA   70 (296)
T ss_pred             CCCCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHH
Confidence            4568899999 99999      9999999   555667777765  4888888887777642   346778889999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|++++++|+.+++.+++.++|.|.+. .  ++||++||.++.
T Consensus        71 ~v~~~~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~-~--g~iv~isS~~~~  147 (296)
T PRK05872         71 AMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIER-R--GYVLQVSSLAAF  147 (296)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-C--CEEEEEeCHhhc
Confidence            999999999999999999999999863  56677889999999999999999999999998764 3  899999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+.            +       +...|++||++++.|+++++.++..+||+|++++||+++ ++.+..
T Consensus       148 ~~~------------~-------~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~  197 (296)
T PRK05872        148 AAA------------P-------GMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDA  197 (296)
T ss_pred             CCC------------C-------CchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhc
Confidence            654            2       678999999999999999999999999999999999999 887653

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.98  E-value=1.1e-30  Score=225.17  Aligned_cols=239  Identities=13%  Similarity=0.105  Sum_probs=186.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++.+|+++ |||++      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+.  +.++.++++|+++.++
T Consensus         6 ~~~~~k~~l-ItGa~------~~iG~~i---a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~   73 (265)
T PRK07097          6 FSLKGKIAL-ITGAS------YGIGFAI---AKAYAKAGATIVFNDINQELVDKGLAAYREL--GIEAHGYVCDVTDEDG   73 (265)
T ss_pred             cCCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence            357899999 99999      9999999   555666777765  48888888888777654  4579999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.+++++.+++|+.+++.+++.++|+|.+++.  ++||++||..+..
T Consensus        74 ~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g~iv~isS~~~~~  151 (265)
T PRK07097         74 VQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGH--GKIINICSMMSEL  151 (265)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC--cEEEEEcCccccC
Confidence            99999999999999999999999864  4566788999999999999999999999999987766  9999999987665


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc---cCCccch
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR---FGTPVRT  252 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~---~~~~~~~  252 (292)
                      +.            +       +...|+++|+++..+++++++++.++||+||+|+||.++ ++......   .+....+
T Consensus       152 ~~------------~-------~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~  212 (265)
T PRK07097        152 GR------------E-------TVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPF  212 (265)
T ss_pred             CC------------C-------CCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhH
Confidence            43            2       567899999999999999999999999999999999999 76654311   0011111


Q ss_pred             hhhhhcc--ccccCCHHHhhc------ccccCCCCCccc-cCCccccCC
Q psy4251         253 FSWISRV--RPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWHYQY  292 (292)
Q Consensus       253 ~~~~~~~--~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~~~~  292 (292)
                      ..++...  ...+.+|++.|.      .......+|+.+ .+.-|.|+|
T Consensus       213 ~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~~  261 (265)
T PRK07097        213 DQFIIAKTPAARWGDPEDLAGPAVFLASDASNFVNGHILYVDGGILAYI  261 (265)
T ss_pred             HHHHHhcCCccCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCCceecc
Confidence            1111111  123557888876      333456677754 466677665

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.98  E-value=1.1e-30  Score=223.65  Aligned_cols=225  Identities=19%  Similarity=0.164  Sum_probs=173.3

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++||+++ ||||+      +|||+++   +.+|++.|+.|+.   ++.++.++...++...  +.++..+++|+++.+++
T Consensus         2 ~~~k~~l-ItGas------~gIG~~i---a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~   69 (252)
T PRK12747          2 LKGKVAL-VTGAS------RGIGRAI---AKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLHGV   69 (252)
T ss_pred             CCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhc--CCceEEEecccCCHHHH
Confidence            4689999 99999      9999999   6667778877753   5667777777777654  45678899999999999


Q ss_pred             HHHHHHHHHh----CC--CccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251         100 KKFAEEYQKK----FR--SLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus       100 ~~~~~~~~~~----~~--~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      ..+++++.+.    ++  ++|+||||||+..  +..+.+.++|++++++|+.++++++++++|.|.+  .  ++||++||
T Consensus        70 ~~~~~~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~--g~iv~isS  145 (252)
T PRK12747         70 EALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD--N--SRIINISS  145 (252)
T ss_pred             HHHHHHHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhc--C--CeEEEECC
Confidence            9999888753    33  8999999999753  3456678889999999999999999999999964  3  89999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV  250 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~  250 (292)
                      ..+..+.            +       +...|++||+++.+++++++.++.++||+||+|+||+|. ++.++........
T Consensus       146 ~~~~~~~------------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~  206 (252)
T PRK12747        146 AATRISL------------P-------DFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMK  206 (252)
T ss_pred             cccccCC------------C-------CchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCHHHH
Confidence            9877654            2       567899999999999999999999999999999999999 8865432211111


Q ss_pred             chhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+.... .....+.+|++.|.      ++.....+|+.+
T Consensus       207 ~~~~~~-~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i  244 (252)
T PRK12747        207 QYATTI-SAFNRLGEVEDIADTAAFLASPDSRWVTGQLI  244 (252)
T ss_pred             HHHHhc-CcccCCCCHHHHHHHHHHHcCccccCcCCcEE
Confidence            111110 01122468888887      444555677654

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.98  E-value=1.5e-30  Score=224.02  Aligned_cols=228  Identities=12%  Similarity=0.061  Sum_probs=180.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcc-cchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYT-GLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~-GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..++||+++ ||||+      + |||+++   +..++++|+.|+  .|+.+++++..+++++..+..++.++++|+++++
T Consensus        13 ~~~~~k~vl-ItG~s------g~gIG~~i---a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~   82 (262)
T PRK07831         13 GLLAGKVVL-VTAAA------GTGIGSAT---ARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEA   82 (262)
T ss_pred             cccCCCEEE-EECCC------cccHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHH
Confidence            456789999 99997      6 999999   555667777766  4778888888888876544457889999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~  174 (292)
                      +++++++++.+.++++|+||||||...  +..+.+.++|++.+++|+.+++.+++.++|.|..+. .  ++||+++|..+
T Consensus        83 ~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--g~iv~~ss~~~  160 (262)
T PRK07831         83 QVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHG--GVIVNNASVLG  160 (262)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--cEEEEeCchhh
Confidence            999999999999999999999999753  456677889999999999999999999999998765 5  89999999876


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       +...|+++|+++++++++++.++.++||+||+|+||+++ ++.+.....    ...
T Consensus       161 ~~~~------------~-------~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~----~~~  217 (262)
T PRK07831        161 WRAQ------------H-------GQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTSA----ELL  217 (262)
T ss_pred             cCCC------------C-------CCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccCH----HHH
Confidence            6543            2       567899999999999999999999999999999999999 876543111    111


Q ss_pred             hhhhccc--cccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVR--PVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~--~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+....  ....+|++.|.      ++.....+|+.+
T Consensus       218 ~~~~~~~~~~r~~~p~~va~~~~~l~s~~~~~itG~~i  255 (262)
T PRK07831        218 DELAAREAFGRAAEPWEVANVIAFLASDYSSYLTGEVV  255 (262)
T ss_pred             HHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCcCCceE
Confidence            1111111  12457888887      455566788755

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.98  E-value=1.4e-30  Score=223.18  Aligned_cols=226  Identities=15%  Similarity=0.161  Sum_probs=180.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.+++++..+++...  +.++..+++|++|.++
T Consensus         5 ~~l~~k~~l-ItGas------~giG~~i---a~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~   72 (254)
T PRK08085          5 FSLAGKNIL-ITGSA------QGIGFLL---ATGLAEYGAEIIINDITAERAELAVAKLRQE--GIKAHAAPFNVTHKQE   72 (254)
T ss_pred             ccCCCCEEE-EECCC------ChHHHHH---HHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEecCCCCHHH
Confidence            357899999 99999      9999999   5556677877764  8888888888888765  4578889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.++++++|+||||||...  +..+.+.++|++.+++|+.+++.+++++++.+.+++.  ++||++||..+..
T Consensus        73 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~isS~~~~~  150 (254)
T PRK08085         73 VEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQA--GKIINICSMQSEL  150 (254)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEEccchhcc
Confidence            99999999999999999999999863  4566788999999999999999999999999977666  8999999987665


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|+++|++++.+++++++++.++||++|+|+||+++ ++.+.....   ..+..+
T Consensus       151 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~---~~~~~~  208 (254)
T PRK08085        151 GR------------D-------TITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVED---EAFTAW  208 (254)
T ss_pred             CC------------C-------CCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccC---HHHHHH
Confidence            43            2       567899999999999999999999999999999999999 876653211   111122


Q ss_pred             hhccc--cccCCHHHhhc------ccccCCCCCcc
Q psy4251         256 ISRVR--PVTNFQVDLTG------TAEKVGLSGLP  282 (292)
Q Consensus       256 ~~~~~--~~~~~~~~~a~------~~~~~~~~G~~  282 (292)
                      .....  ....+|++.+.      .+.....+|+.
T Consensus       209 ~~~~~p~~~~~~~~~va~~~~~l~~~~~~~i~G~~  243 (254)
T PRK08085        209 LCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHL  243 (254)
T ss_pred             HHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCE
Confidence            11111  22457888876      44455556653

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.98  E-value=1.5e-30  Score=230.63  Aligned_cols=249  Identities=22%  Similarity=0.204  Sum_probs=179.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++|+++ ||||+      +|||+++   +.+|+.+|+.|+  +|+.++++++.+++...  +.++.++++|++|.+++
T Consensus         3 ~~~~k~vl-VTGas------~gIG~~~---a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v   70 (322)
T PRK07453          3 QDAKGTVI-ITGAS------SGVGLYA---AKALAKRGWHVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSV   70 (322)
T ss_pred             CCCCCEEE-EEcCC------ChHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHH
Confidence            45688999 99999      9999999   555667777665  58888888888887532  45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCC---CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGL---GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~---~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++.+.+++||+||||||+..+   ..+.+.++++.++++|++|+++++++++|.|++++...+|||++||..+..
T Consensus        71 ~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~  150 (322)
T PRK07453         71 RRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANP  150 (322)
T ss_pred             HHHHHHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCc
Confidence            99999988877899999999998643   245688899999999999999999999999987652115999999987654


Q ss_pred             ccCC-----CCCCCccccCc-----------CCCCCChhhhHHHHhHHHHHHHHHHHHhHhc-CCCeEEEEecCCcc-c-
Q psy4251         177 SYIT-----KDTISKSVLSV-----------ENYSDFWAMTAYNDTKLCNVLFGEKLATLWY-KYKIALSSRHCCWK-I-  237 (292)
Q Consensus       177 ~~~~-----~~~~~~~~~~~-----------~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~gi~v~~v~PG~v-~-  237 (292)
                      ....     ....+++++..           .....+.+...|+.||+++.++++.+++++. ..||++++|+||+| . 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t  230 (322)
T PRK07453        151 KELGGKIPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADT  230 (322)
T ss_pred             cccCCccCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCC
Confidence            2110     00112221110           0123456778999999999999999999995 45899999999999 4 


Q ss_pred             cccccccccCCccchhhhhhc-cccccCCHHHhhc-------ccccCCCCCccccC
Q psy4251         238 TVSKKWWRFGTPVRTFSWISR-VRPVTNFQVDLTG-------TAEKVGLSGLPDSE  285 (292)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~-------~~~~~~~~G~~~~~  285 (292)
                      ++.++...  ....+..++.+ ......+++++++       .+.. ..+|.||.+
T Consensus       231 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~y~~~  283 (322)
T PRK07453        231 PLFRNTPP--LFQKLFPWFQKNITGGYVSQELAGERVAQVVADPEF-AQSGVHWSW  283 (322)
T ss_pred             cccccCCH--HHHHHHHHHHHHHhhceecHHHHhhHHHHhhcCccc-CCCCceeec
Confidence            77665321  01111111100 1112356666653       3333 468999973

>PRK09242 tropinone reductase; Provisional

Probab=99.97  E-value=1.8e-30  Score=222.93  Aligned_cols=236  Identities=16%  Similarity=0.124  Sum_probs=186.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +..+++.|+.|+  .|+.+.+++..+++....++.++.++++|+++.++
T Consensus         5 ~~~~~k~~l-ItGa~------~gIG~~~---a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~   74 (257)
T PRK09242          5 WRLDGQTAL-ITGAS------KGIGLAI---AREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDED   74 (257)
T ss_pred             cccCCCEEE-EeCCC------chHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHH
Confidence            467899999 99999      9999999   555667777765  58888888888888777666789999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.+.++++|+||||||...  +..+.+.+++++.+.+|+.+++.++++++|+|.+++.  ++||++||..+..
T Consensus        75 ~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~ii~~sS~~~~~  152 (257)
T PRK09242         75 RRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHAS--SAIVNIGSVSGLT  152 (257)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--ceEEEECccccCC
Confidence            99999999999999999999999853  4566788999999999999999999999999988776  8999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|+++|.++..++++++.++.+.||++|+|+||+++ ++.+.....   ..+...
T Consensus       153 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~---~~~~~~  210 (257)
T PRK09242        153 HV------------R-------SGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSD---PDYYEQ  210 (257)
T ss_pred             CC------------C-------CCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCC---hHHHHH
Confidence            43            2       567899999999999999999999889999999999999 876643221   111111


Q ss_pred             hhc--cccccCCHHHhhc------ccccCCCCCccc--cCCcccc
Q psy4251         256 ISR--VRPVTNFQVDLTG------TAEKVGLSGLPD--SEWMWHY  290 (292)
Q Consensus       256 ~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~--~~~~w~~  290 (292)
                      ...  ......++++.+.      ++.....+|+.+  ..+.+.|
T Consensus       211 ~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg~~~~  255 (257)
T PRK09242        211 VIERTPMRRVGEPEEVAAAVAFLCMPAASYITGQCIAVDGGFLRY  255 (257)
T ss_pred             HHhcCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEECCCeEee
Confidence            111  1123457887776      333344567754  3344444

>PLN00015 protochlorophyllide reductase

Probab=99.97  E-value=9.6e-31  Score=230.40  Aligned_cols=240  Identities=23%  Similarity=0.265  Sum_probs=173.6

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      |||||+      +|||+++   +.+|+++| +.|+  .|+.++++++.+++...  +.++.++++|++|.++++++++++
T Consensus         1 lITGas------~GIG~ai---a~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~v~~~~~~~   69 (308)
T PLN00015          1 IITGAS------SGLGLAT---AKALAETGKWHVVMACRDFLKAERAAKSAGMP--KDSYTVMHLDLASLDSVRQFVDNF   69 (308)
T ss_pred             CEeCCC------ChHHHHH---HHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEecCCCHHHHHHHHHHH
Confidence            499999      9999999   55566677 6655  48888888877777432  457888999999999999999999


Q ss_pred             HHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC--CCCcEEEEEcCcccccccCC-
Q psy4251         107 QKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA--KLFARVVVVSSESHRYSYIT-  180 (292)
Q Consensus       107 ~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~--~~~~~iV~vsS~~~~~~~~~-  180 (292)
                      .+.+++||+||||||+..   +..+.+.++|+.++++|+.|++++++.++|.|.+++  .  ++||++||..+..+... 
T Consensus        70 ~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~--g~IV~vsS~~~~~~~~~~  147 (308)
T PLN00015         70 RRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPS--KRLIIVGSITGNTNTLAG  147 (308)
T ss_pred             HhcCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCC--CEEEEEeccccccccccc
Confidence            988889999999999863   345678899999999999999999999999998765  5  89999999876532110 


Q ss_pred             --CCCCCccccC-------------cCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC-CCeEEEEecCCcc-c-ccccc
Q psy4251         181 --KDTISKSVLS-------------VENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK-YKIALSSRHCCWK-I-TVSKK  242 (292)
Q Consensus       181 --~~~~~~~~~~-------------~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~gi~v~~v~PG~v-~-~~~~~  242 (292)
                        ....+++++.             ......+.+..+|++||+|+.++++.+++++.. .||+|++|+||+| . +|.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~  227 (308)
T PLN00015        148 NVPPKANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFRE  227 (308)
T ss_pred             cCCCccchhhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCcccccc
Confidence              0001111110             000123457789999999999999999999965 6999999999999 6 77654


Q ss_pred             ccccCCccchhhhhhc-cccccCCHHHhhc------ccccCCCCCcccc
Q psy4251         243 WWRFGTPVRTFSWISR-VRPVTNFQVDLTG------TAEKVGLSGLPDS  284 (292)
Q Consensus       243 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~------~~~~~~~~G~~~~  284 (292)
                      ....  .......+.. ......+|+++|.      .......+|.||.
T Consensus       228 ~~~~--~~~~~~~~~~~~~~~~~~pe~~a~~~~~l~~~~~~~~~G~~~~  274 (308)
T PLN00015        228 HIPL--FRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWS  274 (308)
T ss_pred             ccHH--HHHHHHHHHHHHhcccccHHHhhhhhhhhccccccCCCccccc
Confidence            2110  0111000000 1112468898887      2233456899885

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.97  E-value=2e-30  Score=222.35  Aligned_cols=228  Identities=18%  Similarity=0.158  Sum_probs=179.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..+++|+++ ||||+      +|||+++   +..|.++|+.|+  .|+.+..++..+++.+.  +.++.++++|+++.++
T Consensus         7 ~~l~~k~vl-VtG~s------~gIG~~l---a~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~   74 (255)
T PRK06113          7 LRLDGKCAI-ITGAG------AGIGKEI---AITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQE   74 (255)
T ss_pred             cCcCCCEEE-EECCC------chHHHHH---HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence            357899999 99999      9999999   555667777665  47888888888877654  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC-CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~-~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +.++++.+.+.++++|++|||||... ...+.+.++++..+++|+.+++.++++++|.|.+.+.  ++||++||..+..+
T Consensus        75 i~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~isS~~~~~~  152 (255)
T PRK06113         75 LSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG--GVILTITSMAAENK  152 (255)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCC--cEEEEEecccccCC
Confidence            99999999999999999999999864 2345678899999999999999999999999987666  89999999877654


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|+++|+++++++++++.++.+.||+||+|+||+++ ++.+...............
T Consensus       153 ~------------~-------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~  213 (255)
T PRK06113        153 N------------I-------NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHT  213 (255)
T ss_pred             C------------C-------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccccCHHHHHHHHhcC
Confidence            4            2       567899999999999999999999999999999999999 8765431110111111111


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ......+|++.+.      .+.....+|+.+
T Consensus       214 --~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~i  244 (255)
T PRK06113        214 --PIRRLGQPQDIANAALFLCSPAASWVSGQIL  244 (255)
T ss_pred             --CCCCCcCHHHHHHHHHHHcCccccCccCCEE
Confidence              1123468888887      444455567654

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.97  E-value=2e-30  Score=221.88  Aligned_cols=227  Identities=14%  Similarity=0.125  Sum_probs=180.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++|+++ ||||+      +|||+++   +.+|.+.|..|+  .|+.+++++..+++.+.  +.++.++++|+++.++
T Consensus         4 ~~l~~k~vl-ItGas------~gIG~~l---~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   71 (252)
T PRK07035          4 FDLTGKIAL-VTGAS------RGIGEAI---AKLLAQQGAHVIVSSRKLDGCQAVADAIVAA--GGKAEALACHIGEMEQ   71 (252)
T ss_pred             cccCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHH
Confidence            468899999 99999      9999999   555556676665  48888888888888655  4578889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+.++++|++|||||..   .+..+.+.++++..+++|+.+++.++++++|++.++..  ++||++||..+.
T Consensus        72 ~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~  149 (252)
T PRK07035         72 IDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGG--GSIVNVASVNGV  149 (252)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC--cEEEEECchhhc
Confidence            9999999999999999999999974   34456788889999999999999999999999987666  899999998776


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||++++.+++++++++.++||+|++|+||.|+ ++.+......   ....
T Consensus       150 ~~~------------~-------~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~---~~~~  207 (252)
T PRK07035        150 SPG------------D-------FQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKND---AILK  207 (252)
T ss_pred             CCC------------C-------CCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCH---HHHH
Confidence            543            2       567899999999999999999999999999999999999 8766532210   1111


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...+  ......+|++.|+      .......+|+.+
T Consensus       208 ~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~  244 (252)
T PRK07035        208 QALAHIPLRRHAEPSEMAGAVLYLASDASSYTTGECL  244 (252)
T ss_pred             HHHccCCCCCcCCHHHHHHHHHHHhCccccCccCCEE
Confidence            1111  1122568888887      344455677654

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.97  E-value=3.2e-30  Score=223.82  Aligned_cols=230  Identities=18%  Similarity=0.179  Sum_probs=180.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++|+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+.+++..+++.+.  +.++.++++|++++++
T Consensus         6 ~~~~~k~vl-VtGas------~giG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~   73 (278)
T PRK08277          6 FSLKGKVAV-ITGGG------GVLGGAM---AKELARAGAKVAILDRNQEKAEAVVAEIKAA--GGEALAVKADVLDKES   73 (278)
T ss_pred             eccCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            357899999 99999      9999999   555667777765  48888888888887654  4578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCC-----------------CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGL-----------------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK  161 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~-----------------~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~  161 (292)
                      +.++++++.++++++|++|||||...+                 ..+.+.++|+..+++|+.+++.++++++|.|.+++.
T Consensus        74 v~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~  153 (278)
T PRK08277         74 LEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKG  153 (278)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999996532                 345667889999999999999999999999987766


Q ss_pred             CCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         162 LFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       162 ~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                        ++||++||..+..+.            +       +...|++||++++.++++++.++.+.||+||+|+||+|. ++.
T Consensus       154 --g~ii~isS~~~~~~~------------~-------~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~  212 (278)
T PRK08277        154 --GNIINISSMNAFTPL------------T-------KVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQN  212 (278)
T ss_pred             --cEEEEEccchhcCCC------------C-------CCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcch
Confidence              999999999877654            2       567899999999999999999999999999999999999 876


Q ss_pred             cccccc--CCccchhhhhhc--cccccCCHHHhhc------cc-ccCCCCCccc
Q psy4251         241 KKWWRF--GTPVRTFSWISR--VRPVTNFQVDLTG------TA-EKVGLSGLPD  283 (292)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~a~------~~-~~~~~~G~~~  283 (292)
                      +.....  +........+..  ......+|++.|.      ++ .....+|+.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i  266 (278)
T PRK08277        213 RALLFNEDGSLTERANKILAHTPMGRFGKPEELLGTLLWLADEKASSFVTGVVL  266 (278)
T ss_pred             hhhhccccccchhHHHHHhccCCccCCCCHHHHHHHHHHHcCccccCCcCCCEE
Confidence            543211  110111111101  1122457888886      44 4566777654

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.97  E-value=2.3e-30  Score=222.34  Aligned_cols=227  Identities=17%  Similarity=0.160  Sum_probs=176.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +..|++.|+.|+  .|+ ++.++..+.+.+.  +.++.++++|+++.++
T Consensus        11 ~~l~~k~vl-ItGas------~gIG~~i---a~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   77 (258)
T PRK06935         11 FSLDGKVAI-VTGGN------TGLGQGY---AVALAKAGADIIITTHG-TNWDETRRLIEKE--GRKVTFVQVDLTKPES   77 (258)
T ss_pred             ccCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence            457899999 99999      9999999   555667787765  466 5555665555443  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.+.++++|++|||||...  +..+.+.++|+..+++|+.+++.++++++|.|.++..  ++||++||..+..
T Consensus        78 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~  155 (258)
T PRK06935         78 AEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGS--GKIINIASMLSFQ  155 (258)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCC--eEEEEECCHHhcc
Confidence            99999999999999999999999863  4456678899999999999999999999999987766  8999999988765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc-cchhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP-VRTFS  254 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~-~~~~~  254 (292)
                      +.            +       ....|+++|++++.+++++++++.++||+||+|+||+++ ++.+........ .....
T Consensus       156 ~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~  216 (258)
T PRK06935        156 GG------------K-------FVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILK  216 (258)
T ss_pred             CC------------C-------CchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHh
Confidence            54            2       567899999999999999999999999999999999999 876543211000 01111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ...-..+|++.+.      ++.....+|+.+
T Consensus       217 ~~--~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i  249 (258)
T PRK06935        217 RI--PAGRWGEPDDLMGAAVFLASRASDYVNGHIL  249 (258)
T ss_pred             cC--CCCCCCCHHHHHHHHHHHcChhhcCCCCCEE
Confidence            11  1123567787776      444455566643

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.97  E-value=3.6e-30  Score=221.59  Aligned_cols=224  Identities=14%  Similarity=0.096  Sum_probs=174.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++|+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++     +.++.++++|++|.+++
T Consensus         3 ~~~~k~vl-ItGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~   67 (261)
T PRK08265          3 GLAGKVAI-VTGGA------TLIGAAV---ARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAI   67 (261)
T ss_pred             CCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHH
Confidence            57789999 99999      9999999   666677887776  48877777666554     34788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC-CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~-~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      .++++++.++++++|+||||||... ...+.+.++|++.+++|+.+++.++++++|.|. ++.  ++||++||.++..+.
T Consensus        68 ~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~--g~ii~isS~~~~~~~  144 (261)
T PRK08265         68 ERAVATVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLA-RGG--GAIVNFTSISAKFAQ  144 (261)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cCC--cEEEEECchhhccCC
Confidence            9999999999999999999999863 234567889999999999999999999999997 445  899999998877654


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc--cchhhh
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP--VRTFSW  255 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~--~~~~~~  255 (292)
                                  +       ....|+++|+++..++++++.++.+.||+||+|+||+++ ++.+........  ..+...
T Consensus       145 ------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~  205 (261)
T PRK08265        145 ------------T-------GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP  205 (261)
T ss_pred             ------------C-------CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc
Confidence                        2       567899999999999999999999999999999999999 876543211000  011100


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      . .....+.+|++.|.      ++.....+|+.+
T Consensus       206 ~-~p~~r~~~p~dva~~~~~l~s~~~~~~tG~~i  238 (261)
T PRK08265        206 F-HLLGRVGDPEEVAQVVAFLCSDAASFVTGADY  238 (261)
T ss_pred             c-CCCCCccCHHHHHHHHHHHcCccccCccCcEE
Confidence            0 01112457888887      444456677643

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=1e-30  Score=206.68  Aligned_cols=182  Identities=19%  Similarity=0.154  Sum_probs=158.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .++|-|++ ||||+      +|||+++|+.+.++ +..++|.+|++++++++.++.      ..+....||+.|.+++++
T Consensus         2 k~tgnTiL-ITGG~------sGIGl~lak~f~el-gN~VIi~gR~e~~L~e~~~~~------p~~~t~v~Dv~d~~~~~~   67 (245)
T COG3967           2 KTTGNTIL-ITGGA------SGIGLALAKRFLEL-GNTVIICGRNEERLAEAKAEN------PEIHTEVCDVADRDSRRE   67 (245)
T ss_pred             cccCcEEE-EeCCc------chhhHHHHHHHHHh-CCEEEEecCcHHHHHHHHhcC------cchheeeecccchhhHHH
Confidence            46788999 99999      99999996665555 333455569999988877653      367888999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCC----CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLG----FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~----~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      ++++++++++.+++||||||++...    .+...++.++.+.+|++++..++..++|++.+++.  +.||+|||..+..+
T Consensus        68 lvewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~--a~IInVSSGLafvP  145 (245)
T COG3967          68 LVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPE--ATIINVSSGLAFVP  145 (245)
T ss_pred             HHHHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--ceEEEeccccccCc
Confidence            9999999999999999999998531    23456678899999999999999999999999887  99999999998887


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-c
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-T  238 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~  238 (292)
                      ..                   ..+.||++|+|++.++.+|..+++..+|.|.-+.|-.|+ +
T Consensus       146 m~-------------------~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~  188 (245)
T COG3967         146 MA-------------------STPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT  188 (245)
T ss_pred             cc-------------------ccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence            62                   577999999999999999999999999999999999999 5

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.97  E-value=4.7e-30  Score=219.72  Aligned_cols=228  Identities=14%  Similarity=0.126  Sum_probs=181.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||.++   +.+|++.|..|+  .|+.+++++..+++.+.  +.++.++++|+++.++
T Consensus         3 ~~l~~k~il-ItGas------~~iG~~i---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   70 (253)
T PRK06172          3 MTFSGKVAL-VTGGA------AGIGRAT---ALAFAREGAKVVVADRDAAGGEETVALIREA--GGEALFVACDVTRDAE   70 (253)
T ss_pred             cCCCCCEEE-EeCCC------chHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence            357899999 99999      9999999   555566676665  48888888888877655  5678999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +.++++++.+.++++|++|||||...   +..+.+.+++++++++|+.+++.++++++|.+.++..  ++||++||..+.
T Consensus        71 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~ii~~sS~~~~  148 (253)
T PRK06172         71 VKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGG--GAIVNTASVAGL  148 (253)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEECchhhc
Confidence            99999999999999999999999853   2456788999999999999999999999999987766  899999998777


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|+.+|++++.|+++++.++.++||+|++|+||.|+ ++.+.....  ......
T Consensus       149 ~~~------------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~--~~~~~~  207 (253)
T PRK06172        149 GAA------------P-------KMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEA--DPRKAE  207 (253)
T ss_pred             cCC------------C-------CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhccc--ChHHHH
Confidence            654            2       677899999999999999999999999999999999999 887654221  111111


Q ss_pred             hhhcccc--ccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRP--VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+....+  -+.+|++.+.      .+.....+|+.+
T Consensus       208 ~~~~~~~~~~~~~p~~ia~~~~~l~~~~~~~~~G~~i  244 (253)
T PRK06172        208 FAAAMHPVGRIGKVEEVASAVLYLCSDGASFTTGHAL  244 (253)
T ss_pred             HHhccCCCCCccCHHHHHHHHHHHhCccccCcCCcEE
Confidence            1111111  2458888887      333456677754

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.97  E-value=8.4e-30  Score=222.80  Aligned_cols=195  Identities=15%  Similarity=0.146  Sum_probs=162.8

Q ss_pred             CCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccC
Q psy4251          16 LLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDL   93 (292)
Q Consensus        16 ~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl   93 (292)
                      .+.+..+++|++++ ||||+      +|||+++   +..|++.|+.|+  .|+.+++++..+++...  +.++.++++|+
T Consensus        31 ~~~~~~~~~~k~vl-ItGas------ggIG~~l---a~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--~~~~~~~~~Dl   98 (293)
T PRK05866         31 PPRQPVDLTGKRIL-LTGAS------SGIGEAA---AEQFARRGATVVAVARREDLLDAVADRITRA--GGDAMAVPCDL   98 (293)
T ss_pred             CCCCCcCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccC
Confidence            34456778899998 99999      9999999   555666777765  58888888888888654  45788999999


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccCC--CCCC--CCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL--GFSH--TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV  169 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~--~~~~--~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v  169 (292)
                      +|.+++.++++++.+.++++|++|||||....  ..+.  +.++++.++++|+.|++.++++++|.|.+.+.  ++||++
T Consensus        99 ~d~~~v~~~~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~i  176 (293)
T PRK05866         99 SDLDAVDALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGD--GHIINV  176 (293)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cEEEEE
Confidence            99999999999999999999999999998632  2221  34678899999999999999999999988777  999999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      ||.++.....           +       ....|++||+++.+|+++++.|+.++||+|++|+||+|+ ++.+.
T Consensus       177 sS~~~~~~~~-----------p-------~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~  232 (293)
T PRK05866        177 ATWGVLSEAS-----------P-------LFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP  232 (293)
T ss_pred             CChhhcCCCC-----------C-------CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc
Confidence            9975443211           2       567899999999999999999999999999999999999 88754

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.97  E-value=3.2e-30  Score=220.06  Aligned_cols=225  Identities=16%  Similarity=0.212  Sum_probs=173.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||.++   +.+|+++|+.|+.  |+.  ..+..+.+.+.  +.++.++++|+++.+++
T Consensus         2 ~~~~k~vl-ItGas------~gIG~~i---a~~l~~~G~~vi~~~r~~--~~~~~~~~~~~--~~~~~~~~~D~~~~~~~   67 (248)
T TIGR01832         2 SLEGKVAL-VTGAN------TGLGQGI---AVGLAEAGADIVGAGRSE--PSETQQQVEAL--GRRFLSLTADLSDIEAI   67 (248)
T ss_pred             CCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEcCch--HHHHHHHHHhc--CCceEEEECCCCCHHHH
Confidence            47899999 99999      9999999   6667778888775  543  34445555443  45789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~  176 (292)
                      ..+++++.+.++++|++|||||...  +..+.+.++|++.+++|+.+++.++++++|.|.++. .  ++||++||..+..
T Consensus        68 ~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~--g~iv~~sS~~~~~  145 (248)
T TIGR01832        68 KALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRG--GKIINIASMLSFQ  145 (248)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC--eEEEEEecHHhcc
Confidence            9999999998899999999999864  345667789999999999999999999999997654 5  8999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC-ccchhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT-PVRTFS  254 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~-~~~~~~  254 (292)
                      +.            +       ....|+.+|+++..+++++++++.++||+||+|+||++. ++.+....... ...+..
T Consensus       146 ~~------------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~  206 (248)
T TIGR01832       146 GG------------I-------RVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILE  206 (248)
T ss_pred             CC------------C-------CCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHh
Confidence            43            2       456899999999999999999999999999999999999 87654311100 001111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|+      ++.....+|+++
T Consensus       207 ~~--~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i  239 (248)
T TIGR01832       207 RI--PAGRWGTPDDIGGPAVFLASSASDYVNGYTL  239 (248)
T ss_pred             cC--CCCCCcCHHHHHHHHHHHcCccccCcCCcEE
Confidence            11  1123567888887      344455677754

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.97  E-value=5.1e-30  Score=219.86  Aligned_cols=226  Identities=17%  Similarity=0.179  Sum_probs=169.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +..|++.|+.|+.  ++.+.   ..+++.+.    .+.++++|++|+++
T Consensus         3 ~~l~~k~~l-ItGas------~gIG~~~---a~~l~~~G~~v~~~~~~~~~---~~~~l~~~----~~~~~~~Dl~~~~~   65 (255)
T PRK06463          3 MRFKGKVAL-ITGGT------RGIGRAI---AEAFLREGAKVAVLYNSAEN---EAKELREK----GVFTIKCDVGNRDQ   65 (255)
T ss_pred             CCcCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCcHH---HHHHHHhC----CCeEEEecCCCHHH
Confidence            356789999 99999      9999999   6666778877763  33322   22333322    47789999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.+++.+++.++|.|.++..  ++||++||..+..
T Consensus        66 ~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~--g~iv~isS~~~~~  143 (255)
T PRK06463         66 VKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKN--GAIVNIASNAGIG  143 (255)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC--cEEEEEcCHHhCC
Confidence            99999999999999999999999863  4556788899999999999999999999999987666  8999999987653


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      ...           +       +...|++||+++.+|+++++.++.+.||+||+|+||+++ ++................
T Consensus       144 ~~~-----------~-------~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~  205 (255)
T PRK06463        144 TAA-----------E-------GTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLREL  205 (255)
T ss_pred             CCC-----------C-------CccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHH
Confidence            221           2       457899999999999999999999999999999999999 876542111100111111


Q ss_pred             hhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ......+|++.|+      ++.....+|+.+
T Consensus       206 ~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~  241 (255)
T PRK06463        206 FRNKTVLKTTGKPEDIANIVLFLASDDARYITGQVI  241 (255)
T ss_pred             HHhCCCcCCCcCHHHHHHHHHHHcChhhcCCCCCEE
Confidence            111  1122468888887      333445667654

>PRK07985 oxidoreductase; Provisional

Probab=99.97  E-value=4.2e-30  Score=224.86  Aligned_cols=224  Identities=17%  Similarity=0.111  Sum_probs=172.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC--HHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC--WDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      +++||+++ ||||+      +|||+++   +..|++.|+.|+.  |+  .+..+++.+.+.+.  +.++.++++|++|.+
T Consensus        46 ~~~~k~vl-ITGas------~gIG~ai---a~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~  113 (294)
T PRK07985         46 RLKDRKAL-VTGGD------SGIGRAA---AIAYAREGADVAISYLPVEEEDAQDVKKIIEEC--GRKAVLLPGDLSDEK  113 (294)
T ss_pred             ccCCCEEE-EECCC------CcHHHHH---HHHHHHCCCEEEEecCCcchhhHHHHHHHHHHc--CCeEEEEEccCCCHH
Confidence            47889999 99999      9999999   6667778888775  32  34455555555443  457888999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++.++++++.+.++++|++|||||..   .+..+.+.++|++++++|+.+++.++++++|.|.+  .  ++||++||..+
T Consensus       114 ~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~--g~iv~iSS~~~  189 (294)
T PRK07985        114 FARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPK--G--ASIITTSSIQA  189 (294)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhc--C--CEEEEECCchh
Confidence            99999999999999999999999974   24567788999999999999999999999999964  3  89999999877


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       ....|+++|+++.+++++++.++.++||+||+|+||+|. ++......   .....
T Consensus       190 ~~~~------------~-------~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~---~~~~~  247 (294)
T PRK07985        190 YQPS------------P-------HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ---TQDKI  247 (294)
T ss_pred             ccCC------------C-------CcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCC---CHHHH
Confidence            6553            2       567899999999999999999999999999999999999 87532110   11111


Q ss_pred             hhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+..  ......+|++.|.      ++.....+|+.+
T Consensus       248 ~~~~~~~~~~r~~~pedva~~~~fL~s~~~~~itG~~i  285 (294)
T PRK07985        248 PQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVH  285 (294)
T ss_pred             HHHhccCCCCCCCCHHHHHHHHHhhhChhcCCccccEE
Confidence            11111  1122568888887      444555666643

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.97  E-value=5.1e-30  Score=220.36  Aligned_cols=223  Identities=14%  Similarity=0.054  Sum_probs=173.6

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      +|||+++   +.+++++|+.|+  .|+.+++++..+++.+.   .++.++++|++|.++++++++
T Consensus         2 ~vl-ItGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~   68 (259)
T PRK08340          2 NVL-VTASS------RGIGFNV---ARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVK   68 (259)
T ss_pred             eEE-EEcCC------cHHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHH
Confidence            467 99999      9999999   555667777766  48888888888888653   368889999999999999999


Q ss_pred             HHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh-cCCCCcEEEEEcCcccccccC
Q psy4251         105 EYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-GAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~-~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++.++++++|+||||||...    +..+.+.++|.+.+.+|+.+++.+++.++|.|.+ +..  ++||++||..+..+. 
T Consensus        69 ~~~~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~--g~iv~isS~~~~~~~-  145 (259)
T PRK08340         69 EAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMK--GVLVYLSSVSVKEPM-  145 (259)
T ss_pred             HHHHhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC--CEEEEEeCcccCCCC-
Confidence            99999999999999999752    2456677889999999999999999999998863 445  899999998776543 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc-------cCCccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR-------FGTPVR  251 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~-------~~~~~~  251 (292)
                                 +       +...|+++|+++..++++++.++.++||+||+|+||+++ ++.+....       ......
T Consensus       146 -----------~-------~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~  207 (259)
T PRK08340        146 -----------P-------PLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEET  207 (259)
T ss_pred             -----------C-------CchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHH
Confidence                       2       567899999999999999999999999999999999999 87653211       000000


Q ss_pred             hhhhh-hc-cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWI-SR-VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~-~~-~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....+ .+ ....+.+|+|.|.      ++.....+|+..
T Consensus       208 ~~~~~~~~~p~~r~~~p~dva~~~~fL~s~~~~~itG~~i  247 (259)
T PRK08340        208 WEREVLERTPLKRTGRWEELGSLIAFLLSENAEYMLGSTI  247 (259)
T ss_pred             HHHHHhccCCccCCCCHHHHHHHHHHHcCcccccccCceE
Confidence            00111 11 1123568898887      555667778743

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.97  E-value=6.9e-30  Score=219.22  Aligned_cols=230  Identities=13%  Similarity=0.039  Sum_probs=171.3

Q ss_pred             EEEcCCCCCCCCcccchhhHHHHHHHH-hhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          29 ILCTGDMEFYPRYTGLKKKDGNLCFDL-VQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        29 vlItGa~~~~~~~~GiG~~~a~~~~~l-~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      +|||||+      +|||+++|+.+.+. ...|..|+  .|+.++++++.+++....++.++.++++|+++.+++++++++
T Consensus         3 vlItGas------~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~   76 (256)
T TIGR01500         3 CLVTGAS------RGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKA   76 (256)
T ss_pred             EEEecCC------CchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHH
Confidence            3499999      99999996655432 12576655  589999999988887654456889999999999999999999


Q ss_pred             HHHhCCCc----cEEEEcccccCC----CCCC-CCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         106 YQKKFRSL----NILVLNAGVFGL----GFSH-TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       106 ~~~~~~~i----d~lI~nAg~~~~----~~~~-~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.+.++++    |+||||||....    ..+. +.++|++.+++|+.+++.+++.++|.|.++....++||++||..+..
T Consensus        77 ~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~  156 (256)
T TIGR01500        77 LRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ  156 (256)
T ss_pred             HHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC
Confidence            98877643    699999998532    1222 45789999999999999999999999986531117999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||+++..|+++++.++.+.||+||+|+||+|+ ++.+..............
T Consensus       157 ~~------------~-------~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~  217 (256)
T TIGR01500       157 PF------------K-------GWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKG  217 (256)
T ss_pred             CC------------C-------CchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHH
Confidence            54            2       677899999999999999999999999999999999999 887643211000011111


Q ss_pred             hh--ccccccCCHHHhhc-----ccccCCCCCccc
Q psy4251         256 IS--RVRPVTNFQVDLTG-----TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~--~~~~~~~~~~~~a~-----~~~~~~~~G~~~  283 (292)
                      +.  .....+.+|++.|.     .......+|+.+
T Consensus       218 ~~~~~~~~~~~~p~eva~~~~~l~~~~~~~~G~~~  252 (256)
T TIGR01500       218 LQELKAKGKLVDPKVSAQKLLSLLEKDKFKSGAHV  252 (256)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCcCCccee
Confidence            10  01223568999887     334456677743

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK08643 acetoin reductase; Validated

Probab=99.97  E-value=7.3e-30  Score=218.89  Aligned_cols=232  Identities=16%  Similarity=0.098  Sum_probs=179.8

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ||+++ ||||+      +|||.++   +..|++.|+.|+  .|+.+++++..+++.+.  +.++.++++|++++++++++
T Consensus         2 ~k~~l-ItGas------~giG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~   69 (256)
T PRK08643          2 SKVAL-VTGAG------QGIGFAI---AKRLVEDGFKVAIVDYNEETAQAAADKLSKD--GGKAIAVKADVSDRDQVFAA   69 (256)
T ss_pred             CCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHH
Confidence            67888 99999      9999999   555667777765  48888888888888654  45788999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccccC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++++.+++++||++|||||+..  +..+.+.++++..+++|+.+++.+++.+++.|.+.+ .  ++||++||..+..+. 
T Consensus        70 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~~~~-  146 (256)
T PRK08643         70 VRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHG--GKIINATSQAGVVGN-  146 (256)
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--CEEEEECccccccCC-
Confidence            9999999999999999999863  456677889999999999999999999999997653 4  799999998776554 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc-----CCccch-
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF-----GTPVRT-  252 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~-----~~~~~~-  252 (292)
                                 +       +...|+++|++++.++++++.++.++||+||+|+||+++ ++.......     +.+..+ 
T Consensus       147 -----------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~  208 (256)
T PRK08643        147 -----------P-------ELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWG  208 (256)
T ss_pred             -----------C-------CCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHH
Confidence                       2       567899999999999999999999999999999999999 876543210     011111 


Q ss_pred             hhhh-hc-cccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         253 FSWI-SR-VRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       253 ~~~~-~~-~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      .... .. ....+.++++.|.      ++.....+|+.+ .|.-|.
T Consensus       209 ~~~~~~~~~~~~~~~~~~va~~~~~L~~~~~~~~~G~~i~vdgg~~  254 (256)
T PRK08643        209 MEQFAKDITLGRLSEPEDVANCVSFLAGPDSDYITGQTIIVDGGMV  254 (256)
T ss_pred             HHHHhccCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCCee
Confidence            0111 00 1223457888877      455667788865 244343

>PRK06128 oxidoreductase; Provisional

Probab=99.97  E-value=4.2e-30  Score=225.58  Aligned_cols=185  Identities=21%  Similarity=0.168  Sum_probs=157.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC--HHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC--WDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++||+++ ||||+      +|||+++   +..|++.|+.|+.  ++  ....++..+.+.+.  +.++.+++||+++.+
T Consensus        52 ~l~~k~vl-ITGas------~gIG~~~---a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~  119 (300)
T PRK06128         52 RLQGRKAL-ITGAD------SGIGRAT---AIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--GRKAVALPGDLKDEA  119 (300)
T ss_pred             ccCCCEEE-EecCC------CcHHHHH---HHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc--CCeEEEEecCCCCHH
Confidence            47789999 99999      9999999   5556677877764  33  33455666666554  557889999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +++++++++.+.++++|+||||||...   +..+.+.++|+..+++|+.+++.++++++|.|.+  .  ++||++||..+
T Consensus       120 ~v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~--~~iv~~sS~~~  195 (300)
T PRK06128        120 FCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPP--G--ASIINTGSIQS  195 (300)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCc--C--CEEEEECCccc
Confidence            999999999999999999999999752   4567788999999999999999999999999864  3  89999999887


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      ..+.            +       +...|++||++++.|++++++++.++||+||+|+||++. ++..
T Consensus       196 ~~~~------------~-------~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~  244 (300)
T PRK06128        196 YQPS------------P-------TLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQP  244 (300)
T ss_pred             cCCC------------C-------CchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcc
Confidence            7554            2       567899999999999999999999999999999999999 8764

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.97  E-value=7.2e-30  Score=221.16  Aligned_cols=226  Identities=14%  Similarity=0.056  Sum_probs=175.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHH-------HHHHHHHHHHhhCCCCceEEEEcc
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWD-------KANDAISKILTEKPSAQCIAMELD   92 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~-------~~~~~~~~l~~~~~~~~~~~~~~D   92 (292)
                      +++||+++ ||||+      +|||.++   +..|++.|+.|+  .|+.+       ++++..+++...  +.++.++++|
T Consensus         3 ~~~~k~vl-ItGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~D   70 (273)
T PRK08278          3 SLSGKTLF-ITGAS------RGIGLAI---ALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA--GGQALPLVGD   70 (273)
T ss_pred             CCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhc--CCceEEEEec
Confidence            46789998 99999      9999999   555667777765  36543       245556666554  5578999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          93 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        93 ls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      +++.+++.++++++.+.++++|+||||||...  +..+.+.+++++.+++|+.+++.++++++|.|.++..  ++||++|
T Consensus        71 ~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~--g~iv~is  148 (273)
T PRK08278         71 VRDEDQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSEN--PHILTLS  148 (273)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCC--CEEEEEC
Confidence            99999999999999999999999999999853  4566788899999999999999999999999987766  8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCC-ccc-cccccccccCC
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCC-WKI-TVSKKWWRFGT  248 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG-~v~-~~~~~~~~~~~  248 (292)
                      |..+..+.                 .+.+...|++||++++.+++++++++.++||+||+|+|| ++. ++.++..... 
T Consensus       149 s~~~~~~~-----------------~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~~~~~~~~-  210 (273)
T PRK08278        149 PPLNLDPK-----------------WFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAAVRNLLGGD-  210 (273)
T ss_pred             Cchhcccc-----------------ccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHHHHhccccc-
Confidence            87544321                 012567899999999999999999999999999999999 577 6655432210 


Q ss_pred             ccchhhhhhccccccCCHHHhhc------ccccCCCCCccccCCcc
Q psy4251         249 PVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPDSEWMW  288 (292)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~~~~~w  288 (292)
                        .       ......+|++.|+      .+.....+|+++.+..|
T Consensus       211 --~-------~~~~~~~p~~va~~~~~l~~~~~~~~~G~~~~~~~~  247 (273)
T PRK08278        211 --E-------AMRRSRTPEIMADAAYEILSRPAREFTGNFLIDEEV  247 (273)
T ss_pred             --c-------cccccCCHHHHHHHHHHHhcCccccceeEEEeccch
Confidence              0       1112468888887      34445678887765444

>KOG1611|consensus

Probab=99.97  E-value=7.4e-30  Score=204.95  Aligned_cols=214  Identities=18%  Similarity=0.112  Sum_probs=164.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE---EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY---QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~---~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ++++ ||||+      +|||+.+++++.+  ..+..++   +|+.+++.+..+.....  ..+++.+++|+++.++++++
T Consensus         4 ksv~-ItGaN------RGIGlgLVk~llk--~~~i~~iiat~r~~e~a~~~l~~k~~~--d~rvHii~Ldvt~deS~~~~   72 (249)
T KOG1611|consen    4 KSVF-ITGAN------RGIGLGLVKELLK--DKGIEVIIATARDPEKAATELALKSKS--DSRVHIIQLDVTCDESIDNF   72 (249)
T ss_pred             ccEE-EeccC------cchhHHHHHHHhc--CCCcEEEEEecCChHHhhHHHHHhhcc--CCceEEEEEecccHHHHHHH
Confidence            4566 99999      9999999555442  2355544   38888863322222222  46999999999999999999


Q ss_pred             HHHHHHhC--CCccEEEEcccccCC---CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC---------CCcEEEE
Q psy4251         103 AEEYQKKF--RSLNILVLNAGVFGL---GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK---------LFARVVV  168 (292)
Q Consensus       103 ~~~~~~~~--~~id~lI~nAg~~~~---~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~---------~~~~iV~  168 (292)
                      ++++.+-.  ..+|+||+|||+..+   ..+...+-|.+++++|.+|+.+++|+++|+|++...         ..+.||+
T Consensus        73 ~~~V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIin  152 (249)
T KOG1611|consen   73 VQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIIN  152 (249)
T ss_pred             HHHHHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEE
Confidence            99999874  479999999999743   334456679999999999999999999999987643         1358999


Q ss_pred             EcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC
Q psy4251         169 VSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG  247 (292)
Q Consensus       169 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~  247 (292)
                      +||..+-++.                ..-.++.+|..||+|+.+|+++++.++.+.+|-|.++|||||+ +|......  
T Consensus       153 isS~~~s~~~----------------~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg~~a~--  214 (249)
T KOG1611|consen  153 ISSSAGSIGG----------------FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGGKKAA--  214 (249)
T ss_pred             eeccccccCC----------------CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCCCCcc--
Confidence            9998666443                1112678999999999999999999999999999999999999 99875432  


Q ss_pred             CccchhhhhhccccccCCHHHhhc------ccccCCCCCcccc
Q psy4251         248 TPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPDS  284 (292)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~~  284 (292)
                                      .++||.+.      .......+|.||.
T Consensus       215 ----------------ltveeSts~l~~~i~kL~~~hnG~ffn  241 (249)
T KOG1611|consen  215 ----------------LTVEESTSKLLASINKLKNEHNGGFFN  241 (249)
T ss_pred             ----------------cchhhhHHHHHHHHHhcCcccCcceEc
Confidence                            26666665      4455666788874

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.97  E-value=1.4e-29  Score=217.02  Aligned_cols=226  Identities=16%  Similarity=0.164  Sum_probs=179.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.++.++..+++.+.  +.++.++++|++|.++
T Consensus         6 ~~~~~k~vl-ItGa~------g~iG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~   73 (255)
T PRK07523          6 FDLTGRRAL-VTGSS------QGIGYAL---AEGLAQAGAEVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDA   73 (255)
T ss_pred             cCCCCCEEE-EECCc------chHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHH
Confidence            357899999 99999      9999999   5556677777764  8888888888888654  4578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||...  +..+.+.++|++++++|+.+++.+++++.+.|.++..  ++||++||..+..
T Consensus        74 ~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g~iv~iss~~~~~  151 (255)
T PRK07523         74 VRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGA--GKIINIASVQSAL  151 (255)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--eEEEEEccchhcc
Confidence            99999999999999999999999863  4566788899999999999999999999999987766  8999999986655


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|+++|++++.++++++.++.++||+||+|+||+++ ++.+.....   .....+
T Consensus       152 ~~------------~-------~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~---~~~~~~  209 (255)
T PRK07523        152 AR------------P-------GIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVAD---PEFSAW  209 (255)
T ss_pred             CC------------C-------CCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccC---HHHHHH
Confidence            43            2       567899999999999999999999999999999999999 876543211   111122


Q ss_pred             hhc--cccccCCHHHhhc------ccccCCCCCcc
Q psy4251         256 ISR--VRPVTNFQVDLTG------TAEKVGLSGLP  282 (292)
Q Consensus       256 ~~~--~~~~~~~~~~~a~------~~~~~~~~G~~  282 (292)
                      +..  ....+..+++.|.      .+.....+|+.
T Consensus       210 ~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~  244 (255)
T PRK07523        210 LEKRTPAGRWGKVEELVGACVFLASDASSFVNGHV  244 (255)
T ss_pred             HHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCcE
Confidence            211  1123457888776      33444556654

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.6e-29  Score=224.75  Aligned_cols=189  Identities=14%  Similarity=0.083  Sum_probs=165.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..+++|+++ ||||+      +|||+++   +..|+++|+.|+  .|+.+++++..+++.+.  +.++.++++|++|.++
T Consensus         4 ~~l~~k~vl-ITGas------~gIG~~l---a~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~--g~~~~~v~~Dv~d~~~   71 (334)
T PRK07109          4 KPIGRQVVV-ITGAS------AGVGRAT---ARAFARRGAKVVLLARGEEGLEALAAEIRAA--GGEALAVVADVADAEA   71 (334)
T ss_pred             CCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEecCCCHHH
Confidence            457789998 99999      9999999   555667777765  49999999888888765  5688999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|++|||||..  .+..+.+.+++++.+++|+.+++.+++.++|.|.+++.  ++||++||..+..
T Consensus        72 v~~~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~--g~iV~isS~~~~~  149 (334)
T PRK07109         72 VQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDR--GAIIQVGSALAYR  149 (334)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEeCChhhcc
Confidence            9999999999999999999999975  35667889999999999999999999999999988766  9999999998776


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC--CCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK--YKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       ....|+++|+++..|+++++.|+..  .+|++++|+||.++ ++..+
T Consensus       150 ~~------------~-------~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~  199 (334)
T PRK07109        150 SI------------P-------LQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDW  199 (334)
T ss_pred             CC------------C-------cchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhh
Confidence            54            2       5678999999999999999999864  47999999999999 87654

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.97  E-value=1.8e-29  Score=217.43  Aligned_cols=182  Identities=16%  Similarity=0.149  Sum_probs=153.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .++||+++ ||||+      +|||+++   +..|++.|+.|+  .|+.+++++..+++     +.++.++++|+++.+++
T Consensus         3 ~~~~k~vl-VtGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~   67 (263)
T PRK06200          3 WLHGQVAL-ITGGG------SGIGRAL---VERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADN   67 (263)
T ss_pred             CCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHH
Confidence            36789998 99999      9999999   555667787776  48877776665544     34688899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcc----hhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDG----FETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~----~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +++++++.++++++|+||||||+..   +..+.+.++    |++++++|+.+++.+++.++|.|.++ .  ++||+++|.
T Consensus        68 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~--g~iv~~sS~  144 (263)
T PRK06200         68 QRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKAS-G--GSMIFTLSN  144 (263)
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhc-C--CEEEEECCh
Confidence            9999999999999999999999853   333445544    88999999999999999999998765 3  899999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      ++..+.            +       +...|++||+++..|++++++++.+ +|+||+|+||+|+ ++..
T Consensus       145 ~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~el~~-~Irvn~i~PG~i~t~~~~  194 (263)
T PRK06200        145 SSFYPG------------G-------GGPLYTASKHAVVGLVRQLAYELAP-KIRVNGVAPGGTVTDLRG  194 (263)
T ss_pred             hhcCCC------------C-------CCchhHHHHHHHHHHHHHHHHHHhc-CcEEEEEeCCccccCCcC
Confidence            877654            2       5678999999999999999999987 4999999999999 8764

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.97  E-value=1.9e-29  Score=217.05  Aligned_cols=228  Identities=16%  Similarity=0.163  Sum_probs=176.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-CHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-CWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ ||||+      +|||+++   +..|++.|+.|+.  | +.+..++..+++...  +.++.++++|++|.+
T Consensus         3 ~~~~~k~~l-ItGa~------~gIG~~i---a~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~   70 (261)
T PRK08936          3 SDLEGKVVV-ITGGS------TGLGRAM---AVRFGKEKAKVVINYRSDEEEANDVAEEIKKA--GGEAIAVKGDVTVES   70 (261)
T ss_pred             cCCCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEecCCCHH
Confidence            457899999 99999      9999999   5556677776653  5 456677777777654  567889999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~  174 (292)
                      ++.++++++.+.++++|++|||||...  +..+.+.++|++++++|+.+++.+++.++|.|.++. .  ++||++||..+
T Consensus        71 ~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~--g~iv~~sS~~~  148 (261)
T PRK08936         71 DVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIK--GNIINMSSVHE  148 (261)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--cEEEEEccccc
Confidence            999999999999999999999999864  345667889999999999999999999999998754 4  89999999866


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC-ccch
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT-PVRT  252 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~-~~~~  252 (292)
                      ..+.            +       +...|+++|+++..++++++.++.+.||+|++|+||+|+ ++.+....... ...+
T Consensus       149 ~~~~------------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~  209 (261)
T PRK08936        149 QIPW------------P-------LFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADV  209 (261)
T ss_pred             cCCC------------C-------CCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHH
Confidence            5443            2       567899999999999999999999999999999999999 87653211100 0011


Q ss_pred             hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....  ....+.++++.++      .......+|..+
T Consensus       210 ~~~~--~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i  244 (261)
T PRK08936        210 ESMI--PMGYIGKPEEIAAVAAWLASSEASYVTGITL  244 (261)
T ss_pred             HhcC--CCCCCcCHHHHHHHHHHHcCcccCCccCcEE
Confidence            1111  1223567888876      334456677643

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.97  E-value=3e-29  Score=215.11  Aligned_cols=235  Identities=12%  Similarity=0.085  Sum_probs=184.8

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +..++++|+.|+  .|+.+.+++..+++++.  +.++.+++||+++.+
T Consensus         6 ~~~~~~k~il-ItGas------~~IG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~   73 (256)
T PRK06124          6 RFSLAGQVAL-VTGSA------RGLGFEI---ARALAGAGAHVLVNGRNAATLEAAVAALRAA--GGAAEALAFDIADEE   73 (256)
T ss_pred             ccCCCCCEEE-EECCC------chHHHHH---HHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHH
Confidence            5668999999 99999      9999999   445556777766  48888888888888654  457889999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++.++++++...++++|++|||||...  +..+.+.++|++.+++|+.+++.+++.+++.|.+++.  ++||++||..+.
T Consensus        74 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~ss~~~~  151 (256)
T PRK06124         74 AVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGY--GRIIAITSIAGQ  151 (256)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEEeechhc
Confidence            999999999999999999999999863  4566788899999999999999999999999987776  999999998776


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|+++|+++..++++++.++.+.||++++|+||.++ ++.+.....   ..+..
T Consensus       152 ~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~---~~~~~  209 (256)
T PRK06124        152 VAR------------A-------GDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAAD---PAVGP  209 (256)
T ss_pred             cCC------------C-------CccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccC---hHHHH
Confidence            554            2       567899999999999999999999889999999999999 775443111   11111


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc-cCCcccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWHY  290 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~~  290 (292)
                      .+..  ....+.++++.+.      .+.....+|+++ .+.-|..
T Consensus       210 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~dgg~~~  254 (256)
T PRK06124        210 WLAQRTPLGRWGRPEEIAGAAVFLASPAASYVNGHVLAVDGGYSV  254 (256)
T ss_pred             HHHhcCCCCCCCCHHHHHHHHHHHcCcccCCcCCCEEEECCCccc
Confidence            1110  1122467888776      444556778865 3444433

>PRK06484 short chain dehydrogenase; Validated

Probab=99.97  E-value=1.2e-29  Score=238.78  Aligned_cols=222  Identities=13%  Similarity=0.125  Sum_probs=175.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .+.||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++     +.++..+++|++|++++
T Consensus       266 ~~~~k~~l-ItGas------~gIG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~  330 (520)
T PRK06484        266 AESPRVVA-ITGGA------RGIGRAV---ADRFAAAGDRLLIIDRDAEGAKKLAEAL-----GDEHLSVQADITDEAAV  330 (520)
T ss_pred             ccCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEccCCCHHHH
Confidence            45789999 99999      9999999   666777887776  48887777766554     34677899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++.+++++||+||||||+..   +..+.+.++|++++++|+.++++++++++|.|.  ..  ++||++||.++..
T Consensus       331 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~--g~iv~isS~~~~~  406 (520)
T PRK06484        331 ESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMS--QG--GVIVNLGSIASLL  406 (520)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhc--cC--CEEEEECchhhcC
Confidence            9999999999999999999999852   456778899999999999999999999999993  34  8999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC--ccchh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT--PVRTF  253 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~--~~~~~  253 (292)
                      +.            +       +...|+++|++++.|+++++.++.++||+||+|+||+|+ ++.+.......  ...+.
T Consensus       407 ~~------------~-------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~  467 (520)
T PRK06484        407 AL------------P-------PRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIR  467 (520)
T ss_pred             CC------------C-------CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHH
Confidence            54            2       677999999999999999999999999999999999999 87654321100  00111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ....+.+|++.|.      .+.....+|+.+
T Consensus       468 ~~~--~~~~~~~~~dia~~~~~l~s~~~~~~~G~~i  501 (520)
T PRK06484        468 RRI--PLGRLGDPEEVAEAIAFLASPAASYVNGATL  501 (520)
T ss_pred             hcC--CCCCCcCHHHHHHHHHHHhCccccCccCcEE
Confidence            111  1123468888886      334455677654

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.97  E-value=2.2e-29  Score=217.98  Aligned_cols=185  Identities=15%  Similarity=0.109  Sum_probs=160.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++|++++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.      ++.++++|++|++++
T Consensus         2 ~~~~~~il-VtGas------ggiG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~   65 (273)
T PRK07825          2 DLRGKVVA-ITGGA------RGIGLAT---ARALAALGARVAIGDLDEALAKETAAELG------LVVGGPLDVTDPASF   65 (273)
T ss_pred             CCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHhc------cceEEEccCCCHHHH
Confidence            46788988 99999      9999999   555667777765  488888777665542      577899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++++.+.++++|++|||||+..  +..+.+.+.+++++++|+.+++.+++.++|.|.+++.  ++||++||..+..+
T Consensus        66 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~  143 (273)
T PRK07825         66 AAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGR--GHVVNVASLAGKIP  143 (273)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CEEEEEcCccccCC
Confidence            9999999999999999999999863  4556678889999999999999999999999988777  89999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .            +       +...|++||+++..|+++++.++.++||++++|+||++. ++....
T Consensus       144 ~------------~-------~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~~  191 (273)
T PRK07825        144 V------------P-------GMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAGT  191 (273)
T ss_pred             C------------C-------CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhccc
Confidence            4            2       677899999999999999999999999999999999999 876543

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.97  E-value=3.3e-29  Score=214.47  Aligned_cols=223  Identities=16%  Similarity=0.160  Sum_probs=172.3

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ||+++ ||||+      +|||+++   +..+++.|..|++  |+.+++++..+++.+.  +.++.++++|++|+++++++
T Consensus         1 ~k~~l-ItG~s------~giG~~i---a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~   68 (252)
T PRK07677          1 EKVVI-ITGGS------SGMGKAM---AKRFAEEGANVVITGRTKEKLEEAKLEIEQF--PGQVLTVQMDVRNPEDVQKM   68 (252)
T ss_pred             CCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHH
Confidence            57888 99999      9999999   5556677877764  8888888887777654  45789999999999999999


Q ss_pred             HHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccccC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++++.+.++++|++|||||..  .+..+.+.++|++++++|+.++++++++++|.|.+.. .  ++||++||..+..+. 
T Consensus        69 ~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--g~ii~isS~~~~~~~-  145 (252)
T PRK07677         69 VEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIK--GNIINMVATYAWDAG-  145 (252)
T ss_pred             HHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCC--EEEEEEcChhhccCC-
Confidence            999999999999999999964  3456778899999999999999999999999986543 4  899999998766543 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC-CCeEEEEecCCccc-ccc-ccccccCCccchhhhh
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK-YKIALSSRHCCWKI-TVS-KKWWRFGTPVRTFSWI  256 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~gi~v~~v~PG~v~-~~~-~~~~~~~~~~~~~~~~  256 (292)
                                 +       ....|++||+++.+|+++++.++.+ +||+||+|+||+++ +.. ......   ......+
T Consensus       146 -----------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~---~~~~~~~  204 (252)
T PRK07677        146 -----------P-------GVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWES---EEAAKRT  204 (252)
T ss_pred             -----------C-------CCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCC---HHHHHHH
Confidence                       2       5568999999999999999999964 69999999999998 432 221110   1111111


Q ss_pred             hc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+  ....+.++++.++      .+.....+|+.+
T Consensus       205 ~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~  239 (252)
T PRK07677        205 IQSVPLGRLGTPEEIAGLAYFLLSDEAAYINGTCI  239 (252)
T ss_pred             hccCCCCCCCCHHHHHHHHHHHcCccccccCCCEE
Confidence            01  1123567888876      344456777654

>PRK12743 oxidoreductase; Provisional

Probab=99.97  E-value=3.2e-29  Score=215.07  Aligned_cols=185  Identities=16%  Similarity=0.139  Sum_probs=159.1

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +|+++ ||||+      +|||+++   +..+++.|+.|+.   ++.+.+++..+++...  +.++.++++|+++.+++++
T Consensus         2 ~k~vl-ItGas------~giG~~~---a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~   69 (256)
T PRK12743          2 AQVAI-VTASD------SGIGKAC---ALLLAQQGFDIGITWHSDEEGAKETAEEVRSH--GVRAEIRQLDLSDLPEGAQ   69 (256)
T ss_pred             CCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHH
Confidence            67888 99999      9999999   5556678887753   4667777777777655  5689999999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSY  178 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~  178 (292)
                      +++++.++++++|+||||||...  +..+.+.+++++.+++|+.+++.+++++.++|.+++ .  ++||++||..+..+.
T Consensus        70 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~--g~ii~isS~~~~~~~  147 (256)
T PRK12743         70 ALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQG--GRIINITSVHEHTPL  147 (256)
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--eEEEEEeeccccCCC
Confidence            99999999999999999999864  345678889999999999999999999999996543 4  899999998765543


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                  +       +...|+++|+++.+++++++.++.++||++|+|+||.++ ++.+.
T Consensus       148 ------------~-------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~  193 (256)
T PRK12743        148 ------------P-------GASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGM  193 (256)
T ss_pred             ------------C-------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccc
Confidence                        2       677999999999999999999999999999999999999 87654

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.97  E-value=5.1e-29  Score=219.20  Aligned_cols=189  Identities=19%  Similarity=0.245  Sum_probs=159.5

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-CHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-CWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|++  + +.+..++..+++++.  +.++.++++|++|.
T Consensus         7 ~~~l~~k~~l-VTGas------~gIG~~i---a~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~   74 (306)
T PRK07792          7 TTDLSGKVAV-VTGAA------AGLGRAE---ALGLARLGATVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQR   74 (306)
T ss_pred             CcCCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCH
Confidence            3678999999 99999      9999999   6667778877764  3 456677888888765  56899999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-----CCCcEEEEE
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-----KLFARVVVV  169 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-----~~~~~iV~v  169 (292)
                      +++.++++++.+ ++++|+||||||+..  .+.+.+.++|+..+++|+.+++.+++++.|+|.++.     ...|+||++
T Consensus        75 ~~~~~~~~~~~~-~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~i  153 (306)
T PRK07792         75 ATADELVATAVG-LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNT  153 (306)
T ss_pred             HHHHHHHHHHHH-hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEE
Confidence            999999999998 899999999999864  345678889999999999999999999999986431     012799999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      ||.++..+.            +       +...|+++|+++..|+++++.++.++||+||+|+||. . +|..
T Consensus       154 sS~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~~~~  206 (306)
T PRK07792        154 SSEAGLVGP------------V-------GQANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTAMTA  206 (306)
T ss_pred             CCcccccCC------------C-------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCchhh
Confidence            998776554            2       5678999999999999999999999999999999994 6 6654

>PLN02253 xanthoxin dehydrogenase

Probab=99.97  E-value=2.4e-29  Score=218.63  Aligned_cols=190  Identities=18%  Similarity=0.126  Sum_probs=161.1

Q ss_pred             CCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          18 HPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        18 ~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      .|..+++||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.+..++..+++..   +.++.++++|++|
T Consensus        11 ~~~~~l~~k~~l-ItGas------~gIG~~l---a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d   77 (280)
T PLN02253         11 LPSQRLLGKVAL-VTGGA------TGIGESI---VRLFHKHGAKVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTV   77 (280)
T ss_pred             ccccccCCCEEE-EECCC------chHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCC
Confidence            345678899999 99999      9999999   5556677877764  677666666665521   3578999999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      .++++++++++.++++++|+||||||...    +..+.+.++++.++++|+.++++++++++|.|.+...  ++||+++|
T Consensus        78 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~ii~isS  155 (280)
T PLN02253         78 EDDVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKK--GSIVSLCS  155 (280)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC--ceEEEecC
Confidence            99999999999999999999999999863    2456778899999999999999999999999976666  89999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      ..+..+.            +       +...|++||++++.+++++++++...||+||+++||.+. ++..
T Consensus       156 ~~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~  207 (280)
T PLN02253        156 VASAIGG------------L-------GPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALAL  207 (280)
T ss_pred             hhhcccC------------C-------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccc
Confidence            8876543            2       456899999999999999999999999999999999999 7654

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.97  E-value=3.6e-29  Score=215.08  Aligned_cols=226  Identities=12%  Similarity=0.028  Sum_probs=174.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ |||++      +|||+++   +..+++.|+.|+  .|+.+++++..+++.+.. +.++.++++|+++++++
T Consensus         4 ~~~~k~vl-ItG~~------~giG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~   72 (259)
T PRK06125          4 HLAGKRVL-ITGAS------KGIGAAA---AEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAR   72 (259)
T ss_pred             CCCCCEEE-EeCCC------chHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHH
Confidence            47899999 99999      9999999   555666777765  488888888888886543 45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++.    ++++|++|||||...  ++.+.+.++|+.++++|+.++++++++++|.|.++..  ++||++||..+..+
T Consensus        73 ~~~~~~----~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~iv~iss~~~~~~  146 (259)
T PRK06125         73 EQLAAE----AGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGS--GVIVNVIGAAGENP  146 (259)
T ss_pred             HHHHHH----hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--cEEEEecCccccCC
Confidence            888764    478999999999863  4667889999999999999999999999999987766  89999999876554


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc------CCcc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF------GTPV  250 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~------~~~~  250 (292)
                      .            +       ....|+++|+++..++++++.++.++||+||+|+||+++ ++.......      ..+.
T Consensus       147 ~------------~-------~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~  207 (259)
T PRK06125        147 D------------A-------DYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDES  207 (259)
T ss_pred             C------------C-------CchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHH
Confidence            3            2       566899999999999999999999999999999999999 764432100      0010


Q ss_pred             chhhhhhc-cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISR-VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~-~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+-..... ....+.+|++.|.      .+.....+|..+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i  247 (259)
T PRK06125        208 RWQELLAGLPLGRPATPEEVADLVAFLASPRSGYTSGTVV  247 (259)
T ss_pred             HHHHHhccCCcCCCcCHHHHHHHHHHHcCchhccccCceE
Confidence            01011100 1123468888887      444556778765

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=2.9e-30  Score=225.13  Aligned_cols=227  Identities=10%  Similarity=0.015  Sum_probs=159.1

Q ss_pred             CCCCCceEEEEcCC--CCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-HHHHHHHHHHHHh--------hCCCC-----
Q psy4251          21 STYNGCLAILCTGD--MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-WDKANDAISKILT--------EKPSA-----   84 (292)
Q Consensus        21 ~~l~g~~~vlItGa--~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-~~~~~~~~~~l~~--------~~~~~-----   84 (292)
                      .+++||+++ |||+  +      +|||+++   +..|+++|+.|++.+ .+.++...+....        ...+.     
T Consensus         4 ~~~~gk~al-ITGa~~~------~GIG~a~---A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (299)
T PRK06300          4 IDLTGKIAF-IAGIGDD------QGYGWGI---AKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFA   73 (299)
T ss_pred             cCCCCCEEE-EeCCCCC------CCHHHHH---HHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhh
Confidence            578899999 9999  6      8999999   777889999888622 1111111111000        00011     


Q ss_pred             ceEEEEccCCCh------------------HHHHHHHHHHHHhCCCccEEEEccccc----CCCCCCCCcchhhhhhhhh
Q psy4251          85 QCIAMELDLCRL------------------KSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNH  142 (292)
Q Consensus        85 ~~~~~~~Dls~~------------------~~v~~~~~~~~~~~~~id~lI~nAg~~----~~~~~~~~~~~~~~~~vN~  142 (292)
                      ++..+.+|+++.                  ++++++++++.++++++|+||||||..    .++.+.+.++|++.+++|+
T Consensus        74 ~~~~~~~d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl  153 (299)
T PRK06300         74 KIYPMDASFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSS  153 (299)
T ss_pred             hHHHhhhhcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHh
Confidence            111223444443                  368999999999999999999999864    3567889999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhh-hHHHHhHHHHHHHHHHHHhHh
Q psy4251         143 LAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAM-TAYNDTKLCNVLFGEKLATLW  221 (292)
Q Consensus       143 ~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~la~~~  221 (292)
                      .|+++++++++|+|.+  .  |+||+++|..+..+.            +       .. ..|++||+++..|+++++.|+
T Consensus       154 ~g~~~l~~a~~p~m~~--~--G~ii~iss~~~~~~~------------p-------~~~~~Y~asKaAl~~lt~~la~el  210 (299)
T PRK06300        154 YSFVSLLSHFGPIMNP--G--GSTISLTYLASMRAV------------P-------GYGGGMSSAKAALESDTKVLAWEA  210 (299)
T ss_pred             HHHHHHHHHHHHHhhc--C--CeEEEEeehhhcCcC------------C-------CccHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999974  3  899999998776543            1       33 379999999999999999999


Q ss_pred             cC-CCeEEEEecCCccc-cccccccccCCccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         222 YK-YKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       222 ~~-~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+ +||+||+|+||+++ ++.+....   +.........  ......+|++.+.      ++.....+|+.+
T Consensus       211 ~~~~gIrVn~V~PG~v~T~~~~~~~~---~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i  279 (299)
T PRK06300        211 GRRWGIRVNTISAGPLASRAGKAIGF---IERMVDYYQDWAPLPEPMEAEQVGAAAAFLVSPLASAITGETL  279 (299)
T ss_pred             CCCCCeEEEEEEeCCccChhhhcccc---cHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEE
Confidence            86 59999999999999 87643211   0011111100  1122457888776      444456677644

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.97  E-value=5.1e-29  Score=213.52  Aligned_cols=225  Identities=17%  Similarity=0.202  Sum_probs=173.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||.++   +..|+++|+.|+.  |+.+. .+..+++.    +.++.++++|++++++
T Consensus        11 ~~~~~k~vl-ItGas------~~IG~~l---a~~l~~~G~~Vi~~~r~~~~-~~~~~~~~----~~~~~~~~~Dl~~~~~   75 (255)
T PRK06841         11 FDLSGKVAV-VTGGA------SGIGHAI---AELFAAKGARVALLDRSEDV-AEVAAQLL----GGNAKGLVCDVSDSQS   75 (255)
T ss_pred             cCCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHH-HHHHHHhh----CCceEEEEecCCCHHH
Confidence            467899999 99999      9999999   5556677777764  66543 23333332    3467789999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.+.++++|++|||||...  +..+.+.++++.++++|+.+++.+++.++|.|.++..  ++||++||..+..
T Consensus        76 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~  153 (255)
T PRK06841         76 VEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGG--GKIVNLASQAGVV  153 (255)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCC--ceEEEEcchhhcc
Confidence            99999999999999999999999863  3456678899999999999999999999999987766  8999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       ....|+++|+++..++++++.++.++||+||+|+||+|+ ++.+..+.......+...
T Consensus       154 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~  214 (255)
T PRK06841        154 AL------------E-------RHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEKGERAKKL  214 (255)
T ss_pred             CC------------C-------CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhHHHHHHhc
Confidence            54            2       567899999999999999999999889999999999999 876543221010111111


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .  ....+.++++.+.      .......+|+.+
T Consensus       215 ~--~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i  246 (255)
T PRK06841        215 I--PAGRFAYPEEIAAAALFLASDAAAMITGENL  246 (255)
T ss_pred             C--CCCCCcCHHHHHHHHHHHcCccccCccCCEE
Confidence            1  1223568888887      344555677754

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.97  E-value=7.7e-29  Score=211.68  Aligned_cols=188  Identities=16%  Similarity=0.169  Sum_probs=161.8

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE---EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY---QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~---~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +.|++++ ||||+      +|||+++   +..|.+.|+.|+   .|+.++.++..+++++.  +.++.++++|++|++++
T Consensus         2 ~~~~~vl-ItGa~------g~iG~~~---a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~   69 (250)
T PRK08063          2 FSGKVAL-VTGSS------RGIGKAI---ALRLAEEGYDIAVNYARSRKAAEETAEEIEAL--GRKALAVKANVGDVEKI   69 (250)
T ss_pred             CCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHH
Confidence            4578888 99999      9999999   555667777654   47888888888888665  56889999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++++.+.++++|+||||||..  .+..+.+.++++.++++|+.+++.++++++|.+.+++.  ++||++||..+..+
T Consensus        70 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~iv~~sS~~~~~~  147 (250)
T PRK08063         70 KEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGG--GKIISLSSLGSIRY  147 (250)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--eEEEEEcchhhccC
Confidence            999999999999999999999975  35567788889999999999999999999999987766  89999999866544


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .            +       +...|+++|++++.|+++++.++.+.||++++|+||++. ++....
T Consensus       148 ~------------~-------~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~  195 (250)
T PRK08063        148 L------------E-------NYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHF  195 (250)
T ss_pred             C------------C-------CccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhc
Confidence            3            2       567899999999999999999998889999999999999 776543

>PRK06398 aldose dehydrogenase; Validated

Probab=99.97  E-value=1.7e-29  Score=216.97  Aligned_cols=177  Identities=18%  Similarity=0.102  Sum_probs=153.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +..+++.|+.|+.  |+.+.             ..++.+++||++|+++
T Consensus         2 ~~l~gk~vl-ItGas------~gIG~~i---a~~l~~~G~~Vi~~~r~~~~-------------~~~~~~~~~D~~~~~~   58 (258)
T PRK06398          2 LGLKDKVAI-VTGGS------QGIGKAV---VNRLKEEGSNVINFDIKEPS-------------YNDVDYFKVDVSNKEQ   58 (258)
T ss_pred             CCCCCCEEE-EECCC------chHHHHH---HHHHHHCCCeEEEEeCCccc-------------cCceEEEEccCCCHHH
Confidence            357899999 99999      9999999   5567778887774  54321             1267889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||..  .+..+.+.++|++.+++|+.+++.++++++|+|.+++.  ++||++||..+..
T Consensus        59 i~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g~iv~isS~~~~~  136 (258)
T PRK06398         59 VIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDK--GVIINIASVQSFA  136 (258)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--eEEEEeCcchhcc
Confidence            9999999999999999999999985  34567788999999999999999999999999987766  9999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       +...|++||++++.++++++.|+.+. |+||+|+||+++ ++...
T Consensus       137 ~~------------~-------~~~~Y~~sKaal~~~~~~la~e~~~~-i~vn~i~PG~v~T~~~~~  183 (258)
T PRK06398        137 VT------------R-------NAAAYVTSKHAVLGLTRSIAVDYAPT-IRCVAVCPGSIRTPLLEW  183 (258)
T ss_pred             CC------------C-------CCchhhhhHHHHHHHHHHHHHHhCCC-CEEEEEecCCccchHHhh
Confidence            54            2       67789999999999999999999875 999999999999 87654

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.97  E-value=4.4e-29  Score=214.56  Aligned_cols=184  Identities=13%  Similarity=0.112  Sum_probs=156.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..+++|+++ ||||+      +|||+++   +.+|+++|+.|+.  |+. ..++..+++...  +.++.++++|+++.++
T Consensus         4 ~~~~~k~vl-VtGas------~gIG~~l---a~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   70 (260)
T PRK12823          4 QRFAGKVVV-VTGAA------QGIGRGV---ALRAAAEGARVVLVDRSE-LVHEVAAELRAA--GGEALALTADLETYAG   70 (260)
T ss_pred             cccCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCch-HHHHHHHHHHhc--CCeEEEEEEeCCCHHH
Confidence            457899999 99999      9999999   6667778877764  664 345556666544  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +.++++++.++++++|+||||||..   .+..+.+.++++..+++|+.+++.+++.++|.|.+++.  ++||++||..+.
T Consensus        71 ~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~iv~~sS~~~~  148 (260)
T PRK12823         71 AQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGG--GAIVNVSSIATR  148 (260)
T ss_pred             HHHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CeEEEEcCcccc
Confidence            9999999999999999999999964   35567788999999999999999999999999987766  899999998654


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      . .                    ....|++||++++.|+++++.++.++||+||+|+||+|. ++.
T Consensus       149 ~-~--------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~  193 (260)
T PRK12823        149 G-I--------------------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPR  193 (260)
T ss_pred             C-C--------------------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcch
Confidence            2 1                    345799999999999999999999999999999999999 763

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.97  E-value=6e-29  Score=212.67  Aligned_cols=222  Identities=13%  Similarity=0.073  Sum_probs=168.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++++|+++ ||||+      +|||+++   +..|.+.|+.|+.   |+.++.++..+++     +.++.++++|+++.++
T Consensus         2 ~l~~k~il-ItGas------~gIG~~l---a~~l~~~G~~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~   66 (253)
T PRK08642          2 QISEQTVL-VTGGS------RGLGAAI---ARAFAREGARVVVNYHQSEDAAEALADEL-----GDRAIALQADVTDREQ   66 (253)
T ss_pred             CCCCCEEE-EeCCC------CcHHHHH---HHHHHHCCCeEEEEcCCCHHHHHHHHHHh-----CCceEEEEcCCCCHHH
Confidence            46788999 99999      9999999   5557778877753   3455554444333     2478899999999999


Q ss_pred             HHHHHHHHHHhCCC-ccEEEEcccccC--------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy4251          99 VKKFAEEYQKKFRS-LNILVLNAGVFG--------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV  169 (292)
Q Consensus        99 v~~~~~~~~~~~~~-id~lI~nAg~~~--------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v  169 (292)
                      +.++++++.+.+++ +|++|||||...        +..+.+.+++++.+++|+.+++.+++.++|.|.+...  ++||++
T Consensus        67 ~~~~~~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g~iv~i  144 (253)
T PRK08642         67 VQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGF--GRIINI  144 (253)
T ss_pred             HHHHHHHHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC--eEEEEE
Confidence            99999999988887 999999998741        2455677889999999999999999999999977666  899999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT  248 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~  248 (292)
                      +|..+..+.            .       +...|+++|++++.+++++++++.+.||+||+|+||+++ +........  
T Consensus       145 ss~~~~~~~------------~-------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~--  203 (253)
T PRK08642        145 GTNLFQNPV------------V-------PYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPD--  203 (253)
T ss_pred             CCccccCCC------------C-------CccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCH--
Confidence            997554332            1       456899999999999999999999999999999999999 654332111  


Q ss_pred             ccchhhhhhccc--cccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 PVRTFSWISRVR--PVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~~~~~~~~~~~~--~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        .......+..  .-..+|++.|.      .+.....+|..+
T Consensus       204 --~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~  244 (253)
T PRK08642        204 --EVFDLIAATTPLRKVTTPQEFADAVLFFASPWARAVTGQNL  244 (253)
T ss_pred             --HHHHHHHhcCCcCCCCCHHHHHHHHHHHcCchhcCccCCEE
Confidence              1111111111  23568888877      344456677644

>PRK05717 oxidoreductase; Validated

Probab=99.97  E-value=7.2e-29  Score=212.70  Aligned_cols=185  Identities=18%  Similarity=0.130  Sum_probs=155.6

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      |..+++||+++ ||||+      +|||+++   +..|+++|..|+.  |+.++.++..+++     +.++.++++|+++.
T Consensus         4 ~~~~~~~k~vl-ItG~s------g~IG~~~---a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~   68 (255)
T PRK05717          4 PNPGHNGRVAL-VTGAA------RGIGLGI---AAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADE   68 (255)
T ss_pred             CCcccCCCEEE-EeCCc------chHHHHH---HHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCH
Confidence            56788999999 99999      9999999   5556677777664  6766665554433     34688999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +++.++++++.++++++|++|||||...    +..+.+.++|+..+++|+.+++.++++++|.|.+. .  ++||++||.
T Consensus        69 ~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~--g~ii~~sS~  145 (255)
T PRK05717         69 AQVAAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAH-N--GAIVNLAST  145 (255)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-C--cEEEEEcch
Confidence            9999999999999999999999999863    23456788999999999999999999999999764 3  899999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      .+..+.            +       ....|+++|++++.+++++++++.. +|+|++++||++. ++..
T Consensus       146 ~~~~~~------------~-------~~~~Y~~sKaa~~~~~~~la~~~~~-~i~v~~i~Pg~i~t~~~~  195 (255)
T PRK05717        146 RARQSE------------P-------DTEAYAASKGGLLALTHALAISLGP-EIRVNAVSPGWIDARDPS  195 (255)
T ss_pred             hhcCCC------------C-------CCcchHHHHHHHHHHHHHHHHHhcC-CCEEEEEecccCcCCccc
Confidence            776554            2       4568999999999999999999976 5999999999999 7644

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.97  E-value=1.5e-28  Score=210.79  Aligned_cols=223  Identities=16%  Similarity=0.085  Sum_probs=169.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--cC-----------HHHHHHHHHHHHhhCCCCce
Q psy4251          22 TYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--NC-----------WDKANDAISKILTEKPSAQC   86 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r~-----------~~~~~~~~~~l~~~~~~~~~   86 (292)
                      +++||+++ ||||+      +  |||.++   +..++..|+.|++  |+           ........+++...  +.++
T Consensus         2 ~l~~k~vl-ItGas------~~~giG~~l---a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   69 (256)
T PRK12748          2 PLMKKIAL-VTGAS------RLNGIGAAV---CRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESY--GVRC   69 (256)
T ss_pred             CCCCcEEE-EeCCC------CCCCHHHHH---HHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhc--CCeE
Confidence            46789998 99998      6  899999   5556667766664  54           22222344445433  4579


Q ss_pred             EEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCc
Q psy4251          87 IAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA  164 (292)
Q Consensus        87 ~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~  164 (292)
                      .++++|+++.+++..+++++.++++++|+||||||+..  +..+.+.++++..+++|+.+++.+++++++.|.++..  +
T Consensus        70 ~~~~~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~  147 (256)
T PRK12748         70 EHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAG--G  147 (256)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCC--e
Confidence            99999999999999999999999999999999999863  4556688889999999999999999999999976655  8


Q ss_pred             EEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         165 RVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       165 ~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      +||++||..+..+.            +       +...|+++|++++.+++++++++...||+|++++||.++ ++....
T Consensus       148 ~iv~~ss~~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~~  208 (256)
T PRK12748        148 RIINLTSGQSLGPM------------P-------DELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITEE  208 (256)
T ss_pred             EEEEECCccccCCC------------C-------CchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCChh
Confidence            99999998765543            2       567899999999999999999998889999999999999 765432


Q ss_pred             cccCCccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         244 WRFGTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...    .+....  ......+|++.|+      .+.....+|.++
T Consensus       209 ~~~----~~~~~~--~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~  248 (256)
T PRK12748        209 LKH----HLVPKF--PQGRVGEPVDAARLIAFLVSEEAKWITGQVI  248 (256)
T ss_pred             HHH----hhhccC--CCCCCcCHHHHHHHHHHHhCcccccccCCEE
Confidence            111    111111  1112456777776      444456677765

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.97  E-value=1.2e-28  Score=209.99  Aligned_cols=187  Identities=17%  Similarity=0.147  Sum_probs=159.9

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++|+++ |||++      +|||+++   +..|+++|+.|+.   ++.++.++..+++...  +.++..+++|++|.+++
T Consensus         1 ~~~k~~l-VtG~s------~giG~~~---a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~   68 (246)
T PRK12938          1 MSQRIAY-VTGGM------GGIGTSI---CQRLHKDGFKVVAGCGPNSPRRVKWLEDQKAL--GFDFIASEGNVGDWDST   68 (246)
T ss_pred             CCCCEEE-EECCC------ChHHHHH---HHHHHHcCCEEEEEcCCChHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHH
Confidence            4678888 99999      9999999   5556777877664   4556666666666544  55788899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++++.+.++++|+||||||...  +..+.+.+++++.+++|+.+++.++++++|.+.++..  ++||++||..+..+
T Consensus        69 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~isS~~~~~~  146 (246)
T PRK12938         69 KAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGW--GRIINISSVNGQKG  146 (246)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--eEEEEEechhccCC
Confidence            9999999999999999999999863  3566788899999999999999999999999987766  89999999876654


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .            +       +...|+.+|+++..+++++++++...||++++|+||++. ++.+.
T Consensus       147 ~------------~-------~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~  193 (246)
T PRK12938        147 Q------------F-------GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA  193 (246)
T ss_pred             C------------C-------CChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhh
Confidence            3            2       567899999999999999999999999999999999999 87654

>PRK05855 short chain dehydrogenase; Validated

Probab=99.97  E-value=1e-28  Score=235.20  Aligned_cols=190  Identities=15%  Similarity=0.163  Sum_probs=167.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ...++++++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.++++..  +.++.+++||++|.++
T Consensus       311 ~~~~~~~~l-v~G~s------~giG~~~---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~  378 (582)
T PRK05855        311 GPFSGKLVV-VTGAG------SGIGRET---ALAFAREGAEVVASDIDEAAAERTAELIRAA--GAVAHAYRVDVSDADA  378 (582)
T ss_pred             ccCCCCEEE-EECCc------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHH
Confidence            456778888 99999      9999999   566677787766  48888888888888765  4578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      +.++++++.++++++|+||||||+..  +..+.+.++++.++++|+.|++.++++++|.|.+++ .  |+||++||.++.
T Consensus       379 ~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~--g~iv~~sS~~~~  456 (582)
T PRK05855        379 MEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTG--GHIVNVASAAAY  456 (582)
T ss_pred             HHHHHHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--cEEEEECChhhc
Confidence            99999999999999999999999863  456778899999999999999999999999998764 4  899999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+.            +       +...|++||++++.++++++.++.++||+|++|+||+|+ ++.+..
T Consensus       457 ~~~------------~-------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~  506 (582)
T PRK05855        457 APS------------R-------SLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATT  506 (582)
T ss_pred             cCC------------C-------CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhcc
Confidence            654            2       678999999999999999999999999999999999999 887764

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.97  E-value=2.2e-28  Score=208.73  Aligned_cols=203  Identities=16%  Similarity=0.103  Sum_probs=170.0

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|+++ ||||+      +|||+++++   +|++.|..|+  .|+.++.++..+++.+..++.++.++++|+++.+++.++
T Consensus         2 ~k~vl-ItGas------~giG~~la~---~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~   71 (248)
T PRK08251          2 RQKIL-ITGAS------SGLGAGMAR---EFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEV   71 (248)
T ss_pred             CCEEE-EECCC------CHHHHHHHH---HHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHH
Confidence            57888 99999      999999944   4556676665  588888888888887776677899999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++.++++++|++|||||+..  +..+.+.+.+++++++|+.+++.+++.++|.+++.+.  ++||++||..+..+.. 
T Consensus        72 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~~~~~-  148 (248)
T PRK08251         72 FAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGS--GHLVLISSVSAVRGLP-  148 (248)
T ss_pred             HHHHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCC-
Confidence            9999999999999999999864  3345567788999999999999999999999987766  8999999987765531 


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhcc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRV  259 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                                .       +...|+.||+++..++++++.++...||++++|+||++. ++.+.....             
T Consensus       149 ----------~-------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~-------------  198 (248)
T PRK08251        149 ----------G-------VKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAKAKST-------------  198 (248)
T ss_pred             ----------C-------CcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhccccC-------------
Confidence                      1       356899999999999999999999889999999999999 877654221             


Q ss_pred             ccccCCHHHhhc
Q psy4251         260 RPVTNFQVDLTG  271 (292)
Q Consensus       260 ~~~~~~~~~~a~  271 (292)
                       ++..+++++|+
T Consensus       199 -~~~~~~~~~a~  209 (248)
T PRK08251        199 -PFMVDTETGVK  209 (248)
T ss_pred             -CccCCHHHHHH
Confidence             13457888886

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.2e-28  Score=210.42  Aligned_cols=212  Identities=18%  Similarity=0.139  Sum_probs=167.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||++++++   +++.|+.|+  .|+.+..++..+++...  +.++.++++|+++.+++
T Consensus         3 ~~~~k~vl-ItGas------g~iG~~la~~---l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~   70 (250)
T PRK07774          3 RFDDKVAI-VTGAA------GGIGQAYAEA---LAREGASVVVADINAEGAERVAKQIVAD--GGTAIAVQVDVSDPDSA   70 (250)
T ss_pred             ccCCCEEE-EECCC------chHHHHHHHH---HHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHH
Confidence            46789988 99999      9999999555   556676666  47877777777777654  34678899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC-----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG-----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~-----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +++++++.++++++|+||||||+..     +..+.+.+++++++++|+.+++.++++++|.+.+.+.  ++||++||..+
T Consensus        71 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~  148 (250)
T PRK07774         71 KAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGG--GAIVNQSSTAA  148 (250)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC--cEEEEEecccc
Confidence            9999999999999999999999853     2345677889999999999999999999999987666  89999999865


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..                      +...|++||++++.+++++++++...||+++.++||.++ ++.+............
T Consensus       149 ~~----------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~  206 (250)
T PRK07774        149 WL----------------------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADMV  206 (250)
T ss_pred             cC----------------------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHHH
Confidence            43                      345799999999999999999998889999999999999 7765432211111111


Q ss_pred             hhhhccccccCCHHHhhc
Q psy4251         254 SWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~  271 (292)
                      ..+  ......++++.++
T Consensus       207 ~~~--~~~~~~~~~d~a~  222 (250)
T PRK07774        207 KGI--PLSRMGTPEDLVG  222 (250)
T ss_pred             hcC--CCCCCcCHHHHHH
Confidence            111  1223567888776

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.97  E-value=7.7e-29  Score=212.80  Aligned_cols=184  Identities=10%  Similarity=0.066  Sum_probs=156.1

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +++++ ||||+      +|||.++   +..|++.|+.|+  .|+.+++++..+++...  + ++.++++|+++.+++.++
T Consensus         2 ~~~vl-ItGas------~gIG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~-~~~~~~~Dl~~~~~i~~~   68 (257)
T PRK07024          2 PLKVF-ITGAS------SGIGQAL---AREYARQGATLGLVARRTDALQAFAARLPKA--A-RVSVYAADVRDADALAAA   68 (257)
T ss_pred             CCEEE-EEcCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHhcccC--C-eeEEEEcCCCCHHHHHHH
Confidence            46788 99999      9999999   555666777765  48888777766665432  2 789999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccCC--C-CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGL--G-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~--~-~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++++.++++++|++|||||....  . .+.+.++++.++++|+.|++.+++.++|.|.+++.  ++||++||..+..+. 
T Consensus        69 ~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~--~~iv~isS~~~~~~~-  145 (257)
T PRK07024         69 AADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARR--GTLVGIASVAGVRGL-  145 (257)
T ss_pred             HHHHHHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCC--CEEEEEechhhcCCC-
Confidence            99999999999999999998642  2 22567889999999999999999999999988777  999999998877654 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                 +       ....|++||++++.++++++.++..+||++++|+||+|. ++...
T Consensus       146 -----------~-------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~  191 (257)
T PRK07024        146 -----------P-------GAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH  191 (257)
T ss_pred             -----------C-------CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc
Confidence                       2       567899999999999999999999999999999999999 87653

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.97  E-value=3e-28  Score=209.74  Aligned_cols=229  Identities=17%  Similarity=0.167  Sum_probs=174.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++|+++ ||||+      +|||+++   +..|+++|+.|+.  |+.+ ..+..+++.+.  +.++.++++|+++.+++
T Consensus         3 ~~~~~~~l-ItG~s------~giG~~l---a~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v   69 (263)
T PRK08226          3 KLTGKTAL-ITGAL------QGIGEGI---ARVFARHGANLILLDISPE-IEKLADELCGR--GHRCTAVVADVRDPASV   69 (263)
T ss_pred             CCCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEecCCHH-HHHHHHHHHHh--CCceEEEECCCCCHHHH
Confidence            46789999 99999      9999999   5556677777764  6654 44555555543  45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||...  +..+.+.+++++.+++|+.+++.+++.++|.+.+...  ++||++||..+...
T Consensus        70 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~isS~~~~~~  147 (263)
T PRK08226         70 AAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKD--GRIVMMSSVTGDMV  147 (263)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--cEEEEECcHHhccc
Confidence            9999999999999999999999853  4566778889999999999999999999999977666  89999999766422


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC---Cccchh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG---TPVRTF  253 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~---~~~~~~  253 (292)
                      ..           +       +...|+.+|++++.++++++.++.+.||+|++|+||+++ ++.+......   .+....
T Consensus       148 ~~-----------~-------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~  209 (263)
T PRK08226        148 AD-----------P-------GETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVL  209 (263)
T ss_pred             CC-----------C-------CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHH
Confidence            11           2       567899999999999999999999889999999999999 8776532110   111122


Q ss_pred             hhhhcccc--ccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRP--VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+.+..|  .+.+|++.|.      ++.....+|+.+
T Consensus       210 ~~~~~~~p~~~~~~~~~va~~~~~l~~~~~~~~~g~~i  247 (263)
T PRK08226        210 TEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQN  247 (263)
T ss_pred             HHHhccCCCCCCCCHHHHHHHHHHHcCchhcCCcCceE
Confidence            22211112  2458888887      344456666643

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.97  E-value=1.4e-28  Score=213.28  Aligned_cols=234  Identities=15%  Similarity=0.076  Sum_probs=164.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|+++ |||+       +|||+++|+.   |. +|..|+  .|+.+++++..+++...  +.++.++++|++|.+++.++
T Consensus         2 ~k~~l-ItGa-------~gIG~~la~~---l~-~G~~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~   67 (275)
T PRK06940          2 KEVVV-VIGA-------GGIGQAIARR---VG-AGKKVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKAL   67 (275)
T ss_pred             CCEEE-EECC-------ChHHHHHHHH---Hh-CCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHH
Confidence            46777 9996       7999999555   43 576665  48888888888877654  45788999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC-C-
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI-T-  180 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~-~-  180 (292)
                      ++++ ++++++|+||||||+..     ..++++.++++|+.+++++++.++|.|.++    +++|+++|.++..... . 
T Consensus        68 ~~~~-~~~g~id~li~nAG~~~-----~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~----g~iv~isS~~~~~~~~~~~  137 (275)
T PRK06940         68 AATA-QTLGPVTGLVHTAGVSP-----SQASPEAILKVDLYGTALVLEEFGKVIAPG----GAGVVIASQSGHRLPALTA  137 (275)
T ss_pred             HHHH-HhcCCCCEEEECCCcCC-----chhhHHHHHHHhhHHHHHHHHHHHHHHhhC----CCEEEEEecccccCcccch
Confidence            9998 56789999999999752     235799999999999999999999999643    7889999987654320 0 


Q ss_pred             C-----CCCCccccCcC---CCCCC-hhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc
Q psy4251         181 K-----DTISKSVLSVE---NYSDF-WAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV  250 (292)
Q Consensus       181 ~-----~~~~~~~~~~~---~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~  250 (292)
                      .     ..+..+++...   .+..+ .+...|++||+++.+++++++.++.++||+||+|+||+++ ++....... ...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~-~~~  216 (275)
T PRK06940        138 EQERALATTPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNG-PRG  216 (275)
T ss_pred             hhhccccccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcC-Cch
Confidence            0     00001110000   00000 1457899999999999999999999999999999999999 876432111 000


Q ss_pred             chhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....+..  ......+|++.|.      ++.....+|+.+
T Consensus       217 ~~~~~~~~~~p~~r~~~peeia~~~~fL~s~~~~~itG~~i  257 (275)
T PRK06940        217 DGYRNMFAKSPAGRPGTPDEIAALAEFLMGPRGSFITGSDF  257 (275)
T ss_pred             HHHHHHhhhCCcccCCCHHHHHHHHHHHcCcccCcccCceE
Confidence            11111100  1123568888887      445566777643

>PRK09186 flagellin modification protein A; Provisional

Probab=99.96  E-value=2.3e-28  Score=209.53  Aligned_cols=233  Identities=13%  Similarity=0.066  Sum_probs=174.6

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++||+++ ||||+      +|||+++   +..|++.|+.|+  .|+.+++++..+++....++..+.+++||++|++++.
T Consensus         2 ~~~k~vl-ItGas------~giG~~~---a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~   71 (256)
T PRK09186          2 LKGKTIL-ITGAG------GLIGSAL---VKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLE   71 (256)
T ss_pred             CCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHH
Confidence            5789999 99999      9999999   555667787776  4888888888888866544456778899999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC-----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG-----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~-----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++.++++++|+||||||...     +..+.+.+.++..+++|+.+++.++++++|.|.+++.  ++||++||..+.
T Consensus        72 ~~~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~  149 (256)
T PRK09186         72 EFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGG--GNLVNISSIYGV  149 (256)
T ss_pred             HHHHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCC--ceEEEEechhhh
Confidence            999999999999999999997542     3456778899999999999999999999999987766  899999998765


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+....   .+.      .........|++||++++++++++++++.+.||+|++++||.+. +.......     .+..
T Consensus       150 ~~~~~~---~~~------~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~~~~~-----~~~~  215 (256)
T PRK09186        150 VAPKFE---IYE------GTSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPEAFLN-----AYKK  215 (256)
T ss_pred             ccccch---hcc------ccccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCHHHHH-----HHHh
Confidence            432100   000      00011234799999999999999999999999999999999987 54222111     0000


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ....+.++++.|+      .......+|+++
T Consensus       216 ~~--~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~  248 (256)
T PRK09186        216 CC--NGKGMLDPDDICGTLVFLLSDQSKYITGQNI  248 (256)
T ss_pred             cC--CccCCCCHHHhhhhHhheeccccccccCceE
Confidence            00  1123468888887      233345567654

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.96  E-value=1.8e-29  Score=214.72  Aligned_cols=213  Identities=17%  Similarity=0.182  Sum_probs=172.6

Q ss_pred             CCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHhC-CCccE
Q psy4251          39 PRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKF-RSLNI  115 (292)
Q Consensus        39 ~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~-~~id~  115 (292)
                      ++++|||+++   +.+++++|+.|+.  |+.+++++..+++.+..+ .+  ++++|++++++++++++++.+++ ++||+
T Consensus         3 ~~s~GiG~ai---a~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~D~~~~~~v~~~~~~~~~~~~g~iD~   76 (241)
T PF13561_consen    3 GSSSGIGRAI---ARALAEEGANVILTDRNEEKLADALEELAKEYG-AE--VIQCDLSDEESVEALFDEAVERFGGRIDI   76 (241)
T ss_dssp             SSTSHHHHHH---HHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT-SE--EEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred             CCCCChHHHH---HHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC-Cc--eEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence            3559999999   6667788888774  889888888888887764 33  59999999999999999999999 99999


Q ss_pred             EEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCcccc
Q psy4251         116 LVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVL  189 (292)
Q Consensus       116 lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~  189 (292)
                      ||||+|...      +..+.+.++|+..+++|+.+++.++++++|+|+++    ++||++||..+..+.           
T Consensus        77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----gsii~iss~~~~~~~-----------  141 (241)
T PF13561_consen   77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG----GSIINISSIAAQRPM-----------  141 (241)
T ss_dssp             EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE----EEEEEEEEGGGTSBS-----------
T ss_pred             EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCcccccchhhcccC-----------
Confidence            999999764      23456788999999999999999999999988765    899999999776654           


Q ss_pred             CcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC-CCeEEEEecCCccc-cccccccccCCccchhhhhhccccc--cCC
Q psy4251         190 SVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK-YKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVRPV--TNF  265 (292)
Q Consensus       190 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  265 (292)
                       +       +...|+++|++++.|++++|.|+.+ +|||||+|.||++. ++.+.....   ..+.....+..|+  ..+
T Consensus       142 -~-------~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~---~~~~~~~~~~~pl~r~~~  210 (241)
T PF13561_consen  142 -P-------GYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGN---EEFLEELKKRIPLGRLGT  210 (241)
T ss_dssp             -T-------TTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTH---HHHHHHHHHHSTTSSHBE
T ss_pred             -c-------cchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccc---cchhhhhhhhhccCCCcC
Confidence             2       6679999999999999999999999 99999999999999 876554311   1222222222222  358


Q ss_pred             HHHhhc------ccccCCCCCccc
Q psy4251         266 QVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       266 ~~~~a~------~~~~~~~~G~~~  283 (292)
                      |+|.|.      ++....++|+.+
T Consensus       211 ~~evA~~v~fL~s~~a~~itG~~i  234 (241)
T PF13561_consen  211 PEEVANAVLFLASDAASYITGQVI  234 (241)
T ss_dssp             HHHHHHHHHHHHSGGGTTGTSEEE
T ss_pred             HHHHHHHHHHHhCccccCccCCeE
Confidence            999987      677778888855

...

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.96  E-value=9.9e-29  Score=212.71  Aligned_cols=182  Identities=16%  Similarity=0.177  Sum_probs=150.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.+++++..+    .. +.++.++++|+++.+++
T Consensus         2 ~~~~k~vl-ItGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~l~~----~~-~~~~~~~~~D~~~~~~~   66 (262)
T TIGR03325         2 RLKGEVVL-VTGGA------SGLGRAI---VDRFVAEGARVAVLDKSAAGLQELEA----AH-GDAVVGVEGDVRSLDDH   66 (262)
T ss_pred             CcCCcEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHh----hc-CCceEEEEeccCCHHHH
Confidence            46789999 99999      9999999   5556778877764  77766555433    22 34788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCCCCCC----cchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTE----DGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~----~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      .++++++.++++++|+||||||+..   +..+.+.    ++|++.+++|+.+++.++++++|.|.++ .  ++||+++|.
T Consensus        67 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~--g~iv~~sS~  143 (262)
T TIGR03325        67 KEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVAS-R--GSVIFTISN  143 (262)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhc-C--CCEEEEecc
Confidence            9999999999999999999999752   2223333    4689999999999999999999999764 3  799999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      .+..+.            +       +...|++||++++.|++++++++.+. |+||+|+||++. ++..
T Consensus       144 ~~~~~~------------~-------~~~~Y~~sKaa~~~l~~~la~e~~~~-irvn~i~PG~i~t~~~~  193 (262)
T TIGR03325       144 AGFYPN------------G-------GGPLYTAAKHAVVGLVKELAFELAPY-VRVNGVAPGGMSSDLRG  193 (262)
T ss_pred             ceecCC------------C-------CCchhHHHHHHHHHHHHHHHHhhccC-eEEEEEecCCCcCCCcc
Confidence            776543            2       56789999999999999999999886 999999999999 8764

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.96  E-value=2.3e-28  Score=209.73  Aligned_cols=230  Identities=19%  Similarity=0.228  Sum_probs=178.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +..++..|+.|+  .|+.+++++..+++...  +.++.++.+|+++.++
T Consensus         5 ~~~~~k~il-ItGas------g~IG~~~---a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~   72 (258)
T PRK06949          5 INLEGKVAL-VTGAS------SGLGARF---AQVLAQAGAKVVLASRRVERLKELRAEIEAE--GGAAHVVSLDVTDYQS   72 (258)
T ss_pred             cCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHH
Confidence            457899999 99999      9999999   555556776665  48888888888877655  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC------CCcEEEEEc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK------LFARVVVVS  170 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~------~~~~iV~vs  170 (292)
                      +.++++++.+.++++|++|||||...  +..+.+.++++.++++|+.+++.++++++|.+.++..      ..++||++|
T Consensus        73 ~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~s  152 (258)
T PRK06949         73 IKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIA  152 (258)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEEC
Confidence            99999999999999999999999753  3455677889999999999999999999999875531      027999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       ....|+++|+++..++++++.++.++||+|++|+||+|+ ++....+.....
T Consensus       153 S~~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~  213 (258)
T PRK06949        153 SVAGLRVL------------P-------QIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWETEQG  213 (258)
T ss_pred             cccccCCC------------C-------CccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChHHH
Confidence            98765443            2       567899999999999999999999889999999999999 886643321100


Q ss_pred             cchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+...+  ....+..|++.++      .+.....+|..+
T Consensus       214 ~~~~~~~--~~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i  251 (258)
T PRK06949        214 QKLVSML--PRKRVGKPEDLDGLLLLLAADESQFINGAII  251 (258)
T ss_pred             HHHHhcC--CCCCCcCHHHHHHHHHHHhChhhcCCCCcEE
Confidence            1111111  1123567888776      444556677654

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.96  E-value=6.8e-29  Score=212.70  Aligned_cols=202  Identities=12%  Similarity=0.058  Sum_probs=161.6

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEE--EcCHHH-HHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFY--QNCWDK-ANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~--~r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      -++++++ ||||+      +|||+++   +.+++++| ..|+  .|+.++ ++++.+++.... +.++.++++|++|.++
T Consensus         6 ~~~~~vl-ItGas------~giG~~l---a~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~   74 (253)
T PRK07904          6 GNPQTIL-LLGGT------SEIGLAI---CERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDS   74 (253)
T ss_pred             CCCcEEE-EEcCC------cHHHHHH---HHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHH
Confidence            3578888 99999      9999999   55555653 5554  588775 888888887652 3478999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCC--CCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFS--HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~--~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.+ .+++|++|+|+|...+..+  .+.+..++++++|+.+++.+++.++|.|.+++.  ++||++||..+..
T Consensus        75 ~~~~~~~~~~-~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~--~~iv~isS~~g~~  151 (253)
T PRK07904         75 HPKVIDAAFA-GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF--GQIIAMSSVAGER  151 (253)
T ss_pred             HHHHHHHHHh-cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC--ceEEEEechhhcC
Confidence            9999999886 4899999999998743221  123345578999999999999999999998877  9999999987654


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||+++..|+++++.++.++||+|++|+||+++ ++......          
T Consensus       152 ~~------------~-------~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~~~~----------  202 (253)
T PRK07904        152 VR------------R-------SNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAHAKE----------  202 (253)
T ss_pred             CC------------C-------CCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhccCCC----------
Confidence            33            2       456799999999999999999999999999999999999 87765321          


Q ss_pred             hhccccccCCHHHhhc
Q psy4251         256 ISRVRPVTNFQVDLTG  271 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~  271 (292)
                          .+...++++.|+
T Consensus       203 ----~~~~~~~~~~A~  214 (253)
T PRK07904        203 ----APLTVDKEDVAK  214 (253)
T ss_pred             ----CCCCCCHHHHHH
Confidence                122458888887

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.96  E-value=2.3e-28  Score=208.55  Aligned_cols=227  Identities=16%  Similarity=0.113  Sum_probs=178.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++|+++ ||||+      +|||.++   +..+.++|+.|+  .|+.+++++..+++...  +.++.++++|+++.+++
T Consensus         4 ~~~~~~vl-ItGa~------g~iG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~   71 (250)
T PRK12939          4 NLAGKRAL-VTGAA------RGLGAAF---AEALAEAGATVAFNDGLAAEARELAAALEAA--GGRAHAIAADLADPASV   71 (250)
T ss_pred             CCCCCEEE-EeCCC------ChHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHH
Confidence            46789999 99999      9999999   555666777765  48888888888887655  45799999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.+.++++|++|||||...  +..+.+.++++.++++|+.+++.+++.+.|.+.+++.  ++||++||..+..+
T Consensus        72 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g~iv~isS~~~~~~  149 (250)
T PRK12939         72 QRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGR--GRIVNLASDTALWG  149 (250)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--eEEEEECchhhccC
Confidence            9999999999999999999999863  3456678899999999999999999999999987666  89999999877655


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       ....|+++|++++.+++.++.++...+|++++|+||.++ ++.+..........+....
T Consensus       150 ~------------~-------~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~  210 (250)
T PRK12939        150 A------------P-------KLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYLKGR  210 (250)
T ss_pred             C------------C-------CcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCChHHHHHHHhcC
Confidence            4            2       456899999999999999999998889999999999999 8775532210111111111


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ..+...++++.|+      .......+|+.+
T Consensus       211 --~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i  241 (250)
T PRK12939        211 --ALERLQVPDDVAGAVLFLLSDAARFVTGQLL  241 (250)
T ss_pred             --CCCCCCCHHHHHHHHHHHhCccccCccCcEE
Confidence              2223567888877      233345567654

>PRK06484 short chain dehydrogenase; Validated

Probab=99.96  E-value=1.3e-28  Score=231.66  Aligned_cols=185  Identities=16%  Similarity=0.256  Sum_probs=159.7

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++||+++ |||++      +|||+++   +..|+++|+.|+  .|+.+++++..+++     +.++.++++|++++++++
T Consensus         3 ~~~k~~l-ITGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~   67 (520)
T PRK06484          3 AQSRVVL-VTGAA------GGIGRAA---CQRFARAGDQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIR   67 (520)
T ss_pred             CCCeEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHH
Confidence            4688998 99999      9999999   556677787776  48888777766655     346788999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCc-EEEEEcCcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA-RVVVVSSESHR  175 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~-~iV~vsS~~~~  175 (292)
                      ++++++.++++++|+||||||+..    +..+.+.++|++++++|+.+++.++++++|+|.+++.  + +||++||..+.
T Consensus        68 ~~~~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g~~iv~isS~~~~  145 (520)
T PRK06484         68 EGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGH--GAAIVNVASGAGL  145 (520)
T ss_pred             HHHHHHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CCeEEEECCcccC
Confidence            999999999999999999999842    3456788999999999999999999999999977554  5 99999998877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+.            +       ....|+++|+++..|+++++.|+.+.||+|++|+||+|+ ++....
T Consensus       146 ~~~------------~-------~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~  195 (520)
T PRK06484        146 VAL------------P-------KRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAEL  195 (520)
T ss_pred             CCC------------C-------CCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhh
Confidence            654            2       567899999999999999999999999999999999999 876543

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.96  E-value=2.4e-28  Score=208.00  Aligned_cols=185  Identities=17%  Similarity=0.159  Sum_probs=157.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++++|+++ ||||+      +|||+.+   +..+.++|+.++.   ++....++..+++.+.  +.++.++++|+++.++
T Consensus         2 ~~~~~~vl-ItG~~------~~iG~~l---a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~   69 (245)
T PRK12937          2 TLSNKVAI-VTGAS------RGIGAAI---ARRLAADGFAVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAA   69 (245)
T ss_pred             CCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            57789999 99999      9999999   5556677877653   3455667777777654  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.++++++|++|||||...  +..+.+.+++++++++|+.+++.++++++|.|.+  .  ++||++||..+..
T Consensus        70 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~--~~iv~~ss~~~~~  145 (245)
T PRK12937         70 VTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQ--G--GRIINLSTSVIAL  145 (245)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhcc--C--cEEEEEeeccccC
Confidence            99999999999999999999999863  3456678889999999999999999999999864  3  8999999986655


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      +.            +       +...|+.+|++++.++++++.++.+.||+++.++||+++ ++..
T Consensus       146 ~~------------~-------~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~  192 (245)
T PRK12937        146 PL------------P-------GYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFF  192 (245)
T ss_pred             CC------------C-------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhc
Confidence            43            2       567899999999999999999999889999999999999 8753

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.96  E-value=4e-28  Score=209.88  Aligned_cols=185  Identities=14%  Similarity=0.138  Sum_probs=162.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||+      +|||+++   +.+|++.|..|+  .|+.+++++..+++.+.  +.++.++++|+++++++.+++
T Consensus         1 ~~vl-VtGas------ggIG~~l---a~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~   68 (270)
T PRK05650          1 NRVM-ITGAA------SGLGRAI---ALRWAREGWRLALADVNEEGGEETLKLLREA--GGDGFYQRCDVRDYSQLTALA   68 (270)
T ss_pred             CEEE-EecCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHHHHHHH
Confidence            3577 99999      9999999   555667787776  48888888888888765  567889999999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++.++++++|+||||||...  ...+.+.++++..+++|+.+++.+++.++|.|.+++.  ++||++||..+..+.   
T Consensus        69 ~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~vsS~~~~~~~---  143 (270)
T PRK05650         69 QACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKS--GRIVNIASMAGLMQG---  143 (270)
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC--CEEEEECChhhcCCC---
Confidence            999999999999999999864  4566788899999999999999999999999987766  899999998777654   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                               +       +...|+++|+++.+++++++.++.+.||++++|+||+++ ++....
T Consensus       144 ---------~-------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~  190 (270)
T PRK05650        144 ---------P-------AMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSF  190 (270)
T ss_pred             ---------C-------CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCccccc
Confidence                     2       678999999999999999999999889999999999999 877654

>KOG1610|consensus

Probab=99.96  E-value=1e-28  Score=208.21  Aligned_cols=185  Identities=21%  Similarity=0.190  Sum_probs=161.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEc--CHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQN--CWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r--~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++.+|.|+ |||+.      +|+|+.+   +.+|.+.|+.|+..  +++.+++...+.+    +.+...+++|++++++
T Consensus        25 ~~~~~k~Vl-ITGCD------SGfG~~L---A~~L~~~Gf~V~Agcl~~~gae~L~~~~~----s~rl~t~~LDVT~~es   90 (322)
T KOG1610|consen   25 DSLSDKAVL-ITGCD------SGFGRLL---AKKLDKKGFRVFAGCLTEEGAESLRGETK----SPRLRTLQLDVTKPES   90 (322)
T ss_pred             cccCCcEEE-EecCC------cHHHHHH---HHHHHhcCCEEEEEeecCchHHHHhhhhc----CCcceeEeeccCCHHH
Confidence            556677777 99999      9999999   77788999999864  4555555555443    4688889999999999


Q ss_pred             HHHHHHHHHHhCC--CccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          99 VKKFAEEYQKKFR--SLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        99 v~~~~~~~~~~~~--~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      |+++.+.++++.+  .+-.||||||+.   ++.+-.+.+++++.++||++|++.++++++|++++++   ||||+|||..
T Consensus        91 i~~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar---GRvVnvsS~~  167 (322)
T KOG1610|consen   91 VKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR---GRVVNVSSVL  167 (322)
T ss_pred             HHHHHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc---CeEEEecccc
Confidence            9999999998764  599999999976   3556678999999999999999999999999998876   8999999999


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      ++.+.            +       ....|++||+|++.|+.++.+|+.+.||.|..|.||+.+ ++..
T Consensus       168 GR~~~------------p-------~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~  217 (322)
T KOG1610|consen  168 GRVAL------------P-------ALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN  217 (322)
T ss_pred             cCccC------------c-------ccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC
Confidence            98876            3       678899999999999999999999999999999999998 8876

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.96  E-value=8.6e-28  Score=205.40  Aligned_cols=188  Identities=15%  Similarity=0.097  Sum_probs=162.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||.++   +..|++.|+.|+  .|+.+..++..+++. .  +.++.++++|++|++++
T Consensus         2 ~~~~k~~l-ItG~s------g~iG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~   68 (252)
T PRK06138          2 RLAGRVAI-VTGAG------SGIGRAT---AKLFAREGARVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAV   68 (252)
T ss_pred             CCCCcEEE-EeCCC------chHHHHH---HHHHHHCCCeEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHH
Confidence            57899999 99999      9999999   555556776665  488887777777665 2  56789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||...  +..+.+.++++.++++|+.+++.+++.++|.|++++.  ++||++||..+..+
T Consensus        69 ~~~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~ii~~sS~~~~~~  146 (252)
T PRK06138         69 EALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGG--GSIVNTASQLALAG  146 (252)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCC--eEEEEECChhhccC
Confidence            9999999999999999999999863  3456788899999999999999999999999987776  89999999877655


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .            +       +...|+.+|+++..++++++.++...||++++++||.+. ++.+..
T Consensus       147 ~------------~-------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~  194 (252)
T PRK06138        147 G------------R-------GRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRI  194 (252)
T ss_pred             C------------C-------CccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhh
Confidence            4            2       567899999999999999999998889999999999999 776543

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.96  E-value=3.6e-28  Score=207.26  Aligned_cols=214  Identities=18%  Similarity=0.182  Sum_probs=171.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++++|+++ ||||+      +|||.++   +.+++++|..|++   |+.+..++..+++.+.  +.++.++++|++++++
T Consensus         3 ~~~~~~~l-ItG~s------~~iG~~l---a~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~   70 (247)
T PRK12935          3 QLNGKVAI-VTGGA------KGIGKAI---TVALAQEGAKVVINYNSSKEAAENLVNELGKE--GHDVYAVQADVSKVED   70 (247)
T ss_pred             CCCCCEEE-EECCC------CHHHHHH---HHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            46789999 99999      9999999   5556677877764   4566666766777654  4579999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCC--CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGL--GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~--~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.+.++++|+||||||....  ..+.+.++++..+++|+.+++.++++++|.+.++..  ++||++||..+..
T Consensus        71 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~  148 (247)
T PRK12935         71 ANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEE--GRIISISSIIGQA  148 (247)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEEcchhhcC
Confidence            999999999999999999999998642  345677899999999999999999999999987766  8999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|+++|+++++++++++.++.+.||+++.++||.++ ++....+.. ........
T Consensus       149 ~~------------~-------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~-~~~~~~~~  208 (247)
T PRK12935        149 GG------------F-------GQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVPEE-VRQKIVAK  208 (247)
T ss_pred             CC------------C-------CCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhccHH-HHHHHHHh
Confidence            43            2       567899999999999999999998889999999999999 776543221 11111122


Q ss_pred             hhccccccCCHHHhhc
Q psy4251         256 ISRVRPVTNFQVDLTG  271 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~  271 (292)
                      .  ...-...+++.++
T Consensus       209 ~--~~~~~~~~edva~  222 (247)
T PRK12935        209 I--PKKRFGQADEIAK  222 (247)
T ss_pred             C--CCCCCcCHHHHHH
Confidence            2  2233568888877

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.96  E-value=5.2e-28  Score=206.54  Aligned_cols=188  Identities=20%  Similarity=0.190  Sum_probs=161.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++++++ ||||+      +|||.++   +..|.+.|+.|+  .|+.++.++...++..   +.++.++++|++|.+++
T Consensus         2 ~~~~~~vl-ItGas------g~iG~~l---~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~   68 (251)
T PRK07231          2 RLEGKVAI-VTGAS------SGIGEGI---ARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADV   68 (251)
T ss_pred             CcCCcEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHH
Confidence            46788999 99999      9999999   555666676665  5888888777776654   35789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++.++++++|+||||||...   +..+.+.++++..+++|+.+++.+++.+++.+.++..  ++||++||..+..
T Consensus        69 ~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~  146 (251)
T PRK07231         69 EAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGG--GAIVNVASTAGLR  146 (251)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--cEEEEEcChhhcC
Confidence            9999999988999999999999753   3456788999999999999999999999999987766  8999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      +.            +       +...|+.+|+++..+++.++.++.+.||++++++||++. ++.+..
T Consensus       147 ~~------------~-------~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~  195 (251)
T PRK07231        147 PR------------P-------GLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAF  195 (251)
T ss_pred             CC------------C-------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhh
Confidence            54            2       677899999999999999999998889999999999999 876654

>KOG1207|consensus

Probab=99.96  E-value=1.1e-29  Score=195.70  Aligned_cols=186  Identities=22%  Similarity=0.200  Sum_probs=156.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|.|+.++ +||+.      .|||+++   ++.|+..|+.|+.  |+++.+.++..+.    | .-+.-++.|+++.+.
T Consensus         3 t~laG~~vl-vTgag------aGIG~~~---v~~La~aGA~ViAvaR~~a~L~sLV~e~----p-~~I~Pi~~Dls~wea   67 (245)
T KOG1207|consen    3 TSLAGVIVL-VTGAG------AGIGKEI---VLSLAKAGAQVIAVARNEANLLSLVKET----P-SLIIPIVGDLSAWEA   67 (245)
T ss_pred             ccccceEEE-eeccc------ccccHHH---HHHHHhcCCEEEEEecCHHHHHHHHhhC----C-cceeeeEecccHHHH
Confidence            357899999 99999      9999999   8889999999984  8888877766543    2 358889999999777


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh-cCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-GAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~-~~~~~~~iV~vsS~~~~  175 (292)
                      +++.+..    .+++|.+|||||+.  .++.+++.+.|+.+|++|+.+.+++++....-+.. +-+  |.||++||.++.
T Consensus        68 ~~~~l~~----v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~--GaIVNvSSqas~  141 (245)
T KOG1207|consen   68 LFKLLVP----VFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIK--GAIVNVSSQASI  141 (245)
T ss_pred             HHHhhcc----cCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCC--ceEEEecchhcc
Confidence            7666444    36899999999986  57889999999999999999999999885544432 235  899999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF  246 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~  246 (292)
                      .+.                   .....|+++|+|+.++++++|.|+.+++||||+|+|-.|. .|.+..|.+
T Consensus       142 R~~-------------------~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSD  194 (245)
T KOG1207|consen  142 RPL-------------------DNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSD  194 (245)
T ss_pred             ccc-------------------CCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCC
Confidence            654                   2688999999999999999999999999999999999999 998876654

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.96  E-value=5.4e-28  Score=208.41  Aligned_cols=183  Identities=14%  Similarity=0.140  Sum_probs=156.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++|+++ ||||+      +|||.++   +.+++..|+.|+  .|+.+.+++..+++...  +.++.++++|+++.++
T Consensus         5 ~~~~~k~il-ItGas------ggIG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~   72 (264)
T PRK07576          5 FDFAGKNVV-VVGGT------SGINLGI---AQAFARAGANVAVASRSQEKVDAAVAQLQQA--GPEGLGVSADVRDYAA   72 (264)
T ss_pred             ccCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEECCCCCHHH
Confidence            357899999 99999      9999999   555667787765  48888877777777655  3467889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.+.++++|++|||||...  +..+.+.++++..+++|+.+++.++++++|.|.++ .  ++||++||..+..
T Consensus        73 i~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~-~--g~iv~iss~~~~~  149 (264)
T PRK07576         73 VEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRP-G--ASIIQISAPQAFV  149 (264)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-C--CEEEEECChhhcc
Confidence            99999999999999999999998652  44567788999999999999999999999998754 3  8999999987655


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      +.            +       +...|+++|++++.|+++++.++...||+|++|+||.++
T Consensus       150 ~~------------~-------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~  191 (264)
T PRK07576        150 PM------------P-------MQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIA  191 (264)
T ss_pred             CC------------C-------CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence            43            2       677899999999999999999999889999999999986

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.96  E-value=5.8e-28  Score=210.92  Aligned_cols=188  Identities=18%  Similarity=0.143  Sum_probs=156.9

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH-HHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW-DKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..+++||+++ ||||+      +|||.++   +.+++++|+.|+.  |+. +..+...+.+...  +.++.++++|+++.
T Consensus        41 ~~~~~~k~iL-ItGas------ggIG~~l---a~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~  108 (290)
T PRK06701         41 SGKLKGKVAL-ITGGD------SGIGRAV---AVLFAKEGADIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDE  108 (290)
T ss_pred             ccCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCH
Confidence            3578899999 99999      9999999   5556677777653  553 3444555555433  45788999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      ++++++++++.+.++++|+||||||...   +..+.+.++|+.++++|+.+++.+++++++.|++  .  ++||++||.+
T Consensus       109 ~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~--~--g~iV~isS~~  184 (290)
T PRK06701        109 AFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQ--G--SAIINTGSIT  184 (290)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhh--C--CeEEEEeccc
Confidence            9999999999999999999999999753   3456788899999999999999999999999853  3  8999999987


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +..+.            +       ....|+++|+++..++++++.++.++||+|++|+||++. ++...
T Consensus       185 ~~~~~------------~-------~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~  235 (290)
T PRK06701        185 GYEGN------------E-------TLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPS  235 (290)
T ss_pred             ccCCC------------C-------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCccccc
Confidence            76554            2       456899999999999999999999899999999999999 87654

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.96  E-value=8.8e-28  Score=203.98  Aligned_cols=219  Identities=17%  Similarity=0.127  Sum_probs=173.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC--h
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR--L   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~--~   96 (292)
                      ++++||+++ ||||+      +|||+++++   .++++|+.|+  .|+.+++++..+++.+.. +..+.++++|+++  .
T Consensus         2 ~~l~~k~vl-ItG~s------ggiG~~la~---~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~   70 (239)
T PRK08703          2 ATLSDKTIL-VTGAS------QGLGEQVAK---AYAAAGATVILVARHQKKLEKVYDAIVEAG-HPEPFAIRFDLMSAEE   70 (239)
T ss_pred             CCCCCCEEE-EECCC------CcHHHHHHH---HHHHcCCEEEEEeCChHHHHHHHHHHHHcC-CCCcceEEeeecccch
Confidence            457899999 99999      999999955   4556677765  488888888888876542 3467788999986  5


Q ss_pred             HHHHHHHHHHHHhC-CCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          97 KSVKKFAEEYQKKF-RSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        97 ~~v~~~~~~~~~~~-~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +++.++++++.+.+ +++|++|||||..   .+..+.+.+++++.+++|+.+++.++++++|.|.+.+.  ++||+++|.
T Consensus        71 ~~~~~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~--~~iv~~ss~  148 (239)
T PRK08703         71 KEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPD--ASVIFVGES  148 (239)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCC--CEEEEEecc
Confidence            68899999999888 7899999999975   34567788899999999999999999999999987766  899999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCC-CeEEEEecCCccc-cccccccccCCcc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKY-KIALSSRHCCWKI-TVSKKWWRFGTPV  250 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~-gi~v~~v~PG~v~-~~~~~~~~~~~~~  250 (292)
                      .+..+.            +       ....|++||++++.++++++.++... +|+|++|+||+|. ++.......... 
T Consensus       149 ~~~~~~------------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~-  208 (239)
T PRK08703        149 HGETPK------------A-------YWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPGEAK-  208 (239)
T ss_pred             ccccCC------------C-------CccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCCCCCc-
Confidence            766543            2       56789999999999999999999876 6999999999999 876543221000 


Q ss_pred             chhhhhhccccccCCHHHhhc------ccccCCCCCcc
Q psy4251         251 RTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLP  282 (292)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~  282 (292)
                                .-..++++.+.      .+.....+|+.
T Consensus       209 ----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~  236 (239)
T PRK08703        209 ----------SERKSYGDVLPAFVWWASAESKGRSGEI  236 (239)
T ss_pred             ----------cccCCHHHHHHHHHHHhCccccCcCCeE
Confidence                      01246666664      45566777764

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.96  E-value=8.3e-28  Score=206.55  Aligned_cols=194  Identities=19%  Similarity=0.232  Sum_probs=161.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||..+++   .|++.|+.|+  .|+.++++...+++...  +.++.+++||++|.++
T Consensus         8 ~~~~~k~il-ItGa~------g~IG~~la~---~l~~~G~~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~   75 (259)
T PRK08213          8 FDLSGKTAL-VTGGS------RGLGLQIAE---ALGEAGARVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEAD   75 (259)
T ss_pred             hCcCCCEEE-EECCC------chHHHHHHH---HHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHH
Confidence            346789999 99999      999999944   4556776765  48888888777777654  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHH-HHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENA-LIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~-l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+.++++|++|||||..  .+..+.+.++|++.+++|+.+++.+++++.++ +.+++.  ++||++||..+.
T Consensus        76 i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~--~~~v~~sS~~~~  153 (259)
T PRK08213         76 IERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGY--GRIINVASVAGL  153 (259)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCC--eEEEEECChhhc
Confidence            9999999999889999999999975  24456677899999999999999999999998 766656  899999998766


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+..               ....+...|+++|++++.+++++++++.+.||+++.|+||+++ ++.+..
T Consensus       154 ~~~~---------------~~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~  207 (259)
T PRK08213        154 GGNP---------------PEVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGT  207 (259)
T ss_pred             cCCC---------------ccccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhh
Confidence            5431               1112457899999999999999999999889999999999999 776543

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.96  E-value=8.1e-28  Score=206.45  Aligned_cols=187  Identities=14%  Similarity=0.152  Sum_probs=156.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +..|+++|+.|+  .|+.++. +..+++.+.  +.++.++++|+++.++
T Consensus         3 ~~l~~~~il-ItGas------ggiG~~l---a~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~D~~~~~~   69 (258)
T PRK08628          3 LNLKDKVVI-VTGGA------SGIGAAI---SLRLAEEGAIPVIFGRSAPDD-EFAEELRAL--QPRAEFVQVDLTDDAQ   69 (258)
T ss_pred             CCcCCCEEE-EeCCC------ChHHHHH---HHHHHHcCCcEEEEcCChhhH-HHHHHHHhc--CCceEEEEccCCCHHH
Confidence            468899999 99999      9999999   555666776655  4776665 666777655  4578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCC-CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGL-GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~-~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +.++++++.+.++++|+||||||.... ..+.+.++|+..+++|+.+++.+++.++|.++++ .  ++||++||..+..+
T Consensus        70 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~--~~iv~~ss~~~~~~  146 (258)
T PRK08628         70 CRDAVEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKAS-R--GAIVNISSKTALTG  146 (258)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhcc-C--cEEEEECCHHhccC
Confidence            999999999999999999999997532 2233348899999999999999999999988754 3  89999999877755


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .            +       +...|+.||++++.++++++.++.++||++++|+||.+. ++.+.
T Consensus       147 ~------------~-------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~  193 (258)
T PRK08628        147 Q------------G-------GTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYEN  193 (258)
T ss_pred             C------------C-------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHH
Confidence            4            2       567899999999999999999998889999999999999 87543

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.96  E-value=8.4e-28  Score=207.08  Aligned_cols=187  Identities=16%  Similarity=0.146  Sum_probs=160.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++|++++ ||||+      +|||++++++   |..+|+.|+  .|+.+++++..+++...  +.++.++++|+++++++
T Consensus         7 ~~~~~~vl-ItGas------ggIG~~~a~~---l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~   74 (263)
T PRK07814          7 RLDDQVAV-VTGAG------RGLGAAIALA---FAEAGADVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAHPEAT   74 (263)
T ss_pred             cCCCCEEE-EECCC------ChHHHHHHHH---HHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHH
Confidence            47899999 99999      9999999554   556777765  48888888888877654  45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh-cCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-GAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~-~~~~~~~iV~vsS~~~~~  176 (292)
                      .++++++.+.++++|+||||||...  +..+.+.++++.++++|+.+++.+++++.|.|.+ +..  ++||++||..+..
T Consensus        75 ~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--g~iv~~sS~~~~~  152 (263)
T PRK07814         75 AGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGG--GSVINISSTMGRL  152 (263)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCC--eEEEEEccccccC
Confidence            9999999999999999999999753  3456788899999999999999999999999976 455  8999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       +...|+++|++++.++++++.++.+ +|++|+|+||++. ++...
T Consensus       153 ~~------------~-------~~~~Y~~sK~a~~~~~~~~~~e~~~-~i~v~~i~Pg~v~t~~~~~  199 (263)
T PRK07814        153 AG------------R-------GFAAYGTAKAALAHYTRLAALDLCP-RIRVNAIAPGSILTSALEV  199 (263)
T ss_pred             CC------------C-------CCchhHHHHHHHHHHHHHHHHHHCC-CceEEEEEeCCCcCchhhh
Confidence            43            2       6778999999999999999999987 6999999999999 76543

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.96  E-value=8.1e-28  Score=205.20  Aligned_cols=226  Identities=13%  Similarity=0.036  Sum_probs=170.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |+++ ||||+      +|||.++   +..|++.|+.|+.   |+.+++++..+++...  +.++.+++||+++.+++.++
T Consensus         3 k~il-ItGas------~giG~~l---a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~   70 (248)
T PRK06947          3 KVVL-ITGAS------RGIGRAT---AVLAAARGWSVGINYARDAAAAEETADAVRAA--GGRACVVAGDVANEADVIAM   70 (248)
T ss_pred             cEEE-EeCCC------CcHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEeccCCHHHHHHH
Confidence            5677 99999      9999999   5556677776642   6777777777777654  45799999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC-CCcEEEEEcCccccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK-LFARVVVVSSESHRYSY  178 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~-~~~~iV~vsS~~~~~~~  178 (292)
                      ++++.+.++++|+||||||...   +..+.+.++++..+++|+.+++.+++.+++.+..++. +.++||++||..+..+.
T Consensus        71 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~  150 (248)
T PRK06947         71 FDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS  150 (248)
T ss_pred             HHHHHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC
Confidence            9999988999999999999863   3456678899999999999999999999998865431 11789999998776553


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhh
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWIS  257 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~  257 (292)
                      .           .       ....|++||+++.++++++++++.+.||+|+.++||+++ ++................. 
T Consensus       151 ~-----------~-------~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~-  211 (248)
T PRK06947        151 P-----------N-------EYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQT-  211 (248)
T ss_pred             C-----------C-------CCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHHHhhcC-
Confidence            1           1       235799999999999999999999889999999999999 8754321100000111111 


Q ss_pred             ccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         258 RVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       258 ~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ......++++.++      .......+|.++
T Consensus       212 -~~~~~~~~e~va~~~~~l~~~~~~~~~G~~~  242 (248)
T PRK06947        212 -PLGRAGEADEVAETIVWLLSDAASYVTGALL  242 (248)
T ss_pred             -CCCCCcCHHHHHHHHHHHcCccccCcCCceE
Confidence             1112457888887      233345677765

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.96  E-value=3.9e-28  Score=210.75  Aligned_cols=180  Identities=16%  Similarity=0.035  Sum_probs=152.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+|+++ ||||+      +|||+++   +..+.+.|+.|+  +|+.++++++    .+.    .+.++++|++|.+++++
T Consensus         3 ~~k~vl-ItGas------ggiG~~l---a~~l~~~G~~Vi~~~r~~~~~~~l----~~~----~~~~~~~Dl~d~~~~~~   64 (277)
T PRK05993          3 MKRSIL-ITGCS------SGIGAYC---ARALQSDGWRVFATCRKEEDVAAL----EAE----GLEAFQLDYAEPESIAA   64 (277)
T ss_pred             CCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHH----HHC----CceEEEccCCCHHHHHH
Confidence            367888 99999      9999999   555667787776  4777665543    221    47788999999999999


Q ss_pred             HHHHHHHhC-CCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         102 FAEEYQKKF-RSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       102 ~~~~~~~~~-~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +++++.+.+ +++|+||||||+..  +..+.+.++++..+++|+.|++.+++.++|.|.+++.  ++||++||..+..+.
T Consensus        65 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~--g~iv~isS~~~~~~~  142 (277)
T PRK05993         65 LVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ--GRIVQCSSILGLVPM  142 (277)
T ss_pred             HHHHHHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC--CEEEEECChhhcCCC
Confidence            999997765 68999999999863  4566788899999999999999999999999988777  899999998776554


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                  +       +...|++||++++.|+++++.|+.+.||+|++|+||+++ ++.++
T Consensus       143 ------------~-------~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~  188 (277)
T PRK05993        143 ------------K-------YRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFRAN  188 (277)
T ss_pred             ------------C-------ccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchhhH
Confidence                        2       567899999999999999999999999999999999999 88765

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.96  E-value=7.5e-28  Score=206.61  Aligned_cols=185  Identities=18%  Similarity=0.247  Sum_probs=158.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .+.+|+++ ||||+      +|||+++   +..|+++|+.|+  .|+.++.++..+++     +.++.++++|++|.+++
T Consensus         3 ~l~~~~vl-ItGas------~~iG~~i---a~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~   67 (257)
T PRK07067          3 RLQGKVAL-LTGAA------SGIGEAV---AERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSI   67 (257)
T ss_pred             CCCCCEEE-EeCCC------chHHHHH---HHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHH
Confidence            36789998 99999      9999999   666777887776  48887777666554     23688899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~  176 (292)
                      .++++++.++++++|++|||||...  +..+.+.++++.++++|+.+++.+++++++.|.++. .  ++||++||..+..
T Consensus        68 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--~~iv~~sS~~~~~  145 (257)
T PRK07067         68 DRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRG--GKIINMASQAGRR  145 (257)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC--cEEEEeCCHHhCC
Confidence            9999999999999999999999863  456678889999999999999999999999987643 4  7999999987665


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       +...|++||+++..+++++++++.++||++|+|+||++. ++.+.
T Consensus       146 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~  193 (257)
T PRK07067        146 GE------------A-------LVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQ  193 (257)
T ss_pred             CC------------C-------CCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhh
Confidence            54            2       567899999999999999999999999999999999999 77543

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.96  E-value=1.1e-27  Score=206.34  Aligned_cols=186  Identities=17%  Similarity=0.113  Sum_probs=158.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++++++ ||||+      +|||+++   +..++++|+.|+  .|+.+++++...++ ..  +.++.++++|++|.+++
T Consensus         2 ~~~~~~vl-ItG~s------~~iG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~   68 (263)
T PRK09072          2 DLKDKRVL-LTGAS------GGIGQAL---AEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGR   68 (263)
T ss_pred             CCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHH
Confidence            46788888 99999      9999999   555566777765  48888888877777 22  45889999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++.+.+ ++++|++|||||...  +..+.+.++++.++++|+.|++.+++.++|++.+++.  ++||++||..+..+
T Consensus        69 ~~~~~~~~~-~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~--~~iv~isS~~~~~~  145 (263)
T PRK09072         69 EAVLARARE-MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPS--AMVVNVGSTFGSIG  145 (263)
T ss_pred             HHHHHHHHh-cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--CEEEEecChhhCcC
Confidence            999999876 789999999999863  4566788899999999999999999999999987766  89999999877655


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .            +       +...|+.+|+++..++++++.++.+.||+|++|+||+++ ++...
T Consensus       146 ~------------~-------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~  192 (263)
T PRK09072        146 Y------------P-------GYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSE  192 (263)
T ss_pred             C------------C-------CccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhh
Confidence            4            2       567899999999999999999999999999999999999 77543

>TIGR02415 23BDH acetoin reductases

Probab=99.96  E-value=1.5e-27  Score=204.28  Aligned_cols=184  Identities=17%  Similarity=0.163  Sum_probs=158.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ |||++      +|||+++   +..|.+.|+.|+  .|+.+.+++..+++...  +.++.++.+|++|++++.+++
T Consensus         1 k~~l-ItG~s------g~iG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~i~~~~   68 (254)
T TIGR02415         1 KVAL-VTGGA------QGIGKGI---AERLAKDGFAVAVADLNEETAKETAKEINQA--GGKAVAYKLDVSDKDQVFSAI   68 (254)
T ss_pred             CEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHHHHHHH
Confidence            5677 99999      9999999   555667777765  48888888887777654  557899999999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccccCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +++.+.++++|+||||||...  +..+.+.+++++++++|+.+++.+++.+++.|.+.+ .  ++||++||..+..+.  
T Consensus        69 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~~~~--  144 (254)
T TIGR02415        69 DQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHG--GKIINAASIAGHEGN--  144 (254)
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCC--eEEEEecchhhcCCC--
Confidence            999999999999999999863  456778899999999999999999999999998754 4  799999998776654  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                +       ....|+.+|++++.+++.+++++.+.||+|++|+||+++ ++.+.
T Consensus       145 ----------~-------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~  190 (254)
T TIGR02415       145 ----------P-------ILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEE  190 (254)
T ss_pred             ----------C-------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhh
Confidence                      2       577899999999999999999999889999999999999 77654

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.96  E-value=1.1e-27  Score=205.09  Aligned_cols=218  Identities=14%  Similarity=0.100  Sum_probs=168.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +..|+..|+.|+.  |+.++        ...  +.++.++++|+++.++
T Consensus         2 ~~~~~k~~l-ItGas------~gIG~~l---a~~l~~~g~~v~~~~r~~~~--------~~~--~~~~~~~~~D~~~~~~   61 (252)
T PRK07856          2 LDLTGRVVL-VTGGT------RGIGAGI---ARAFLAAGATVVVCGRRAPE--------TVD--GRPAEFHAADVRDPDQ   61 (252)
T ss_pred             CCCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCChhh--------hhc--CCceEEEEccCCCHHH
Confidence            357899999 99999      9999999   5556677877764  66543        111  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+.++++|+||||||+..  +..+.+.++|++.+++|+.+++.+++.+.|.|.++ ..  ++||++||..+.
T Consensus        62 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--g~ii~isS~~~~  139 (252)
T PRK07856         62 VAALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGG--GSIVNIGSVSGR  139 (252)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--cEEEEEcccccC
Confidence            99999999999999999999999763  34566788899999999999999999999999764 34  899999998776


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       ....|+++|++++.|+++++.++.+. |++|+|+||+|+ ++.......  + ....
T Consensus       140 ~~~------------~-------~~~~Y~~sK~a~~~l~~~la~e~~~~-i~v~~i~Pg~v~t~~~~~~~~~--~-~~~~  196 (252)
T PRK07856        140 RPS------------P-------GTAAYGAAKAGLLNLTRSLAVEWAPK-VRVNAVVVGLVRTEQSELHYGD--A-EGIA  196 (252)
T ss_pred             CCC------------C-------CCchhHHHHHHHHHHHHHHHHHhcCC-eEEEEEEeccccChHHhhhccC--H-HHHH
Confidence            654            2       56789999999999999999999887 999999999999 775442211  1 1111


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+..  ......+|++.|.      .+.....+|+.+
T Consensus       197 ~~~~~~~~~~~~~p~~va~~~~~L~~~~~~~i~G~~i  233 (252)
T PRK07856        197 AVAATVPLGRLATPADIAWACLFLASDLASYVSGANL  233 (252)
T ss_pred             HHhhcCCCCCCcCHHHHHHHHHHHcCcccCCccCCEE
Confidence            1101  1123467888886      344455677654

>PRK06182 short chain dehydrogenase; Validated

Probab=99.96  E-value=8.3e-28  Score=208.20  Aligned_cols=179  Identities=19%  Similarity=0.126  Sum_probs=153.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++|+++ |||++      +|||+++   +.++.+.|+.|+  .|+.+++++..    +    ..+.++++|++|.+++++
T Consensus         2 ~~k~vl-ItGas------ggiG~~l---a~~l~~~G~~V~~~~r~~~~l~~~~----~----~~~~~~~~Dv~~~~~~~~   63 (273)
T PRK06182          2 QKKVAL-VTGAS------SGIGKAT---ARRLAAQGYTVYGAARRVDKMEDLA----S----LGVHPLSLDVTDEASIKA   63 (273)
T ss_pred             CCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHH----h----CCCeEEEeeCCCHHHHHH
Confidence            478888 99999      9999999   555667787776  47776654432    2    247889999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++.+.++++|+||||||+..  +..+.+.++++..+++|+.+++.+++.++|.|+++..  ++||++||..+..+. 
T Consensus        64 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~--g~iv~isS~~~~~~~-  140 (273)
T PRK06182         64 AVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS--GRIINISSMGGKIYT-  140 (273)
T ss_pred             HHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC--CEEEEEcchhhcCCC-
Confidence            99999999999999999999863  4567788999999999999999999999999988776  899999998765543 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                                 +       ....|+++|++++.|+++++.++.+.||++++|+||+++ ++.+
T Consensus       141 -----------~-------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~  185 (273)
T PRK06182        141 -----------P-------LGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGD  185 (273)
T ss_pred             -----------C-------CccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccch
Confidence                       2       456799999999999999999999999999999999999 8754

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.96  E-value=7.9e-28  Score=206.74  Aligned_cols=181  Identities=16%  Similarity=0.155  Sum_probs=153.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||.++   +.+|++.|+.|+.  |+.+..         .  ..++.++++|++|.++
T Consensus         5 ~~~~~k~vl-ItGas------~gIG~~i---a~~l~~~G~~v~~~~r~~~~~---------~--~~~~~~~~~D~~~~~~   63 (260)
T PRK06523          5 LELAGKRAL-VTGGT------KGIGAAT---VARLLEAGARVVTTARSRPDD---------L--PEGVEFVAADLTTAEG   63 (260)
T ss_pred             cCCCCCEEE-EECCC------CchhHHH---HHHHHHCCCEEEEEeCChhhh---------c--CCceeEEecCCCCHHH
Confidence            468899999 99999      9999999   6666677877764  664321         1  3468889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++.++++++|+||||||...    +..+.+.++|++.+++|+.+++.++++++|.|.++..  ++||++||..+
T Consensus        64 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~ii~isS~~~  141 (260)
T PRK06523         64 CAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGS--GVIIHVTSIQR  141 (260)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC--cEEEEEecccc
Confidence            99999999999999999999999642    3455788899999999999999999999999987766  89999999876


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      ..+..           .       +...|+++|++++.++++++.++.++||++|+|+||+|+ ++...
T Consensus       142 ~~~~~-----------~-------~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~  192 (260)
T PRK06523        142 RLPLP-----------E-------STTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVA  192 (260)
T ss_pred             cCCCC-----------C-------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHH
Confidence            65421           1       457899999999999999999999999999999999999 87643

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.96  E-value=1.8e-27  Score=203.16  Aligned_cols=228  Identities=15%  Similarity=0.104  Sum_probs=178.0

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      |++++++ ||||+      +|||.++   +.+|++.|+.|+  .|+.+..++..+++.+.  +.++.++++|+++.++++
T Consensus         1 ~~~~~il-ItGas------~~iG~~l---a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~   68 (250)
T TIGR03206         1 LKDKTAI-VTGGG------GGIGGAT---CRRFAEEGAKVAVFDLNREAAEKVAADIRAK--GGNAQAFACDITDRDSVD   68 (250)
T ss_pred             CCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHH
Confidence            4688998 99999      9999999   555667787776  47888888877777654  457899999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.+.++++|++|||||...  +..+.+.++++..+++|+.+++.+++.+.+.|.+.+.  ++||++||..+..+.
T Consensus        69 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~ii~iss~~~~~~~  146 (250)
T TIGR03206        69 TAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGA--GRIVNIASDAARVGS  146 (250)
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--eEEEEECchhhccCC
Confidence            999999999999999999999753  3455677889999999999999999999999987766  899999998776554


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc-CCccchhhhh
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF-GTPVRTFSWI  256 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~-~~~~~~~~~~  256 (292)
                                  +       ....|+.+|+++..+++++++++...||+++.++||.+. ++....... ..+..+...+
T Consensus       147 ------------~-------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~  207 (250)
T TIGR03206       147 ------------S-------GEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAF  207 (250)
T ss_pred             ------------C-------CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHH
Confidence                        2       567899999999999999999998889999999999999 765543210 1111222111


Q ss_pred             -hc-cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 -SR-VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 -~~-~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       .. ......++++.|+      .......+|+.+
T Consensus       208 ~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~  242 (250)
T TIGR03206       208 TRAIPLGRLGQPDDLPGAILFFSSDDASFITGQVL  242 (250)
T ss_pred             HhcCCccCCcCHHHHHHHHHHHcCcccCCCcCcEE
Confidence             01 1223567888886      344555567654

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.96  E-value=2.1e-27  Score=202.12  Aligned_cols=185  Identities=17%  Similarity=0.223  Sum_probs=157.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++++++ ||||+      +|||+++   +..|.++|..|+.  |+.+++++..+++     +.++.++++|+++.+++
T Consensus         3 ~~~~~~vl-ItGa~------g~iG~~l---a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~   67 (245)
T PRK12936          3 DLSGRKAL-VTGAS------GGIGEEI---ARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEV   67 (245)
T ss_pred             CCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHH
Confidence            56789999 99999      9999999   5666677877764  6776766655433     34688899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|++|||||...  +..+.+.++++..+++|+.+++.+++++.+.+.+++.  ++||++||..+..+
T Consensus        68 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~~  145 (245)
T PRK12936         68 KALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRY--GRIINITSVVGVTG  145 (245)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC--CEEEEECCHHhCcC
Confidence            9999999999999999999999863  3456677889999999999999999999998876666  89999999877665


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .            +       ....|+.+|+++..+++.+++++...|+++++++||+++ ++.+.
T Consensus       146 ~------------~-------~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~  192 (245)
T PRK12936        146 N------------P-------GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGK  192 (245)
T ss_pred             C------------C-------CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcc
Confidence            4            2       567899999999999999999998889999999999999 77654

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.96  E-value=1.6e-27  Score=204.48  Aligned_cols=186  Identities=17%  Similarity=0.123  Sum_probs=159.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .+++|+++ ||||+      +|||+++   +..++++|+.|+  .|+.+++++..+++...  +.++.++.+|++|.+++
T Consensus         2 ~l~~k~vl-ItGa~------~~IG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~   69 (258)
T PRK07890          2 LLKGKVVV-VSGVG------PGLGRTL---AVRAARAGADVVLAARTAERLDEVAAEIDDL--GRRALAVPTDITDEDQC   69 (258)
T ss_pred             ccCCCEEE-EECCC------CcHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEecCCCCHHHH
Confidence            35788998 99999      9999999   555667787776  48888888888777654  45789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ..+++++.++++++|++|||||...   +..+.+.++++..+++|+.+++.+++++++.|.++.   ++||++||..+..
T Consensus        70 ~~~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---~~ii~~sS~~~~~  146 (258)
T PRK07890         70 ANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESG---GSIVMINSMVLRH  146 (258)
T ss_pred             HHHHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC---CEEEEEechhhcc
Confidence            9999999999999999999999753   345667899999999999999999999999987653   7999999987665


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      +.            +       +...|+++|+++..++++++.++...||++++++||++. ++..
T Consensus       147 ~~------------~-------~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~  193 (258)
T PRK07890        147 SQ------------P-------KYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLK  193 (258)
T ss_pred             CC------------C-------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHH
Confidence            43            2       567899999999999999999999889999999999999 6653

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.96  E-value=2.3e-27  Score=202.37  Aligned_cols=187  Identities=16%  Similarity=0.109  Sum_probs=154.0

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +|+++ |||++      +|||.++   +.+++++|..|+.   |+.++.++..+++...  +.++.++++|++|.+++.+
T Consensus         2 ~~~~l-VtG~~------~~iG~~~---a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~   69 (248)
T PRK06123          2 RKVMI-ITGAS------RGIGAAT---ALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQ--GGEALAVAADVADEADVLR   69 (248)
T ss_pred             CCEEE-EECCC------chHHHHH---HHHHHHCCCeEEEecCCCHHHHHHHHHHHHhC--CCcEEEEEeccCCHHHHHH
Confidence            46777 99999      9999999   5556677866653   5566677766767554  4578899999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYS  177 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~  177 (292)
                      +++++.++++++|+||||||...   +..+.+.++|+.++++|+.+++.+++.+++.+.++. .+.++||++||.++..+
T Consensus        70 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~  149 (248)
T PRK06123         70 LFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLG  149 (248)
T ss_pred             HHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCC
Confidence            99999999999999999999863   345667789999999999999999999999997542 11278999999877665


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      ..           .       ....|+++|++++++++++++++.+.||+|++++||.+. ++..
T Consensus       150 ~~-----------~-------~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~  196 (248)
T PRK06123        150 SP-----------G-------EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHA  196 (248)
T ss_pred             CC-----------C-------CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhh
Confidence            41           0       134699999999999999999999889999999999999 7654

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.96  E-value=1.7e-27  Score=204.64  Aligned_cols=186  Identities=19%  Similarity=0.216  Sum_probs=157.3

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|+++ ||||+      +|||.++   +..|++.|+.|+  .|+..+.++..+++....+..++.++++|+++.+++.++
T Consensus         2 ~k~il-ItG~~------~~IG~~l---a~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~   71 (259)
T PRK12384          2 NQVAV-VIGGG------QTLGAFL---CHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLAL   71 (259)
T ss_pred             CCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHH
Confidence            57888 99999      9999999   555666776665  488888888877776654335789999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccccC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++++.+.++++|++|||||...  +..+.+.++|+..+++|+.+++++++++++.|.++. .  ++||++||..+..+. 
T Consensus        72 ~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~--~~iv~~ss~~~~~~~-  148 (259)
T PRK12384         72 SRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQ--GRIIQINSKSGKVGS-  148 (259)
T ss_pred             HHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC--cEEEEecCcccccCC-
Confidence            9999999999999999999763  346678889999999999999999999999998765 5  899999998765543 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCcc-c-cccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWK-I-TVSK  241 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v-~-~~~~  241 (292)
                                 +       ....|++||++++.+++++++++.++||+|++|+||.+ . ++..
T Consensus       149 -----------~-------~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~  194 (259)
T PRK12384        149 -----------K-------HNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ  194 (259)
T ss_pred             -----------C-------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh
Confidence                       2       45689999999999999999999989999999999975 4 5543

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.96  E-value=4e-27  Score=199.90  Aligned_cols=189  Identities=16%  Similarity=0.196  Sum_probs=162.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++++++ |||++      +|||+.+   +.+|++.|+.|+  .|+.++.++..+++...  +.++.++++|++++++
T Consensus         3 ~~~~~~~vl-VtG~s------g~iG~~l---~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   70 (239)
T PRK07666          3 QSLQGKNAL-ITGAG------RGIGRAV---AIALAKEGVNVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEE   70 (239)
T ss_pred             ccCCCCEEE-EEcCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHH
Confidence            346788988 99999      9999999   555666777765  48888888888777544  4588999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.++++++|++|||||...  ...+.+.+++++.+++|+.+++.+++++.|.+.++..  ++||++||..+..
T Consensus        71 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~ss~~~~~  148 (239)
T PRK07666         71 VTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQS--GDIINISSTAGQK  148 (239)
T ss_pred             HHHHHHHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--cEEEEEcchhhcc
Confidence            99999999999999999999999863  3456678889999999999999999999999987766  8999999987766


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       +...|+.+|+++..+++.+++++.+.||+++.|+||.+. ++...
T Consensus       149 ~~------------~-------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~  196 (239)
T PRK07666        149 GA------------A-------VTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVD  196 (239)
T ss_pred             CC------------C-------CCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhh
Confidence            54            2       567899999999999999999999889999999999999 76554

>PRK06194 hypothetical protein; Provisional

Probab=99.96  E-value=2e-27  Score=207.18  Aligned_cols=190  Identities=17%  Similarity=0.151  Sum_probs=160.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++|+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+.+++..+++...  +.++.++++|++|.+++
T Consensus         3 ~~~~k~vl-VtGas------ggIG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~   70 (287)
T PRK06194          3 DFAGKVAV-ITGAA------SGFGLAF---ARIGAALGMKLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQV   70 (287)
T ss_pred             CCCCCEEE-EeCCc------cHHHHHH---HHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHH
Confidence            46788998 99999      9999999   555667787765  48888888888877654  45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCC----CcEEEEEcCcc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL----FARVVVVSSES  173 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~----~~~iV~vsS~~  173 (292)
                      +++++.+.+.++++|+||||||...  +..+.+.++++..+++|+.|++.++++++|.|.++..+    .++||++||.+
T Consensus        71 ~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~  150 (287)
T PRK06194         71 EALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMA  150 (287)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChh
Confidence            9999999999999999999999864  34567888999999999999999999999999765421    16999999988


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC--CCeEEEEecCCccc-ccccc
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK--YKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +..+.            +       +...|+++|++++.++++++.++..  .+|++++++||++. ++...
T Consensus       151 ~~~~~------------~-------~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~  203 (287)
T PRK06194        151 GLLAP------------P-------AMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQS  203 (287)
T ss_pred             hccCC------------C-------CCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccccc
Confidence            77654            2       5678999999999999999999863  46999999999999 77654

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.96  E-value=4.5e-27  Score=201.90  Aligned_cols=185  Identities=18%  Similarity=0.146  Sum_probs=154.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ....+|+++ ||||+      +|||+.+   +..+++.|+.|+.   ++.+.++++.+++...  +.++.++++|++|.+
T Consensus         5 ~~~~~k~vl-ItGas------~giG~~l---a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~   72 (258)
T PRK09134          5 SMAAPRAAL-VTGAA------RRIGRAI---ALDLAAHGFDVAVHYNRSRDEAEALAAEIRAL--GRRAVALQADLADEA   72 (258)
T ss_pred             cCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHH
Confidence            445788888 99999      9999999   5556677777653   4566777777777654  457889999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++.++++++.+.++++|+||||||...  +..+.+.+++++.+++|+.+++.+++++.+.+.+...  ++||+++|..+.
T Consensus        73 ~~~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~~s~~~~  150 (258)
T PRK09134         73 EVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADAR--GLVVNMIDQRVW  150 (258)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--ceEEEECchhhc
Confidence            999999999998999999999999863  4556788899999999999999999999999987655  899999887554


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      .+.            +       ....|+.||++++.+++++++++.+. |+|++++||++. ..
T Consensus       151 ~~~------------p-------~~~~Y~~sK~a~~~~~~~la~~~~~~-i~v~~i~PG~v~t~~  195 (258)
T PRK09134        151 NLN------------P-------DFLSYTLSKAALWTATRTLAQALAPR-IRVNAIGPGPTLPSG  195 (258)
T ss_pred             CCC------------C-------CchHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeecccccCCc
Confidence            332            2       45689999999999999999999765 999999999998 54

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.96  E-value=3.8e-27  Score=203.45  Aligned_cols=182  Identities=13%  Similarity=0.106  Sum_probs=143.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH---
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV---   99 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v---   99 (292)
                      ++++ ||||+      +|||+++   +.++.+.|+.|+.   |+.+++++..+++.... +.++.++++|++|.+++   
T Consensus         2 ~~~l-ITGas------~gIG~~~---a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~~~~~   70 (267)
T TIGR02685         2 PAAV-VTGAA------KRIGSSI---AVALHQEGYRVVLHYHRSAAAASTLAAELNARR-PNSAVTCQADLSNSATLFSR   70 (267)
T ss_pred             CEEE-EeCCC------CcHHHHH---HHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhcc-CCceEEEEccCCCchhhHHH
Confidence            4677 99999      9999999   6666778888764   45677877777775443 34677899999999866   


Q ss_pred             -HHHHHHHHHhCCCccEEEEcccccC--CCCCCCC-----------cchhhhhhhhhhHHHHHHHHHHHHHHhcC----C
Q psy4251         100 -KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTE-----------DGFETTFQVNHLAHFYLTLQLENALIKGA----K  161 (292)
Q Consensus       100 -~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~-----------~~~~~~~~vN~~~~~~l~~~ll~~l~~~~----~  161 (292)
                       +++++++.+.++++|+||||||...  +..+.+.           +++++.+++|+.+++.++++++|.|++..    .
T Consensus        71 ~~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~  150 (267)
T TIGR02685        71 CEAIIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRS  150 (267)
T ss_pred             HHHHHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCC
Confidence             4555566667889999999999863  2222222           24889999999999999999999986431    0


Q ss_pred             CCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         162 LFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       162 ~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..++||+++|..+..+.            +       +...|++||+++++|++++++|+.+.||+|++|+||++.
T Consensus       151 ~~~~iv~~~s~~~~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~  207 (267)
T TIGR02685       151 TNLSIVNLCDAMTDQPL------------L-------GFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSL  207 (267)
T ss_pred             CCeEEEEehhhhccCCC------------c-------ccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCcc
Confidence            11689999998765443            2       667899999999999999999999999999999999986

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.96  E-value=1.6e-27  Score=204.65  Aligned_cols=185  Identities=15%  Similarity=0.174  Sum_probs=150.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--Ec----CHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QN----CWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r----~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      .+++||+++ ||||+      +|||+++|+   .|+..|+.++  .+    +.+..++..+++...  +.++.++++|++
T Consensus         4 ~~l~~k~vl-ItGa~------~gIG~~~a~---~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~   71 (257)
T PRK12744          4 HSLKGKVVL-IAGGA------KNLGGLIAR---DLAAQGAKAVAIHYNSAASKADAEETVAAVKAA--GAKAVAFQADLT   71 (257)
T ss_pred             CCCCCcEEE-EECCC------chHHHHHHH---HHHHCCCcEEEEecCCccchHHHHHHHHHHHHh--CCcEEEEecCcC
Confidence            357789999 99999      999999944   4566776633  22    345566666666554  457889999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE-cC
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV-SS  171 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v-sS  171 (292)
                      ++++++++++++.++++++|++|||||...  +..+.+.+++++++++|+.+++.++++++|.|.+.    ++|+++ +|
T Consensus        72 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~----~~iv~~~ss  147 (257)
T PRK12744         72 TAAAVEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDN----GKIVTLVTS  147 (257)
T ss_pred             CHHHHHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccC----CCEEEEecc
Confidence            999999999999999999999999999853  45567888999999999999999999999998643    677776 44


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      ..+...             +       ....|++||++++.|++++++++.++||+|++++||++. ++..
T Consensus       148 ~~~~~~-------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~  198 (257)
T PRK12744        148 LLGAFT-------------P-------FYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFY  198 (257)
T ss_pred             hhcccC-------------C-------CcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhc
Confidence            433322             2       567899999999999999999999899999999999999 7654

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.96  E-value=2.7e-27  Score=200.91  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=168.7

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      |||||+      +|||+++   +..|+++|+.|+.   ++.+..++..+++++.  +.++.++++|++|.+++.++++++
T Consensus         2 lItGas------~giG~~~---a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~~~~~   70 (239)
T TIGR01831         2 LVTGAS------RGIGRAI---ANRLAADGFEICVHYHSGRSDAESVVSAIQAQ--GGNARLLQFDVADRVACRTLLEAD   70 (239)
T ss_pred             EEeCCC------chHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCeEEEEEccCCCHHHHHHHHHHH
Confidence            499999      9999999   5556677877653   3466777777777665  457999999999999999999999


Q ss_pred             HHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHH-HHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         107 QKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLE-NALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       107 ~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll-~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      .+.++++|++|||||...  +..+.+.++++.++++|+.+++.+++.++ |.+.+++.  ++||++||.++..+.     
T Consensus        71 ~~~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--~~iv~vsS~~~~~~~-----  143 (239)
T TIGR01831        71 IAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQG--GRIITLASVSGVMGN-----  143 (239)
T ss_pred             HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCC--eEEEEEcchhhccCC-----
Confidence            999999999999999864  34566788999999999999999999875 55555555  899999998877654     


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhccccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVRPV  262 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~~~  262 (292)
                             +       +...|+++|+++..++++++.++..+||++++|+||+++ ++.+.....  ........  ....
T Consensus       144 -------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~--~~~~  205 (239)
T TIGR01831       144 -------R-------GQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEVEHD--LDEALKTV--PMNR  205 (239)
T ss_pred             -------C-------CCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhhhHH--HHHHHhcC--CCCC
Confidence                   2       567899999999999999999999889999999999999 887654221  11111111  1123


Q ss_pred             cCCHHHhhc------ccccCCCCCcc
Q psy4251         263 TNFQVDLTG------TAEKVGLSGLP  282 (292)
Q Consensus       263 ~~~~~~~a~------~~~~~~~~G~~  282 (292)
                      +.+|++.++      .+.....+|..
T Consensus       206 ~~~~~~va~~~~~l~~~~~~~~~g~~  231 (239)
T TIGR01831       206 MGQPAEVASLAGFLMSDGASYVTRQV  231 (239)
T ss_pred             CCCHHHHHHHHHHHcCchhcCccCCE
Confidence            568888887      33344555543

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.96  E-value=1e-27  Score=206.77  Aligned_cols=175  Identities=19%  Similarity=0.180  Sum_probs=150.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++|+++ ||||+      +|||+++   +..|++.|+.|+.  ++.++.+           ..++.++++|+++.++
T Consensus         5 ~~l~~k~vl-ItG~s------~gIG~~l---a~~l~~~G~~v~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~   63 (266)
T PRK06171          5 LNLQGKIII-VTGGS------SGIGLAI---VKELLANGANVVNADIHGGDGQ-----------HENYQFVPTDVSSAEE   63 (266)
T ss_pred             ccCCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCccccc-----------cCceEEEEccCCCHHH
Confidence            357899999 99999      9999999   6667788888775  4433221           2367889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCC-----------CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEE
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGL-----------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVV  167 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~-----------~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV  167 (292)
                      ++++++++.++++++|++|||||...+           ..+.+.++|++.+++|+.+++.++++++|+|.+++.  ++||
T Consensus        64 ~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g~iv  141 (266)
T PRK06171         64 VNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHD--GVIV  141 (266)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCC--cEEE
Confidence            999999999999999999999997532           134678899999999999999999999999987766  8999


Q ss_pred             EEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         168 VVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       168 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ++||..+..+.            +       +...|+++|++++.++++++.++.++||+||+|+||++.
T Consensus       142 ~isS~~~~~~~------------~-------~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~  192 (266)
T PRK06171        142 NMSSEAGLEGS------------E-------GQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE  192 (266)
T ss_pred             EEccccccCCC------------C-------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence            99998776554            2       567899999999999999999999999999999999996

>KOG1209|consensus

Probab=99.96  E-value=3.8e-28  Score=192.96  Aligned_cols=180  Identities=18%  Similarity=0.162  Sum_probs=154.9

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      .|.++ |||++     .+|||.++   +.++.+.|+.|+.  |+.+...++..    .   ..+..+.+|+++++++.++
T Consensus         7 ~k~Vl-Itgcs-----~GGIG~al---a~ef~~~G~~V~AtaR~~e~M~~L~~----~---~gl~~~kLDV~~~~~V~~v   70 (289)
T KOG1209|consen    7 PKKVL-ITGCS-----SGGIGYAL---AKEFARNGYLVYATARRLEPMAQLAI----Q---FGLKPYKLDVSKPEEVVTV   70 (289)
T ss_pred             CCeEE-EeecC-----CcchhHHH---HHHHHhCCeEEEEEccccchHhhHHH----h---hCCeeEEeccCChHHHHHH
Confidence            45666 77776     39999999   7888899999985  66555444433    2   2478899999999999999


Q ss_pred             HHHHHH-hCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         103 AEEYQK-KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       103 ~~~~~~-~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      ..++++ .+|++|+|+||||..  .|..+.+.+..+++|.+|++|++.+++++...+.+. +  |.||+++|.++..+. 
T Consensus        71 ~~evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~lika-K--GtIVnvgSl~~~vpf-  146 (289)
T KOG1209|consen   71 SGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKA-K--GTIVNVGSLAGVVPF-  146 (289)
T ss_pred             HHHHhhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHc-c--ceEEEecceeEEecc-
Confidence            999998 788999999999986  577888999999999999999999999999666554 3  999999999988775 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                 +       -...|.+||+|++.+++.|.-|+++.||+|..+.||.|. ++.++
T Consensus       147 -----------p-------f~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~Ia~k  192 (289)
T KOG1209|consen  147 -----------P-------FGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATDIADK  192 (289)
T ss_pred             -----------c-------hhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceecccccC
Confidence                       2       457899999999999999999999999999999999999 88776

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.96  E-value=3.7e-27  Score=202.07  Aligned_cols=185  Identities=12%  Similarity=0.107  Sum_probs=154.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .++||+++ ||||+      +|||+++   +.+++++|+.|+  .|+.++.++..+++.       ..++++|+++++++
T Consensus         4 ~~~~~~vl-ItGas------ggIG~~~---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-------~~~~~~D~~~~~~~   66 (255)
T PRK06057          4 RLAGRVAV-ITGGG------SGIGLAT---ARRLAAEGATVVVGDIDPEAGKAAADEVG-------GLFVPTDVTDEDAV   66 (255)
T ss_pred             cCCCCEEE-EECCC------chHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHcC-------CcEEEeeCCCHHHH
Confidence            37899999 99999      9999999   556667787765  477776665554431       25789999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++.+.++++|++|||||...    +..+.+.++++..+++|+.+++++++.++|.|.++..  ++||++||..+.
T Consensus        67 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~--g~iv~~sS~~~~  144 (255)
T PRK06057         67 NALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGK--GSIINTASFVAV  144 (255)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCC--cEEEEEcchhhc
Confidence            9999999998899999999999753    2345677889999999999999999999999987666  899999998665


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+..           .       +...|+.+|+++..++++++.++..+||+|++|+||+++ ++....
T Consensus       145 ~g~~-----------~-------~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~  195 (255)
T PRK06057        145 MGSA-----------T-------SQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQEL  195 (255)
T ss_pred             cCCC-----------C-------CCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhh
Confidence            5431           1       456799999999999999999999889999999999999 876543

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.96  E-value=5e-27  Score=203.21  Aligned_cols=185  Identities=15%  Similarity=0.132  Sum_probs=155.9

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +..+++.|+.|+  .|+.+.+++..+++.... +..+.++++|+++++++.+++
T Consensus         1 k~vl-ItGas------~giG~~l---a~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~   69 (272)
T PRK07832          1 KRCF-VTGAA------SGIGRAT---ALRLAAQGAELFLTDRDADGLAQTVADARALG-GTVPEHRALDISDYDAVAAFA   69 (272)
T ss_pred             CEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEeeCCCHHHHHHHH
Confidence            4677 99999      9999999   455566776665  488888888888886542 334566899999999999999


Q ss_pred             HHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccccCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +++.+.++++|+||||||..  .+..+.+.++++..+++|+.+++.++++++|.|.+++ .  ++||++||..+..+.  
T Consensus        70 ~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~--g~ii~isS~~~~~~~--  145 (272)
T PRK07832         70 ADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRG--GHLVNVSSAAGLVAL--  145 (272)
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC--cEEEEEccccccCCC--
Confidence            99999999999999999975  3456778899999999999999999999999997643 4  899999998765443  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                +       ....|+++|+++.+|+++++.++.+.||+|+.|+||.++ ++.+.
T Consensus       146 ----------~-------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~  191 (272)
T PRK07832        146 ----------P-------WHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNT  191 (272)
T ss_pred             ----------C-------CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhc
Confidence                      2       566899999999999999999999889999999999999 87654

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.96  E-value=4.6e-27  Score=202.05  Aligned_cols=182  Identities=14%  Similarity=0.085  Sum_probs=156.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +..+++.|+.|+  .|+.+++++..+++.    +.++.++++|+++.+++.+++
T Consensus         2 k~vl-ItGas------g~iG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~   67 (260)
T PRK08267          2 KSIF-ITGAA------SGIGRAT---ALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAAL   67 (260)
T ss_pred             cEEE-EeCCC------chHHHHH---HHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHH
Confidence            5677 99999      9999999   555667787776  488887777666543    457899999999999999999


Q ss_pred             HHHHHh-CCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         104 EEYQKK-FRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       104 ~~~~~~-~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +.+.++ .+++|+||||||...  ...+.+.++++.++++|+.+++.+++++.+.|++++.  ++||++||..+..+.  
T Consensus        68 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~isS~~~~~~~--  143 (260)
T PRK08267         68 ADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPG--ARVINTSSASAIYGQ--  143 (260)
T ss_pred             HHHHHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--CEEEEeCchhhCcCC--
Confidence            998876 789999999999864  3456678899999999999999999999999988777  999999998777654  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                +       ....|+.||+++++++++++.++.+.||++++|+||+++ ++.+.
T Consensus       144 ----------~-------~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~  189 (260)
T PRK08267        144 ----------P-------GLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDG  189 (260)
T ss_pred             ----------C-------CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCccccc
Confidence                      2       567899999999999999999999889999999999999 87664

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.96  E-value=7.1e-27  Score=202.62  Aligned_cols=190  Identities=17%  Similarity=0.066  Sum_probs=161.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++|+++ |||++      +|||.++   +..|.++|+.|+  .|+.++.++..+++.....+.++.++++|++|++++
T Consensus         4 ~~~~k~vl-ItGas------g~IG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~   73 (276)
T PRK05875          4 SFQDRTYL-VTGGG------SGIGKGV---AAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQV   73 (276)
T ss_pred             CCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHH
Confidence            46789999 99999      9999999   555667777766  488877777777776543235788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      .++++++.++++++|++|||||...   +..+.+.++++.++++|+.+++.+++++++.+.+.+.  ++||++||..+..
T Consensus        74 ~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g~iv~~sS~~~~~  151 (276)
T PRK05875         74 ARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGG--GSFVGISSIAASN  151 (276)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEEechhhcC
Confidence            9999999999999999999999752   3456678889999999999999999999999987666  8999999987654


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       ....|+.+|++++.+++++++++...+|+++.|+||+++ ++...
T Consensus       152 ~~------------~-------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~  199 (276)
T PRK05875        152 TH------------R-------WFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAP  199 (276)
T ss_pred             CC------------C-------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccc
Confidence            43            2       567899999999999999999999899999999999999 77654

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.96  E-value=3.9e-27  Score=200.23  Aligned_cols=185  Identities=16%  Similarity=0.116  Sum_probs=159.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++|+++ |||++      +|||+.+   +.+|+++|..|+  .|+.++.++..+++.+.  +.++.++++|+++.+++.+
T Consensus         5 ~~k~vl-ItG~s------g~iG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~   72 (241)
T PRK07454          5 SMPRAL-ITGAS------SGIGKAT---ALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAP   72 (241)
T ss_pred             CCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHH
Confidence            357788 99999      9999999   555667777766  48888888887777654  4578899999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++.++++++|++|||||...  +..+.+.++++..+++|+.+++.+++.++|.|.+++.  ++||++||..+..+. 
T Consensus        73 ~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~isS~~~~~~~-  149 (241)
T PRK07454         73 GIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGG--GLIINVSSIAARNAF-  149 (241)
T ss_pred             HHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC--cEEEEEccHHhCcCC-
Confidence            99999999999999999999863  3456677899999999999999999999999987766  899999998766543 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                                 +       +...|+.+|++++.+++++++++.+.||++++|+||++. ++..
T Consensus       150 -----------~-------~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~  194 (241)
T PRK07454        150 -----------P-------QWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWD  194 (241)
T ss_pred             -----------C-------CccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccc
Confidence                       2       567899999999999999999998889999999999999 8754

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.96  E-value=7.4e-27  Score=199.24  Aligned_cols=220  Identities=17%  Similarity=0.154  Sum_probs=175.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCC--Ch
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLC--RL   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls--~~   96 (292)
                      ..+++|+++ |||++      +|||.++++   .|++.|+.|+  .|+.+++++..+++.+.. ..++.++++|++  +.
T Consensus         8 ~~~~~k~vl-ItG~~------g~iG~~la~---~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~   76 (247)
T PRK08945          8 DLLKDRIIL-VTGAG------DGIGREAAL---TYARHGATVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATP   76 (247)
T ss_pred             cccCCCEEE-EeCCC------chHHHHHHH---HHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCH
Confidence            357899999 99999      999999955   4556676665  488888888888876543 346777888886  78


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      ++++++++.+.+.++++|+||||||...   +..+.+.+++++.+++|+.+++.++++++|.|.+++.  ++||++||..
T Consensus        77 ~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~--~~iv~~ss~~  154 (247)
T PRK08945         77 QNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPA--ASLVFTSSSV  154 (247)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC--CEEEEEccHh
Confidence            9999999999999999999999999753   3556778899999999999999999999999988777  8999999987


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      +..+.            +       ....|++||++++.+++++++++...||++++++||.+. ++........     
T Consensus       155 ~~~~~------------~-------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~~~~-----  210 (247)
T PRK08945        155 GRQGR------------A-------NWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAFPGE-----  210 (247)
T ss_pred             hcCCC------------C-------CCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhcCcc-----
Confidence            76554            2       567899999999999999999999999999999999999 7654432110     


Q ss_pred             hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                            ...-..+|++.++      ......++|+.+
T Consensus       211 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  241 (247)
T PRK08945        211 ------DPQKLKTPEDIMPLYLYLMGDDSRRKNGQSF  241 (247)
T ss_pred             ------cccCCCCHHHHHHHHHHHhCccccccCCeEE
Confidence                  0112457888776      344446677654

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.95  E-value=2.6e-27  Score=200.66  Aligned_cols=176  Identities=14%  Similarity=0.107  Sum_probs=146.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+..   .+++.+.    .+.++++|++|.++++++
T Consensus         2 ~k~vl-ItGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~---~~~~~~~----~~~~~~~D~~~~~~~~~~   64 (236)
T PRK06483          2 PAPIL-ITGAG------QRIGLAL---AWHLLAQGQPVIVSYRTHYPA---IDGLRQA----GAQCIQADFSTNAGIMAF   64 (236)
T ss_pred             CceEE-EECCC------ChHHHHH---HHHHHHCCCeEEEEeCCchhH---HHHHHHc----CCEEEEcCCCCHHHHHHH
Confidence            46788 99999      9999999   5556677877764  665433   3334332    267889999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC--CCCcEEEEEcCccccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA--KLFARVVVVSSESHRYSY  178 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~--~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++.+.++++|++|||||...  ...+.+.++|++++++|+.+++.+++.++|.|.++.  .  ++||++||..+..+.
T Consensus        65 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~--g~iv~~ss~~~~~~~  142 (236)
T PRK06483         65 IDELKQHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAA--SDIIHITDYVVEKGS  142 (236)
T ss_pred             HHHHHhhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCC--ceEEEEcchhhccCC
Confidence            9999999999999999999753  345567889999999999999999999999998765  4  899999998765443


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                                  +       ....|++||++++.|++++++++.+ +|+||+|+||++. +.
T Consensus       143 ------------~-------~~~~Y~asKaal~~l~~~~a~e~~~-~irvn~v~Pg~~~~~~  184 (236)
T PRK06483        143 ------------D-------KHIAYAASKAALDNMTLSFAAKLAP-EVKVNSIAPALILFNE  184 (236)
T ss_pred             ------------C-------CCccHHHHHHHHHHHHHHHHHHHCC-CcEEEEEccCceecCC
Confidence                        2       5678999999999999999999987 5999999999997 53

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.95  E-value=4e-27  Score=200.90  Aligned_cols=183  Identities=16%  Similarity=0.170  Sum_probs=155.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++.||+++ ||||+      +|||.++   +.+|+++|+.|+.  |+.+++++..+++     +.++.++++|++|.+++
T Consensus         3 ~~~~k~vl-ItGas------g~iG~~l---a~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~   67 (249)
T PRK06500          3 RLQGKTAL-ITGGT------SGIGLET---ARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQ   67 (249)
T ss_pred             CCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHH
Confidence            46789988 99999      9999999   6666677877764  7776666555444     45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      ..+++.+.+.++++|++|||||...  +..+.+.+++++++++|+.+++.++++++|+|.+  .  +++|+++|..+..+
T Consensus        68 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~--~~~i~~~S~~~~~~  143 (249)
T PRK06500         68 KALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLAN--P--ASIVLNGSINAHIG  143 (249)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--C--CEEEEEechHhccC
Confidence            9999999999999999999999763  3456788899999999999999999999999864  3  78999999876655


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .            +       ....|+.+|+++++++++++.++.+.||++++++||.+. ++.+.
T Consensus       144 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~  190 (249)
T PRK06500        144 M------------P-------NSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGK  190 (249)
T ss_pred             C------------C-------CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHh
Confidence            4            2       567899999999999999999998889999999999999 87654

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.95  E-value=4.8e-27  Score=203.88  Aligned_cols=182  Identities=14%  Similarity=0.091  Sum_probs=154.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+++++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++...+    .. +.++..+++|++|.+++.+
T Consensus         3 ~~~~vl-VtGas------ggiG~~l---a~~l~~~G~~V~~~~r~~~~~~~l~~----~~-~~~~~~~~~D~~d~~~~~~   67 (277)
T PRK06180          3 SMKTWL-ITGVS------SGFGRAL---AQAALAAGHRVVGTVRSEAARADFEA----LH-PDRALARLLDVTDFDAIDA   67 (277)
T ss_pred             CCCEEE-EecCC------ChHHHHH---HHHHHhCcCEEEEEeCCHHHHHHHHh----hc-CCCeeEEEccCCCHHHHHH
Confidence            367788 99999      9999999   555667777766  477766554333    22 3478889999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++.+.++++|+||||||...  +..+.+.+++++.+++|+.+++.++++++|++++++.  ++||++||.++..+. 
T Consensus        68 ~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~--~~iv~iSS~~~~~~~-  144 (277)
T PRK06180         68 VVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRR--GHIVNITSMGGLITM-  144 (277)
T ss_pred             HHHHHHHHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC--CEEEEEecccccCCC-
Confidence            99999999999999999999863  4566778889999999999999999999999987776  899999998776654 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                                 +       +...|+++|++++.++++++.++...|+++++++||.+. ++..
T Consensus       145 -----------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~  189 (277)
T PRK06180        145 -----------P-------GIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAG  189 (277)
T ss_pred             -----------C-------CcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccc
Confidence                       2       678999999999999999999998889999999999998 7644

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.95  E-value=4.6e-27  Score=202.00  Aligned_cols=188  Identities=18%  Similarity=0.144  Sum_probs=161.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||..+   +..|+++|+.|+  .|++++.++..+++.+.  +.++.++++|+++.+++
T Consensus         4 ~~~~~~vl-ItGas------g~iG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~   71 (262)
T PRK13394          4 NLNGKTAV-VTGAA------SGIGKEI---ALELARAGAAVAIADLNQDGANAVADEINKA--GGKAIGVAMDVTNEDAV   71 (262)
T ss_pred             cCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCeEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCCCHHHH
Confidence            46789999 99999      9999999   555667777765  58888888888888665  55788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHH-HhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENAL-IKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l-~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++.+.++++|+||||||...  +..+.+.++++..+++|+.+++.+++.+++.+ ++.+.  ++||++||..+..
T Consensus        72 ~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~--~~iv~~ss~~~~~  149 (262)
T PRK13394         72 NAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRG--GVVIYMGSVHSHE  149 (262)
T ss_pred             HHHHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCC--cEEEEEcchhhcC
Confidence            9999999999999999999999863  33456778899999999999999999999999 65556  8999999986654


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       +...|+.+|+++..++++++.++.+.||++++++||.+. ++.+.
T Consensus       150 ~~------------~-------~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~  197 (262)
T PRK13394        150 AS------------P-------LKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDK  197 (262)
T ss_pred             CC------------C-------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhh
Confidence            43            2       567899999999999999999998889999999999999 76543

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.95  E-value=5.7e-27  Score=226.52  Aligned_cols=190  Identities=17%  Similarity=0.158  Sum_probs=163.3

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++...  +.++.++++|++|.+
T Consensus       366 ~~~~~~k~vl-ItGas------~giG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~  433 (657)
T PRK07201        366 RGPLVGKVVL-ITGAS------SGIGRAT---AIKVAEAGATVFLVARNGEALDELVAEIRAK--GGTAHAYTCDLTDSA  433 (657)
T ss_pred             ccCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEecCCCHH
Confidence            3568899999 99999      9999999   555667777766  48888888888888665  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCC--CCCC--CCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGL--GFSH--TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~--~~~~--~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      ++.++++++.++++++|++|||||....  ..+.  +.++++..+++|+.+++.+++.++|.|++++.  ++||++||.+
T Consensus       434 ~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~  511 (657)
T PRK07201        434 AVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRF--GHVVNVSSIG  511 (657)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--CEEEEECChh
Confidence            9999999999999999999999997532  1221  24679999999999999999999999988777  8999999987


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +..+.            +       ....|++||++++.|+++++.++.+.||+|++|+||+|+ ++...
T Consensus       512 ~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~  562 (657)
T PRK07201        512 VQTNA------------P-------RFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAP  562 (657)
T ss_pred             hcCCC------------C-------CcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCc
Confidence            76544            2       567899999999999999999999889999999999999 88754

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.95  E-value=3.5e-27  Score=203.89  Aligned_cols=179  Identities=18%  Similarity=0.155  Sum_probs=152.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++++++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++.+.          ..++.++++|++|++++++
T Consensus         3 ~~~~vl-VtGas------g~iG~~~---a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~   62 (270)
T PRK06179          3 NSKVAL-VTGAS------SGIGRAT---AEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQA   62 (270)
T ss_pred             CCCEEE-EecCC------CHHHHHH---HHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHH
Confidence            356777 99999      9999999   5556677877764  66544321          2367889999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++.++++++|+||||||+..  +..+.+.++++..+++|+.|++.+++.++|.|++++.  ++||++||..+..+. 
T Consensus        63 ~~~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--~~iv~isS~~~~~~~-  139 (270)
T PRK06179         63 AVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGS--GRIINISSVLGFLPA-  139 (270)
T ss_pred             HHHHHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--ceEEEECCccccCCC-
Confidence            99999999999999999999863  4556688899999999999999999999999988777  999999998776554 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                                 +       ....|+++|++++.++++++.++.+.||++++|+||++. ++..+.
T Consensus       140 -----------~-------~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~  186 (270)
T PRK06179        140 -----------P-------YMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANA  186 (270)
T ss_pred             -----------C-------CccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCccccccccc
Confidence                       2       567899999999999999999999999999999999999 876653

>PRK07069 short chain dehydrogenase; Validated

Probab=99.95  E-value=1.4e-26  Score=197.84  Aligned_cols=184  Identities=17%  Similarity=0.091  Sum_probs=154.9

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      ++ ||||+      +|||+++   +..|+++|+.|+.  |+ .+++++..+++.+......+..+++|++|.+++.++++
T Consensus         2 il-VtG~~------~~iG~~~---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   71 (251)
T PRK07069          2 AF-ITGAA------GGLGRAI---ARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLA   71 (251)
T ss_pred             EE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHH
Confidence            55 99999      9999999   5556677877764  66 67777777777654323356678999999999999999


Q ss_pred             HHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++.+.++++|++|||||...  +..+.+.+++++.+++|+.+++.+++.++|.|.+++.  ++||++||..+..+.    
T Consensus        72 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~ii~~ss~~~~~~~----  145 (251)
T PRK07069         72 QAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP--ASIVNISSVAAFKAE----  145 (251)
T ss_pred             HHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC--cEEEEecChhhccCC----
Confidence            99999999999999999863  3556678899999999999999999999999987766  899999998776654    


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCC--eEEEEecCCccc-ccccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYK--IALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~g--i~v~~v~PG~v~-~~~~~  242 (292)
                              +       +...|+++|+++..++++++.++..++  |+|+.|+||+++ ++...
T Consensus       146 --------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~  193 (251)
T PRK07069        146 --------P-------DYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDP  193 (251)
T ss_pred             --------C-------CCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhH
Confidence                    2       567899999999999999999997664  999999999999 87754

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.95  E-value=8.1e-27  Score=202.22  Aligned_cols=182  Identities=16%  Similarity=0.087  Sum_probs=155.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+|+++ ||||+      +|||+.+   +.+++++|+.|+  .|+.+++++..+++     +.++.++++|++|.+++.+
T Consensus         2 ~~k~vl-ItGas------g~iG~~~---a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~   66 (275)
T PRK08263          2 MEKVWF-ITGAS------RGFGRAW---TEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFA   66 (275)
T ss_pred             CCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHH
Confidence            467788 99999      9999999   555667777665  47777766554433     3467889999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++.+.+.++++|++|||||...  +..+.+.+++++.+++|+.+++.+++.++|.|++++.  ++||++||..+..+. 
T Consensus        67 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~vsS~~~~~~~-  143 (275)
T PRK08263         67 AVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRS--GHIIQISSIGGISAF-  143 (275)
T ss_pred             HHHHHHHHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CEEEEEcChhhcCCC-
Confidence            99999999999999999999863  4566788999999999999999999999999988766  899999998777654 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                                 +       ....|+.+|++++.+++.++.++.+.||+++.++||++. ++..
T Consensus       144 -----------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~  188 (275)
T PRK08263        144 -----------P-------MSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAG  188 (275)
T ss_pred             -----------C-------CccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccc
Confidence                       2       567899999999999999999999889999999999999 7764

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.95  E-value=7e-27  Score=196.52  Aligned_cols=194  Identities=13%  Similarity=0.094  Sum_probs=150.3

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      +|||+++   +..+++.|+.|+  .|+.+++++..+++       .+.++++|+++.++++++++
T Consensus         2 ~vl-ItGas------~giG~~i---a~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~   64 (223)
T PRK05884          2 EVL-VTGGD------TDLGRTI---AEGFRNDGHKVTLVGARRDDLEVAAKEL-------DVDAIVCDNTDPASLEEARG   64 (223)
T ss_pred             eEE-EEeCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHhc-------cCcEEecCCCCHHHHHHHHH
Confidence            366 99999      9999999   555667777765  48887776665543       35678999999999999988


Q ss_pred             HHHHhCCCccEEEEcccccC----C----CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         105 EYQKKFRSLNILVLNAGVFG----L----GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~----~----~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++.+   ++|++|||||...    +    ..+ +.++|++++++|+.++++++++++|.|.+  .  |+||++||..   
T Consensus        65 ~~~~---~id~lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~--g~Iv~isS~~---  133 (223)
T PRK05884         65 LFPH---HLDTIVNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRS--G--GSIISVVPEN---  133 (223)
T ss_pred             HHhh---cCcEEEECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C--CeEEEEecCC---
Confidence            8753   6999999998531    1    112 46789999999999999999999999964  4  8999999965   


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      .             +       ....|++||+++.+|+++++.++.++||+||+|+||+++ ++.+....          
T Consensus       134 ~-------------~-------~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~~~~~~----------  183 (223)
T PRK05884        134 P-------------P-------AGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGYDGLSR----------  183 (223)
T ss_pred             C-------------C-------CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhhhhccC----------
Confidence            1             1       456899999999999999999999999999999999999 76543211          


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                         . + ..++++.+.      ++.....+|+.+
T Consensus       184 ---~-p-~~~~~~ia~~~~~l~s~~~~~v~G~~i  212 (223)
T PRK05884        184 ---T-P-PPVAAEIARLALFLTTPAARHITGQTL  212 (223)
T ss_pred             ---C-C-CCCHHHHHHHHHHHcCchhhccCCcEE
Confidence               1 1 126777766      444556677754

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.95  E-value=1.8e-26  Score=196.46  Aligned_cols=226  Identities=19%  Similarity=0.145  Sum_probs=177.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE---EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY---QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~---~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++.+|+++ ||||+      +|||..+++.   +++.|+.++   .|+.++.++..+++...  +.++.++++|++++++
T Consensus         2 ~~~~~~il-I~Gas------g~iG~~la~~---l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   69 (247)
T PRK05565          2 KLMGKVAI-VTGAS------GGIGRAIAEL---LAKEGAKVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEED   69 (247)
T ss_pred             CCCCCEEE-EeCCC------cHHHHHHHHH---HHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            57788988 99999      9999999554   556666654   47777777777777653  4578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.+.++++|+||||||...  +..+.+.++++..+++|+.+++.+++.++|.+.+++.  +++|++||..+..
T Consensus        70 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~v~~sS~~~~~  147 (247)
T PRK05565         70 VENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKS--GVIVNISSIWGLI  147 (247)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEECCHhhcc
Confidence            99999999998899999999999863  3456688899999999999999999999999987766  8999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       ....|+.+|.++..++++++.++...||++++++||+++ ++.+..... ....+...
T Consensus       148 ~~------------~-------~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~-~~~~~~~~  207 (247)
T PRK05565        148 GA------------S-------CEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEE-DKEGLAEE  207 (247)
T ss_pred             CC------------C-------CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChH-HHHHHHhc
Confidence            54            2       566899999999999999999998889999999999999 776654321 00011111


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .  ..+...++++.+.      .......+|+++
T Consensus       208 ~--~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~  239 (247)
T PRK05565        208 I--PLGRLGKPEEIAKVVLFLASDDASYITGQII  239 (247)
T ss_pred             C--CCCCCCCHHHHHHHHHHHcCCccCCccCcEE
Confidence            1  1122457788875      444556778766

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.95  E-value=1.7e-26  Score=197.72  Aligned_cols=188  Identities=24%  Similarity=0.279  Sum_probs=157.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE---EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY---QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~---~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      +++++++++ ||||+      +|||.++++   .++++|..|+   .|+.++.++..+++...  +.++.++++|++|.+
T Consensus         2 ~~~~~~~il-ItGas------g~iG~~la~---~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~   69 (254)
T PRK12746          2 KNLDGKVAL-VTGAS------RGIGRAIAM---RLANDGALVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSID   69 (254)
T ss_pred             CCCCCCEEE-EeCCC------chHHHHHHH---HHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHH
Confidence            457789998 99999      999999944   5566777664   37777777777776543  457889999999999


Q ss_pred             HHHHHHHHHHHhC------CCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy4251          98 SVKKFAEEYQKKF------RSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV  169 (292)
Q Consensus        98 ~v~~~~~~~~~~~------~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v  169 (292)
                      ++.++++++.+++      +++|++|||||...  ...+.+.+.++..+++|+.+++++++.+++.+.+.    +++|++
T Consensus        70 ~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~v~~  145 (254)
T PRK12746         70 GVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAE----GRVINI  145 (254)
T ss_pred             HHHHHHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC----CEEEEE
Confidence            9999999998876      47999999999863  34566788899999999999999999999998643    799999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      ||..+..+.            +       +...|+.+|++++.+++++++++.+.|+++++++||++. ++.+..
T Consensus       146 sS~~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~  201 (254)
T PRK12746        146 SSAEVRLGF------------T-------GSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKL  201 (254)
T ss_pred             CCHHhcCCC------------C-------CCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhh
Confidence            998776543            2       567899999999999999999998889999999999999 876543

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.95  E-value=1.3e-26  Score=198.10  Aligned_cols=213  Identities=15%  Similarity=0.110  Sum_probs=166.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++|++++ |||++      +|||..+++   .+.+.|..|+  .|+.+++++..+++...  +.++.++++|+++.+++
T Consensus         2 ~~~~~~~l-ItG~~------g~iG~~~a~---~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~   69 (253)
T PRK08217          2 DLKDKVIV-ITGGA------QGLGRAMAE---YLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDV   69 (253)
T ss_pred             CCCCCEEE-EECCC------chHHHHHHH---HHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHH
Confidence            36789999 99999      999999944   4556676655  48888888888887655  56889999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCC--C---------CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEE
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGL--G---------FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVV  167 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~--~---------~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV  167 (292)
                      +++++.+.+.++++|++|||||....  .         .+.+.+.++.++++|+.+++.+++.++|.|.+. ..  ++||
T Consensus        70 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~--~~iv  147 (253)
T PRK08217         70 EATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSK--GVII  147 (253)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC--eEEE
Confidence            99999999888899999999997532  1         345678899999999999999999999999765 34  7899


Q ss_pred             EEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc
Q psy4251         168 VVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF  246 (292)
Q Consensus       168 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~  246 (292)
                      ++||.+. .+.            +       +...|+++|++++.+++++++++.+.||++++++||.+. ++.+.....
T Consensus       148 ~~ss~~~-~~~------------~-------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~~~  207 (253)
T PRK08217        148 NISSIAR-AGN------------M-------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMKPE  207 (253)
T ss_pred             EEccccc-cCC------------C-------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCHH
Confidence            9988643 332            2       567899999999999999999998889999999999999 877553221


Q ss_pred             CCccchhhhhhccccccCCHHHhhc
Q psy4251         247 GTPVRTFSWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~a~  271 (292)
                       ....+....  ..+...++++.+.
T Consensus       208 -~~~~~~~~~--~~~~~~~~~~~a~  229 (253)
T PRK08217        208 -ALERLEKMI--PVGRLGEPEEIAH  229 (253)
T ss_pred             -HHHHHHhcC--CcCCCcCHHHHHH
Confidence             011111111  1223467888887

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.95  E-value=2.1e-26  Score=196.63  Aligned_cols=178  Identities=15%  Similarity=0.207  Sum_probs=150.8

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      +|||.++   +..+.+.|+.|+  .|+.+++++..+++     +.++.++++|+++.+++.++++
T Consensus         2 ~vl-ItGas------g~iG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~   66 (248)
T PRK10538          2 IVL-VTGAT------AGFGECI---TRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLA   66 (248)
T ss_pred             EEE-EECCC------chHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHH
Confidence            466 99999      9999999   555666777765  48877766655543     3468899999999999999999


Q ss_pred             HHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      ++.+.++++|++|||||...   +..+.+.++++.++++|+.+++.+++.++|.+.+++.  ++||++||..+..+.   
T Consensus        67 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~isS~~~~~~~---  141 (248)
T PRK10538         67 SLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNH--GHIINIGSTAGSWPY---  141 (248)
T ss_pred             HHHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEECCcccCCCC---
Confidence            99999999999999999752   4456788899999999999999999999999987766  899999998765443   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                               +       +...|+.+|++++.+++.++.++.+.||++++|+||.+. +..
T Consensus       142 ---------~-------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~  185 (248)
T PRK10538        142 ---------A-------GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEF  185 (248)
T ss_pred             ---------C-------CCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeeccccc
Confidence                     2       567899999999999999999999999999999999997 543

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.95  E-value=1.3e-26  Score=197.24  Aligned_cols=198  Identities=13%  Similarity=0.115  Sum_probs=162.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +.+++++|+.|+  .|+.++.++..+++... ++.++.++++|+++++++++++
T Consensus         2 ~~vl-ItGas------~giG~~~---a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~   70 (243)
T PRK07102          2 KKIL-IIGAT------SDIARAC---ARRYAAAGARLYLAARDVERLERLADDLRAR-GAVAVSTHELDILDTASHAAFL   70 (243)
T ss_pred             cEEE-EEcCC------cHHHHHH---HHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-cCCeEEEEecCCCChHHHHHHH
Confidence            5778 99999      9999999   555667787765  48888888877777654 2568999999999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++.+   ++|++|||||...  +..+.+.+++++.+++|+.+++.+++++.|.|.+++.  ++||++||..+..+.   
T Consensus        71 ~~~~~---~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~~~---  142 (243)
T PRK07102         71 DSLPA---LPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGS--GTIVGISSVAGDRGR---  142 (243)
T ss_pred             HHHhh---cCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC--CEEEEEecccccCCC---
Confidence            98865   4799999999763  3445677888899999999999999999999988777  999999998766543   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVR  260 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~  260 (292)
                               +       ....|+.+|+++.+++++++.++.+.||++++|+||+++ ++.+....             ..
T Consensus       143 ---------~-------~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~~~~-------------~~  193 (243)
T PRK07102        143 ---------A-------SNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAGLKL-------------PG  193 (243)
T ss_pred             ---------C-------CCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhccCC-------------Cc
Confidence                     2       456799999999999999999999999999999999999 87654321             11


Q ss_pred             cccCCHHHhhc
Q psy4251         261 PVTNFQVDLTG  271 (292)
Q Consensus       261 ~~~~~~~~~a~  271 (292)
                      ..+.++++.++
T Consensus       194 ~~~~~~~~~a~  204 (243)
T PRK07102        194 PLTAQPEEVAK  204 (243)
T ss_pred             cccCCHHHHHH
Confidence            23568888887

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.95  E-value=2e-26  Score=199.71  Aligned_cols=188  Identities=17%  Similarity=0.178  Sum_probs=159.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+.++|+++ ||||+      +|||+++   +.+|+.+|+.|+  .|+.+.+++..+++...  +.++.++++|+++.++
T Consensus         6 ~~~~~~~vl-VtGa~------g~iG~~l---a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~   73 (274)
T PRK07775          6 PHPDRRPAL-VAGAS------SGIGAAT---AIELAAAGFPVALGARRVEKCEELVDKIRAD--GGEAVAFPLDVTDPDS   73 (274)
T ss_pred             CCCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            356678888 99999      9999999   555667787765  47777777777776654  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.+.++++|++|||||...  +..+.+.++++..+++|+.+++.++++++|.+.++..  ++||++||..+..
T Consensus        74 ~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~--g~iv~isS~~~~~  151 (274)
T PRK07775         74 VKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRR--GDLIFVGSDVALR  151 (274)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--ceEEEECChHhcC
Confidence            99999999998899999999999863  3455677889999999999999999999999887666  8999999987665


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      +.            +       ....|+.+|++++.+++++++++...||++++++||+++ ++..
T Consensus       152 ~~------------~-------~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~  198 (274)
T PRK07775        152 QR------------P-------HMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGW  198 (274)
T ss_pred             CC------------C-------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccc
Confidence            43            2       456899999999999999999998889999999999998 6543

>PRK12742 oxidoreductase; Provisional

Probab=99.95  E-value=1.5e-26  Score=195.92  Aligned_cols=214  Identities=15%  Similarity=0.130  Sum_probs=159.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +++||+++ ||||+      +|||+++   +..|.++|+.|+.   ++.++.++..+++       .+.++.+|++|.++
T Consensus         3 ~~~~k~vl-ItGas------ggIG~~~---a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~   65 (237)
T PRK12742          3 AFTGKKVL-VLGGS------RGIGAAI---VRRFVTDGANVRFTYAGSKDAAERLAQET-------GATAVQTDSADRDA   65 (237)
T ss_pred             CCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEecCCCHHHHHHHHHHh-------CCeEEecCCCCHHH
Confidence            46789999 99999      9999999   5556677877653   3555555443332       24678899999998


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.+++++    ++++|++|||||...  +..+.+.++|++.+++|+.+++.+++.+++.|++  .  ++||++||..+..
T Consensus        66 ~~~~~~~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~--g~iv~isS~~~~~  137 (237)
T PRK12742         66 VIDVVRK----SGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPE--G--GRIIIIGSVNGDR  137 (237)
T ss_pred             HHHHHHH----hCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhc--C--CeEEEEecccccc
Confidence            8877653    578999999999863  4556788899999999999999999999999864  3  8999999986532


Q ss_pred             -ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         177 -SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       177 -~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                       +.            +       +...|+.+|++++.+++++++++.+.||+||+|+||+++ ++.......   .....
T Consensus       138 ~~~------------~-------~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~---~~~~~  195 (237)
T PRK12742        138 MPV------------A-------GMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPM---KDMMH  195 (237)
T ss_pred             CCC------------C-------CCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccHH---HHHHH
Confidence             21            2       567899999999999999999999999999999999999 876532110   01111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ... ....+.+|++.++      ++.....+|..+
T Consensus       196 ~~~-~~~~~~~p~~~a~~~~~l~s~~~~~~~G~~~  229 (237)
T PRK12742        196 SFM-AIKRHGRPEEVAGMVAWLAGPEASFVTGAMH  229 (237)
T ss_pred             hcC-CCCCCCCHHHHHHHHHHHcCcccCcccCCEE
Confidence            110 1123468888887      444556677654

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.95  E-value=2.9e-26  Score=195.38  Aligned_cols=188  Identities=15%  Similarity=0.132  Sum_probs=158.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE------cCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ------NCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~------r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      ++++++++ ||||+      +|||+++   +..|.++|+.|+.      ++.+..++..+++...  +.++.++++|+++
T Consensus         3 ~~~~~~il-ItGas------g~iG~~l---a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~   70 (249)
T PRK12827          3 SLDSRRVL-ITGGS------GGLGRAI---AVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRD   70 (249)
T ss_pred             CcCCCEEE-EECCC------ChHHHHH---HHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCC
Confidence            46788888 99999      9999999   5556677777654      3456666666666554  4578999999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHH-HHHHhcCCCCcEEEEEcCc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLE-NALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll-~~l~~~~~~~~~iV~vsS~  172 (292)
                      .+++.++++++.+.++++|+||||||...  +..+.+.++++..+++|+.+++.+++++. +.+++++.  ++||++||.
T Consensus        71 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--~~iv~~sS~  148 (249)
T PRK12827         71 FAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRG--GRIVNIASV  148 (249)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCC--eEEEEECCc
Confidence            99999999999998899999999999864  45667788899999999999999999999 66666666  899999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .+..+.            +       +...|+.+|+++..++++++.++.+.||++++++||++. ++...
T Consensus       149 ~~~~~~------------~-------~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~  200 (249)
T PRK12827        149 AGVRGN------------R-------GQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADN  200 (249)
T ss_pred             hhcCCC------------C-------CCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccc
Confidence            776553            2       567899999999999999999998889999999999999 77654

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.95  E-value=2.3e-26  Score=197.64  Aligned_cols=186  Identities=17%  Similarity=0.233  Sum_probs=157.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE-EE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL-FY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~-v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++++|+++ ||||+      +|||..+   +..+.+.|+. |+  .|+.++.++..+++...  +.++.++++|++++++
T Consensus         3 ~~~~k~vl-ItGa~------g~iG~~l---a~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~   70 (260)
T PRK06198          3 RLDGKVAL-VTGGT------QGLGAAI---ARAFAERGAAGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVED   70 (260)
T ss_pred             CCCCcEEE-EeCCC------chHHHHH---HHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHH
Confidence            46789999 99999      9999999   5555566655 44  48877777777777544  5578889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      +.++++.+.++++++|++|||||...  +..+.+.++++.++++|+.+++.+++.+++.+.++. .  ++||++||..+.
T Consensus        71 ~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~--g~iv~~ss~~~~  148 (260)
T PRK06198         71 CRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAE--GTIVNIGSMSAH  148 (260)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--CEEEEECCcccc
Confidence            99999999999999999999999863  345678889999999999999999999999997653 4  899999998766


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .+.            +       ....|+.+|.+++.++++++.++...||+++.++||++. ++.
T Consensus       149 ~~~------------~-------~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~  195 (260)
T PRK06198        149 GGQ------------P-------FLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGE  195 (260)
T ss_pred             cCC------------C-------CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcch
Confidence            543            2       567899999999999999999999889999999999999 764

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.95  E-value=2.4e-26  Score=195.17  Aligned_cols=185  Identities=16%  Similarity=0.157  Sum_probs=156.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-CHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-CWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |+++ |||++      +|||+.+   +..|++.|+.+++  | +.++.++..+++...  +.++.++++|+++++++.++
T Consensus         1 k~~l-ItG~s------g~iG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~   68 (242)
T TIGR01829         1 RIAL-VTGGM------GGIGTAI---CQRLAKDGYRVAANCGPNEERAEAWLQEQGAL--GFDFRVVEGDVSSFESCKAA   68 (242)
T ss_pred             CEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhh--CCceEEEEecCCCHHHHHHH
Confidence            5677 99999      9999999   5556677877653  5 666666666666543  45789999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++.+.++++|+||||||...  +..+.+.++++.++++|+.+++.+++.++|.+++.+.  ++||++||..+..+.  
T Consensus        69 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~iss~~~~~~~--  144 (242)
T TIGR01829        69 VAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGW--GRIINISSVNGQKGQ--  144 (242)
T ss_pred             HHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEEcchhhcCCC--
Confidence            9999999999999999999863  3456678899999999999999999999999987766  899999998666543  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                                +       +...|+.+|+++..+++.+++++...||+++.++||++. ++.+..
T Consensus       145 ----------~-------~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~  191 (242)
T TIGR01829       145 ----------F-------GQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAM  191 (242)
T ss_pred             ----------C-------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCcccccc
Confidence                      2       567899999999999999999998889999999999999 776543

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.95  E-value=4.8e-27  Score=188.43  Aligned_cols=162  Identities=23%  Similarity=0.277  Sum_probs=139.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC--HHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC--WDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++++++.+.+...+.++.|+  .+..++.++++...  +.++.++++|+++.+++++++
T Consensus         1 k~~l-ItGa~------~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~   71 (167)
T PF00106_consen    1 KTVL-ITGAS------SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALI   71 (167)
T ss_dssp             EEEE-EETTT------SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHH
T ss_pred             CEEE-EECCC------CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc--ccccccccccccccccccccc
Confidence            5788 99999      9999999665444422233444688  78888898999865  589999999999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++.++++++|++|||||...  +..+.+.++|++.+++|+.+++++.++++|    ++.  ++||++||..+..+.   
T Consensus        72 ~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~----~~~--g~iv~~sS~~~~~~~---  142 (167)
T PF00106_consen   72 EEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP----QGG--GKIVNISSIAGVRGS---  142 (167)
T ss_dssp             HHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH----HTT--EEEEEEEEGGGTSSS---
T ss_pred             cccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee----ccc--cceEEecchhhccCC---
Confidence            999999999999999999975  456668899999999999999999999999    234  999999999988776   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHh
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLW  221 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~  221 (292)
                               +       ++..|+++|+++.+|++++++|+
T Consensus       143 ---------~-------~~~~Y~askaal~~~~~~la~e~  166 (167)
T PF00106_consen  143 ---------P-------GMSAYSASKAALRGLTQSLAAEL  166 (167)
T ss_dssp             ---------T-------TBHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------C-------CChhHHHHHHHHHHHHHHHHHhc
Confidence                     3       78899999999999999999986

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.95  E-value=1.6e-26  Score=198.11  Aligned_cols=187  Identities=14%  Similarity=0.118  Sum_probs=161.6

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +++|+++ |||++      +|||+++   +.++.++|+.|+  .|+.++.++..+++...  +.++.++.||+++.+++.
T Consensus         2 ~~~~~vl-ItG~s------g~iG~~l---a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~   69 (258)
T PRK12429          2 LKGKVAL-VTGAA------SGIGLEI---ALALAKEGAKVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAIN   69 (258)
T ss_pred             CCCCEEE-EECCC------chHHHHH---HHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHH
Confidence            5678899 99999      9999999   555566777665  48888888888877654  568999999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.+.++++|+||||||...  +..+.+.++++..+++|+.+++.+++.+++.|.+.+.  ++||++||..+..+.
T Consensus        70 ~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~iss~~~~~~~  147 (258)
T PRK12429         70 AGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG--GRIINMASVHGLVGS  147 (258)
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC--eEEEEEcchhhccCC
Confidence            999999999999999999999763  3455677889999999999999999999999988776  899999998776654


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                  +       +...|+.+|+++..+++.++.++.+.||++++++||++. ++...
T Consensus       148 ------------~-------~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~  193 (258)
T PRK12429        148 ------------A-------GKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRK  193 (258)
T ss_pred             ------------C-------CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhh
Confidence                        2       678899999999999999999998889999999999999 76543

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.95  E-value=1.8e-26  Score=197.70  Aligned_cols=186  Identities=16%  Similarity=0.111  Sum_probs=154.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |+++ ||||+      +|||.++   +..|++.|+.|++  |+ .+..++..++++..  +.++.++++|+++.+++.++
T Consensus         3 k~vl-ItG~s------g~iG~~l---a~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~   70 (256)
T PRK12745          3 PVAL-VTGGR------RGIGLGI---ARALAAAGFDLAINDRPDDEELAATQQELRAL--GVEVIFFPADVADLSAHEAM   70 (256)
T ss_pred             cEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEecCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHH
Confidence            6777 99999      9999999   5556677876654  43 45555666666543  45789999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC-C---CcEEEEEcCccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK-L---FARVVVVSSESH  174 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~-~---~~~iV~vsS~~~  174 (292)
                      ++++.+.++++|++|||||...    ++.+.+.++++..+++|+.+++.+++++++.|.++.. .   .++||++||..+
T Consensus        71 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  150 (256)
T PRK12745         71 LDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNA  150 (256)
T ss_pred             HHHHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhh
Confidence            9999999999999999999853    3455678899999999999999999999999986542 0   267999999887


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      ..+.            +       +...|+.+|++++.++++++.++.+.||++++++||.+. ++...
T Consensus       151 ~~~~------------~-------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~  200 (256)
T PRK12745        151 IMVS------------P-------NRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAP  200 (256)
T ss_pred             ccCC------------C-------CCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccc
Confidence            6654            2       567899999999999999999998889999999999999 77654

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.95  E-value=1.7e-26  Score=197.43  Aligned_cols=180  Identities=16%  Similarity=0.213  Sum_probs=154.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++|+++ |||++      +|||.++   +.++++.|+.|+.  |+.         +...  +.++.++++|+++.++
T Consensus         4 ~~~~~k~vl-ItGas------~~iG~~l---a~~l~~~G~~v~~~~~~~---------~~~~--~~~~~~~~~D~~~~~~   62 (252)
T PRK08220          4 MDFSGKTVW-VTGAA------QGIGYAV---ALAFVEAGAKVIGFDQAF---------LTQE--DYPFATFVLDVSDAAA   62 (252)
T ss_pred             cCCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEecch---------hhhc--CCceEEEEecCCCHHH
Confidence            457899999 99999      9999999   6667778888775  443         1122  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.++++++|++|||||...  +..+.+.++++.++++|+.+++.++++++|.|.++..  ++||++||..+..
T Consensus        63 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g~iv~~ss~~~~~  140 (252)
T PRK08220         63 VAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRS--GAIVTVGSNAAHV  140 (252)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC--CEEEEECCchhcc
Confidence            99999999999999999999999863  4556688899999999999999999999999987766  8999999987665


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       +...|+.+|++++.+++++++++.+.||+|+++.||.+. ++...
T Consensus       141 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~  188 (252)
T PRK08220        141 PR------------I-------GMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRT  188 (252)
T ss_pred             CC------------C-------CCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhh
Confidence            43            2       567899999999999999999999899999999999999 77554

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.95  E-value=2.1e-26  Score=200.08  Aligned_cols=187  Identities=18%  Similarity=0.189  Sum_probs=159.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++|+++ ||||+      +|||.++   +..|.++|+.|+  +|+.+..++..+++.....+.++.++.+|++|.+++.+
T Consensus         2 ~~k~~l-ItGas------g~iG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~   71 (280)
T PRK06914          2 NKKIAI-VTGAS------SGFGLLT---TLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN   71 (280)
T ss_pred             CCCEEE-EECCC------chHHHHH---HHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH
Confidence            467888 99999      9999999   555667787776  48888887777766654334579999999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                       ++++.+.++++|++|||||...  ...+.+.+++++.+++|+.+++.+++.++|.|++.+.  ++||++||..+..+. 
T Consensus        72 -~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~vsS~~~~~~~-  147 (280)
T PRK06914         72 -FQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS--GKIINISSISGRVGF-  147 (280)
T ss_pred             -HHHHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CEEEEECcccccCCC-
Confidence             8999888999999999999864  3455677889999999999999999999999987766  899999998766554 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                 +       +...|+.+|++++.++++++.++.++||++++++||.++ ++.+.
T Consensus       148 -----------~-------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~  193 (280)
T PRK06914        148 -----------P-------GLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEV  193 (280)
T ss_pred             -----------C-------CCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhc
Confidence                       2       567899999999999999999998889999999999999 87653

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.95  E-value=2.5e-26  Score=195.43  Aligned_cols=185  Identities=18%  Similarity=0.162  Sum_probs=152.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH-HHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD-KANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |+++ |||++      +|||.++   +..|.+.|..|+.  |+.+ ..++...++...  +.++.++++|+++.+++.++
T Consensus         3 k~vl-ItG~s------~~iG~~l---a~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~   70 (245)
T PRK12824          3 KIAL-VTGAK------RGIGSAI---ARELLNDGYRVIATYFSGNDCAKDWFEEYGFT--EDQVRLKELDVTDTEECAEA   70 (245)
T ss_pred             CEEE-EeCCC------chHHHHH---HHHHHHcCCEEEEEeCCcHHHHHHHHHHhhcc--CCeEEEEEcCCCCHHHHHHH
Confidence            4677 99999      9999999   5555667777764  5532 233333333222  45789999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++.++++++|++|||||...  +..+.+.++++.++++|+.+++.+++.++|.+.+++.  ++||++||..+..+.  
T Consensus        71 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~iss~~~~~~~--  146 (245)
T PRK12824         71 LAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGY--GRIINISSVNGLKGQ--  146 (245)
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--eEEEEECChhhccCC--
Confidence            9999999999999999999863  3566788999999999999999999999999987766  899999998766543  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                                +       +...|+.+|+++++++++++.++.+.||+++.++||.+. ++.+..
T Consensus       147 ----------~-------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~  193 (245)
T PRK12824        147 ----------F-------GQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQM  193 (245)
T ss_pred             ----------C-------CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhc
Confidence                      2       567899999999999999999998889999999999999 876543

>KOG1014|consensus

Probab=99.95  E-value=1.4e-26  Score=195.25  Aligned_cols=204  Identities=16%  Similarity=0.098  Sum_probs=170.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+--|+.++ |||||      .|||++.   +.+|+.+|..|+  +|+++|++.+.+||.+.++ .++.++.+|.++.+.
T Consensus        45 ~~~~g~WAV-VTGaT------DGIGKay---A~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~  113 (312)
T KOG1014|consen   45 KEKLGSWAV-VTGAT------DGIGKAY---ARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDE  113 (312)
T ss_pred             HHhcCCEEE-EECCC------CcchHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-cEEEEEEEecCCCch
Confidence            333468999 99999      9999999   777888988765  5999999999999999985 899999999999888


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--C--CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--L--GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~--~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +.+-+.+..+. .+|-+||||+|...  |  +.+.+.+.++..+.+|..+...+++..+|.|.+++.  |-||++||.++
T Consensus       114 ~ye~i~~~l~~-~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~--G~IvnigS~ag  190 (312)
T KOG1014|consen  114 VYEKLLEKLAG-LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKK--GIIVNIGSFAG  190 (312)
T ss_pred             hHHHHHHHhcC-CceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCC--ceEEEeccccc
Confidence            55554444443 25888999999975  2  334455578999999999999999999999998777  99999999998


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       ....|++||..+..|+++|++|+..+||.|-++.|++|. .|......        
T Consensus       191 ~~p~------------p-------~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~~~~~--------  243 (312)
T KOG1014|consen  191 LIPT------------P-------LLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAKYRKP--------  243 (312)
T ss_pred             cccC------------h-------hHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccccccCCC--------
Confidence            8876            3       789999999999999999999999999999999999999 77765432        


Q ss_pred             hhhhccccccCCHHHhhc
Q psy4251         254 SWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~  271 (292)
                            +.+..+|+..|.
T Consensus       244 ------sl~~ps~~tfak  255 (312)
T KOG1014|consen  244 ------SLFVPSPETFAK  255 (312)
T ss_pred             ------CCcCcCHHHHHH
Confidence                  224567777766

>KOG1199|consensus

Probab=99.95  E-value=2.3e-28  Score=188.10  Aligned_cols=214  Identities=15%  Similarity=0.075  Sum_probs=173.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC--HHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC--WDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +.+|-+++ |||+.      +|+|+++   +.+|+.+|..++.-+  ..+..+.++++     ++++.|.++|+++++++
T Consensus         6 s~kglval-vtgga------sglg~at---aerlakqgasv~lldlp~skg~~vakel-----g~~~vf~padvtsekdv   70 (260)
T KOG1199|consen    6 STKGLVAL-VTGGA------SGLGKAT---AERLAKQGASVALLDLPQSKGADVAKEL-----GGKVVFTPADVTSEKDV   70 (260)
T ss_pred             hhcCeeEE-eecCc------ccccHHH---HHHHHhcCceEEEEeCCcccchHHHHHh-----CCceEEeccccCcHHHH
Confidence            45677888 99999      9999999   667888888877533  55677777777     78999999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC----CCcEEE
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK----LFARVV  167 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~----~~~~iV  167 (292)
                      +..+...+.+||++|++|||||+..        .....+.+++++++++|++|+|+++++-...|-++.+    +.|.||
T Consensus        71 ~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgvii  150 (260)
T KOG1199|consen   71 RAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVII  150 (260)
T ss_pred             HHHHHHHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEE
Confidence            9999999999999999999999853        2234578899999999999999999999988865432    348999


Q ss_pred             EEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc
Q psy4251         168 VVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF  246 (292)
Q Consensus       168 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~  246 (292)
                      +..|.+++.+..                   +..+|++||.++..|+.-+++++...|||++.+.||..+ ++....+..
T Consensus       151 ntasvaafdgq~-------------------gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpllsslpek  211 (260)
T KOG1199|consen  151 NTASVAAFDGQT-------------------GQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLSSLPEK  211 (260)
T ss_pred             eeceeeeecCcc-------------------chhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhhhhhHH
Confidence            999999887763                   789999999999999999999999999999999999999 888776532


Q ss_pred             CCccchhhhhhccccccCCHHHhhc
Q psy4251         247 GTPVRTFSWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~a~  271 (292)
                        ...|+..+...+.....|.|.+.
T Consensus       212 --v~~fla~~ipfpsrlg~p~eyah  234 (260)
T KOG1199|consen  212 --VKSFLAQLIPFPSRLGHPHEYAH  234 (260)
T ss_pred             --HHHHHHHhCCCchhcCChHHHHH
Confidence              22333333222223456666654

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.95  E-value=1.6e-26  Score=200.30  Aligned_cols=178  Identities=16%  Similarity=0.117  Sum_probs=150.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +..+.+.|+.|+.  |+.++.++.    .+.    .+.++++|+++.+++++++
T Consensus         2 k~vl-ItGas------ggiG~~l---a~~l~~~G~~V~~~~r~~~~~~~~----~~~----~~~~~~~Dl~~~~~~~~~~   63 (274)
T PRK05693          2 PVVL-ITGCS------SGIGRAL---ADAFKAAGYEVWATARKAEDVEAL----AAA----GFTAVQLDVNDGAALARLA   63 (274)
T ss_pred             CEEE-EecCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHH----HHC----CCeEEEeeCCCHHHHHHHH
Confidence            5677 99999      9999999   5556677887764  776655432    222    4678899999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++.+.++++|+||||||...  +..+.+.++++..+++|+.|++.++++++|.+.+. .  ++||++||..+..+.   
T Consensus        64 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~--g~iv~isS~~~~~~~---  137 (274)
T PRK05693         64 EELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRS-R--GLVVNIGSVSGVLVT---  137 (274)
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc-C--CEEEEECCccccCCC---
Confidence            999999999999999999763  45667889999999999999999999999999754 3  899999998776554   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                               +       ....|+++|++++.++++++.++.+.||+|++|+||.|+ ++.++.
T Consensus       138 ---------~-------~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~  184 (274)
T PRK05693        138 ---------P-------FAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFASNA  184 (274)
T ss_pred             ---------C-------CccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccccccc
Confidence                     2       567899999999999999999999899999999999999 877653

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.95  E-value=2.3e-26  Score=221.16  Aligned_cols=187  Identities=16%  Similarity=0.175  Sum_probs=162.3

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ...++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+.+++..+++.+..+..++..+++|++|.+
T Consensus       409 ~~~l~gkvvL-VTGas------ggIG~ai---A~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~  478 (676)
T TIGR02632       409 EKTLARRVAF-VTGGA------GGIGRET---ARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQ  478 (676)
T ss_pred             CcCCCCCEEE-EeCCC------cHHHHHH---HHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHH
Confidence            4668899999 99999      9999999   555667787776  4888888888888776544457888999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~  174 (292)
                      ++.++++++.++++++|+||||||...  +..+.+.++|+..+++|+.+++++++.+++.|+++. .  ++||++||..+
T Consensus       479 ~v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~--g~IV~iSS~~a  556 (676)
T TIGR02632       479 AVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLG--GNIVFIASKNA  556 (676)
T ss_pred             HHHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CEEEEEeChhh
Confidence            999999999999999999999999863  455667889999999999999999999999998764 4  79999999877


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..+.            +       +...|++||++++.++++++.++.+.||+||+|+||.|.
T Consensus       557 ~~~~------------~-------~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~  600 (676)
T TIGR02632       557 VYAG------------K-------NASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVL  600 (676)
T ss_pred             cCCC------------C-------CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCcee
Confidence            6654            2       578999999999999999999999999999999999885

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.95  E-value=1.6e-26  Score=197.47  Aligned_cols=186  Identities=21%  Similarity=0.217  Sum_probs=154.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHH--HHHHHHHHHhhCCC-CceEEEEccCCC-
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDK--ANDAISKILTEKPS-AQCIAMELDLCR-   95 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~--~~~~~~~l~~~~~~-~~~~~~~~Dls~-   95 (292)
                      ++.+|+++ ||||+      +|||+++   +.+|++.|..++  .++.+.  .+...+...  ..+ ..+.+.++|+++ 
T Consensus         2 ~~~~~~il-ITGas------~GiG~ai---a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~   69 (251)
T COG1028           2 DLSGKVAL-VTGAS------SGIGRAI---ARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDD   69 (251)
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCC
Confidence            46788999 99999      9999999   666778887754  344332  333333333  112 368888999998 


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      .++++.+++.+.+.+|++|++|||||+..   +..+.+.++|+..+++|+.+++.+++.+.|.++   .  .+||++||.
T Consensus        70 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~---~--~~Iv~isS~  144 (251)
T COG1028          70 EESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMK---K--QRIVNISSV  144 (251)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhh---h--CeEEEECCc
Confidence            99999999999999999999999999974   567788899999999999999999998888887   2  399999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChh-hhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWA-MTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWW  244 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~  244 (292)
                      .+. ...                   + ...|++||+++.+|+++++.++.+.||++++|+||++. ++.+...
T Consensus       145 ~~~-~~~-------------------~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~~~~~~  198 (251)
T COG1028         145 AGL-GGP-------------------PGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPMTAALE  198 (251)
T ss_pred             hhc-CCC-------------------CCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcchhhhh
Confidence            887 542                   4 48999999999999999999999999999999999999 8887543

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.95  E-value=1.5e-26  Score=195.78  Aligned_cols=218  Identities=15%  Similarity=0.123  Sum_probs=162.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ |||++      +|||+++   +..|++.|+.|+.  |+....         .  ..++.++++|++++   
T Consensus         2 ~l~~k~~l-VtGas------~~iG~~i---a~~l~~~G~~v~~~~r~~~~~---------~--~~~~~~~~~D~~~~---   57 (235)
T PRK06550          2 EFMTKTVL-ITGAA------SGIGLAQ---ARAFLAQGAQVYGVDKQDKPD---------L--SGNFHFLQLDLSDD---   57 (235)
T ss_pred             CCCCCEEE-EcCCC------chHHHHH---HHHHHHCCCEEEEEeCCcccc---------c--CCcEEEEECChHHH---
Confidence            47889999 99999      9999999   5556677877764  443210         1  24688999999987   


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                         ++++.+.++++|++|||||..   .+..+.+.+++++.+++|+.+++.++++++|.+.+++.  ++||++||..+..
T Consensus        58 ---~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~  132 (235)
T PRK06550         58 ---LEPLFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKS--GIIINMCSIASFV  132 (235)
T ss_pred             ---HHHHHHhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEEcChhhcc
Confidence               444555568999999999975   34466788899999999999999999999999987776  8999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|+.+|+++..++++++.++.++||++++|+||+++ ++.......   ......
T Consensus       133 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~---~~~~~~  190 (235)
T PRK06550        133 AG------------G-------GGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEP---GGLADW  190 (235)
T ss_pred             CC------------C-------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCc---hHHHHH
Confidence            54            2       567899999999999999999999899999999999999 876432211   111111


Q ss_pred             hhcccc--ccCCHHHhhc------ccccCCCCCccc-cCCcccc
Q psy4251         256 ISRVRP--VTNFQVDLTG------TAEKVGLSGLPD-SEWMWHY  290 (292)
Q Consensus       256 ~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~~  290 (292)
                      .....+  -+.++++.|.      ++.....+|+.+ .+.-|.+
T Consensus       191 ~~~~~~~~~~~~~~~~a~~~~~l~s~~~~~~~g~~~~~~gg~~~  234 (235)
T PRK06550        191 VARETPIKRWAEPEEVAELTLFLASGKADYMQGTIVPIDGGWTL  234 (235)
T ss_pred             HhccCCcCCCCCHHHHHHHHHHHcChhhccCCCcEEEECCceec
Confidence            111112  2468888887      444556677754 3444443

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.95  E-value=9.6e-26  Score=192.44  Aligned_cols=190  Identities=23%  Similarity=0.261  Sum_probs=161.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++.+|+++ ||||+      ++||.++   +..|.++|+.|+  .|+.++.....+++...  +.++.++.+|++|.++
T Consensus         2 ~~~~~~~il-ItGas------g~iG~~l---~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~   69 (251)
T PRK12826          2 RDLEGRVAL-VTGAA------RGIGRAI---AVRLAADGAEVIVVDICGDDAAATAELVEAA--GGKARARQVDVRDRAA   69 (251)
T ss_pred             CCCCCCEEE-EcCCC------CcHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHH
Confidence            346789998 99999      9999999   555666776665  48888887777777655  4568999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc-
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR-  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~-  175 (292)
                      +.++++++.+.++++|++|||+|...  +..+.+.++++..+++|+.+++.+++.++|.+.+++.  ++||++||..+. 
T Consensus        70 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~ii~~ss~~~~~  147 (251)
T PRK12826         70 LKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG--GRIVLTSSVAGPR  147 (251)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--cEEEEEechHhhc
Confidence            99999999999999999999999864  3446678899999999999999999999999987766  899999998765 


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+.            +       +...|+.+|++++.++++++.++...|++++.++||.+. +..+..
T Consensus       148 ~~~------------~-------~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~  197 (251)
T PRK12826        148 VGY------------P-------GLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNL  197 (251)
T ss_pred             cCC------------C-------CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhc
Confidence            322            2       567899999999999999999998889999999999999 765543

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.95  E-value=8.4e-26  Score=192.41  Aligned_cols=186  Identities=15%  Similarity=0.108  Sum_probs=154.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ++++ ||||+      +|||.++   +..|+++|+.|++   |+.++.++...++...  +.++.++++|++|++++.++
T Consensus         2 ~~~l-ItGa~------g~iG~~l---~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~   69 (247)
T PRK09730          2 AIAL-VTGGS------RGIGRAT---ALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA--GGKAFVLQADISDENQVVAM   69 (247)
T ss_pred             CEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCChHHHHHHHHHHHhC--CCeEEEEEccCCCHHHHHHH
Confidence            4677 99999      9999999   5556677877742   7777777777777654  45788899999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC-CCcEEEEEcCccccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK-LFARVVVVSSESHRYSY  178 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~-~~~~iV~vsS~~~~~~~  178 (292)
                      ++++.++++++|++|||||...   +..+.+.++++..+++|+.+++.+++.+++.+.+... +.++||++||..+..+.
T Consensus        70 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~  149 (247)
T PRK09730         70 FTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA  149 (247)
T ss_pred             HHHHHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC
Confidence            9999999999999999999752   3455677889999999999999999999999876531 11789999998776553


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      .           .       ....|+++|++++.++++++.++.+.||++++++||.+. ++..
T Consensus       150 ~-----------~-------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~  195 (247)
T PRK09730        150 P-----------G-------EYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHA  195 (247)
T ss_pred             C-----------C-------cccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccc
Confidence            1           0       234699999999999999999998889999999999999 7654

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.95  E-value=6.9e-26  Score=196.44  Aligned_cols=181  Identities=16%  Similarity=0.123  Sum_probs=151.8

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+..++..+++     +.++.++++|++|.+++.+++
T Consensus         3 k~vl-VtGas------g~IG~~l---a~~L~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~   67 (276)
T PRK06482          3 KTWF-ITGAS------SGFGRGM---TERLLARGDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVV   67 (276)
T ss_pred             CEEE-EecCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHH
Confidence            6777 99999      9999999   555667777765  47776655544332     247889999999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++.+.++++|+||||||...  +..+.+.+++++.+++|+.+++.++++++|+|+++..  ++||++||..+..+.   
T Consensus        68 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~~~---  142 (276)
T PRK06482         68 DRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGG--GRIVQVSSEGGQIAY---  142 (276)
T ss_pred             HHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CEEEEEcCcccccCC---
Confidence            999988899999999999863  3455677889999999999999999999999987766  899999998765443   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                               +       +...|+.||++++.++++++.++.+.||+++.++||.+. ++...
T Consensus       143 ---------~-------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~  188 (276)
T PRK06482        143 ---------P-------GFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAG  188 (276)
T ss_pred             ---------C-------CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCccc
Confidence                     2       567899999999999999999998889999999999998 66543

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.3e-25  Score=193.19  Aligned_cols=184  Identities=18%  Similarity=0.187  Sum_probs=156.3

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +++++ ||||+      +|||+++++   .+...|+.|+  .|+.++.++..+++...  +.++.++.+|++|.+++.++
T Consensus         1 ~~~vl-VtGas------g~iG~~la~---~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~~~   68 (263)
T PRK06181          1 GKVVI-ITGAS------EGIGRALAV---RLARAGAQLVLAARNETRLASLAQELADH--GGEALVVPTDVSDAEACERL   68 (263)
T ss_pred             CCEEE-EecCC------cHHHHHHHH---HHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHH
Confidence            46777 99999      999999944   4556676665  48888888887777665  45788999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCC-CCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSH-TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~-~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++++.++++++|++|||||...  +..+. +.+++++.+++|+.+++.+++.++|.+.++ .  ++||++||..+..+. 
T Consensus        69 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~--~~iv~~sS~~~~~~~-  144 (263)
T PRK06181         69 IEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKAS-R--GQIVVVSSLAGLTGV-  144 (263)
T ss_pred             HHHHHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-C--CEEEEEecccccCCC-
Confidence            9999999999999999999763  33455 778899999999999999999999998755 3  899999998776554 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                 +       +...|+.+|++++.++++++.++.+.+|+++++.||.+. ++.+.
T Consensus       145 -----------~-------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~  190 (263)
T PRK06181        145 -----------P-------TRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR  190 (263)
T ss_pred             -----------C-------CccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh
Confidence                       2       567899999999999999999999889999999999999 77654

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.94  E-value=3.2e-25  Score=188.66  Aligned_cols=189  Identities=19%  Similarity=0.234  Sum_probs=157.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCH-HHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCW-DKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++++|+++ |||++      +|||.++   +..+.+.|+.|+  .|+. +..+...+++...  +.++.++++|+++.++
T Consensus         2 ~~~~~~vl-ItG~s------g~iG~~l---~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~   69 (248)
T PRK05557          2 SLEGKVAL-VTGAS------RGIGRAI---AERLAAQGANVVINYASSEAGAEALVAEIGAL--GGKALAVQGDVSDAES   69 (248)
T ss_pred             CCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence            46788888 99999      9999999   555556777764  3543 3455666666544  5688999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.+.++++|++|||||...  +..+.+.++++..+++|+.+.+.+++.+++.+.+...  +++|++||..+..
T Consensus        70 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~v~iss~~~~~  147 (248)
T PRK05557         70 VERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRS--GRIINISSVVGLM  147 (248)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--eEEEEEcccccCc
Confidence            99999999998899999999999864  3456678889999999999999999999999987666  8999999987665


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      +.            +       +...|+.+|++++.+++++++++...||++++++||+++ ++.+..
T Consensus       148 ~~------------~-------~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~  196 (248)
T PRK05557        148 GN------------P-------GQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDAL  196 (248)
T ss_pred             CC------------C-------CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccccc
Confidence            54            2       567899999999999999999998889999999999998 776543

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.94  E-value=9.7e-26  Score=191.63  Aligned_cols=191  Identities=16%  Similarity=0.109  Sum_probs=151.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||+      +|||+++   +.+|+.+|+.|+  .|+.+++++..+    .  ..++.+++||+++.+++++++
T Consensus         2 ~~vl-ItGas------~giG~~l---a~~L~~~G~~V~~~~r~~~~~~~~~~----~--~~~~~~~~~D~~~~~~~~~~~   65 (240)
T PRK06101          2 TAVL-ITGAT------SGIGKQL---ALDYAKQGWQVIACGRNQSVLDELHT----Q--SANIFTLAFDVTDHPGTKAAL   65 (240)
T ss_pred             cEEE-EEcCC------cHHHHHH---HHHHHhCCCEEEEEECCHHHHHHHHH----h--cCCCeEEEeeCCCHHHHHHHH
Confidence            5677 99999      9999999   555667777765  488776655433    2  236788999999999999998


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++..   .+|.+|+|||...  ...+.+.+++++++++|+.+++.+++.++|.|.+  .  ++||++||..+..+.   
T Consensus        66 ~~~~~---~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~--~~iv~isS~~~~~~~---  135 (240)
T PRK06101         66 SQLPF---IPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSC--G--HRVVIVGSIASELAL---  135 (240)
T ss_pred             Hhccc---CCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc--C--CeEEEEechhhccCC---
Confidence            88742   4799999999753  2334677889999999999999999999999863  3  789999998776654   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVR  260 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~  260 (292)
                               +       +...|+++|++++.++++++.|+..+||++++++||++. ++......             ..
T Consensus       136 ---------~-------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~~-------------~~  186 (240)
T PRK06101        136 ---------P-------RAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNTF-------------AM  186 (240)
T ss_pred             ---------C-------CCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCCC-------------CC
Confidence                     2       567899999999999999999999999999999999999 87654311             11


Q ss_pred             cccCCHHHhhc
Q psy4251         261 PVTNFQVDLTG  271 (292)
Q Consensus       261 ~~~~~~~~~a~  271 (292)
                      +...++++.++
T Consensus       187 ~~~~~~~~~a~  197 (240)
T PRK06101        187 PMIITVEQASQ  197 (240)
T ss_pred             CcccCHHHHHH
Confidence            22357888877

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.94  E-value=3.4e-25  Score=190.02  Aligned_cols=221  Identities=13%  Similarity=0.083  Sum_probs=168.9

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|+++ ||||+      +|||+++   +..|++.|+.|+  .|+.+++++..+++.    +.++.++++|++|.+++.++
T Consensus         2 ~k~il-ItGat------~~iG~~l---a~~L~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~   67 (257)
T PRK07074          2 KRTAL-VTGAA------GGIGQAL---ARRFLAAGDRVLALDIDAAALAAFADALG----DARFVPVACDLTDAASLAAA   67 (257)
T ss_pred             CCEEE-EECCc------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHH
Confidence            56788 99999      9999999   555556676665  488888777776662    45788999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++.++++++|++|||+|...  +..+.+.++|+..+++|+.+++.+++++++.+.+++.  ++||++||..+....  
T Consensus        68 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~~~~--  143 (257)
T PRK07074         68 LANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSR--GAVVNIGSVNGMAAL--  143 (257)
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--eEEEEEcchhhcCCC--
Confidence            9999999999999999999864  3455677889999999999999999999999987766  899999997554221  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhc-
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISR-  258 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~-  258 (292)
                                        +...|+.+|+++..+++++++++.+.||+|++++||++. ++.......  ...+...... 
T Consensus       144 ------------------~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~~  203 (257)
T PRK07074        144 ------------------GHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAA--NPQVFEELKKW  203 (257)
T ss_pred             ------------------CCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhccccc--ChHHHHHHHhc
Confidence                              456899999999999999999999899999999999999 765432111  1111111100 


Q ss_pred             -cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         259 -VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       259 -~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ...-+..+++.++      .+.....+|+++
T Consensus       204 ~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~  235 (257)
T PRK07074        204 YPLQDFATPDDVANAVLFLASPAARAITGVCL  235 (257)
T ss_pred             CCCCCCCCHHHHHHHHHHHcCchhcCcCCcEE
Confidence             1122467887776      333345567765

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.94  E-value=8.5e-26  Score=191.25  Aligned_cols=207  Identities=15%  Similarity=0.115  Sum_probs=151.1

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||+      +|||+++++.+.+.. .++.++.  |+...  +        ..+.++.+++||+++.++++++.
T Consensus         1 ~~vl-ItGas------~gIG~~ia~~l~~~~-~~~~v~~~~~~~~~--~--------~~~~~~~~~~~Dls~~~~~~~~~   62 (235)
T PRK09009          1 MNIL-IVGGS------GGIGKAMVKQLLERY-PDATVHATYRHHKP--D--------FQHDNVQWHALDVTDEAEIKQLS   62 (235)
T ss_pred             CEEE-EECCC------ChHHHHHHHHHHHhC-CCCEEEEEccCCcc--c--------cccCceEEEEecCCCHHHHHHHH
Confidence            3577 99999      999999966544331 2455553  33211  1        11357889999999999988854


Q ss_pred             HHHHHhCCCccEEEEcccccCC--------CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGL--------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~--------~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                          ++++++|+||||||....        ..+.+.+.++..+++|+.+++.+++.++|.|.++..  ++|+++||..+.
T Consensus        63 ----~~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~--~~i~~iss~~~~  136 (235)
T PRK09009         63 ----EQFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSES--AKFAVISAKVGS  136 (235)
T ss_pred             ----HhcCCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCC--ceEEEEeecccc
Confidence                445789999999998631        234566789999999999999999999999987766  899999986543


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC--CCeEEEEecCCccc-cccccccccCCccch
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK--YKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      ...                ..+.++..|+++|+++..|+++++.|+.+  .+|+|++|+||+++ ++.+..... .    
T Consensus       137 ~~~----------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~~~~-~----  195 (235)
T PRK09009        137 ISD----------------NRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPFQQN-V----  195 (235)
T ss_pred             ccc----------------CCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcchhhc-c----
Confidence            221                11225678999999999999999999976  58999999999999 887643211 0    


Q ss_pred             hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                            ...-..+|++.|.      .......+|.++
T Consensus       196 ------~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~  226 (235)
T PRK09009        196 ------PKGKLFTPEYVAQCLLGIIANATPAQSGSFL  226 (235)
T ss_pred             ------ccCCCCCHHHHHHHHHHHHHcCChhhCCcEE
Confidence                  0111358888887      333345678876

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.94  E-value=3.4e-25  Score=189.29  Aligned_cols=185  Identities=14%  Similarity=0.171  Sum_probs=154.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-CHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-CWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++++++++ ||||+      +|||.++   +.+|+++|+.++.  | +.+...+....+.+.  +.++.++++|++++++
T Consensus         3 ~~~~~~vl-itGas------g~iG~~l---~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   70 (252)
T PRK06077          3 SLKDKVVV-VTGSG------RGIGRAI---AVRLAKEGSLVVVNAKKRAEEMNETLKMVKEN--GGEGIGVLADVSTREG   70 (252)
T ss_pred             CCCCcEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCChHHHHHHHHHHHHc--CCeeEEEEeccCCHHH
Confidence            46788999 99999      9999999   5556677877653  3 445555555556554  4578889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.++++++.+.++++|+||||||...  +..+.+.+.++..+++|+.+++.+++++.|.+++  .  ++||++||..+..
T Consensus        71 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~--~~iv~~sS~~~~~  146 (252)
T PRK06077         71 CETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMRE--G--GAIVNIASVAGIR  146 (252)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhc--C--cEEEEEcchhccC
Confidence            99999999999999999999999853  3455677788999999999999999999999875  3  8999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       +...|+++|++++.+++++++++.+ +|+++.+.||++. ++...
T Consensus       147 ~~------------~-------~~~~Y~~sK~~~~~~~~~l~~~~~~-~i~v~~v~Pg~i~t~~~~~  193 (252)
T PRK06077        147 PA------------Y-------GLSIYGAMKAAVINLTKYLALELAP-KIRVNAIAPGFVKTKLGES  193 (252)
T ss_pred             CC------------C-------CchHHHHHHHHHHHHHHHHHHHHhc-CCEEEEEeeCCccChHHHh
Confidence            43            2       6789999999999999999999987 8999999999999 76544

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.94  E-value=1.6e-25  Score=207.17  Aligned_cols=226  Identities=20%  Similarity=0.154  Sum_probs=168.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ..++|++++ |||++      +|||+++   +..+.+.|+.|++.+.....+..+++.+..   ...++++|+++.++++
T Consensus       206 ~~~~g~~vl-ItGas------ggIG~~l---a~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~---~~~~~~~Dv~~~~~~~  272 (450)
T PRK08261        206 RPLAGKVAL-VTGAA------RGIGAAI---AEVLARDGAHVVCLDVPAAGEALAAVANRV---GGTALALDITAPDAPA  272 (450)
T ss_pred             cCCCCCEEE-EecCC------CHHHHHH---HHHHHHCCCEEEEEeCCccHHHHHHHHHHc---CCeEEEEeCCCHHHHH
Confidence            456789999 99999      9999999   555667788877522111112222222221   2357899999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++.+.++++++|+||||||+..  ...+.+.++|+..+++|+.+++.+++++++.+..+..  ++||++||..+..+.
T Consensus       273 ~~~~~~~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~--g~iv~~SS~~~~~g~  350 (450)
T PRK08261        273 RIAEHLAERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDG--GRIVGVSSISGIAGN  350 (450)
T ss_pred             HHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCC--CEEEEECChhhcCCC
Confidence            999999999999999999999863  3456788999999999999999999999996554455  899999998877654


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhh
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWIS  257 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~  257 (292)
                                  +       +...|+++|+++..|+++++.++..+||++|+|+||+++ ++.+..+..  .......+ 
T Consensus       351 ------------~-------~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~~~~~--~~~~~~~~-  408 (450)
T PRK08261        351 ------------R-------GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAAIPFA--TREAGRRM-  408 (450)
T ss_pred             ------------C-------CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhccchh--HHHHHhhc-
Confidence                        2       677899999999999999999999999999999999999 877654221  00111111 


Q ss_pred             ccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         258 RVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       258 ~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ........|++.++      ++.....+|+.+
T Consensus       409 ~~l~~~~~p~dva~~~~~l~s~~~~~itG~~i  440 (450)
T PRK08261        409 NSLQQGGLPVDVAETIAWLASPASGGVTGNVV  440 (450)
T ss_pred             CCcCCCCCHHHHHHHHHHHhChhhcCCCCCEE
Confidence            01112356777776      445556677654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.94  E-value=7.3e-25  Score=187.50  Aligned_cols=184  Identities=15%  Similarity=0.100  Sum_probs=155.4

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|+++ ||||+      ++||+.+   +..|.++|+.|+  .|+.+..++..+++...  +.++.++++|+++.+++.++
T Consensus         1 ~~~vl-ItGa~------g~lG~~l---~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~   68 (255)
T TIGR01963         1 GKTAL-VTGAA------SGIGLAI---ALALAAAGANVVVNDLGEAGAEAAAKVATDA--GGSVIYLVADVTKEDEIADM   68 (255)
T ss_pred             CCEEE-EcCCc------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHH
Confidence            46777 99999      9999999   555667777665  48888777777776544  45789999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++.+.++++|++|||||...  +..+.+.++++.++++|+.+++.+++.+++.+.+...  ++||++||..+..+.  
T Consensus        69 ~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--~~~v~~ss~~~~~~~--  144 (255)
T TIGR01963        69 IAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGW--GRIINIASAHGLVAS--  144 (255)
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--eEEEEEcchhhcCCC--
Confidence            9999998899999999999864  2345577889999999999999999999999987766  899999998665543  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                                +       ....|+.+|++++.++++++.++...+|+++.++||.+. ++.+
T Consensus       145 ----------~-------~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~  189 (255)
T TIGR01963       145 ----------P-------FKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVE  189 (255)
T ss_pred             ----------C-------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHH
Confidence                      2       567899999999999999999998889999999999998 7653

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.94  E-value=7.6e-25  Score=186.15  Aligned_cols=188  Identities=20%  Similarity=0.221  Sum_probs=159.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++.+++++ ||||+      +|||..+   +..+.++|+.|+  .|+.++.+...+++...  +.++.++++|+++++++
T Consensus         2 ~~~~~~il-ItGas------g~iG~~l---~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~   69 (246)
T PRK05653          2 SLQGKTAL-VTGAS------RGIGRAI---ALRLAADGAKVVIYDSNEEAAEALAAELRAA--GGEARVLVFDVSDEAAV   69 (246)
T ss_pred             CCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCChhHHHHHHHHHHhc--CCceEEEEccCCCHHHH
Confidence            45678888 99999      9999999   555556676665  48888887777777654  56899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++++...++++|++||+||...  +..+.+.++++..+++|+.+.+.+++++.|++.+...  ++||++||..+..+
T Consensus        70 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~--~~ii~~ss~~~~~~  147 (246)
T PRK05653         70 RALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARY--GRIVNISSVSGVTG  147 (246)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEECcHHhccC
Confidence            9999999888899999999999863  3456678889999999999999999999999987766  89999999866544


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .            .       +...|+.+|.+++.+++++++++.+.|+++++++||.+. ++...
T Consensus       148 ~------------~-------~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~  194 (246)
T PRK05653        148 N------------P-------GQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG  194 (246)
T ss_pred             C------------C-------CCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh
Confidence            3            2       567899999999999999999998889999999999998 76643

>KOG1210|consensus

Probab=99.94  E-value=5.4e-25  Score=185.38  Aligned_cols=214  Identities=17%  Similarity=0.066  Sum_probs=173.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      ++++ |||++      +|||+++|+.+..- ++...++.|+.++++++..++.-...-..+.+..+|++|.+++..++++
T Consensus        34 ~hi~-itggS------~glgl~la~e~~~~-ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~  105 (331)
T KOG1210|consen   34 RHIL-ITGGS------SGLGLALALECKRE-GADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEE  105 (331)
T ss_pred             ceEE-EecCc------chhhHHHHHHHHHc-cCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhh
Confidence            6777 99999      99999996664432 3345556799999999999886554334577999999999999999999


Q ss_pred             HHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccccCCCC
Q psy4251         106 YQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++...+++|.+|+|||..-  -+.+.+.+.++..+++|++++++++++.++.|++.. .  |+|+.+||.++..+-    
T Consensus       106 l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~--g~I~~vsS~~a~~~i----  179 (331)
T KOG1210|consen  106 LRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHL--GRIILVSSQLAMLGI----  179 (331)
T ss_pred             hhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccC--cEEEEehhhhhhcCc----
Confidence            9999999999999999873  467889999999999999999999999999998765 4  799999999988876    


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhcccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVRP  261 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~~  261 (292)
                              .       +..+|..+|+|+.+++.++++|+.+.||+|....|+.+. +.+..-...   +.....+++...
T Consensus       180 --------~-------GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~t---kP~~t~ii~g~s  241 (331)
T KOG1210|consen  180 --------Y-------GYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKT---KPEETKIIEGGS  241 (331)
T ss_pred             --------c-------cccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcccccccc---CchheeeecCCC
Confidence                    3       889999999999999999999999999999999999999 655443221   111222222222


Q ss_pred             ccCCHHHhhc
Q psy4251         262 VTNFQVDLTG  271 (292)
Q Consensus       262 ~~~~~~~~a~  271 (292)
                      -..++||.|.
T Consensus       242 s~~~~e~~a~  251 (331)
T KOG1210|consen  242 SVIKCEEMAK  251 (331)
T ss_pred             CCcCHHHHHH
Confidence            3467777765

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.9e-25  Score=184.47  Aligned_cols=156  Identities=12%  Similarity=0.035  Sum_probs=129.6

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      +|||+++++.   |.++ ..|+.  |+.+                   .++||+++.++++++++
T Consensus         2 ~vl-ItGas------~giG~~la~~---l~~~-~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~   51 (199)
T PRK07578          2 KIL-VIGAS------GTIGRAVVAE---LSKR-HEVITAGRSSG-------------------DVQVDITDPASIRALFE   51 (199)
T ss_pred             eEE-EEcCC------cHHHHHHHHH---HHhc-CcEEEEecCCC-------------------ceEecCCChHHHHHHHH
Confidence            566 99999      9999999655   4444 45543  4421                   46899999999999877


Q ss_pred             HHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      +    .+++|+||||||...  +..+.+.++|++++++|+.+++.+++.++|+|.+  .  ++|+++||..+..+.    
T Consensus        52 ~----~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~--g~iv~iss~~~~~~~----  119 (199)
T PRK07578         52 K----VGKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLND--G--GSFTLTSGILSDEPI----  119 (199)
T ss_pred             h----cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C--CeEEEEcccccCCCC----
Confidence            5    378999999999753  3456788899999999999999999999999974  3  899999998776543    


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                              +       +...|+++|+++.+|+++++.|+ ++||+||+|+||+++ ++.
T Consensus       120 --------~-------~~~~Y~~sK~a~~~~~~~la~e~-~~gi~v~~i~Pg~v~t~~~  162 (199)
T PRK07578        120 --------P-------GGASAATVNGALEGFVKAAALEL-PRGIRINVVSPTVLTESLE  162 (199)
T ss_pred             --------C-------CchHHHHHHHHHHHHHHHHHHHc-cCCeEEEEEcCCcccCchh
Confidence                    2       67789999999999999999999 789999999999999 764

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.94  E-value=1.3e-24  Score=184.16  Aligned_cols=185  Identities=18%  Similarity=0.177  Sum_probs=155.9

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +.+++++ ||||+      ++||.++++.   |+..|+.|+  +|+.+++++..+++.+.   .++.++++|+++.+++.
T Consensus         4 ~~~~~il-ItGat------g~iG~~la~~---l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~   70 (237)
T PRK07326          4 LKGKVAL-ITGGS------KGIGFAIAEA---LLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQ   70 (237)
T ss_pred             CCCCEEE-EECCC------CcHHHHHHHH---HHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHH
Confidence            4578899 99999      9999999554   556676665  58888888887777543   47889999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.+.++++|++|||+|...  +..+.+.++++.++++|+.+++.+++++++.+. ...  ++||++||..+..+.
T Consensus        71 ~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~--~~iv~~ss~~~~~~~  147 (237)
T PRK07326         71 RAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALK-RGG--GYIINISSLAGTNFF  147 (237)
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHH-HCC--eEEEEECChhhccCC
Confidence            999999999999999999999763  345678888999999999999999999999984 344  899999998665433


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                  .       +...|+.+|+++..+++.++.++...|+++++|+||.+. ++...
T Consensus       148 ------------~-------~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~  193 (237)
T PRK07326        148 ------------A-------GGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGH  193 (237)
T ss_pred             ------------C-------CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccc
Confidence                        2       466899999999999999999998889999999999998 76544

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.93  E-value=9.5e-25  Score=185.77  Aligned_cols=219  Identities=16%  Similarity=0.147  Sum_probs=162.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++|++++ |||++      +|||..+   +..++..|+.|+  .|+.+++++..++.       ...++.+|+++.++
T Consensus         5 ~~~~~~~~l-ItGa~------g~iG~~~---a~~l~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~   67 (245)
T PRK07060          5 FDFSGKSVL-VTGAS------SGIGRAC---AVALAQRGARVVAAARNAAALDRLAGET-------GCEPLRLDVGDDAA   67 (245)
T ss_pred             cccCCCEEE-EeCCc------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCeEEEecCCCHHH
Confidence            457899999 99999      9999999   555566676665  47776665544322       35578899999998


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      +.++++.    .+++|++|||||...  +..+.+.+++++.+++|+.+++.+++++++.+.+.. .  ++||++||..+.
T Consensus        68 v~~~~~~----~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--~~iv~~sS~~~~  141 (245)
T PRK07060         68 IRAALAA----AGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRG--GSIVNVSSQAAL  141 (245)
T ss_pred             HHHHHHH----hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC--cEEEEEccHHHc
Confidence            8887765    468999999999863  344567788999999999999999999999987543 4  799999998776


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC-ccchh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT-PVRTF  253 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~-~~~~~  253 (292)
                      .+.            +       ....|+.+|++++.++++++.++.+.||++++++||++. ++.+..+.... ...+.
T Consensus       142 ~~~------------~-------~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~  202 (245)
T PRK07060        142 VGL------------P-------DHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPML  202 (245)
T ss_pred             CCC------------C-------CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHH
Confidence            553            2       567899999999999999999998889999999999999 87653222100 00111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ...-..++++.++      .+.....+|+++
T Consensus       203 ~~~--~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~  236 (245)
T PRK07060        203 AAI--PLGRFAEVDDVAAPILFLLSDAASMVSGVSL  236 (245)
T ss_pred             hcC--CCCCCCCHHHHHHHHHHHcCcccCCccCcEE
Confidence            111  1112467888887      334456677765

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.93  E-value=4.8e-25  Score=185.53  Aligned_cols=179  Identities=17%  Similarity=0.142  Sum_probs=142.8

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ |||++      +|||.++   +..|++.|..|++  |+.+..++.    .+.   .++.+..+|++|.+++++++
T Consensus         2 k~vl-ItG~s------g~iG~~l---a~~l~~~G~~V~~~~r~~~~~~~~----~~~---~~~~~~~~D~~d~~~~~~~~   64 (225)
T PRK08177          2 RTAL-IIGAS------RGLGLGL---VDRLLERGWQVTATVRGPQQDTAL----QAL---PGVHIEKLDMNDPASLDQLL   64 (225)
T ss_pred             CEEE-EeCCC------chHHHHH---HHHHHhCCCEEEEEeCCCcchHHH----Hhc---cccceEEcCCCCHHHHHHHH
Confidence            5677 99999      9999999   5556677877764  665554332    221   25677899999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +.+..  +++|+||||||+..    +..+.+.++++..+++|+.+++.+++.++|.+.++ .  ++|+++||..+..+..
T Consensus        65 ~~~~~--~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~--~~iv~~ss~~g~~~~~  139 (225)
T PRK08177         65 QRLQG--QRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPG-Q--GVLAFMSSQLGSVELP  139 (225)
T ss_pred             HHhhc--CCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhc-C--CEEEEEccCccccccC
Confidence            98854  47999999999863    24566788999999999999999999999998754 3  7899999875544321


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                      .......|+++|++++.++++++.++..+||+||+|+||+++ ++...
T Consensus       140 ----------------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~~~~  187 (225)
T PRK08177        140 ----------------DGGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDMGGD  187 (225)
T ss_pred             ----------------CCCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCCCCC
Confidence                            011456799999999999999999999999999999999999 87654

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.93  E-value=2.1e-24  Score=183.63  Aligned_cols=188  Identities=19%  Similarity=0.188  Sum_probs=156.8

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +..|+++ ||||+      ++||.++   +..|.++|+.|+.   ++.+..+...+.+...  +.++.++++|+++++++
T Consensus         4 ~~~~~vl-ItGas------g~iG~~l---~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v   71 (249)
T PRK12825          4 LMGRVAL-VTGAA------RGLGRAI---ALRLARAGADVVVHYRSDEEAAEELVEAVEAL--GRRAQAVQADVTDKAAL   71 (249)
T ss_pred             CCCCEEE-EeCCC------chHHHHH---HHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCcCCHHHH
Confidence            4567888 99999      9999999   5556677877653   3454555555555544  45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++++.+.++++|++||+||...  +..+.+.++++..+++|+.+.+.+++.+.|++.+.+.  +++|++||..+..+
T Consensus        72 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~i~~SS~~~~~~  149 (249)
T PRK12825         72 EAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRG--GRIVNISSVAGLPG  149 (249)
T ss_pred             HHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CEEEEECccccCCC
Confidence            9999999988899999999999763  2345678889999999999999999999999987766  89999999876654


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .            .       +...|+.+|+++..+++.+++++...|++++.++||.+. ++....
T Consensus       150 ~------------~-------~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~  197 (249)
T PRK12825        150 W------------P-------GRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEAT  197 (249)
T ss_pred             C------------C-------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccc
Confidence            3            2       567899999999999999999998889999999999999 776553

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.93  E-value=6.3e-25  Score=185.68  Aligned_cols=173  Identities=13%  Similarity=0.068  Sum_probs=144.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+|+++ ||||+      +|||+.+   +..+++.|+.|+.  |+.+.          ..   ...++++|+++.+++.+
T Consensus         2 ~~k~vl-ItG~s------~~iG~~i---a~~l~~~G~~v~~~~r~~~~----------~~---~~~~~~~D~~~~~~~~~   58 (234)
T PRK07577          2 SSRTVL-VTGAT------KGIGLAL---SLRLANLGHQVIGIARSAID----------DF---PGELFACDLADIEQTAA   58 (234)
T ss_pred             CCCEEE-EECCC------CcHHHHH---HHHHHHCCCEEEEEeCCccc----------cc---CceEEEeeCCCHHHHHH
Confidence            478888 99999      9999999   5556677877764  55432          11   12468999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++.+.+ ++|++|||||...  +..+.+.++++.++++|+.+++.+++.++|.|++++.  ++||++||.... +. 
T Consensus        59 ~~~~~~~~~-~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~-~~-  133 (234)
T PRK07577         59 TLAQINEIH-PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQ--GRIVNICSRAIF-GA-  133 (234)
T ss_pred             HHHHHHHhC-CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEEcccccc-CC-
Confidence            999998876 5899999999864  3455678899999999999999999999999987766  899999998533 22 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                 +       ....|+++|++++.++++++.++.+.||++++|+||++. ++.+.
T Consensus       134 -----------~-------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~  179 (234)
T PRK07577        134 -----------L-------DRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQ  179 (234)
T ss_pred             -----------C-------CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCccccc
Confidence                       2       467899999999999999999999889999999999999 87654

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.93  E-value=9.9e-25  Score=186.45  Aligned_cols=181  Identities=18%  Similarity=0.165  Sum_probs=144.9

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH-HHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW-DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |+++ ||||+      +|||+++   +.+|+++|+.|+.  |+. +.+++    +.+.. +.++.++++|+++.++++++
T Consensus         2 k~vl-ItGas------ggiG~~i---a~~l~~~g~~V~~~~r~~~~~~~~----~~~~~-~~~~~~~~~D~~~~~~~~~~   66 (251)
T PRK06924          2 RYVI-ITGTS------QGLGEAI---ANQLLEKGTHVISISRTENKELTK----LAEQY-NSNLTFHSLDLQDVHELETN   66 (251)
T ss_pred             cEEE-EecCC------chHHHHH---HHHHHhcCCEEEEEeCCchHHHHH----HHhcc-CCceEEEEecCCCHHHHHHH
Confidence            5677 99999      9999999   6667677877664  654 33332    22222 45788999999999999999


Q ss_pred             HHHHHHhCCC--c--cEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCccc
Q psy4251         103 AEEYQKKFRS--L--NILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESH  174 (292)
Q Consensus       103 ~~~~~~~~~~--i--d~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~  174 (292)
                      ++++.+.++.  +  +++|+|||...   ++.+.+.++++.++++|+.+++.+++.++|.+.+. ..  ++||++||..+
T Consensus        67 ~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~  144 (251)
T PRK06924         67 FNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVD--KRVINISSGAA  144 (251)
T ss_pred             HHHHHHhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCC--ceEEEecchhh
Confidence            9999876653  2  28999999853   45677889999999999999999999999999764 34  79999999866


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-ccccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      ..+.            +       +...|+.+|++++.+++.++.++.  +.||+|++|+||+++ ++...
T Consensus       145 ~~~~------------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~  196 (251)
T PRK06924        145 KNPY------------F-------GWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQ  196 (251)
T ss_pred             cCCC------------C-------CcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHH
Confidence            5443            2       678999999999999999999975  458999999999999 87654

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.93  E-value=2.1e-24  Score=182.75  Aligned_cols=185  Identities=17%  Similarity=0.152  Sum_probs=156.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      ++||..+   +..++++|+.|+  .|+.++..+..+++...    .+.++.+|++|.+++
T Consensus         4 ~~~~k~vl-ItGat------g~iG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~   69 (239)
T PRK12828          4 SLQGKVVA-ITGGF------GGLGRAT---AAWLAARGARVALIGRGAAPLSQTLPGVPAD----ALRIGGIDLVDPQAA   69 (239)
T ss_pred             CCCCCEEE-EECCC------CcHhHHH---HHHHHHCCCeEEEEeCChHhHHHHHHHHhhc----CceEEEeecCCHHHH
Confidence            46789998 99999      9999999   455556676665  48877777766666533    466788999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++++.+.++++|+|||++|...  +..+.+.+++++.+++|+.+++.++++++|.+.+++.  ++||++||..+..+
T Consensus        70 ~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~~~  147 (239)
T PRK12828         70 RRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGG--GRIVNIGAGAALKA  147 (239)
T ss_pred             HHHHHHHHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCC--CEEEEECchHhccC
Confidence            9999999999999999999999763  3345678889999999999999999999999987766  89999999876654


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      .            +       +...|+.+|.++..+++.++.++...||+++.+.||.+. ++..
T Consensus       148 ~------------~-------~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~  193 (239)
T PRK12828        148 G------------P-------GMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNR  193 (239)
T ss_pred             C------------C-------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchh
Confidence            3            2       567899999999999999999998889999999999999 7543

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.93  E-value=1.1e-24  Score=186.66  Aligned_cols=179  Identities=15%  Similarity=0.113  Sum_probs=148.9

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|+++ ||||+      +|||+++   +..|...|+.|++  |+.+..++..+.....  +.++.++++|++|.+++.++
T Consensus         2 ~~~vl-VtGas------g~iG~~i---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~   69 (257)
T PRK09291          2 SKTIL-ITGAG------SGFGREV---ALRLARKGHNVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQA   69 (257)
T ss_pred             CCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHH
Confidence            56788 99999      9999999   5556677877764  7877777766665544  44688999999999988776


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++      .++|+||||||...  +..+.+.++++..+++|+.+++.+++.+++.+.++..  ++||++||..+..+.  
T Consensus        70 ~~------~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~SS~~~~~~~--  139 (257)
T PRK09291         70 AE------WDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK--GKVVFTSSMAGLITG--  139 (257)
T ss_pred             hc------CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--ceEEEEcChhhccCC--
Confidence            43      37999999999863  4566788899999999999999999999999987776  899999998766543  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                +       +...|+++|++++.++++++.++.+.||++++|+||++. ++.+.
T Consensus       140 ----------~-------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~  185 (257)
T PRK09291        140 ----------P-------FTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDT  185 (257)
T ss_pred             ----------C-------CcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhh
Confidence                      2       567899999999999999999998889999999999998 77543

>PRK09135 pteridine reductase; Provisional

Probab=99.93  E-value=7.6e-24  Score=180.48  Aligned_cols=185  Identities=16%  Similarity=0.115  Sum_probs=150.1

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .++++++ ||||+      +|||+.+   +.+|++.|+.|++  |+ .+..++..+++.+.. ...+.++++|+++.+++
T Consensus         4 ~~~~~vl-ItGa~------g~iG~~l---~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~   72 (249)
T PRK09135          4 DSAKVAL-ITGGA------RRIGAAI---ARTLHAAGYRVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDAL   72 (249)
T ss_pred             CCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHH
Confidence            4578888 99999      9999999   5556677877764  53 555666666665442 34688999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++++.+.++++|+||||||...  +..+.+.++++..+++|+.+++.+++++.|.+.++.   +++++++|..+..+
T Consensus        73 ~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~  149 (249)
T PRK09135         73 PELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQR---GAIVNITDIHAERP  149 (249)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCC---eEEEEEeChhhcCC
Confidence            9999999999999999999999753  344556778999999999999999999999987653   78888877544332


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      .                   ++...|+.||++++.+++++++++.+ +++++++.||++. +...
T Consensus       150 ~-------------------~~~~~Y~~sK~~~~~~~~~l~~~~~~-~i~~~~v~pg~~~~~~~~  194 (249)
T PRK09135        150 L-------------------KGYPVYCAAKAALEMLTRSLALELAP-EVRVNAVAPGAILWPEDG  194 (249)
T ss_pred             C-------------------CCchhHHHHHHHHHHHHHHHHHHHCC-CCeEEEEEeccccCcccc
Confidence            2                   26778999999999999999999965 6999999999999 7654

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.93  E-value=3.9e-24  Score=182.49  Aligned_cols=187  Identities=18%  Similarity=0.099  Sum_probs=147.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCH-HHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCW-DKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +++||+++ ||||+      +|||+++   +.+|.+.|+.|+  .|+. +..+.+.+++...  +.++.++++|++++++
T Consensus         3 ~~~~k~vl-ItGas------ggiG~~l---~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~   70 (248)
T PRK07806          3 DLPGKTAL-VTGSS------RGIGADT---AKILAGAGAHVVVNYRQKAPRANKVVAEIEAA--GGRASAVGADLTDEES   70 (248)
T ss_pred             CCCCcEEE-EECCC------CcHHHHH---HHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence            46789999 99999      9999999   555667787765  4654 4566666666554  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.++++++.+.++++|++|||||....    ...+++..+++|+.+++.+++.+.|.|.+  .  ++||++||..+....
T Consensus        71 ~~~~~~~~~~~~~~~d~vi~~ag~~~~----~~~~~~~~~~vn~~~~~~l~~~~~~~~~~--~--~~iv~isS~~~~~~~  142 (248)
T PRK07806         71 VAALMDTAREEFGGLDALVLNASGGME----SGMDEDYAMRLNRDAQRNLARAALPLMPA--G--SRVVFVTSHQAHFIP  142 (248)
T ss_pred             HHHHHHHHHHhCCCCcEEEECCCCCCC----CCCCcceeeEeeeHHHHHHHHHHHhhccC--C--ceEEEEeCchhhcCc
Confidence            999999999988999999999986421    12235678999999999999999998853  3  799999996543211


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .              ....+....|+.||++++.++++++.++...||+|++|.||.+. ++...
T Consensus       143 ~--------------~~~~~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~  193 (248)
T PRK07806        143 T--------------VKTMPEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTAT  193 (248)
T ss_pred             c--------------ccCCccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhh
Confidence            0              01111356899999999999999999999999999999999998 76543

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.93  E-value=6e-24  Score=180.04  Aligned_cols=181  Identities=19%  Similarity=0.261  Sum_probs=151.3

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      ||||++      ++||..++   ..|.++|+.|++  |+ .+..++..+++.+.  +.++.++++|++|.++++++++++
T Consensus         2 lItG~~------g~iG~~la---~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~   70 (239)
T TIGR01830         2 LVTGAS------RGIGRAIA---LKLAKEGAKVIITYRSSEEGAEEVVEELKAY--GVKALGVVCDVSDREDVKAVVEEI   70 (239)
T ss_pred             EEECCC------cHHHHHHH---HHHHHCCCEEEEEeCCchhHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHH
Confidence            499999      99999994   456677777664  54 35555666666544  457899999999999999999999


Q ss_pred             HHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         107 QKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       107 ~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      .+.++++|+||||||...  +..+.+.++++..+++|+.+++.+++.+++.+.+...  +++|++||.++..+.      
T Consensus        71 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~v~~sS~~~~~g~------  142 (239)
T TIGR01830        71 EEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRS--GRIINISSVVGLMGN------  142 (239)
T ss_pred             HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--eEEEEECCccccCCC------
Confidence            999999999999999863  3455677889999999999999999999999876655  899999998776654      


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                            +       +...|+.+|+++..+++.+++++...|++++.++||.+. ++...
T Consensus       143 ------~-------~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~  188 (239)
T TIGR01830       143 ------A-------GQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK  188 (239)
T ss_pred             ------C-------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh
Confidence                  2       567899999999999999999998889999999999998 76543

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK08324 short chain dehydrogenase; Validated

Probab=99.92  E-value=4.6e-24  Score=206.15  Aligned_cols=188  Identities=17%  Similarity=0.167  Sum_probs=160.7

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ...+.||+++ ||||+      +|||+++++   .+.+.|..|+  .|+.++++...+++...   .++.++++|+++.+
T Consensus       417 ~~~l~gk~vL-VTGas------ggIG~~la~---~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~  483 (681)
T PRK08324        417 PKPLAGKVAL-VTGAA------GGIGKATAK---RLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEA  483 (681)
T ss_pred             CcCCCCCEEE-EecCC------CHHHHHHHH---HHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHH
Confidence            4567899999 99999      999999954   4556676665  48888887777776543   47889999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~  174 (292)
                      ++.++++++.+.++++|++|||||...  +..+.+.++|+..+++|+.+++.+++.+.+.+++++ .  ++||++||..+
T Consensus       484 ~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~--g~iV~vsS~~~  561 (681)
T PRK08324        484 AVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLG--GSIVFIASKNA  561 (681)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC--cEEEEECCccc
Confidence            999999999999999999999999863  456678899999999999999999999999998754 4  79999999877


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCcc--c-cccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWK--I-TVSK  241 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v--~-~~~~  241 (292)
                      ..+.            +       +...|+++|++++.++++++.++.+.||++|.|+||.|  . ++..
T Consensus       562 ~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~  612 (681)
T PRK08324        562 VNPG------------P-------NFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWT  612 (681)
T ss_pred             cCCC------------C-------CcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCcccc
Confidence            6554            2       57789999999999999999999999999999999999  6 5543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.92  E-value=1.2e-23  Score=178.27  Aligned_cols=184  Identities=15%  Similarity=0.053  Sum_probs=151.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||..+   +..+.+.|+.|+  .|+.++.++..+++.+.   .++.++++|+++.+++
T Consensus         2 ~~~~~~vl-ItGa~------g~iG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~   68 (238)
T PRK05786          2 RLKGKKVA-IIGVS------EGLGYAV---AYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESA   68 (238)
T ss_pred             CcCCcEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHH
Confidence            46789999 99999      9999999   555667787776  48877777666666542   3688899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      .++++++...++++|.+|+|+|........+.++++..+++|+.+++.+.+.++|.+.+  .  +++|++||..+.....
T Consensus        69 ~~~~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~--~~iv~~ss~~~~~~~~  144 (238)
T PRK05786         69 RNVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKE--G--SSIVLVSSMSGIYKAS  144 (238)
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhc--C--CEEEEEecchhcccCC
Confidence            99999998888999999999987532222234788999999999999999999999864  3  8999999976543211


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                                 +       ....|+.+|+++..++++++.++...||+++.++||++. ++.
T Consensus       145 -----------~-------~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~  188 (238)
T PRK05786        145 -----------P-------DQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFE  188 (238)
T ss_pred             -----------C-------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCC
Confidence                       1       456899999999999999999998889999999999999 764

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.92  E-value=1e-23  Score=181.39  Aligned_cols=188  Identities=19%  Similarity=0.188  Sum_probs=153.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++++++ ||||+      +|||+.+   +..|.++|+.|+  .|+.+..++..+++.    +.++.++.+|++++++
T Consensus         7 ~~~~~~~vl-ItGa~------g~iG~~~---a~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~   72 (264)
T PRK12829          7 KPLDGLRVL-VTGGA------SGIGRAI---AEAFAEAGARVHVCDVSEAALAATAARLP----GAKVTATVADVADPAQ   72 (264)
T ss_pred             hccCCCEEE-EeCCC------CcHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHh----cCceEEEEccCCCHHH
Confidence            346789999 99999      9999999   555667777765  477766666555443    2267889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +.++++++.+.++++|+||||||...   +....+.+++++++++|+.+++.+++.+++.+...+. .++|+++||..+.
T Consensus        73 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~vv~~ss~~~~  151 (264)
T PRK12829         73 VERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGH-GGVIIALSSVAGR  151 (264)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CeEEEEecccccc
Confidence            99999999998899999999999863   2455678899999999999999999999998876431 0568888887655


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .+.            +       ....|+.+|++++.+++.+++++...++++++++||++. ++...
T Consensus       152 ~~~------------~-------~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~  200 (264)
T PRK12829        152 LGY------------P-------GRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRR  200 (264)
T ss_pred             cCC------------C-------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHH
Confidence            443            2       556899999999999999999998889999999999998 66543

>KOG1478|consensus

Probab=99.92  E-value=1.6e-24  Score=176.58  Aligned_cols=198  Identities=19%  Similarity=0.200  Sum_probs=164.5

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEE--EcCHHHHHHHHHHHHhhCC--CCceEEEEccCCChHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFY--QNCWDKANDAISKILTEKP--SAQCIAMELDLCRLKSV   99 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~--~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v   99 (292)
                      |+++ |||++      +|||++++..+++.-...  .+++  +|+.+++++++.+|.+.+|  ..++.++++|++++.|+
T Consensus         4 Kval-ITGan------SglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv   76 (341)
T KOG1478|consen    4 KVAL-ITGAN------SGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSV   76 (341)
T ss_pred             eEEE-EecCC------CcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHH
Confidence            4556 99999      999999966655553332  3333  6999999999999999998  56899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCC-----------------------------CCCCCcchhhhhhhhhhHHHHHHH
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLG-----------------------------FSHTEDGFETTFQVNHLAHFYLTL  150 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~-----------------------------~~~~~~~~~~~~~vN~~~~~~l~~  150 (292)
                      .++..+++++|.++|.+..|||++..+                             ..++.|++...|++|++|+|.+++
T Consensus        77 ~~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~  156 (341)
T KOG1478|consen   77 FRASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIR  156 (341)
T ss_pred             HHHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHh
Confidence            999999999999999999999965211                             135789999999999999999999


Q ss_pred             HHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEE
Q psy4251         151 QLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSS  230 (292)
Q Consensus       151 ~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~  230 (292)
                      .+.|++-.+..  ..+|++||..+....     ++++|+.-     ..+...|..||.+...+.-++-+.+.+.|+.-.+
T Consensus       157 ~l~pll~~~~~--~~lvwtSS~~a~kk~-----lsleD~q~-----~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyv  224 (341)
T KOG1478|consen  157 ELEPLLCHSDN--PQLVWTSSRMARKKN-----LSLEDFQH-----SKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYV  224 (341)
T ss_pred             hhhhHhhcCCC--CeEEEEeeccccccc-----CCHHHHhh-----hcCCCCcchhHHHHHHHHHHHhccccccchhhhc
Confidence            99999987766  799999998877655     34444432     2255679999999999999999999999999999


Q ss_pred             ecCCccc-ccccc
Q psy4251         231 RHCCWKI-TVSKK  242 (292)
Q Consensus       231 v~PG~v~-~~~~~  242 (292)
                      ++||..- ++...
T Consensus       225 v~pg~~tt~~~~~  237 (341)
T KOG1478|consen  225 VQPGIFTTNSFSE  237 (341)
T ss_pred             ccCceeecchhhh
Confidence            9999887 66554

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.92  E-value=3.7e-24  Score=182.25  Aligned_cols=174  Identities=17%  Similarity=0.119  Sum_probs=125.9

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ...++||+++ ||||+      +|||+++   +.+++.+|+.|+.  |+.....+   .. ..  . ...++++|+++.+
T Consensus         9 ~~~l~~k~~l-ITGas------~gIG~al---a~~l~~~G~~Vi~~~r~~~~~~~---~~-~~--~-~~~~~~~D~~~~~   71 (245)
T PRK12367          9 QSTWQGKRIG-ITGAS------GALGKAL---TKAFRAKGAKVIGLTHSKINNSE---SN-DE--S-PNEWIKWECGKEE   71 (245)
T ss_pred             HHhhCCCEEE-EEcCC------cHHHHHH---HHHHHHCCCEEEEEECCchhhhh---hh-cc--C-CCeEEEeeCCCHH
Confidence            3567899999 99999      9999999   6667788888764  55421111   11 11  1 2257899999998


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC--CCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA--KLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~--~~~~~iV~vsS~~~~  175 (292)
                      ++.+       .++++|++|||||+.. ..+.+.+++++.+++|+.+++.+++.++|.|.++.  . .+.+++.+|.++.
T Consensus        72 ~~~~-------~~~~iDilVnnAG~~~-~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~-g~~iiv~ss~a~~  142 (245)
T PRK12367         72 SLDK-------QLASLDVLILNHGINP-GGRQDPENINKALEINALSSWRLLELFEDIALNNNSQI-PKEIWVNTSEAEI  142 (245)
T ss_pred             HHHH-------hcCCCCEEEECCccCC-cCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCC-CeEEEEEeccccc
Confidence            8754       3578999999999753 33457889999999999999999999999997631  2 0344444554433


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHH---HHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLF---GEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~---~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      .+             +       ....|++||+++..+   .++++.++...|++|+.++||.++ ++
T Consensus       143 ~~-------------~-------~~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~  190 (245)
T PRK12367        143 QP-------------A-------LSPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSEL  190 (245)
T ss_pred             CC-------------C-------CCchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCccccc
Confidence            21             1       346799999998544   345555667789999999999998 76

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.92  E-value=3.1e-24  Score=182.61  Aligned_cols=176  Identities=20%  Similarity=0.158  Sum_probs=143.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      +|||+++   +..|++.|+.|+.  |+.++  +.    ... .+.++.++++|+++.++++++++
T Consensus         3 ~vl-ItGas------ggiG~~i---a~~l~~~G~~v~~~~r~~~~--~~----~~~-~~~~~~~~~~D~~~~~~~~~~~~   65 (243)
T PRK07023          3 RAI-VTGHS------RGLGAAL---AEQLLQPGIAVLGVARSRHP--SL----AAA-AGERLAEVELDLSDAAAAAAWLA   65 (243)
T ss_pred             eEE-EecCC------cchHHHH---HHHHHhCCCEEEEEecCcch--hh----hhc-cCCeEEEEEeccCCHHHHHHHHH
Confidence            567 99999      9999999   5556677777653  65432  11    111 14578899999999999999877


Q ss_pred             H-HHHhC---CCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         105 E-YQKKF---RSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       105 ~-~~~~~---~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      + +.+.+   +++|++|||||...   +..+.+.++++..+++|+.+++.+++.+++.+.++..  ++||++||..+..+
T Consensus        66 ~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~isS~~~~~~  143 (243)
T PRK07023         66 GDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAE--RRILHISSGAARNA  143 (243)
T ss_pred             HHHHHHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCC--CEEEEEeChhhcCC
Confidence            6 55444   47999999999863   3456678899999999999999999999999987666  89999999876654


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      .            +       +...|+.+|++++++++.++.+ ...||++++|+||+++ ++..
T Consensus       144 ~------------~-------~~~~Y~~sK~a~~~~~~~~~~~-~~~~i~v~~v~pg~~~t~~~~  188 (243)
T PRK07023        144 Y------------A-------GWSVYCATKAALDHHARAVALD-ANRALRIVSLAPGVVDTGMQA  188 (243)
T ss_pred             C------------C-------CchHHHHHHHHHHHHHHHHHhc-CCCCcEEEEecCCccccHHHH
Confidence            4            2       6788999999999999999999 7779999999999999 7754

>PRK08264 short chain dehydrogenase; Validated

Probab=99.92  E-value=1.4e-23  Score=177.86  Aligned_cols=177  Identities=18%  Similarity=0.201  Sum_probs=146.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++++++++ ||||+      +|||+++|+.   |+++|+ .|+  .|+.+++++       .  +.++.++++|++|.++
T Consensus         3 ~~~~~~vl-ItGgs------g~iG~~la~~---l~~~G~~~V~~~~r~~~~~~~-------~--~~~~~~~~~D~~~~~~   63 (238)
T PRK08264          3 DIKGKVVL-VTGAN------RGIGRAFVEQ---LLARGAAKVYAAARDPESVTD-------L--GPRVVPLQLDVTDPAS   63 (238)
T ss_pred             CCCCCEEE-EECCC------chHHHHHHHH---HHHCCcccEEEEecChhhhhh-------c--CCceEEEEecCCCHHH
Confidence            46788999 99999      9999999555   556665 554  477665443       1  4578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +.++++.    ++++|+|||+||..   .+..+.+.++++.++++|+.+++.+++++.|.+++.+.  ++||++||..+.
T Consensus        64 ~~~~~~~----~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~v~~sS~~~~  137 (238)
T PRK08264         64 VAAAAEA----ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGG--GAIVNVLSVLSW  137 (238)
T ss_pred             HHHHHHh----cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CEEEEEcChhhc
Confidence            9887765    36799999999983   23556788999999999999999999999999987766  899999998776


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .+.            +       +...|+.+|++++.+++.++.++.+.|+++++++||.++ ++...
T Consensus       138 ~~~------------~-------~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~  186 (238)
T PRK08264        138 VNF------------P-------NLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAG  186 (238)
T ss_pred             cCC------------C-------CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccccccc
Confidence            543            2       567899999999999999999998889999999999999 77543

>KOG1204|consensus

Probab=99.91  E-value=9.1e-25  Score=175.73  Aligned_cols=191  Identities=17%  Similarity=0.099  Sum_probs=147.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+++.++++|+||++      +|||...+..+.++ .....+++++...++  .+.+.... +........|++...-..
T Consensus         1 m~~~~r~villTGaS------rgiG~~~v~~i~ae-d~e~~r~g~~r~~a~--~~~L~v~~-gd~~v~~~g~~~e~~~l~   70 (253)
T KOG1204|consen    1 MDLNMRKVILLTGAS------RGIGTGSVATILAE-DDEALRYGVARLLAE--LEGLKVAY-GDDFVHVVGDITEEQLLG   70 (253)
T ss_pred             CCcccceEEEEecCC------CCccHHHHHHHHhc-chHHHHHhhhccccc--ccceEEEe-cCCcceechHHHHHHHHH
Confidence            367788888899999      99998774444433 222222222222211  22222222 244555667888777788


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCC-----CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLG-----FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESH  174 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~-----~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~  174 (292)
                      .+.+..+++.++.|++|||||..++.     ...+.++|.+.+++|+++.+.|.+.++|.+++++ .  +.||+|||.++
T Consensus        71 al~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~--~~vVnvSS~aa  148 (253)
T KOG1204|consen   71 ALREAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVN--GNVVNVSSLAA  148 (253)
T ss_pred             HHHhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCcc--CeEEEecchhh
Confidence            88888989999999999999987532     2557889999999999999999999999999986 5  89999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      ..+.            +       .+.+||.+|+|.++|++.+|.|-+ .+|++.++.||.|+ .|....
T Consensus       149 v~p~------------~-------~wa~yc~~KaAr~m~f~~lA~EEp-~~v~vl~~aPGvvDT~mq~~i  198 (253)
T KOG1204|consen  149 VRPF------------S-------SWAAYCSSKAARNMYFMVLASEEP-FDVRVLNYAPGVVDTQMQVCI  198 (253)
T ss_pred             hccc------------c-------HHHHhhhhHHHHHHHHHHHhhcCc-cceeEEEccCCcccchhHHHH
Confidence            8765            3       899999999999999999999987 78999999999999 887653

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.91  E-value=2.1e-23  Score=175.94  Aligned_cols=170  Identities=11%  Similarity=0.026  Sum_probs=140.5

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  107 (292)
                      |||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++++   +.++.++.+|+++.+++.++++++ 
T Consensus         1 lItGas------~~iG~~~---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~-   67 (230)
T PRK07041          1 LVVGGS------SGIGLAL---ARAFAAEGARVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAEA-   67 (230)
T ss_pred             CeecCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHhc-
Confidence            499999      9999999   555667777765  4888777777766642   457889999999999999988763 


Q ss_pred             HhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCC
Q psy4251         108 KKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS  185 (292)
Q Consensus       108 ~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~  185 (292)
                         +++|+||||||...  +..+.+.+++++++++|+.+++.+++  .+.+.  +.  ++||++||..+..+.       
T Consensus        68 ---~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~--~~--g~iv~~ss~~~~~~~-------  131 (230)
T PRK07041         68 ---GPFDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIA--PG--GSLTFVSGFAAVRPS-------  131 (230)
T ss_pred             ---CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhc--CC--eEEEEECchhhcCCC-------
Confidence               78999999999863  35567888999999999999999999  44443  34  899999999876554       


Q ss_pred             ccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         186 KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       186 ~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                           +       +...|+.+|+++++++++++.++..  |++++++||+++ ++...
T Consensus       132 -----~-------~~~~Y~~sK~a~~~~~~~la~e~~~--irv~~i~pg~~~t~~~~~  175 (230)
T PRK07041        132 -----A-------SGVLQGAINAALEALARGLALELAP--VRVNTVSPGLVDTPLWSK  175 (230)
T ss_pred             -----C-------cchHHHHHHHHHHHHHHHHHHHhhC--ceEEEEeecccccHHHHh
Confidence                 2       6778999999999999999999975  999999999999 87654

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=99.91  E-value=1.1e-22  Score=164.05  Aligned_cols=226  Identities=11%  Similarity=0.042  Sum_probs=177.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-WDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ..|+||+++ |+|-.    +.+.|++.+   +..+.++|+.++... .+++++-.+++.+..  +...+++||+++.+++
T Consensus         2 g~L~GK~~l-I~Gva----n~rSIAwGI---Ak~l~~~GAeL~fTy~~e~l~krv~~la~~~--~s~~v~~cDV~~d~~i   71 (259)
T COG0623           2 GLLEGKRIL-IMGVA----NNRSIAWGI---AKALAEQGAELAFTYQGERLEKRVEELAEEL--GSDLVLPCDVTNDESI   71 (259)
T ss_pred             CccCCceEE-EEEec----ccccHHHHH---HHHHHHcCCEEEEEeccHHHHHHHHHHHhhc--cCCeEEecCCCCHHHH
Confidence            468999999 99975    669999999   666778898887532 236666666666553  2467799999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +++++++.++++++|.|||+-|+..      ...+.+.++|...+++..++...+.+++.|.|..  +  |.||.++-..
T Consensus        72 ~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~--g--gSiltLtYlg  147 (259)
T COG0623          72 DALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNN--G--GSILTLTYLG  147 (259)
T ss_pred             HHHHHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCC--C--CcEEEEEecc
Confidence            9999999999999999999999863      4567889999999999999999999999999985  3  8999988877


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccccccccccccCCccchh
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTF  253 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~  253 (292)
                      +....            |       .++..+.+|++++.-+|.||.++.++|||||.|.-|+++.+.....  +-...++
T Consensus       148 s~r~v------------P-------nYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI--~~f~~~l  206 (259)
T COG0623         148 SERVV------------P-------NYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGI--GDFRKML  206 (259)
T ss_pred             ceeec------------C-------CCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhcc--ccHHHHH
Confidence            65544            2       5668899999999999999999999999999999999993322211  1123444


Q ss_pred             hhhhccccc--cCCHHHhhc------ccccCCCCCc
Q psy4251         254 SWISRVRPV--TNFQVDLTG------TAEKVGLSGL  281 (292)
Q Consensus       254 ~~~~~~~~~--~~~~~~~a~------~~~~~~~~G~  281 (292)
                      .+.....|+  ..++|+...      ++...+.+|+
T Consensus       207 ~~~e~~aPl~r~vt~eeVG~tA~fLlSdLssgiTGe  242 (259)
T COG0623         207 KENEANAPLRRNVTIEEVGNTAAFLLSDLSSGITGE  242 (259)
T ss_pred             HHHHhhCCccCCCCHHHhhhhHHHHhcchhcccccc
Confidence            444333333  456777665      6777788887

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.7e-22  Score=169.67  Aligned_cols=176  Identities=15%  Similarity=0.049  Sum_probs=137.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ |||++      +|||..+   +.+|++.|+.|+  .|+.+..++    +...    .+.++++|+++.+++++++
T Consensus         2 ~~vl-vtG~s------g~iG~~l---a~~L~~~G~~v~~~~r~~~~~~~----~~~~----~~~~~~~D~~~~~~v~~~~   63 (222)
T PRK06953          2 KTVL-IVGAS------RGIGREF---VRQYRADGWRVIATARDAAALAA----LQAL----GAEALALDVADPASVAGLA   63 (222)
T ss_pred             ceEE-EEcCC------CchhHHH---HHHHHhCCCEEEEEECCHHHHHH----HHhc----cceEEEecCCCHHHHHHHH
Confidence            4677 99999      9999999   444556677665  477665543    3222    3457899999999999988


Q ss_pred             HHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++..  .++|++|||+|...    +..+.+.++++..+++|+.+++.++++++|.|.+. .  +++|+++|..+..+..
T Consensus        64 ~~~~~--~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~--g~iv~isS~~~~~~~~  138 (222)
T PRK06953         64 WKLDG--EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAA-G--GVLAVLSSRMGSIGDA  138 (222)
T ss_pred             HHhcC--CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhcc-C--CeEEEEcCcccccccc
Confidence            77642  47999999999863    23455788999999999999999999999998654 4  8999999986654421


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                 +     ......|+.+|.+++.+++.++.++.  ++++|+|+||+++ ++.++
T Consensus       139 -----------~-----~~~~~~Y~~sK~a~~~~~~~~~~~~~--~i~v~~v~Pg~i~t~~~~~  184 (222)
T PRK06953        139 -----------T-----GTTGWLYRASKAALNDALRAASLQAR--HATCIALHPGWVRTDMGGA  184 (222)
T ss_pred             -----------c-----CCCccccHHhHHHHHHHHHHHhhhcc--CcEEEEECCCeeecCCCCC
Confidence                       0     00123699999999999999999875  6999999999999 88665

>PRK08017 oxidoreductase; Provisional

Probab=99.90  E-value=2.2e-22  Score=172.33  Aligned_cols=178  Identities=20%  Similarity=0.104  Sum_probs=146.8

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||.++   +..|.++|+.|+  .|+.++.+..    .+.    .+..+++|+++.+++.+++
T Consensus         3 k~vl-VtGas------g~IG~~l---a~~l~~~g~~v~~~~r~~~~~~~~----~~~----~~~~~~~D~~~~~~~~~~~   64 (256)
T PRK08017          3 KSVL-ITGCS------SGIGLEA---ALELKRRGYRVLAACRKPDDVARM----NSL----GFTGILLDLDDPESVERAA   64 (256)
T ss_pred             CEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHhHHH----HhC----CCeEEEeecCCHHHHHHHH
Confidence            5777 99999      9999999   555556676665  4777665443    221    3678899999999999999


Q ss_pred             HHHHHhC-CCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         104 EEYQKKF-RSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       104 ~~~~~~~-~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +.+.+.. +++|++|||||...  +..+.+.+++++.+++|+.|++.+++.++|.+.+.+.  ++||++||..+..+.  
T Consensus        65 ~~i~~~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--~~iv~~ss~~~~~~~--  140 (256)
T PRK08017         65 DEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGE--GRIVMTSSVMGLIST--  140 (256)
T ss_pred             HHHHHhcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC--CEEEEEcCcccccCC--
Confidence            9887643 68999999999753  4456688889999999999999999999999987766  899999998666543  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                +       ....|+.+|++++.++++++.++...|++++++.||.+. ++.+.
T Consensus       141 ----------~-------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~  186 (256)
T PRK08017        141 ----------P-------GRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDN  186 (256)
T ss_pred             ----------C-------CccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhc
Confidence                      2       567899999999999999999998889999999999998 77654

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.87  E-value=2.1e-21  Score=165.13  Aligned_cols=205  Identities=14%  Similarity=-0.035  Sum_probs=137.1

Q ss_pred             HHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCC
Q psy4251          52 CFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH  129 (292)
Q Consensus        52 ~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~  129 (292)
                      +.+|+++|+.|+.  |+.++.+             ...++++|++|.++++++++++.   +++|+||||||...     
T Consensus         2 a~~l~~~G~~Vv~~~r~~~~~~-------------~~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~-----   60 (241)
T PRK12428          2 ARLLRFLGARVIGVDRREPGMT-------------LDGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPG-----   60 (241)
T ss_pred             hHHHHhCCCEEEEEeCCcchhh-------------hhHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCC-----
Confidence            4556678877764  6654421             12357899999999999998874   68999999999752     


Q ss_pred             CCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC-------CCCccc-cCcCCCCCChhhh
Q psy4251         130 TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD-------TISKSV-LSVENYSDFWAMT  201 (292)
Q Consensus       130 ~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~  201 (292)
                       .++++.++++|+.+++.+++.++|.|.+  .  ++||++||.++........       ..+.++ ..........+..
T Consensus        61 -~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~--g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (241)
T PRK12428         61 -TAPVELVARVNFLGLRHLTEALLPRMAP--G--GAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALAT  135 (241)
T ss_pred             -CCCHHHhhhhchHHHHHHHHHHHHhccC--C--cEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCccc
Confidence             2468999999999999999999999863  3  8999999998764210000       000000 0000001223567


Q ss_pred             HHHHhHHHHHHHHHHHH-hHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhccccccCCHHHhhc------cc
Q psy4251         202 AYNDTKLCNVLFGEKLA-TLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTG------TA  273 (292)
Q Consensus       202 ~Y~~sK~a~~~~~~~la-~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~  273 (292)
                      .|++||+++.+++++++ .++.++||+||+|+||.|. +|.+..... ...............+.+|++.|.      ++
T Consensus       136 ~Y~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~-~~~~~~~~~~~~~~~~~~pe~va~~~~~l~s~  214 (241)
T PRK12428        136 GYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSM-LGQERVDSDAKRMGRPATADEQAAVLVFLCSD  214 (241)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhh-hhhHhhhhcccccCCCCCHHHHHHHHHHHcCh
Confidence            89999999999999999 9999889999999999999 887643210 000111000001112468888887      33


Q ss_pred             ccCCCCCccc
Q psy4251         274 EKVGLSGLPD  283 (292)
Q Consensus       274 ~~~~~~G~~~  283 (292)
                      .....+|+..
T Consensus       215 ~~~~~~G~~i  224 (241)
T PRK12428        215 AARWINGVNL  224 (241)
T ss_pred             hhcCccCcEE
Confidence            4445677743

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.87  E-value=4.8e-21  Score=202.19  Aligned_cols=178  Identities=15%  Similarity=0.060  Sum_probs=144.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEE--EEcCH---------------------------------
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLF--YQNCW---------------------------------   67 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v--~~r~~---------------------------------   67 (292)
                      +|++++ ||||+      +|||+++|+.   |+++ |+.|  ++|+.                                 
T Consensus      1996 ~g~vvL-VTGGa------rGIG~aiA~~---LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~ 2065 (2582)
T TIGR02813      1996 SDDVFL-VTGGA------KGVTFECALE---LAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPT 2065 (2582)
T ss_pred             CCCEEE-EeCCC------CHHHHHHHHH---HHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccc
Confidence            478888 99999      9999999554   5554 3454  45761                                 


Q ss_pred             --------------HHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCC
Q psy4251          68 --------------DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTE  131 (292)
Q Consensus        68 --------------~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~  131 (292)
                                    .+.++..+++.+.  +.++.++.||++|.++++++++++.++ ++||+||||||+..  ...+.+.
T Consensus      2066 P~~i~~~~~~~~~~~ei~~~la~l~~~--G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~~~i~~~t~ 2142 (2582)
T TIGR02813      2066 PKKVDALVRPVLSSLEIAQALAAFKAA--GASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLADKHIQDKTL 2142 (2582)
T ss_pred             cchhhhcccccchhHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCCCCcccCCH
Confidence                          1112223334333  568899999999999999999999887 68999999999863  4567899


Q ss_pred             cchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHH
Q psy4251         132 DGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNV  211 (292)
Q Consensus       132 ~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~  211 (292)
                      ++|++.|++|+.|.+.+++++.+.+.      ++||++||..+..+.            +       +...|+++|.++.
T Consensus      2143 e~f~~v~~~nv~G~~~Ll~al~~~~~------~~IV~~SSvag~~G~------------~-------gqs~YaaAkaaL~ 2197 (2582)
T TIGR02813      2143 EEFNAVYGTKVDGLLSLLAALNAENI------KLLALFSSAAGFYGN------------T-------GQSDYAMSNDILN 2197 (2582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCC------CeEEEEechhhcCCC------------C-------CcHHHHHHHHHHH
Confidence            99999999999999999988876543      789999999988775            3       7789999999999


Q ss_pred             HHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         212 LFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       212 ~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      .+++.++.+++.  ++|++|+||.++ +|..
T Consensus      2198 ~la~~la~~~~~--irV~sI~wG~wdtgm~~ 2226 (2582)
T TIGR02813      2198 KAALQLKALNPS--AKVMSFNWGPWDGGMVN 2226 (2582)
T ss_pred             HHHHHHHHHcCC--cEEEEEECCeecCCccc
Confidence            999999999864  999999999999 8764

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.9e-20  Score=157.35  Aligned_cols=176  Identities=19%  Similarity=0.160  Sum_probs=139.0

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .|+++ ||||+      ++||+.+++.+.+.  ..+.++.|+.++.++..+++      ..+.++++|++|.+++.++++
T Consensus         3 ~~~vl-VtG~~------g~iG~~l~~~l~~~--~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~   67 (227)
T PRK08219          3 RPTAL-ITGAS------RGIGAAIARELAPT--HTLLLGGRPAERLDELAAEL------PGATPFPVDLTDPEAIAAAVE   67 (227)
T ss_pred             CCEEE-EecCC------cHHHHHHHHHHHhh--CCEEEEeCCHHHHHHHHHHh------ccceEEecCCCCHHHHHHHHH
Confidence            46777 99999      99999996665433  23333458776655443322      247789999999999888876


Q ss_pred             HHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++    +++|+|||++|...  +..+.+.+++...+++|+.+.+.+++.+++.+.++.   +++|++||..+..+.    
T Consensus        68 ~~----~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---~~~v~~ss~~~~~~~----  136 (227)
T PRK08219         68 QL----GRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH---GHVVFINSGAGLRAN----  136 (227)
T ss_pred             hc----CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---CeEEEEcchHhcCcC----
Confidence            54    57999999999864  345567788999999999999999999999988764   799999998766543    


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                              +       +...|+.+|.+++.+++.++.++... |+++++.||.+. ++...
T Consensus       137 --------~-------~~~~y~~~K~a~~~~~~~~~~~~~~~-i~~~~i~pg~~~~~~~~~  181 (227)
T PRK08219        137 --------P-------GWGSYAASKFALRALADALREEEPGN-VRVTSVHPGRTDTDMQRG  181 (227)
T ss_pred             --------C-------CCchHHHHHHHHHHHHHHHHHHhcCC-ceEEEEecCCccchHhhh
Confidence                    2       56789999999999999999988765 999999999988 65543

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.84  E-value=7.3e-20  Score=147.28  Aligned_cols=171  Identities=13%  Similarity=0.062  Sum_probs=132.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHH---HHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDA---ISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~---~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++++ ||||+      +|||.++++   ++.+.|. .|+  .|+.+..+..   .+++.+.  +.++.++++|+++.+++
T Consensus         1 ~~~l-i~Ga~------~~iG~~~~~---~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~   68 (180)
T smart00822        1 GTYL-ITGGL------GGLGLELAR---WLAERGARHLVLLSRSGPDAPGAAELLAELEAL--GAEVTVVACDVADRAAL   68 (180)
T ss_pred             CEEE-EEcCC------ChHHHHHHH---HHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhc--CCeEEEEECCCCCHHHH
Confidence            4567 99999      999999954   4555654 333  4654332222   3444433  56888999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .++++++...++++|++|||||...  +..+.+.++++..+++|+.+++.+++.+.+    ...  ++||++||..+..+
T Consensus        69 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~--~~ii~~ss~~~~~~  142 (180)
T smart00822       69 AAALAAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRD----LPL--DFFVLFSSVAGVLG  142 (180)
T ss_pred             HHHHHHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhcc----CCc--ceEEEEccHHHhcC
Confidence            9999999988899999999999763  346678889999999999999999998843    234  89999999877765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .            +       ....|+.+|.++..+++.++.    .|+++..++||++.
T Consensus       143 ~------------~-------~~~~y~~sk~~~~~~~~~~~~----~~~~~~~~~~g~~~  179 (180)
T smart00822      143 N------------P-------GQANYAAANAFLDALAAHRRA----RGLPATSINWGAWA  179 (180)
T ss_pred             C------------C-------CchhhHHHHHHHHHHHHHHHh----cCCceEEEeecccc
Confidence            4            2       567899999999999877654    47889999999864

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.84  E-value=1.7e-19  Score=162.80  Aligned_cols=172  Identities=14%  Similarity=0.055  Sum_probs=125.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..++||+++ ||||+      +|||+++   +.++++.|+.|+.  |+.+++++.   +...  ...+..+.+|++|.++
T Consensus       174 ~sl~gK~VL-ITGAS------gGIG~aL---A~~La~~G~~Vi~l~r~~~~l~~~---~~~~--~~~v~~v~~Dvsd~~~  238 (406)
T PRK07424        174 LSLKGKTVA-VTGAS------GTLGQAL---LKELHQQGAKVVALTSNSDKITLE---INGE--DLPVKTLHWQVGQEAA  238 (406)
T ss_pred             cCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHH---Hhhc--CCCeEEEEeeCCCHHH
Confidence            457899999 99999      9999999   6666778877763  666554332   2222  2356788999999988


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCC--CcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL--FARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~--~~~iV~vsS~~~~~  176 (292)
                      +.+.       ++++|++|||||+.. ..+.+.+++++++++|+.|++.++++++|.|++++..  .+.+|++|+ +. .
T Consensus       239 v~~~-------l~~IDiLInnAGi~~-~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~-~  308 (406)
T PRK07424        239 LAEL-------LEKVDILIINHGINV-HGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AE-V  308 (406)
T ss_pred             HHHH-------hCCCCEEEECCCcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-cc-c
Confidence            7554       357999999999853 2356778899999999999999999999999765420  134555554 22 2


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      ..            +       ....|++||+|+..++. +.++.  .++.|..+.||.++ ++
T Consensus       309 ~~------------~-------~~~~Y~ASKaAl~~l~~-l~~~~--~~~~I~~i~~gp~~t~~  350 (406)
T PRK07424        309 NP------------A-------FSPLYELSKRALGDLVT-LRRLD--APCVVRKLILGPFKSNL  350 (406)
T ss_pred             cC------------C-------CchHHHHHHHHHHHHHH-HHHhC--CCCceEEEEeCCCcCCC
Confidence            21            1       34679999999999974 44443  35777788899888 65

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.79  E-value=4.4e-18  Score=150.91  Aligned_cols=164  Identities=14%  Similarity=0.024  Sum_probs=123.2

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++||+++ ||||+      ++||..+++.   |.+.|  ..|+  .|+..+.....+++    +..++.++++|++|.++
T Consensus         2 ~~~k~vL-VTGat------G~IG~~l~~~---L~~~g~~~~V~~~~r~~~~~~~~~~~~----~~~~~~~v~~Dl~d~~~   67 (324)
T TIGR03589         2 FNNKSIL-ITGGT------GSFGKAFISR---LLENYNPKKIIIYSRDELKQWEMQQKF----PAPCLRFFIGDVRDKER   67 (324)
T ss_pred             cCCCEEE-EeCCC------CHHHHHHHHH---HHHhCCCcEEEEEcCChhHHHHHHHHh----CCCcEEEEEccCCCHHH
Confidence            4688988 99999      9999999554   54543  4444  46655443333222    23478899999999998


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.++++       .+|+|||+||......  ...+.+..+++|+.++.++++++.+.    +.  ++||++||.....  
T Consensus        68 l~~~~~-------~iD~Vih~Ag~~~~~~--~~~~~~~~~~~Nv~g~~~ll~aa~~~----~~--~~iV~~SS~~~~~--  130 (324)
T TIGR03589        68 LTRALR-------GVDYVVHAAALKQVPA--AEYNPFECIRTNINGAQNVIDAAIDN----GV--KRVVALSTDKAAN--  130 (324)
T ss_pred             HHHHHh-------cCCEEEECcccCCCch--hhcCHHHHHHHHHHHHHHHHHHHHHc----CC--CEEEEEeCCCCCC--
Confidence            887654       4899999999753211  12233578999999999999998752    33  7999999964321  


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                                          +...|+.||++.+.++++++.+....|++++++.||.|.
T Consensus       131 --------------------p~~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~  169 (324)
T TIGR03589       131 --------------------PINLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVV  169 (324)
T ss_pred             --------------------CCCHHHHHHHHHHHHHHHHHhhccccCcEEEEEeeccee
Confidence                                345799999999999999988877789999999999998

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.79  E-value=3.9e-18  Score=154.62  Aligned_cols=219  Identities=11%  Similarity=-0.023  Sum_probs=179.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ..++||+++ ||||+      +-||.++++++++.......++.|++.+..+...++++.+|..++.++-+|+.|.+.+.
T Consensus       246 ~~~~gK~vL-VTGag------GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~  318 (588)
T COG1086         246 AMLTGKTVL-VTGGG------GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVE  318 (588)
T ss_pred             hHcCCCEEE-EeCCC------CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHH
Confidence            458999999 99999      99999998888888666677778999999999999999988889999999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++..     ++|+|+|.|+..+-+.  -+....+.+.+|++|+.++++++...-    -  .++|.+|+.-+..    
T Consensus       319 ~~~~~~-----kvd~VfHAAA~KHVPl--~E~nP~Eai~tNV~GT~nv~~aa~~~~----V--~~~V~iSTDKAV~----  381 (588)
T COG1086         319 RAMEGH-----KVDIVFHAAALKHVPL--VEYNPEEAIKTNVLGTENVAEAAIKNG----V--KKFVLISTDKAVN----  381 (588)
T ss_pred             HHHhcC-----CCceEEEhhhhccCcc--hhcCHHHHHHHhhHhHHHHHHHHHHhC----C--CEEEEEecCcccC----
Confidence            987775     6999999999875222  234557899999999999999987543    2  7999999987664    


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-------cccccccccCCccchh
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-------TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-------~~~~~~~~~~~~~~~~  253 (292)
                                        +.+.||+||.+.+.++.+++.+....+.++.+|.=|.|.       ++++++-..+.|....
T Consensus       382 ------------------PtNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGSViPlFk~QI~~GgplTvT  443 (588)
T COG1086         382 ------------------PTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGSVIPLFKKQIAEGGPLTVT  443 (588)
T ss_pred             ------------------CchHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCCCCHHHHHHHHHcCCCcccc
Confidence                              567999999999999999998776557899999999887       4445554556666777


Q ss_pred             hhhhccccccCCHHHhhc---ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG---TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~---~~~~~~~~G~~~  283 (292)
                      .+-  +..++++.+|+++   .....+.+|..|
T Consensus       444 dp~--mtRyfMTI~EAv~LVlqA~a~~~gGeif  474 (588)
T COG1086         444 DPD--MTRFFMTIPEAVQLVLQAGAIAKGGEIF  474 (588)
T ss_pred             CCC--ceeEEEEHHHHHHHHHHHHhhcCCCcEE
Confidence            777  8889999999998   344445666655

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.77  E-value=5.3e-18  Score=137.82  Aligned_cols=171  Identities=16%  Similarity=0.138  Sum_probs=128.4

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC---HHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC---WDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      +++ |||++      +|||..+++++.+.....+.++.|+   ....++..+++++.  +.++.+++||++|++++++++
T Consensus         2 tyl-itGG~------gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~d~~~v~~~~   72 (181)
T PF08659_consen    2 TYL-ITGGL------GGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESA--GARVEYVQCDVTDPEAVAAAL   72 (181)
T ss_dssp             EEE-EETTT------SHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHT--T-EEEEEE--TTSHHHHHHHH
T ss_pred             EEE-EECCc------cHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhC--CCceeeeccCccCHHHHHHHH
Confidence            466 99999      9999999888777765556666777   23455678888876  779999999999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++.+++++||.|||+||...  +..+.+.+.++.+++..+.|..+|.+.+.+    .+.  ..+|.+||.++..+.   
T Consensus        73 ~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~----~~l--~~~i~~SSis~~~G~---  143 (181)
T PF08659_consen   73 AQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALEN----RPL--DFFILFSSISSLLGG---  143 (181)
T ss_dssp             HTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTT----TTT--SEEEEEEEHHHHTT----
T ss_pred             HHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhc----CCC--CeEEEECChhHhccC---
Confidence            999999999999999999873  567789999999999999999999887755    233  799999999998877   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCW  235 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~  235 (292)
                               +       +...|+++...++.|++....    .|..+.+|+-|.
T Consensus       144 ---------~-------gq~~YaaAN~~lda~a~~~~~----~g~~~~sI~wg~  177 (181)
T PF08659_consen  144 ---------P-------GQSAYAAANAFLDALARQRRS----RGLPAVSINWGA  177 (181)
T ss_dssp             ---------T-------TBHHHHHHHHHHHHHHHHHHH----TTSEEEEEEE-E
T ss_pred             ---------c-------chHhHHHHHHHHHHHHHHHHh----CCCCEEEEEccc
Confidence                     3       789999999988888876543    356677777654

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=99.75  E-value=4.6e-17  Score=143.60  Aligned_cols=185  Identities=9%  Similarity=-0.101  Sum_probs=129.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhh--HHHHHHHHhhcCcEEEE--cCHHH------------HHHHHHHHHhhCCCCceE
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKK--DGNLCFDLVQSSKLFYQ--NCWDK------------ANDAISKILTEKPSAQCI   87 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~--~a~~~~~l~~~g~~v~~--r~~~~------------~~~~~~~l~~~~~~~~~~   87 (292)
                      .||+++ |||++      +|||++  +   +..+ +.|+.+++  +..++            .+.+.+.+.+.  +..+.
T Consensus        40 ggK~aL-VTGaS------sGIGlA~~I---A~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~--G~~a~  106 (398)
T PRK13656         40 GPKKVL-VIGAS------SGYGLASRI---AAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAA--GLYAK  106 (398)
T ss_pred             CCCEEE-EECCC------chHhHHHHH---HHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhc--CCceE
Confidence            468888 99999      999999  7   5667 78886443  22211            12233334332  45678


Q ss_pred             EEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCC------------------------------------CCCC
Q psy4251          88 AMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF------------------------------------SHTE  131 (292)
Q Consensus        88 ~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~------------------------------------~~~~  131 (292)
                      .++||+++.++++++++++.+++|+||+||||+|...+..                                    ..+.
T Consensus       107 ~i~~DVss~E~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~  186 (398)
T PRK13656        107 SINGDAFSDEIKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATE  186 (398)
T ss_pred             EEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCH
Confidence            8999999999999999999999999999999999762211                                    0122


Q ss_pred             cchhhhhhhhhhHH---HHH--HHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhh--hHHH
Q psy4251         132 DGFETTFQVNHLAH---FYL--TLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAM--TAYN  204 (292)
Q Consensus       132 ~~~~~~~~vN~~~~---~~l--~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~  204 (292)
                      ++++.|+  +++|.   ..-  .+...+.|.  .+  +++|-.|........+                   .+  ..-+
T Consensus       187 ~ei~~Tv--~vMggedw~~Wi~al~~a~lla--~g--~~~va~TY~G~~~t~p-------------------~Y~~g~mG  241 (398)
T PRK13656        187 EEIADTV--KVMGGEDWELWIDALDEAGVLA--EG--AKTVAYSYIGPELTHP-------------------IYWDGTIG  241 (398)
T ss_pred             HHHHHHH--HhhccchHHHHHHHHHhccccc--CC--cEEEEEecCCcceeec-------------------ccCCchHH
Confidence            2333333  33443   222  334445554  33  8999999876655431                   22  3679


Q ss_pred             HhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc
Q psy4251         205 DTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF  246 (292)
Q Consensus       205 ~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~  246 (292)
                      .+|++++.-++.|+.+|++.||++|++.+|.+. .-....+.+
T Consensus       242 ~AKa~LE~~~r~La~~L~~~giran~i~~g~~~T~Ass~Ip~~  284 (398)
T PRK13656        242 KAKKDLDRTALALNEKLAAKGGDAYVSVLKAVVTQASSAIPVM  284 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhcCCCc
Confidence            999999999999999999999999999999999 555555443

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.75  E-value=4e-17  Score=146.28  Aligned_cols=183  Identities=14%  Similarity=0.050  Sum_probs=130.8

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++||+++ ||||+      ++||.++   +..|.+.|+.|++  |+..........+. .  ..++.++.+|+++.+++.
T Consensus         2 ~~~k~il-ItGat------G~IG~~l---~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~Dl~~~~~~~   68 (349)
T TIGR02622         2 WQGKKVL-VTGHT------GFKGSWL---SLWLLELGAEVYGYSLDPPTSPNLFELLN-L--AKKIEDHFGDIRDAAKLR   68 (349)
T ss_pred             cCCCEEE-EECCC------ChhHHHH---HHHHHHCCCEEEEEeCCCccchhHHHHHh-h--cCCceEEEccCCCHHHHH
Confidence            4678888 99999      9999999   6666677877764  55443333322222 1  236778999999999998


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +++++.     ++|+|||+||...  ...+.++....+++|+.++..+++++...   ...  ++||++||...+.....
T Consensus        69 ~~~~~~-----~~d~vih~A~~~~--~~~~~~~~~~~~~~N~~g~~~ll~a~~~~---~~~--~~iv~~SS~~vyg~~~~  136 (349)
T TIGR02622        69 KAIAEF-----KPEIVFHLAAQPL--VRKSYADPLETFETNVMGTVNLLEAIRAI---GSV--KAVVNVTSDKCYRNDEW  136 (349)
T ss_pred             HHHhhc-----CCCEEEECCcccc--cccchhCHHHHHHHhHHHHHHHHHHHHhc---CCC--CEEEEEechhhhCCCCC
Confidence            888764     5899999999642  23355667889999999999999987431   223  69999999765532110


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC----CCeEEEEecCCccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK----YKIALSSRHCCWKI  237 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~----~gi~v~~v~PG~v~  237 (292)
                      ...+..       .....+...|+.||.+.+.+++.+++++..    .|++++++.||.+-
T Consensus       137 ~~~~~e-------~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vy  190 (349)
T TIGR02622       137 VWGYRE-------TDPLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVI  190 (349)
T ss_pred             CCCCcc-------CCCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCccc
Confidence            000111       111225668999999999999999988744    38999999999988

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.73  E-value=1.7e-16  Score=140.83  Aligned_cols=189  Identities=11%  Similarity=-0.050  Sum_probs=130.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +||+++ ||||+      ++||..+   +.+|.+.|+.|+  .|+.+..++....+.......++.++++|+++.+++.+
T Consensus         4 ~~k~vl-VtG~~------G~IG~~l---~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~   73 (325)
T PLN02989          4 GGKVVC-VTGAS------GYIASWI---VKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFEL   73 (325)
T ss_pred             CCCEEE-EECCc------hHHHHHH---HHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHH
Confidence            478888 99999      9999999   666777888875  36655444332222111112478899999999998887


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC-
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT-  180 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~-  180 (292)
                      +++       .+|+||||||....  ..+.+.+...+++|+.+++++++++.+.+   ..  ++||++||.++..+... 
T Consensus        74 ~~~-------~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~g~~~ll~a~~~~~---~~--~~iv~~SS~~~~~~~~~~  139 (325)
T PLN02989         74 AID-------GCETVFHTASPVAI--TVKTDPQVELINPAVNGTINVLRTCTKVS---SV--KRVILTSSMAAVLAPETK  139 (325)
T ss_pred             HHc-------CCCEEEEeCCCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHcC---Cc--eEEEEecchhheecCCcc
Confidence            764       48999999996532  33455678899999999999999987653   23  79999999876544211 


Q ss_pred             ---CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         181 ---KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       181 ---~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                         ...++.+.+.. ..........|+.||.+.+.+++.++++.   |+.++.+.|+.+- +..
T Consensus       140 ~~~~~~~~E~~~~~-p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilR~~~vyGp~~  199 (325)
T PLN02989        140 LGPNDVVDETFFTN-PSFAEERKQWYVLSKTLAEDAAWRFAKDN---EIDLIVLNPGLVTGPIL  199 (325)
T ss_pred             CCCCCccCcCCCCc-hhHhcccccchHHHHHHHHHHHHHHHHHc---CCeEEEEcCCceeCCCC
Confidence               00011111110 00000013569999999999999887764   6899999999998 543

>PRK06720 hypothetical protein; Provisional

Probab=99.73  E-value=3e-16  Score=125.68  Aligned_cols=141  Identities=13%  Similarity=0.197  Sum_probs=109.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||.++   +..+.+.|..|+  .|+.+.+++..+++...  +.+..++++|+++.++
T Consensus        12 ~~l~gk~~l-VTGa~------~GIG~ai---a~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~   79 (169)
T PRK06720         12 MKLAGKVAI-VTGGG------IGIGRNT---ALLLAKQGAKVIVTDIDQESGQATVEEITNL--GGEALFVSYDMEKQGD   79 (169)
T ss_pred             cccCCCEEE-EecCC------ChHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence            457899999 99999      9999999   555667777775  47777777777777643  4567789999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CC-CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC-----CCcEEEEEc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LG-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK-----LFARVVVVS  170 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~-~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~-----~~~~iV~vs  170 (292)
                      ++++++++.++++++|++|||||+..  +. .+.+.++ ++  .+|+.+.+..++.+.+.+.++..     +.||+..||
T Consensus        80 v~~~v~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (169)
T PRK06720         80 WQRVISITLNAFSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIG  156 (169)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEec
Confidence            99999999999999999999999864  22 2223333 33  77888889999999998876542     248999999


Q ss_pred             Cccccc
Q psy4251         171 SESHRY  176 (292)
Q Consensus       171 S~~~~~  176 (292)
                      +.++.+
T Consensus       157 ~~~~~~  162 (169)
T PRK06720        157 TKGQSF  162 (169)
T ss_pred             cccccc
Confidence            876544

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.72  E-value=2.7e-16  Score=145.68  Aligned_cols=172  Identities=11%  Similarity=0.042  Sum_probs=126.0

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhC-------CCCceEEEEccC
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEK-------PSAQCIAMELDL   93 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~-------~~~~~~~~~~Dl   93 (292)
                      .+||+++ ||||+      +|||+.+   +.+|++.|+.|+  +|+.++++.+.+++.+..       ...++.++++|+
T Consensus        78 ~~gKvVL-VTGAT------GgIG~aL---Ar~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDL  147 (576)
T PLN03209         78 KDEDLAF-VAGAT------GKVGSRT---VRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDL  147 (576)
T ss_pred             CCCCEEE-EECCC------CHHHHHH---HHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecC
Confidence            4678888 99999      9999999   555667787765  599888887776664311       123688999999


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      ++.+++.+.       ++.+|+||||+|....    ...++...+++|+.+..++++++...    +.  +|||++||.+
T Consensus       148 tD~esI~~a-------LggiDiVVn~AG~~~~----~v~d~~~~~~VN~~Gt~nLl~Aa~~a----gV--gRIV~VSSig  210 (576)
T PLN03209        148 EKPDQIGPA-------LGNASVVICCIGASEK----EVFDVTGPYRIDYLATKNLVDAATVA----KV--NHFILVTSLG  210 (576)
T ss_pred             CCHHHHHHH-------hcCCCEEEEccccccc----cccchhhHHHHHHHHHHHHHHHHHHh----CC--CEEEEEccch
Confidence            998887553       4679999999997531    22246788999999999999887643    34  8999999986


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      +.....                   ....|. +|.++..+.+.+..++...||+++.|+||++. ++.+
T Consensus       211 a~~~g~-------------------p~~~~~-sk~~~~~~KraaE~~L~~sGIrvTIVRPG~L~tp~d~  259 (576)
T PLN03209        211 TNKVGF-------------------PAAILN-LFWGVLCWKRKAEEALIASGLPYTIVRPGGMERPTDA  259 (576)
T ss_pred             hcccCc-------------------cccchh-hHHHHHHHHHHHHHHHHHcCCCEEEEECCeecCCccc
Confidence            531110                   111233 66777777777777887789999999999998 6543

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.71  E-value=1.3e-17  Score=142.40  Aligned_cols=211  Identities=13%  Similarity=0.046  Sum_probs=143.2

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceE----EEEccCCChHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCI----AMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~----~~~~Dls~~~~v~~~~~~  105 (292)
                      |||||+      +-||.+++++++++.....+++.+++.++.++..++++..++.++.    .+.+|+.|.+.+..++++
T Consensus         2 LVTGa~------GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~   75 (293)
T PF02719_consen    2 LVTGAG------GSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEE   75 (293)
T ss_dssp             EEETTT------SHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT-
T ss_pred             EEEccc------cHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhh
Confidence            499999      9999999777776655556677899999999999998776554443    457899999998888765


Q ss_pred             HHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCC
Q psy4251         106 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS  185 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~  185 (292)
                      .     ++|+|+|.|+.-+.+.  -++...+.+++|++|+.++++++..+    +.  .++|++|+.-+..         
T Consensus        76 ~-----~pdiVfHaAA~KhVpl--~E~~p~eav~tNv~GT~nv~~aa~~~----~v--~~~v~ISTDKAv~---------  133 (293)
T PF02719_consen   76 Y-----KPDIVFHAAALKHVPL--MEDNPFEAVKTNVLGTQNVAEAAIEH----GV--ERFVFISTDKAVN---------  133 (293)
T ss_dssp             ------T-SEEEE------HHH--HCCCHHHHHHHHCHHHHHHHHHHHHT----T---SEEEEEEECGCSS---------
T ss_pred             c-----CCCEEEEChhcCCCCh--HHhCHHHHHHHHHHHHHHHHHHHHHc----CC--CEEEEccccccCC---------
Confidence            4     6999999999865221  22456788999999999999998754    33  7999999986653         


Q ss_pred             ccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-------cccccccccCCccchhhhhhc
Q psy4251         186 KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-------TVSKKWWRFGTPVRTFSWISR  258 (292)
Q Consensus       186 ~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-------~~~~~~~~~~~~~~~~~~~~~  258 (292)
                                   +.+.||+||...+.++.+.+......+.++.+|.=|.|.       +++.+....+.|.....+-  
T Consensus       134 -------------PtnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSVip~F~~Qi~~g~PlTvT~p~--  198 (293)
T PF02719_consen  134 -------------PTNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSVIPLFKKQIKNGGPLTVTDPD--  198 (293)
T ss_dssp             ---------------SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSCHHHHHHHHHTTSSEEECETT--
T ss_pred             -------------CCcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCcHHHHHHHHHHcCCcceeCCCC--
Confidence                         567999999999999999999886677899999888887       2223333334455555555  


Q ss_pred             cccccCCHHHhhc---ccccCCCCCccc
Q psy4251         259 VRPVTNFQVDLTG---TAEKVGLSGLPD  283 (292)
Q Consensus       259 ~~~~~~~~~~~a~---~~~~~~~~G~~~  283 (292)
                      +..+.++++|+++   .....+.+|..|
T Consensus       199 mtRffmti~EAv~Lvl~a~~~~~~geif  226 (293)
T PF02719_consen  199 MTRFFMTIEEAVQLVLQAAALAKGGEIF  226 (293)
T ss_dssp             -EEEEE-HHHHHHHHHHHHHH--TTEEE
T ss_pred             cEEEEecHHHHHHHHHHHHhhCCCCcEE
Confidence            7778889999988   222333455544

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.69  E-value=8.6e-16  Score=137.17  Aligned_cols=188  Identities=11%  Similarity=-0.047  Sum_probs=126.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHH-HHHHHHHHh-h-CCCCceEEEEccCCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKA-NDAISKILT-E-KPSAQCIAMELDLCR   95 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~-~~~~~~l~~-~-~~~~~~~~~~~Dls~   95 (292)
                      .|++|++++ ||||+      ++||..+   +.+|...|+.|++  |+.+.. ....+.+.+ . ..+.++.++.+|++|
T Consensus         2 ~~~~~~~vl-VTGat------GfiG~~l---~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   71 (340)
T PLN02653          2 GDPPRKVAL-ITGIT------GQDGSYL---TEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSD   71 (340)
T ss_pred             CCCCCCEEE-EECCC------CccHHHH---HHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCC
Confidence            577899988 99999      9999999   6667778887764  443211 111222211 0 113468899999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      .+++.++++.+     .+|+|||+||.....  ...+..+..+++|+.++.++++++.+...+... ..++|++||.+.+
T Consensus        72 ~~~~~~~~~~~-----~~d~Vih~A~~~~~~--~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~-~~~~v~~Ss~~vy  143 (340)
T PLN02653         72 ASSLRRWLDDI-----KPDEVYNLAAQSHVA--VSFEMPDYTADVVATGALRLLEAVRLHGQETGR-QIKYYQAGSSEMY  143 (340)
T ss_pred             HHHHHHHHHHc-----CCCEEEECCcccchh--hhhhChhHHHHHHHHHHHHHHHHHHHhcccccc-ceeEEEeccHHHh
Confidence            99999988775     489999999975422  123345677899999999999999887643210 0278888887544


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC---CCeEEEEecCCc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK---YKIALSSRHCCW  235 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~---~gi~v~~v~PG~  235 (292)
                      .... . .++.       .....+...|+.||.+.+.+++.+++++.-   .++.++...||.
T Consensus       144 g~~~-~-~~~E-------~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~  197 (340)
T PLN02653        144 GSTP-P-PQSE-------TTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRR  197 (340)
T ss_pred             CCCC-C-CCCC-------CCCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCC
Confidence            3221 0 1111       122335678999999999999999888642   234455556653

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.65  E-value=1.1e-14  Score=129.06  Aligned_cols=189  Identities=11%  Similarity=-0.023  Sum_probs=125.4

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ..|++++ ||||+      +.||..+   +.+|.++|+.|+  +|+..+.+...+.........++.++++|+++.+++.
T Consensus         3 ~~~~~vl-VTGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~   72 (322)
T PLN02986          3 GGGKLVC-VTGAS------GYIASWI---VKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFE   72 (322)
T ss_pred             CCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHH
Confidence            4688888 99999      9999999   666777888775  4765544333222211111246889999999998887


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc-ccC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY-SYI  179 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~-~~~  179 (292)
                      ++++       .+|+|||+|+....  . ..+.....+++|+.++.++++++...   ...  .|||++||.++.. +..
T Consensus        73 ~~~~-------~~d~vih~A~~~~~--~-~~~~~~~~~~~nv~gt~~ll~~~~~~---~~v--~rvV~~SS~~~~~~~~~  137 (322)
T PLN02986         73 QAIE-------GCDAVFHTASPVFF--T-VKDPQTELIDPALKGTINVLNTCKET---PSV--KRVILTSSTAAVLFRQP  137 (322)
T ss_pred             HHHh-------CCCEEEEeCCCcCC--C-CCCchhhhhHHHHHHHHHHHHHHHhc---CCc--cEEEEecchhheecCCc
Confidence            7765       38999999997421  1 12334567899999999999886532   123  6999999986542 211


Q ss_pred             C---CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         180 T---KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       180 ~---~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      +   ...++.+.+.. ......+...|+.||.+.+.+++.+.++.   |+.++++.|+.|- +..
T Consensus       138 ~~~~~~~~~E~~~~~-p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~---~~~~~~lrp~~v~Gp~~  198 (322)
T PLN02986        138 PIEANDVVDETFFSD-PSLCRETKNWYPLSKILAENAAWEFAKDN---GIDMVVLNPGFICGPLL  198 (322)
T ss_pred             cCCCCCCcCcccCCC-hHHhhccccchHHHHHHHHHHHHHHHHHh---CCeEEEEcccceeCCCC
Confidence            1   00011111111 00000123579999999999999887764   6999999999999 654

>PLN02214 cinnamoyl-CoA reductase

Probab=99.64  E-value=1.5e-14  Score=129.32  Aligned_cols=182  Identities=14%  Similarity=-0.002  Sum_probs=126.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHH-HHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDA-ISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~-~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++++++ ||||+      +.||..+   +.+|.++|+.|.+  |+.+..... ..++...  ..++.++++|+++.++
T Consensus         7 ~~~~~~vl-VTGat------GfIG~~l---~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~   74 (342)
T PLN02214          7 SPAGKTVC-VTGAG------GYIASWI---VKILLERGYTVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEA   74 (342)
T ss_pred             cCCCCEEE-EECCC------cHHHHHH---HHHHHHCcCEEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHH
Confidence            35688888 99999      9999999   6667788887764  765443221 2223211  2368889999999988


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.++++       .+|+|||+|+..       .++.+..+++|+.++..+++++...    ..  .|||++||..+..+.
T Consensus        75 ~~~~~~-------~~d~Vih~A~~~-------~~~~~~~~~~nv~gt~~ll~aa~~~----~v--~r~V~~SS~~avyg~  134 (342)
T PLN02214         75 LKAAID-------GCDGVFHTASPV-------TDDPEQMVEPAVNGAKFVINAAAEA----KV--KRVVITSSIGAVYMD  134 (342)
T ss_pred             HHHHHh-------cCCEEEEecCCC-------CCCHHHHHHHHHHHHHHHHHHHHhc----CC--CEEEEeccceeeecc
Confidence            877754       489999999964       2346788999999999999987642    33  699999997655432


Q ss_pred             CCC---CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         179 ITK---DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       179 ~~~---~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      ...   ..++.+.+++ ......+...|+.||.+.+.+++.++++.   |+.+..+.|+.|- +-
T Consensus       135 ~~~~~~~~~~E~~~~~-~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~---g~~~v~lRp~~vyGp~  195 (342)
T PLN02214        135 PNRDPEAVVDESCWSD-LDFCKNTKNWYCYGKMVAEQAAWETAKEK---GVDLVVLNPVLVLGPP  195 (342)
T ss_pred             CCCCCCcccCcccCCC-hhhccccccHHHHHHHHHHHHHHHHHHHc---CCcEEEEeCCceECCC
Confidence            110   0122221111 00011134679999999999999887765   6999999999998 53

>PLN02583 cinnamoyl-CoA reductase

Probab=99.62  E-value=3.2e-14  Score=124.75  Aligned_cols=182  Identities=10%  Similarity=-0.093  Sum_probs=122.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH--HHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW--DKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .+|+++ ||||+      ++||..+   +.+|.++|+.|++  |+.  .+..+...++...  +.++.++++|++|.+++
T Consensus         5 ~~k~vl-VTGat------G~IG~~l---v~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~   72 (297)
T PLN02583          5 SSKSVC-VMDAS------GYVGFWL---VKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSI   72 (297)
T ss_pred             CCCEEE-EECCC------CHHHHHH---HHHHHhCCCEEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHH
Confidence            467788 99999      9999999   6667788888864  642  2232333333211  34688899999999887


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc-
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY-  178 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~-  178 (292)
                      .+++       ...|.++|.++...   +. ...++..+++|+.|++++++++.+.+   ..  +|||++||.++.... 
T Consensus        73 ~~~l-------~~~d~v~~~~~~~~---~~-~~~~~~~~~~nv~gt~~ll~aa~~~~---~v--~riV~~SS~~a~~~~~  136 (297)
T PLN02583         73 LDAL-------KGCSGLFCCFDPPS---DY-PSYDEKMVDVEVRAAHNVLEACAQTD---TI--EKVVFTSSLTAVIWRD  136 (297)
T ss_pred             HHHH-------cCCCEEEEeCccCC---cc-cccHHHHHHHHHHHHHHHHHHHHhcC---Cc--cEEEEecchHheeccc
Confidence            6543       24788888665331   11 12467899999999999999987653   23  799999998765321 


Q ss_pred             CC-CC--CCCccccCcCCCCCC--hhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         179 IT-KD--TISKSVLSVENYSDF--WAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       179 ~~-~~--~~~~~~~~~~~~~~~--~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      .. ..  .++.+.++.   ..+  .....|+.||...+.+++.++++.   |+++++++||.|. +.
T Consensus       137 ~~~~~~~~~~E~~~~~---~~~~~~~~~~Y~~sK~~aE~~~~~~~~~~---gi~~v~lrp~~v~Gp~  197 (297)
T PLN02583        137 DNISTQKDVDERSWSD---QNFCRKFKLWHALAKTLSEKTAWALAMDR---GVNMVSINAGLLMGPS  197 (297)
T ss_pred             ccCCCCCCCCcccCCC---HHHHhhcccHHHHHHHHHHHHHHHHHHHh---CCcEEEEcCCcccCCC
Confidence            10 00  111111111   000  011269999999999999887654   7999999999998 54

>PLN02650 dihydroflavonol-4-reductase

Probab=99.61  E-value=3.1e-14  Score=127.72  Aligned_cols=189  Identities=10%  Similarity=-0.096  Sum_probs=124.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +.|+++ ||||+      +.||..+   +.+|.+.|..|+  +|+.+........+.......++.++.+|+++.+.+++
T Consensus         4 ~~k~iL-VTGat------GfIGs~l---~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~   73 (351)
T PLN02650          4 QKETVC-VTGAS------GFIGSWL---VMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDD   73 (351)
T ss_pred             CCCEEE-EeCCc------HHHHHHH---HHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHH
Confidence            356777 99999      9999999   666777887776  47655444333222111102368899999999988877


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++       .+|+|||+|+... ..  ..+..+..+++|+.++.++++++.+..   ..  .+||++||..........
T Consensus        74 ~~~-------~~d~ViH~A~~~~-~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~---~~--~r~v~~SS~~~~~~~~~~  138 (351)
T PLN02650         74 AIR-------GCTGVFHVATPMD-FE--SKDPENEVIKPTVNGMLSIMKACAKAK---TV--RRIVFTSSAGTVNVEEHQ  138 (351)
T ss_pred             HHh-------CCCEEEEeCCCCC-CC--CCCchhhhhhHHHHHHHHHHHHHHhcC---Cc--eEEEEecchhhcccCCCC
Confidence            754       3799999998642 11  123346789999999999999987642   12  699999998544322110


Q ss_pred             CC-CCccccCcCC--CCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         182 DT-ISKSVLSVEN--YSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       182 ~~-~~~~~~~~~~--~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .. +..+.+....  .....+...|+.||.+.+.+++.+++++   |++++.+.|+.|- +..
T Consensus       139 ~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~  198 (351)
T PLN02650        139 KPVYDEDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAEN---GLDFISIIPTLVVGPFI  198 (351)
T ss_pred             CCccCcccCCchhhhhccccccchHHHHHHHHHHHHHHHHHHc---CCeEEEECCCceECCCC
Confidence            00 0111110000  0000123479999999999999988764   7999999999988 643

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.61  E-value=1.2e-14  Score=128.10  Aligned_cols=175  Identities=9%  Similarity=0.053  Sum_probs=118.2

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEEEcCH---HHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFYQNCW---DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ++ ||||+      ++||.+++++   |...|  ..|++.+.   ....+..+.+.   ...++.++.+|++|++++.++
T Consensus         2 il-ItGat------G~iG~~l~~~---l~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~   68 (317)
T TIGR01181         2 IL-VTGGA------GFIGSNFVRY---ILNEHPDAEVIVLDKLTYAGNLENLADLE---DNPRYRFVKGDIGDRELVSRL   68 (317)
T ss_pred             EE-EEcCC------chHHHHHHHH---HHHhCCCCEEEEecCCCcchhhhhhhhhc---cCCCcEEEEcCCcCHHHHHHH
Confidence            55 99999      9999999554   54554  55654321   11111122221   123678899999999999888


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++..     ++|+|||+|+....  +.+.+..+..+++|+.++..+++++.....   .  .++|++||...........
T Consensus        69 ~~~~-----~~d~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~--~~~i~~Ss~~v~g~~~~~~  136 (317)
T TIGR01181        69 FTEH-----QPDAVVHFAAESHV--DRSISGPAAFIETNVVGTYTLLEAVRKYWH---E--FRFHHISTDEVYGDLEKGD  136 (317)
T ss_pred             Hhhc-----CCCEEEEcccccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHhcCC---C--ceEEEeeccceeCCCCCCC
Confidence            7664     58999999997532  223455678899999999999987765432   2  5899999975443221100


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ....+       ....+...|+.+|.+.+.+++.++++.   ++++..+.|+.+-
T Consensus       137 ~~~e~-------~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~R~~~i~  181 (317)
T TIGR01181       137 AFTET-------TPLAPSSPYSASKAASDHLVRAYHRTY---GLPALITRCSNNY  181 (317)
T ss_pred             CcCCC-------CCCCCCCchHHHHHHHHHHHHHHHHHh---CCCeEEEEecccc
Confidence            01111       112255689999999999999988765   5889999999877

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PLN02240 UDP-glucose 4-epimerase

Probab=99.60  E-value=4.9e-14  Score=126.35  Aligned_cols=180  Identities=12%  Similarity=0.069  Sum_probs=119.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhC--CCCceEEEEccCCChH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEK--PSAQCIAMELDLCRLK   97 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~   97 (292)
                      .+.+++++ ||||+      ++||..+   +.+|.++|+.|++  |......+..+++....  ...++.++.+|+++.+
T Consensus         2 ~~~~~~vl-ItGat------G~iG~~l---~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   71 (352)
T PLN02240          2 SLMGRTIL-VTGGA------GYIGSHT---VLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKE   71 (352)
T ss_pred             CCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHH
Confidence            46788988 99999      9999999   5556677877764  32211111222222211  1346888999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      ++.+++++.     .+|+|||+||....  ..+.++.+..+++|+.++..+++++.    +.+.  .++|++||...+ +
T Consensus        72 ~l~~~~~~~-----~~d~vih~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~~v~~Ss~~vy-g  137 (352)
T PLN02240         72 ALEKVFAST-----RFDAVIHFAGLKAV--GESVAKPLLYYDNNLVGTINLLEVMA----KHGC--KKLVFSSSATVY-G  137 (352)
T ss_pred             HHHHHHHhC-----CCCEEEEccccCCc--cccccCHHHHHHHHHHHHHHHHHHHH----HcCC--CEEEEEccHHHh-C
Confidence            998887653     69999999997532  12445678899999999999888653    3333  689999996543 2


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCC
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCC  234 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG  234 (292)
                      ......++.       +....+...|+.+|.+.+.+++.++.+..  ++.+..+.|+
T Consensus       138 ~~~~~~~~E-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~~R~~  185 (352)
T PLN02240        138 QPEEVPCTE-------EFPLSATNPYGRTKLFIEEICRDIHASDP--EWKIILLRYF  185 (352)
T ss_pred             CCCCCCCCC-------CCCCCCCCHHHHHHHHHHHHHHHHHHhcC--CCCEEEEeec
Confidence            211111111       22233567899999999999998876522  4666666554

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.60  E-value=5.9e-14  Score=129.32  Aligned_cols=195  Identities=8%  Similarity=-0.035  Sum_probs=129.3

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c---CHHH----H---------HHHHHHHHhh
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N---CWDK----A---------NDAISKILTE   80 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r---~~~~----~---------~~~~~~l~~~   80 (292)
                      ...++++++++ ||||+      ++||..+   +.+|.+.|+.|++  +   ....    .         .+..+.+.+.
T Consensus        41 ~~~~~~~k~VL-VTGat------GfIGs~L---v~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  110 (442)
T PLN02572         41 SSSSSKKKKVM-VIGGD------GYCGWAT---ALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEV  110 (442)
T ss_pred             CCccccCCEEE-EECCC------cHHHHHH---HHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHh
Confidence            35778999998 99999      9999999   6667777877764  1   1100    0         0111112111


Q ss_pred             CCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCC-CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc
Q psy4251          81 KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL-GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG  159 (292)
Q Consensus        81 ~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~-~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~  159 (292)
                       .+.++.++.+|++|.+++.++++++     ++|+|||+|+.... ....+.++++..+++|+.|+.++++++...-   
T Consensus       111 -~~~~v~~v~~Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g---  181 (442)
T PLN02572        111 -SGKEIELYVGDICDFEFLSEAFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA---  181 (442)
T ss_pred             -hCCcceEEECCCCCHHHHHHHHHhC-----CCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC---
Confidence             1346889999999999998888764     58999999976432 2233445567788999999999999876531   


Q ss_pred             CCCCcEEEEEcCcccccccCC---CCCCCccccCcCC--CCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCC
Q psy4251         160 AKLFARVVVVSSESHRYSYIT---KDTISKSVLSVEN--YSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCC  234 (292)
Q Consensus       160 ~~~~~~iV~vsS~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG  234 (292)
                      ..  .++|++||...+.....   ...+..+....+.  .....+...|+.||.+.+.+++.+++.+   |+.+..+.|+
T Consensus       182 v~--~~~V~~SS~~vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~---gl~~v~lR~~  256 (442)
T PLN02572        182 PD--CHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQG  256 (442)
T ss_pred             CC--ccEEEEecceecCCCCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhc---CCCEEEEecc
Confidence            12  48999999865532110   0000000000000  0122345689999999999998877664   6999999999


Q ss_pred             ccc
Q psy4251         235 WKI  237 (292)
Q Consensus       235 ~v~  237 (292)
                      .|-
T Consensus       257 ~vy  259 (442)
T PLN02572        257 VVY  259 (442)
T ss_pred             ccc
Confidence            987

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.60  E-value=2.7e-14  Score=128.23  Aligned_cols=184  Identities=10%  Similarity=0.074  Sum_probs=121.5

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE-EE-EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL-FY-QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~-v~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||+      ++||..+   +.+|..+|.. ++ .++..+... ...+....++.++.++++|++|.+++++++
T Consensus         2 ~~vl-VtGat------GfIG~~l---~~~L~~~g~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   70 (355)
T PRK10217          2 RKIL-ITGGA------GFIGSAL---VRYIINETSDAVVVVDKLTYAGN-LMSLAPVAQSERFAFEKVDICDRAELARVF   70 (355)
T ss_pred             cEEE-EEcCC------cHHHHHH---HHHHHHcCCCEEEEEecCccccc-hhhhhhcccCCceEEEECCCcChHHHHHHH
Confidence            4577 99999      9999999   6666677754 32 232211111 111111112346888999999999988887


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHH---hcCCCCcEEEEEcCcccccccCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI---KGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~---~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +..     ++|+|||+||....  ..+.++++..+++|+.++..+++++.+.+.   +......++|++||.+.+.....
T Consensus        71 ~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~  143 (355)
T PRK10217         71 TEH-----QPDCVMHLAAESHV--DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHS  143 (355)
T ss_pred             hhc-----CCCEEEECCcccCc--chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCC
Confidence            652     59999999997532  223456788999999999999999987542   11110158999999754432110


Q ss_pred             CC-CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         181 KD-TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       181 ~~-~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .. .+..       .....+...|+.||.+.+.+++.+++++   ++++..+.|+.+-
T Consensus       144 ~~~~~~E-------~~~~~p~s~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~v~  191 (355)
T PRK10217        144 TDDFFTE-------TTPYAPSSPYSASKASSDHLVRAWLRTY---GLPTLITNCSNNY  191 (355)
T ss_pred             CCCCcCC-------CCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCeEEEeeeeee
Confidence            00 0111       1122356789999999999999998776   4777888888776

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.59  E-value=8.8e-14  Score=124.87  Aligned_cols=189  Identities=14%  Similarity=-0.036  Sum_probs=125.0

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      -++++++ ||||+      +.||..+   +.+|.+.|+.|++  |+.++.+....++..   +.++.++++|+++.+++.
T Consensus         8 ~~~~~vL-VtG~~------GfIG~~l---~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~   74 (353)
T PLN02896          8 SATGTYC-VTGAT------GYIGSWL---VKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFD   74 (353)
T ss_pred             cCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHH
Confidence            3567888 99999      9999999   6667778887764  776655554444421   347889999999998887


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCC---CCcch--hhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSH---TEDGF--ETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~---~~~~~--~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++       .+|+|||+|+........   +.+.+  ...+++|+.++..+++++.+..   ..  ++||++||.+.+
T Consensus        75 ~~~~-------~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~---~~--~~~v~~SS~~vy  142 (353)
T PLN02896         75 EAVK-------GCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK---TV--KRVVFTSSISTL  142 (353)
T ss_pred             HHHc-------CCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC---Cc--cEEEEEechhhc
Confidence            7753       479999999976432211   22222  3455667789999988876542   23  699999998665


Q ss_pred             cccCCCC----CCCccccCcCC--CCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         176 YSYITKD----TISKSVLSVEN--YSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       176 ~~~~~~~----~~~~~~~~~~~--~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      .......    .++.+...+-.  ....++...|+.||.+.+.+++.++++.   |+.+.++.|+.|- +.
T Consensus       143 g~~~~~~~~~~~~~E~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vyGp~  210 (353)
T PLN02896        143 TAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN---GIDLVSVITTTVAGPF  210 (353)
T ss_pred             cccccCCCCCCccCcccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc---CCeEEEEcCCcccCCC
Confidence            4321100    01111111100  0000123479999999999999888765   6999999999888 54

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.59  E-value=3.4e-14  Score=127.08  Aligned_cols=168  Identities=11%  Similarity=-0.019  Sum_probs=112.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH-----HHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD-----KANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~-----~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      |+++ ||||+      +.||..+   +.+|.+.|+.|++  |+.+     ..+...+++.. ..+..+.++++|++|.++
T Consensus         1 ~~vl-VTGat------GfIG~~l---~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~   69 (343)
T TIGR01472         1 KIAL-ITGIT------GQDGSYL---AEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHN-VNKARMKLHYGDLTDSSN   69 (343)
T ss_pred             CeEE-EEcCC------CcHHHHH---HHHHHHCCCEEEEEecCCcccchhhhhhhhhcccc-ccccceeEEEeccCCHHH
Confidence            4677 99999      9999999   6667778877764  5432     22222111111 012468899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.++++.+     ++|+|||+|+......  ..+.-...+++|+.|+..+++++.+.-.+ +.  .++|++||...+...
T Consensus        70 l~~~~~~~-----~~d~ViH~Aa~~~~~~--~~~~~~~~~~~n~~gt~~ll~a~~~~~~~-~~--~~~v~~SS~~vyg~~  139 (343)
T TIGR01472        70 LRRIIDEI-----KPTEIYNLAAQSHVKV--SFEIPEYTADVDGIGTLRLLEAVRTLGLI-KS--VKFYQASTSELYGKV  139 (343)
T ss_pred             HHHHHHhC-----CCCEEEECCcccccch--hhhChHHHHHHHHHHHHHHHHHHHHhCCC-cC--eeEEEeccHHhhCCC
Confidence            98887775     4899999999764321  22223567789999999999998764211 11  489999998655322


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY  222 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~  222 (292)
                      . ....+.       .....+...|+.||.+.+.+++.+++++.
T Consensus       140 ~-~~~~~E-------~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~  175 (343)
T TIGR01472       140 Q-EIPQNE-------TTPFYPRSPYAAAKLYAHWITVNYREAYG  175 (343)
T ss_pred             C-CCCCCC-------CCCCCCCChhHHHHHHHHHHHHHHHHHhC
Confidence            1 001111       12233567899999999999999988763

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.57  E-value=1.5e-13  Score=122.55  Aligned_cols=187  Identities=12%  Similarity=-0.067  Sum_probs=122.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++++++ ||||+      +.||..+   +.+|.+.|+.|+  +|+.+...... .+.......++.++.+|++|.+++.+
T Consensus         8 ~~~~vl-ItG~~------GfIG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~   76 (338)
T PLN00198          8 GKKTAC-VIGGT------GFLASLL---IKLLLQKGYAVNTTVRDPENQKKIA-HLRALQELGDLKIFGADLTDEESFEA   76 (338)
T ss_pred             CCCeEE-EECCc------hHHHHHH---HHHHHHCCCEEEEEECCCCCHHHHH-HHHhcCCCCceEEEEcCCCChHHHHH
Confidence            478888 99999      9999999   556667787774  46643322211 11111001268889999999988777


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC-
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT-  180 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~-  180 (292)
                      +++       ++|+|||+|+...   ....+.....+++|+.++..+++++.+.   ...  ++||++||.+.+..... 
T Consensus        77 ~~~-------~~d~vih~A~~~~---~~~~~~~~~~~~~nv~g~~~ll~a~~~~---~~~--~~~v~~SS~~~~g~~~~~  141 (338)
T PLN00198         77 PIA-------GCDLVFHVATPVN---FASEDPENDMIKPAIQGVHNVLKACAKA---KSV--KRVILTSSAAAVSINKLS  141 (338)
T ss_pred             HHh-------cCCEEEEeCCCCc---cCCCChHHHHHHHHHHHHHHHHHHHHhc---CCc--cEEEEeecceeeeccCCC
Confidence            653       4799999998531   1122334567899999999999997653   123  79999999866542210 


Q ss_pred             --CCCCCccccCcC--CCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         181 --KDTISKSVLSVE--NYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       181 --~~~~~~~~~~~~--~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                        ....+.+.+..+  .....++...|+.||.+.+.+++.+++++   |+.++.+.|+.|- +-
T Consensus       142 ~~~~~~~E~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        142 GTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEEN---NIDLITVIPTLMAGPS  202 (338)
T ss_pred             CCCceeccccCCchhhhhhcCCccchhHHHHHHHHHHHHHHHHhc---CceEEEEeCCceECCC
Confidence              000011100000  00011256679999999999999988764   6999999999998 53

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.55  E-value=1.5e-13  Score=123.33  Aligned_cols=187  Identities=10%  Similarity=0.075  Sum_probs=119.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE-EEE--cCH--HHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL-FYQ--NCW--DKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~-v~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +++ ||||+      ++||..+   +.+|.+.|.. |+.  +..  ...+    .+....++.++.++.+|++|.+++.+
T Consensus         2 kil-ITGgt------G~iG~~l---~~~L~~~g~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~Dl~d~~~~~~   67 (352)
T PRK10084          2 KIL-VTGGA------GFIGSAV---VRHIINNTQDSVVNVDKLTYAGNLE----SLADVSDSERYVFEHADICDRAELDR   67 (352)
T ss_pred             eEE-EECCC------cHHhHHH---HHHHHHhCCCeEEEecCCCccchHH----HHHhcccCCceEEEEecCCCHHHHHH
Confidence            466 99999      9999999   5556566643 432  211  1111    12222223467889999999999988


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC---CCCcEEEEEcCccccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA---KLFARVVVVSSESHRYSY  178 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~---~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++.     .+|+|||+||.....  ...++.+..+++|+.++.++++++.+.+.+..   ....++|++||...+...
T Consensus        68 ~~~~~-----~~d~vih~A~~~~~~--~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~  140 (352)
T PRK10084         68 IFAQH-----QPDAVMHLAAESHVD--RSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDL  140 (352)
T ss_pred             HHHhc-----CCCEEEECCcccCCc--chhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCC
Confidence            87652     699999999975321  12234577899999999999999987753211   101589999997554321


Q ss_pred             CCCCCCC-cccc-CcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         179 ITKDTIS-KSVL-SVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       179 ~~~~~~~-~~~~-~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ....+.. .... ..+++..+.+...|+.||.+.+.+++.+++++   |+.+..+.|+.|-
T Consensus       141 ~~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~vilr~~~v~  198 (352)
T PRK10084        141 PHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTY---GLPTIVTNCSNNY  198 (352)
T ss_pred             CccccccccccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEecccee
Confidence            1000000 0000 00112234466789999999999999998775   4666667777665

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.54  E-value=2.4e-13  Score=120.38  Aligned_cols=187  Identities=13%  Similarity=-0.017  Sum_probs=121.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhC-CCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEK-PSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~  100 (292)
                      +|++++ ||||+      +.||..+   +.+|.+.|+.|.  +|+....... ..+.... ...++.++++|+++.+++.
T Consensus         3 ~~~~il-VtGat------GfIG~~l---~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~   71 (322)
T PLN02662          3 EGKVVC-VTGAS------GYIASWL---VKLLLQRGYTVKATVRDPNDPKKT-EHLLALDGAKERLHLFKANLLEEGSFD   71 (322)
T ss_pred             CCCEEE-EECCh------HHHHHHH---HHHHHHCCCEEEEEEcCCCchhhH-HHHHhccCCCCceEEEeccccCcchHH
Confidence            578888 99999      9999999   666777888775  4664432222 2222111 1247889999999998877


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc-cccC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR-YSYI  179 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~-~~~~  179 (292)
                      .+++       .+|+|||+|+.....   ..+..+..+++|+.++..+++++....   ..  .+||++||.++. .+..
T Consensus        72 ~~~~-------~~d~Vih~A~~~~~~---~~~~~~~~~~~nv~gt~~ll~a~~~~~---~~--~~~v~~SS~~~~~y~~~  136 (322)
T PLN02662         72 SVVD-------GCEGVFHTASPFYHD---VTDPQAELIDPAVKGTLNVLRSCAKVP---SV--KRVVVTSSMAAVAYNGK  136 (322)
T ss_pred             HHHc-------CCCEEEEeCCcccCC---CCChHHHHHHHHHHHHHHHHHHHHhCC---CC--CEEEEccCHHHhcCCCc
Confidence            6654       479999999975311   112235788999999999999876431   23  699999998642 2211


Q ss_pred             CC-C--CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         180 TK-D--TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       180 ~~-~--~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      +. .  .++.+.... ....-.....|+.+|.+.+.+++.+.++.   |++++.+.|+.+- +..
T Consensus       137 ~~~~~~~~~E~~~~~-p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lRp~~v~Gp~~  197 (322)
T PLN02662        137 PLTPDVVVDETWFSD-PAFCEESKLWYVLSKTLAEEAAWKFAKEN---GIDMVTINPAMVIGPLL  197 (322)
T ss_pred             CCCCCCcCCcccCCC-hhHhhcccchHHHHHHHHHHHHHHHHHHc---CCcEEEEeCCcccCCCC
Confidence            10 0  011111000 00000012479999999999988877654   6999999999998 643

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.52  E-value=3.3e-13  Score=113.47  Aligned_cols=179  Identities=12%  Similarity=0.105  Sum_probs=126.8

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC---HHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC---WDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      +++ ||||.      +=||....+.+...-.. .+|++-+   -..-.+....+.   ...++.|+++|++|.+.+.+++
T Consensus         2 ~iL-VTGGa------GFIGsnfvr~~~~~~~d-~~v~~~DkLTYAgn~~~l~~~~---~~~~~~fv~~DI~D~~~v~~~~   70 (340)
T COG1088           2 KIL-VTGGA------GFIGSNFVRYILNKHPD-DHVVNLDKLTYAGNLENLADVE---DSPRYRFVQGDICDRELVDRLF   70 (340)
T ss_pred             cEE-EecCc------chHHHHHHHHHHhcCCC-ceEEEEecccccCCHHHHHhhh---cCCCceEEeccccCHHHHHHHH
Confidence            466 99999      88888887766555443 3333211   111111122222   2459999999999999999888


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      ++.     .+|++||-|+-.+  -+.+.++-+.-+++|++|++.|+++...+..+     -|++.||+...+...     
T Consensus        71 ~~~-----~~D~VvhfAAESH--VDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~-----frf~HISTDEVYG~l-----  133 (340)
T COG1088          71 KEY-----QPDAVVHFAAESH--VDRSIDGPAPFIQTNVVGTYTLLEAARKYWGK-----FRFHHISTDEVYGDL-----  133 (340)
T ss_pred             Hhc-----CCCeEEEechhcc--ccccccChhhhhhcchHHHHHHHHHHHHhccc-----ceEEEeccccccccc-----
Confidence            775     6999999998764  34456666788999999999999999877631     389999998655432     


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                       ..++....+..++++.+.|++||++..++++++.+.+   |+.+...++..--
T Consensus       134 -~~~~~~FtE~tp~~PsSPYSASKAasD~lVray~~TY---glp~~ItrcSNNY  183 (340)
T COG1088         134 -GLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTY---GLPATITRCSNNY  183 (340)
T ss_pred             -cCCCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHHc---CCceEEecCCCCc
Confidence             1221112245678889999999999999999999987   4777777766433

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.47  E-value=2.2e-12  Score=114.98  Aligned_cols=177  Identities=12%  Similarity=0.066  Sum_probs=113.7

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      ++||..+   +.+|.+.|+.|++  |..+........+.+. ++.++.++.+|++|.+++.++++
T Consensus         2 ~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~   70 (338)
T PRK10675          2 RVL-VTGGS------GYIGSHT---CVQLLQNGHDVVILDNLCNSKRSVLPVIERL-GGKHPTFVEGDIRNEALLTEILH   70 (338)
T ss_pred             eEE-EECCC------ChHHHHH---HHHHHHCCCeEEEEecCCCchHhHHHHHHHh-cCCCceEEEccCCCHHHHHHHHh
Confidence            466 99999      9999999   5556677877764  3211122222223222 23467888999999998888765


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      .     .++|+|||+||......  ..+.....+++|+.++..+++++.    +.+.  .+||++||...+... ....+
T Consensus        71 ~-----~~~d~vvh~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~~v~~Ss~~~yg~~-~~~~~  136 (338)
T PRK10675         71 D-----HAIDTVIHFAGLKAVGE--SVQKPLEYYDNNVNGTLRLISAMR----AANV--KNLIFSSSATVYGDQ-PKIPY  136 (338)
T ss_pred             c-----CCCCEEEECCccccccc--hhhCHHHHHHHHHHHHHHHHHHHH----HcCC--CEEEEeccHHhhCCC-CCCcc
Confidence            4     36999999999753211  223456788999999999887654    3344  689999997544221 11111


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCcc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWK  236 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v  236 (292)
                      +.+...      ..+...|+.+|.+.+.+++.++++..  ++++..+.|+.+
T Consensus       137 ~E~~~~------~~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~~ilR~~~v  180 (338)
T PRK10675        137 VESFPT------GTPQSPYGKSKLMVEQILTDLQKAQP--DWSIALLRYFNP  180 (338)
T ss_pred             ccccCC------CCCCChhHHHHHHHHHHHHHHHHhcC--CCcEEEEEeeee
Confidence            111110      02456899999999999999876643  356666655433

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.46  E-value=2.2e-12  Score=115.58  Aligned_cols=181  Identities=10%  Similarity=-0.005  Sum_probs=120.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhC---CCCceEEEEccCCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEK---PSAQCIAMELDLCR   95 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dls~   95 (292)
                      ..+++++++ ||||+      +=||..+   +.+|..+|..|++  |..........++....   ...++.++.+|+.|
T Consensus        11 ~~~~~~~vl-VtGat------GfiG~~l---v~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (348)
T PRK15181         11 LVLAPKRWL-ITGVA------GFIGSGL---LEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK   80 (348)
T ss_pred             ccccCCEEE-EECCc------cHHHHHH---HHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence            456778988 99999      7777777   7777778877764  43222111122221111   11368899999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      .+++.++++       .+|+|||.|+......  ..++.+..+++|+.|+..+++.+..    .+.  .++|++||...+
T Consensus        81 ~~~l~~~~~-------~~d~ViHlAa~~~~~~--~~~~~~~~~~~Nv~gt~nll~~~~~----~~~--~~~v~~SS~~vy  145 (348)
T PRK15181         81 FTDCQKACK-------NVDYVLHQAALGSVPR--SLKDPIATNSANIDGFLNMLTAARD----AHV--SSFTYAASSSTY  145 (348)
T ss_pred             HHHHHHHhh-------CCCEEEECccccCchh--hhhCHHHHHHHHHHHHHHHHHHHHH----cCC--CeEEEeechHhh
Confidence            887766653       3799999999754322  2233456799999999999988743    233  699999997655


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..... ..+..       +....+...|+.||.+.+.+++.++++.   |+++..+.|+.+-
T Consensus       146 g~~~~-~~~~e-------~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lR~~~vy  196 (348)
T PRK15181        146 GDHPD-LPKIE-------ERIGRPLSPYAVTKYVNELYADVFARSY---EFNAIGLRYFNVF  196 (348)
T ss_pred             CCCCC-CCCCC-------CCCCCCCChhhHHHHHHHHHHHHHHHHh---CCCEEEEEeccee
Confidence            32211 00111       1112255689999999999998876654   6899999999887

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.45  E-value=2.2e-12  Score=114.15  Aligned_cols=174  Identities=14%  Similarity=0.105  Sum_probs=117.0

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      ++ ||||+      ++||..+   +..|.+.|..|+.  |......+....+.+.   .++..+.+|+++.+++.++++.
T Consensus         2 vl-V~Gat------G~iG~~l---~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~   68 (328)
T TIGR01179         2 IL-VTGGA------GYIGSHT---VRQLLESGHEVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEE   68 (328)
T ss_pred             EE-EeCCC------CHHHHHH---HHHHHhCCCeEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHh
Confidence            55 99999      9999999   5556677777764  2221111112222211   2577889999999999888764


Q ss_pred             HHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCC
Q psy4251         106 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS  185 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~  185 (292)
                           .++|++|||||......  +.+.....+.+|+.++..+++++.    +.+.  .++|++||...+... ......
T Consensus        69 -----~~~d~vv~~ag~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~~v~~ss~~~~g~~-~~~~~~  134 (328)
T TIGR01179        69 -----HKIDAVIHFAGLIAVGE--SVQDPLKYYRNNVVNTLNLLEAMQ----QTGV--KKFIFSSSAAVYGEP-SSIPIS  134 (328)
T ss_pred             -----CCCcEEEECccccCcch--hhcCchhhhhhhHHHHHHHHHHHH----hcCC--CEEEEecchhhcCCC-CCCCcc
Confidence                 46999999999763222  333456788999999999988754    2333  699999886544221 111111


Q ss_pred             ccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         186 KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       186 ~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .       +....+...|+.+|.+.+.+++.++++.  .++++..+.|+.+-
T Consensus       135 e-------~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~~~~~~ilR~~~v~  177 (328)
T TIGR01179       135 E-------DSPLGPINPYGRSKLMSERILRDLSKAD--PGLSYVILRYFNVA  177 (328)
T ss_pred             c-------cCCCCCCCchHHHHHHHHHHHHHHHHhc--cCCCEEEEecCccc
Confidence            1       1122255689999999999999987663  26889999998776

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>KOG1502|consensus

Probab=99.44  E-value=4.2e-12  Score=109.79  Aligned_cols=185  Identities=12%  Similarity=-0.043  Sum_probs=130.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHH--HHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKAND--AISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~--~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .++++. ||||+      +=||..+   +..|+.+|+.|.+  |+++.-+.  .+.++...  +.+...+..||.++++.
T Consensus         5 ~~~~Vc-VTGAs------GfIgswi---vk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a--~~~l~l~~aDL~d~~sf   72 (327)
T KOG1502|consen    5 EGKKVC-VTGAS------GFIGSWI---VKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGA--KERLKLFKADLLDEGSF   72 (327)
T ss_pred             CCcEEE-EeCCc------hHHHHHH---HHHHHhCCCEEEEEEcCcchhhhHHHHHhcccC--cccceEEeccccccchH
Confidence            566777 99999      5566666   8889999999974  88766333  24444433  44699999999999998


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchh-hhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFE-TTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~-~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++.++.       .|+|+|.|..+..    +.++.+ +.+...+.|+.++++++...-   .-  -|||++||.++....
T Consensus        73 ~~ai~g-------cdgVfH~Asp~~~----~~~~~e~~li~pav~Gt~nVL~ac~~~~---sV--krvV~TSS~aAv~~~  136 (327)
T KOG1502|consen   73 DKAIDG-------CDGVFHTASPVDF----DLEDPEKELIDPAVKGTKNVLEACKKTK---SV--KRVVYTSSTAAVRYN  136 (327)
T ss_pred             HHHHhC-------CCEEEEeCccCCC----CCCCcHHhhhhHHHHHHHHHHHHHhccC---Cc--ceEEEeccHHHhccC
Confidence            888654       7999999997632    111133 688889999999999876432   23  799999999887654


Q ss_pred             CCCC----CCCccccCcCCCCCC--hhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         179 ITKD----TISKSVLSVENYSDF--WAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       179 ~~~~----~~~~~~~~~~~~~~~--~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .+..    .++.+.++.   ..|  .....|+.||...+.-++.++++.   |+...+|+||.|- +....
T Consensus       137 ~~~~~~~~vvdE~~wsd---~~~~~~~~~~Y~~sK~lAEkaAw~fa~e~---~~~lv~inP~lV~GP~l~~  201 (327)
T KOG1502|consen  137 GPNIGENSVVDEESWSD---LDFCRCKKLWYALSKTLAEKAAWEFAKEN---GLDLVTINPGLVFGPGLQP  201 (327)
T ss_pred             CcCCCCCcccccccCCc---HHHHHhhHHHHHHHHHHHHHHHHHHHHhC---CccEEEecCCceECCCccc
Confidence            2211    122222221   000  012579999999999999999886   6999999999999 65554

>PLN02686 cinnamoyl-CoA reductase

Probab=99.44  E-value=8.7e-12  Score=112.51  Aligned_cols=190  Identities=9%  Similarity=-0.096  Sum_probs=122.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhC----CCCceEEEEccCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEK----PSAQCIAMELDLC   94 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dls   94 (292)
                      .+.++|+++ ||||+      ++||..+   +.+|.+.|+.|+  .|+.+..+.+ +++....    ....+.++++|++
T Consensus        49 ~~~~~k~VL-VTGat------GfIG~~l---v~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~  117 (367)
T PLN02686         49 ADAEARLVC-VTGGV------SFLGLAI---VDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLT  117 (367)
T ss_pred             cCCCCCEEE-EECCc------hHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCC
Confidence            456788988 99999      9999999   666778888875  4776554443 2332110    0135788999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      |.+++.++++.       +|.++|.|+...+.....  ......++|+.++..+++++...   .+.  .|+|++||..+
T Consensus       118 d~~~l~~~i~~-------~d~V~hlA~~~~~~~~~~--~~~~~~~~nv~gt~~llea~~~~---~~v--~r~V~~SS~~~  183 (367)
T PLN02686        118 EPESLHEAFDG-------CAGVFHTSAFVDPAGLSG--YTKSMAELEAKASENVIEACVRT---ESV--RKCVFTSSLLA  183 (367)
T ss_pred             CHHHHHHHHHh-------ccEEEecCeeeccccccc--ccchhhhhhHHHHHHHHHHHHhc---CCc--cEEEEeccHHH
Confidence            99988877653       689999988764322111  11244677888888888876432   123  69999999742


Q ss_pred             -cccc--CCC--CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         175 -RYSY--ITK--DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       175 -~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                       ..+.  ...  ..++.+.+.. ......+...|+.||.+.+.+++.++++.   |++++++.|+.|- +-
T Consensus       184 ~vyg~~~~~~~~~~i~E~~~~~-~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gl~~v~lRp~~vyGp~  250 (367)
T PLN02686        184 CVWRQNYPHDLPPVIDEESWSD-ESFCRDNKLWYALGKLKAEKAAWRAARGK---GLKLATICPALVTGPG  250 (367)
T ss_pred             hcccccCCCCCCcccCCCCCCC-hhhcccccchHHHHHHHHHHHHHHHHHhc---CceEEEEcCCceECCC
Confidence             2211  000  0011111111 00011134579999999999999887763   7999999999999 53

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.42  E-value=6.2e-12  Score=107.55  Aligned_cols=170  Identities=14%  Similarity=0.045  Sum_probs=104.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++.++++++ ||||+      ++||+.+   +.+|...|+.|+  .|+.++..+..    ..  +.++.++++|+++.. 
T Consensus        13 ~~~~~~~il-ItGas------G~iG~~l---~~~L~~~g~~V~~~~R~~~~~~~~~----~~--~~~~~~~~~Dl~d~~-   75 (251)
T PLN00141         13 ENVKTKTVF-VAGAT------GRTGKRI---VEQLLAKGFAVKAGVRDVDKAKTSL----PQ--DPSLQIVRADVTEGS-   75 (251)
T ss_pred             ccccCCeEE-EECCC------cHHHHHH---HHHHHhCCCEEEEEecCHHHHHHhc----cc--CCceEEEEeeCCCCH-
Confidence            456788888 99999      9999999   555667787775  47776544322    11  236888999999842 


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                       ..+.+.+.   ..+|+||+|+|.....   +   ....+.+|+.+...+++++.    +.+.  ++||++||.......
T Consensus        76 -~~l~~~~~---~~~d~vi~~~g~~~~~---~---~~~~~~~n~~~~~~ll~a~~----~~~~--~~iV~iSS~~v~g~~  139 (251)
T PLN00141         76 -DKLVEAIG---DDSDAVICATGFRRSF---D---PFAPWKVDNFGTVNLVEACR----KAGV--TRFILVSSILVNGAA  139 (251)
T ss_pred             -HHHHHHhh---cCCCEEEECCCCCcCC---C---CCCceeeehHHHHHHHHHHH----HcCC--CEEEEEccccccCCC
Confidence             22222221   2699999999864211   1   12235788888888888763    3344  799999998643221


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHH-HHHHHhH-hcCCCeEEEEecCCccc-cc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLF-GEKLATL-WYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~-~~~la~~-~~~~gi~v~~v~PG~v~-~~  239 (292)
                      ...         +       ....|...|.....+ .+..+.+ +...|++++.|.||++. +.
T Consensus       140 ~~~---------~-------~~~~~~~~~~~~~~~~~k~~~e~~l~~~gi~~~iirpg~~~~~~  187 (251)
T PLN00141        140 MGQ---------I-------LNPAYIFLNLFGLTLVAKLQAEKYIRKSGINYTIVRPGGLTNDP  187 (251)
T ss_pred             ccc---------c-------cCcchhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECCCccCCC
Confidence            000         0       112344434322222 1212221 34558999999999998 54

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.42  E-value=4.9e-12  Score=112.04  Aligned_cols=169  Identities=14%  Similarity=-0.034  Sum_probs=115.6

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      ++||..+   +..|.+.|+.|++  |+.+...    .+.    ...+.++++|+++.+++.++++
T Consensus         2 ~vl-ItG~~------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~----~~~----~~~~~~~~~D~~~~~~l~~~~~   63 (328)
T TIGR03466         2 KVL-VTGAT------GFVGSAV---VRLLLEQGEEVRVLVRPTSDRR----NLE----GLDVEIVEGDLRDPASLRKAVA   63 (328)
T ss_pred             eEE-EECCc------cchhHHH---HHHHHHCCCEEEEEEecCcccc----ccc----cCCceEEEeeCCCHHHHHHHHh
Confidence            566 99999      9999999   5556677777764  5543321    111    2357889999999988777654


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                             .+|+|||+|+...    ...++.+..+++|+.++..+++++..    ...  +++|++||............+
T Consensus        64 -------~~d~vi~~a~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~--~~~v~~SS~~~~~~~~~~~~~  126 (328)
T TIGR03466        64 -------GCRALFHVAADYR----LWAPDPEEMYAANVEGTRNLLRAALE----AGV--ERVVYTSSVATLGVRGDGTPA  126 (328)
T ss_pred             -------CCCEEEEeceecc----cCCCCHHHHHHHHHHHHHHHHHHHHH----hCC--CeEEEEechhhcCcCCCCCCc
Confidence                   4799999998542    12345678899999999999888653    233  799999998665421110111


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      +.+....    .......|+.+|.+.+.+++.++.+.   |+++..+.|+.+-
T Consensus       127 ~e~~~~~----~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilR~~~~~  172 (328)
T TIGR03466       127 DETTPSS----LDDMIGHYKRSKFLAEQAALEMAAEK---GLPVVIVNPSTPI  172 (328)
T ss_pred             CccCCCC----cccccChHHHHHHHHHHHHHHHHHhc---CCCEEEEeCCccC
Confidence            1111100    00123479999999999999887653   6889999999876

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.40  E-value=2.6e-12  Score=111.41  Aligned_cols=179  Identities=13%  Similarity=-0.034  Sum_probs=118.0

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  107 (292)
                      |||||+      +=||..+   +.+|.+.|  ..|-+.+..........+..   .....++++|++|.+++.++++   
T Consensus         1 LVTGgs------GflG~~i---v~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~---~~~~~~~~~Di~d~~~l~~a~~---   65 (280)
T PF01073_consen    1 LVTGGS------GFLGSHI---VRQLLERGYIYEVRVLDRSPPPKFLKDLQK---SGVKEYIQGDITDPESLEEALE---   65 (280)
T ss_pred             CEEcCC------cHHHHHH---HHHHHHCCCceEEEEcccccccccchhhhc---ccceeEEEeccccHHHHHHHhc---
Confidence            499999      7788888   77777888  44443222111111112211   1233389999999999988765   


Q ss_pred             HhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCC-c
Q psy4251         108 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS-K  186 (292)
Q Consensus       108 ~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~-~  186 (292)
                          ..|+|||+|+......   ....+..+++|+.|+-++++++...    +-  .|+|++||.++........++. .
T Consensus        66 ----g~d~V~H~Aa~~~~~~---~~~~~~~~~vNV~GT~nvl~aa~~~----~V--krlVytSS~~vv~~~~~~~~~~~~  132 (280)
T PF01073_consen   66 ----GVDVVFHTAAPVPPWG---DYPPEEYYKVNVDGTRNVLEAARKA----GV--KRLVYTSSISVVFDNYKGDPIING  132 (280)
T ss_pred             ----CCceEEEeCccccccC---cccHHHHHHHHHHHHHHHHHHHHHc----CC--CEEEEEcCcceeEeccCCCCcccC
Confidence                4699999999764322   3456789999999999999988642    34  7999999998876522211211 1


Q ss_pred             cccCcCCCCCChhhhHHHHhHHHHHHHHHHHHh-Hhc-CCCeEEEEecCCccc-cc
Q psy4251         187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLAT-LWY-KYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       187 ~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~-~~~-~~gi~v~~v~PG~v~-~~  239 (292)
                      +...+   ........|+.||+..+.++..... .+. ...++..+|+|..|- +-
T Consensus       133 dE~~~---~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~  185 (280)
T PF01073_consen  133 DEDTP---YPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPG  185 (280)
T ss_pred             CcCCc---ccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcc
Confidence            11111   1111456899999999999887665 221 124899999999888 53

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.35  E-value=1.7e-11  Score=103.36  Aligned_cols=170  Identities=13%  Similarity=0.042  Sum_probs=120.6

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  107 (292)
                      |||||+      +=||.++   +.+|.++|..|+  .|+.........+       .++.++.+|+.|.++++++++.. 
T Consensus         2 lI~Gat------G~iG~~l---~~~l~~~g~~v~~~~~~~~~~~~~~~~-------~~~~~~~~dl~~~~~~~~~~~~~-   64 (236)
T PF01370_consen    2 LITGAT------GFIGSAL---VRQLLKKGHEVIVLSRSSNSESFEEKK-------LNVEFVIGDLTDKEQLEKLLEKA-   64 (236)
T ss_dssp             EEETTT------SHHHHHH---HHHHHHTTTEEEEEESCSTGGHHHHHH-------TTEEEEESETTSHHHHHHHHHHH-
T ss_pred             EEEccC------CHHHHHH---HHHHHHcCCcccccccccccccccccc-------ceEEEEEeecccccccccccccc-
Confidence            499999      8899999   777778888865  3443322111111       17899999999999999998887 


Q ss_pred             HhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCcc
Q psy4251         108 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS  187 (292)
Q Consensus       108 ~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~  187 (292)
                          .+|.|||+|+...  ...+.+.....+..|+.+...+++.+..    .+.  .++|++||...+... ....++. 
T Consensus        65 ----~~d~vi~~a~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~--~~~i~~sS~~~y~~~-~~~~~~e-  130 (236)
T PF01370_consen   65 ----NIDVVIHLAAFSS--NPESFEDPEEIIEANVQGTRNLLEAARE----AGV--KRFIFLSSASVYGDP-DGEPIDE-  130 (236)
T ss_dssp             ----TESEEEEEBSSSS--HHHHHHSHHHHHHHHHHHHHHHHHHHHH----HTT--SEEEEEEEGGGGTSS-SSSSBET-
T ss_pred             ----CceEEEEeecccc--cccccccccccccccccccccccccccc----ccc--ccccccccccccccc-ccccccc-
Confidence                6999999999753  1112245677788888888777777653    233  699999996544332 1111111 


Q ss_pred             ccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         188 VLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       188 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                            .....+...|+.+|...+.+++.+.++.   ++++..+.|+.+- +.
T Consensus       131 ------~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  131 ------DSPINPLSPYGASKRAAEELLRDYAKKY---GLRVTILRPPNVYGPG  174 (236)
T ss_dssp             ------TSGCCHSSHHHHHHHHHHHHHHHHHHHH---TSEEEEEEESEEESTT
T ss_pred             ------cccccccccccccccccccccccccccc---cccccccccccccccc
Confidence                  1122366779999999999999988876   6999999999998 55

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.33  E-value=2.1e-11  Score=118.36  Aligned_cols=185  Identities=11%  Similarity=0.015  Sum_probs=118.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc--CcEEEEcCHH-HHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS--SKLFYQNCWD-KANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~--g~~v~~r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..++++++ ||||+      +-||..+   +.+|.+.  ++.|++.+.. .... ...+.......++.++.+|++|.+.
T Consensus         3 ~~~~~~VL-VTGat------GfIG~~l---v~~Ll~~g~~~~V~~~d~~~~~~~-~~~l~~~~~~~~v~~~~~Dl~d~~~   71 (668)
T PLN02260          3 TYEPKNIL-ITGAA------GFIASHV---ANRLIRNYPDYKIVVLDKLDYCSN-LKNLNPSKSSPNFKFVKGDIASADL   71 (668)
T ss_pred             CCCCCEEE-EECCC------cHHHHHH---HHHHHHhCCCCEEEEEeCCCccch-hhhhhhcccCCCeEEEECCCCChHH
Confidence            34578888 99999      9999999   5555554  5666653311 0111 1112111113478899999999887


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +..++..     ..+|+|||+|+......  ..++....+++|+.++..+++++...   ...  .++|++||...+...
T Consensus        72 ~~~~~~~-----~~~D~ViHlAa~~~~~~--~~~~~~~~~~~Nv~gt~~ll~a~~~~---~~v--kr~I~~SS~~vyg~~  139 (668)
T PLN02260         72 VNYLLIT-----EGIDTIMHFAAQTHVDN--SFGNSFEFTKNNIYGTHVLLEACKVT---GQI--RRFIHVSTDEVYGET  139 (668)
T ss_pred             HHHHHhh-----cCCCEEEECCCccCchh--hhhCHHHHHHHHHHHHHHHHHHHHhc---CCC--cEEEEEcchHHhCCC
Confidence            7665422     36999999999763221  12233567889999999988876432   113  699999997654322


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .......    .. +.....+...|+.+|.+.+.+++.++++.   ++.+..+.|+.|-
T Consensus       140 ~~~~~~~----~~-E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~---~l~~vilR~~~Vy  190 (668)
T PLN02260        140 DEDADVG----NH-EASQLLPTNPYSATKAGAEMLVMAYGRSY---GLPVITTRGNNVY  190 (668)
T ss_pred             ccccccC----cc-ccCCCCCCCCcHHHHHHHHHHHHHHHHHc---CCCEEEECccccc
Confidence            1100000    00 01112245679999999999999887664   5888999999887

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.33  E-value=2e-11  Score=103.32  Aligned_cols=158  Identities=16%  Similarity=0.103  Sum_probs=111.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEc-C-HHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQN-C-WDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r-~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||.      +=||.-+   +.+|.+.|+.|++- | ...-.+....+       .+.+++.|+.|.+.++++++
T Consensus         2 ~iL-VtGGA------GYIGSHt---v~~Ll~~G~~vvV~DNL~~g~~~~v~~~-------~~~f~~gDi~D~~~L~~vf~   64 (329)
T COG1087           2 KVL-VTGGA------GYIGSHT---VRQLLKTGHEVVVLDNLSNGHKIALLKL-------QFKFYEGDLLDRALLTAVFE   64 (329)
T ss_pred             eEE-EecCc------chhHHHH---HHHHHHCCCeEEEEecCCCCCHHHhhhc-------cCceEEeccccHHHHHHHHH
Confidence            456 99999      6777777   88888999888752 2 11111222111       26899999999999988887


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      +.     +||.|||.||...-..  +.+.-.+.++.|+.|+..|++++...    +.  .+|||-||.+ ..+.+....+
T Consensus        65 ~~-----~idaViHFAa~~~VgE--Sv~~Pl~Yy~NNv~gTl~Ll~am~~~----gv--~~~vFSStAa-vYG~p~~~PI  130 (329)
T COG1087          65 EN-----KIDAVVHFAASISVGE--SVQNPLKYYDNNVVGTLNLIEAMLQT----GV--KKFIFSSTAA-VYGEPTTSPI  130 (329)
T ss_pred             hc-----CCCEEEECccccccch--hhhCHHHHHhhchHhHHHHHHHHHHh----CC--CEEEEecchh-hcCCCCCccc
Confidence            75     6999999999764322  44555788999999999999887544    33  5777766654 4444333233


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY  222 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~  222 (292)
                      ..+....       +.+.|+.||++.+.+.+.+++..+
T Consensus       131 ~E~~~~~-------p~NPYG~sKlm~E~iL~d~~~a~~  161 (329)
T COG1087         131 SETSPLA-------PINPYGRSKLMSEEILRDAAKANP  161 (329)
T ss_pred             CCCCCCC-------CCCcchhHHHHHHHHHHHHHHhCC
Confidence            3333322       778899999999999999988865

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.32  E-value=4.2e-11  Score=108.83  Aligned_cols=162  Identities=10%  Similarity=-0.036  Sum_probs=111.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHH--HHHHHHhhCCCCceEEEEccCCCh
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKAND--AISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~--~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..-++++++ ||||+      +.||..+   +.+|.++|+.|+  .|+..+.+.  ..+++...  ...+.++++|++|.
T Consensus        56 ~~~~~~kVL-VtGat------G~IG~~l---~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~d~  123 (390)
T PLN02657         56 KEPKDVTVL-VVGAT------GYIGKFV---VRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE--LPGAEVVFGDVTDA  123 (390)
T ss_pred             cCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEEechhhccccchhhHHhhh--cCCceEEEeeCCCH
Confidence            445677888 99999      9999999   555667787776  476654321  11222222  23688899999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++.++++.+.   .++|+||||+|....       .....+++|+.++..+++++.    +.+.  .++|++||.....
T Consensus       124 ~~l~~~~~~~~---~~~D~Vi~~aa~~~~-------~~~~~~~vn~~~~~~ll~aa~----~~gv--~r~V~iSS~~v~~  187 (390)
T PLN02657        124 DSLRKVLFSEG---DPVDVVVSCLASRTG-------GVKDSWKIDYQATKNSLDAGR----EVGA--KHFVLLSAICVQK  187 (390)
T ss_pred             HHHHHHHHHhC---CCCcEEEECCccCCC-------CCccchhhHHHHHHHHHHHHH----HcCC--CEEEEEeeccccC
Confidence            99999887641   269999999885321       112345678888877777654    3344  7999999975331


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                                            +...|..+|...+...+.     ...+++...+.|+.+-
T Consensus       188 ----------------------p~~~~~~sK~~~E~~l~~-----~~~gl~~tIlRp~~~~  221 (390)
T PLN02657        188 ----------------------PLLEFQRAKLKFEAELQA-----LDSDFTYSIVRPTAFF  221 (390)
T ss_pred             ----------------------cchHHHHHHHHHHHHHHh-----ccCCCCEEEEccHHHh
Confidence                                  344678889888766543     2347999999998766

>PLN02427 UDP-apiose/xylose synthase

Probab=99.32  E-value=6.8e-11  Score=107.49  Aligned_cols=188  Identities=10%  Similarity=-0.055  Sum_probs=115.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      +.++.++++ ||||+      +-||..+   +.+|.++ |+.|++  |+.++............ ..++.++.+|++|.+
T Consensus        10 ~~~~~~~Vl-VTGgt------GfIGs~l---v~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~-~~~~~~~~~Dl~d~~   78 (386)
T PLN02427         10 KPIKPLTIC-MIGAG------GFIGSHL---CEKLMTETPHKVLALDVYNDKIKHLLEPDTVPW-SGRIQFHRINIKHDS   78 (386)
T ss_pred             CcccCcEEE-EECCc------chHHHHH---HHHHHhcCCCEEEEEecCchhhhhhhccccccC-CCCeEEEEcCCCChH
Confidence            445556778 99999      8889888   6667666 466653  55443322211100001 236899999999998


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .+.++++       .+|+|||+|+...+...  .++-...+..|+.++..+++++..     ..  .++|++||...+..
T Consensus        79 ~l~~~~~-------~~d~ViHlAa~~~~~~~--~~~~~~~~~~n~~gt~~ll~aa~~-----~~--~r~v~~SS~~vYg~  142 (386)
T PLN02427         79 RLEGLIK-------MADLTINLAAICTPADY--NTRPLDTIYSNFIDALPVVKYCSE-----NN--KRLIHFSTCEVYGK  142 (386)
T ss_pred             HHHHHhh-------cCCEEEEcccccChhhh--hhChHHHHHHHHHHHHHHHHHHHh-----cC--CEEEEEeeeeeeCC
Confidence            8776653       37999999997643211  112234567899999888877642     12  68999999765432


Q ss_pred             cCCCCCCCcccc-Cc--------CC--CCCC----hhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         178 YITKDTISKSVL-SV--------EN--YSDF----WAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       178 ~~~~~~~~~~~~-~~--------~~--~~~~----~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      ... .....+.. .+        +.  ...+    .+...|+.||.+.+.+++.+++.   .|+.+..+.|+.|- +-
T Consensus       143 ~~~-~~~~e~~p~~~~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilR~~~vyGp~  216 (386)
T PLN02427        143 TIG-SFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAE---NGLEFTIVRPFNWIGPR  216 (386)
T ss_pred             CcC-CCCCcccccccccccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhh---cCCceEEecccceeCCC
Confidence            110 00000000 00        00  0000    12346999999999999877654   36999999999998 53

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.31  E-value=4.8e-11  Score=107.12  Aligned_cols=180  Identities=12%  Similarity=0.008  Sum_probs=110.3

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEE--EcCHHH---HHHHHHHHHhhCC-----C-CceEEEEccCC
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFY--QNCWDK---ANDAISKILTEKP-----S-AQCIAMELDLC   94 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~--~r~~~~---~~~~~~~l~~~~~-----~-~~~~~~~~Dls   94 (292)
                      ++ |||||      ++||..+   +.+|.+.|  ..|+  +|+.+.   .+...+.+.....     . .++.++.+|++
T Consensus         2 vl-vtGat------G~lG~~l---~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~   71 (367)
T TIGR01746         2 VL-LTGAT------GFLGAYL---LEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLS   71 (367)
T ss_pred             EE-Eeccc------hHHHHHH---HHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcC
Confidence            55 99999      9999999   55566666  4454  465331   1222222221110     1 47899999998


Q ss_pred             ChHH--HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          95 RLKS--VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        95 ~~~~--v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ++..  -.....++.   ..+|++||||+....     ...++..+.+|+.++..+++.+..    ...  .++|++||.
T Consensus        72 ~~~~gl~~~~~~~~~---~~~d~vih~a~~~~~-----~~~~~~~~~~nv~g~~~ll~~a~~----~~~--~~~v~iSS~  137 (367)
T TIGR01746        72 EPRLGLSDAEWERLA---ENVDTIVHNGALVNW-----VYPYSELRAANVLGTREVLRLAAS----GRA--KPLHYVSTI  137 (367)
T ss_pred             cccCCcCHHHHHHHH---hhCCEEEeCCcEecc-----CCcHHHHhhhhhHHHHHHHHHHhh----CCC--ceEEEEccc
Confidence            7531  011122222   369999999997642     123567788999999988887643    233  569999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-c
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-T  238 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~  238 (292)
                      ......... ....++...  .........|+.+|.+.+.+++.++..    |++++.+.||.+. +
T Consensus       138 ~v~~~~~~~-~~~~~~~~~--~~~~~~~~~Y~~sK~~~E~~~~~~~~~----g~~~~i~Rpg~v~G~  197 (367)
T TIGR01746       138 SVLAAIDLS-TVTEDDAIV--TPPPGLAGGYAQSKWVAELLVREASDR----GLPVTIVRPGRILGN  197 (367)
T ss_pred             cccCCcCCC-Ccccccccc--ccccccCCChHHHHHHHHHHHHHHHhc----CCCEEEECCCceeec
Confidence            665432110 001111000  000112457999999999888775543    7999999999998 5

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.23  E-value=1.5e-10  Score=101.87  Aligned_cols=165  Identities=9%  Similarity=-0.017  Sum_probs=106.9

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcE-EE-EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL-FY-QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~-v~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  107 (292)
                      |||||+      +-||..+   +.+|.+.|.. ++ .|+.......            ..+.++|+.|..+.+.+++.+.
T Consensus         3 lVtGa~------GfiG~~l---~~~L~~~g~~~v~~~~~~~~~~~~------------~~~~~~~~~d~~~~~~~~~~~~   61 (308)
T PRK11150          3 IVTGGA------GFIGSNI---VKALNDKGITDILVVDNLKDGTKF------------VNLVDLDIADYMDKEDFLAQIM   61 (308)
T ss_pred             EEecCC------cHHHHHH---HHHHHhCCCceEEEecCCCcchHH------------HhhhhhhhhhhhhHHHHHHHHh
Confidence            499999      9999999   5556667763 33 3543221110            0123467877777777766654


Q ss_pred             H--hCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCC
Q psy4251         108 K--KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS  185 (292)
Q Consensus       108 ~--~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~  185 (292)
                      +  .++++|+|||+||..... .  . +-+..+++|+.++..+++++..    . +  .++|++||...+..... ...+
T Consensus        62 ~~~~~~~~d~Vih~A~~~~~~-~--~-~~~~~~~~n~~~t~~ll~~~~~----~-~--~~~i~~SS~~vyg~~~~-~~~~  129 (308)
T PRK11150         62 AGDDFGDIEAIFHEGACSSTT-E--W-DGKYMMDNNYQYSKELLHYCLE----R-E--IPFLYASSAATYGGRTD-DFIE  129 (308)
T ss_pred             cccccCCccEEEECceecCCc-C--C-ChHHHHHHHHHHHHHHHHHHHH----c-C--CcEEEEcchHHhCcCCC-CCCc
Confidence            3  245799999999865322 1  1 2245789999998888888743    2 2  57999999865532211 0011


Q ss_pred             ccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         186 KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       186 ~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                             +.....+...|+.+|.+.+.+++.++++.   ++.+..+.|+.+-
T Consensus       130 -------E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vy  171 (308)
T PRK11150        130 -------EREYEKPLNVYGYSKFLFDEYVRQILPEA---NSQICGFRYFNVY  171 (308)
T ss_pred             -------cCCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCEEEEeeeeec
Confidence                   11122355689999999999988876553   5888899888777

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.22  E-value=2.7e-10  Score=100.39  Aligned_cols=167  Identities=10%  Similarity=-0.028  Sum_probs=106.0

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      |||||+      +.||..+   +..|.+.|. .|++  |... ..    .+.+.    ....+..|+++.+.++.+.+. 
T Consensus         2 lItGat------G~iG~~l---~~~L~~~g~~~v~~~~~~~~-~~----~~~~~----~~~~~~~d~~~~~~~~~~~~~-   62 (314)
T TIGR02197         2 IVTGGA------GFIGSNL---VKALNERGITDILVVDNLRD-GH----KFLNL----ADLVIADYIDKEDFLDRLEKG-   62 (314)
T ss_pred             EEeCCc------chhhHHH---HHHHHHcCCceEEEEecCCC-ch----hhhhh----hheeeeccCcchhHHHHHHhh-
Confidence            499999      9999999   555667775 4543  3221 11    11111    113467888887776665543 


Q ss_pred             HHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCc
Q psy4251         107 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK  186 (292)
Q Consensus       107 ~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~  186 (292)
                        .+.++|+|||+|+...    .+.++.+..+++|+.++..+++++...     +  .++|++||...+... . ..+..
T Consensus        63 --~~~~~D~vvh~A~~~~----~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~--~~~v~~SS~~vy~~~-~-~~~~e  127 (314)
T TIGR02197        63 --AFGKIEAIFHQGACSD----TTETDGEYMMENNYQYSKRLLDWCAEK-----G--IPFIYASSAATYGDG-E-AGFRE  127 (314)
T ss_pred             --ccCCCCEEEECccccC----ccccchHHHHHHHHHHHHHHHHHHHHh-----C--CcEEEEccHHhcCCC-C-CCccc
Confidence              3457999999999643    123456778999999999999886532     2  689999997544321 1 11111


Q ss_pred             cccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       187 ~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ++      ....+...|+.+|.+.+.+++....+.. .++.+..+.|+.+-
T Consensus       128 ~~------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~~~lR~~~vy  171 (314)
T TIGR02197       128 GR------ELERPLNVYGYSKFLFDQYVRRRVLPEA-LSAQVVGLRYFNVY  171 (314)
T ss_pred             cc------CcCCCCCHHHHHHHHHHHHHHHHhHhhc-cCCceEEEEEeecc
Confidence            11      0112456899999999999886433321 14678888887777

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.21  E-value=6.3e-10  Score=99.69  Aligned_cols=175  Identities=7%  Similarity=-0.100  Sum_probs=109.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCC-ChHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLC-RLKSVKK  101 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-~~~~v~~  101 (292)
                      ++++ ||||+      +=||..+   +.+|.+. |+.|++  |+.++..    ++   .+...+.++.+|+. +.+.+.+
T Consensus         2 ~~il-VtGat------GfiGs~l---~~~L~~~~~~~V~~~~r~~~~~~----~~---~~~~~~~~~~~Dl~~~~~~~~~   64 (347)
T PRK11908          2 KKVL-ILGVN------GFIGHHL---SKRILETTDWEVYGMDMQTDRLG----DL---VNHPRMHFFEGDITINKEWIEY   64 (347)
T ss_pred             cEEE-EECCC------cHHHHHH---HHHHHhCCCCeEEEEeCcHHHHH----Hh---ccCCCeEEEeCCCCCCHHHHHH
Confidence            3567 99999      8899999   5556554 567764  5443221    12   11346889999998 5555544


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      ++       .++|+|||+|+...+..  ..++-+..+++|+.++..+++++..    . +  .++|++||...+.... .
T Consensus        65 ~~-------~~~d~ViH~aa~~~~~~--~~~~p~~~~~~n~~~~~~ll~aa~~----~-~--~~~v~~SS~~vyg~~~-~  127 (347)
T PRK11908         65 HV-------KKCDVILPLVAIATPAT--YVKQPLRVFELDFEANLPIVRSAVK----Y-G--KHLVFPSTSEVYGMCP-D  127 (347)
T ss_pred             HH-------cCCCEEEECcccCChHH--hhcCcHHHHHHHHHHHHHHHHHHHh----c-C--CeEEEEecceeeccCC-C
Confidence            32       24899999999754322  1233457789999999988887652    2 3  6999999986543221 1


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..+..++...+.....++...|+.+|.+.+.+++.++.+.   |+.+..+.|+.+-
T Consensus       128 ~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilR~~~v~  180 (347)
T PRK11908        128 EEFDPEASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEE---GLNFTLFRPFNWI  180 (347)
T ss_pred             cCcCccccccccCcCCCccchHHHHHHHHHHHHHHHHHHc---CCCeEEEeeeeee
Confidence            1111111000000001134579999999999998887653   5778888887776

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.20  E-value=2.2e-10  Score=100.77  Aligned_cols=169  Identities=15%  Similarity=0.060  Sum_probs=113.3

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      ++ |||++      +=||..+   +.+|.+.|+.|.+  |...+.....         ..+.++.+|+++.+.+...++.
T Consensus         3 IL-VtG~t------GfiG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~   63 (314)
T COG0451           3 IL-VTGGA------GFIGSHL---VERLLAAGHDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDRDLVDELAKG   63 (314)
T ss_pred             EE-EEcCc------ccHHHHH---HHHHHhCCCeEEEEeCCCccccccc---------cccceeeecccchHHHHHHHhc
Confidence            45 99999      8899888   7777777888875  4433322211         2578889999998544444333


Q ss_pred             HHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCC
Q psy4251         106 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS  185 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~  185 (292)
                      .    .  |++||+|+.......... .....+.+|+.++..+++++..    ...  .++|+.||.+...........+
T Consensus        64 ~----~--d~vih~aa~~~~~~~~~~-~~~~~~~~nv~gt~~ll~aa~~----~~~--~~~v~~ss~~~~~~~~~~~~~~  130 (314)
T COG0451          64 V----P--DAVIHLAAQSSVPDSNAS-DPAEFLDVNVDGTLNLLEAARA----AGV--KRFVFASSVSVVYGDPPPLPID  130 (314)
T ss_pred             C----C--CEEEEccccCchhhhhhh-CHHHHHHHHHHHHHHHHHHHHH----cCC--CeEEEeCCCceECCCCCCCCcc
Confidence            2    2  999999998753332222 4566899999999999998875    233  7999966655444321111122


Q ss_pred             ccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         186 KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       186 ~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .+. .     ...+...|+.+|.+.+.+++..+.   ..|+.+..+.|+.+-
T Consensus       131 E~~-~-----~~~p~~~Yg~sK~~~E~~~~~~~~---~~~~~~~ilR~~~vy  173 (314)
T COG0451         131 EDL-G-----PPRPLNPYGVSKLAAEQLLRAYAR---LYGLPVVILRPFNVY  173 (314)
T ss_pred             ccc-C-----CCCCCCHHHHHHHHHHHHHHHHHH---HhCCCeEEEeeeeee
Confidence            221 1     111333799999999999999888   336899999999777

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.20  E-value=4.1e-10  Score=109.11  Aligned_cols=177  Identities=7%  Similarity=-0.086  Sum_probs=114.4

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH-
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS-   98 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~-   98 (292)
                      .++++++ ||||+      +-||..+   +.+|..+ |+.|++  |+......    +   .+..++.++.+|++|..+ 
T Consensus       313 ~~~~~VL-VTGat------GFIGs~L---v~~Ll~~~g~~V~~l~r~~~~~~~----~---~~~~~~~~~~gDl~d~~~~  375 (660)
T PRK08125        313 KRRTRVL-ILGVN------GFIGNHL---TERLLRDDNYEVYGLDIGSDAISR----F---LGHPRFHFVEGDISIHSEW  375 (660)
T ss_pred             hcCCEEE-EECCC------chHHHHH---HHHHHhCCCcEEEEEeCCchhhhh----h---cCCCceEEEeccccCcHHH
Confidence            4577888 99999      8899999   6666654 566664  54432211    1   112368889999998654 


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +++++       ..+|+|||+|+...+...  .++-+..+++|+.++..+++++...     +  .++|++||...+...
T Consensus       376 l~~~l-------~~~D~ViHlAa~~~~~~~--~~~~~~~~~~Nv~~t~~ll~a~~~~-----~--~~~V~~SS~~vyg~~  439 (660)
T PRK08125        376 IEYHI-------KKCDVVLPLVAIATPIEY--TRNPLRVFELDFEENLKIIRYCVKY-----N--KRIIFPSTSEVYGMC  439 (660)
T ss_pred             HHHHh-------cCCCEEEECccccCchhh--ccCHHHHHHhhHHHHHHHHHHHHhc-----C--CeEEEEcchhhcCCC
Confidence            33332       258999999998653221  2233567899999999988887632     2  589999997554321


Q ss_pred             CCCCCCCccccCcCCCCCC-hhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         179 ITKDTISKSVLSVENYSDF-WAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                       ....++.+.... ..... .+...|+.||.+.+.+++.+++++   |+++..+.|+.+-
T Consensus       440 -~~~~~~E~~~~~-~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~---g~~~~ilR~~~vy  494 (660)
T PRK08125        440 -TDKYFDEDTSNL-IVGPINKQRWIYSVSKQLLDRVIWAYGEKE---GLRFTLFRPFNWM  494 (660)
T ss_pred             -CCCCcCcccccc-ccCCCCCCccchHHHHHHHHHHHHHHHHhc---CCceEEEEEceee
Confidence             111111111100 00000 134579999999999999887664   5889999999887

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.18  E-value=5.5e-10  Score=97.22  Aligned_cols=150  Identities=17%  Similarity=0.135  Sum_probs=104.0

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  107 (292)
                      ++ ||||+      +.||..+   +.+|.+.|+.|++-+..                     .+|+.+.++++++++.. 
T Consensus         2 il-v~G~t------G~iG~~l---~~~l~~~g~~v~~~~r~---------------------~~d~~~~~~~~~~~~~~-   49 (287)
T TIGR01214         2 IL-ITGAN------GQLGREL---VQQLSPEGRVVVALTSS---------------------QLDLTDPEALERLLRAI-   49 (287)
T ss_pred             EE-EEcCC------CHHHHHH---HHHHHhcCCEEEEeCCc---------------------ccCCCCHHHHHHHHHhC-
Confidence            45 99999      9999999   55566778877652210                     47999999988887653 


Q ss_pred             HhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCcc
Q psy4251         108 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS  187 (292)
Q Consensus       108 ~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~  187 (292)
                          ++|+|||+||.....  ......+..+++|+.++..+++++..    . +  .++|++||...+.+. ....++.+
T Consensus        50 ----~~d~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~--~~~v~~Ss~~vy~~~-~~~~~~E~  115 (287)
T TIGR01214        50 ----RPDAVVNTAAYTDVD--GAESDPEKAFAVNALAPQNLARAAAR----H-G--ARLVHISTDYVFDGE-GKRPYRED  115 (287)
T ss_pred             ----CCCEEEECCcccccc--ccccCHHHHHHHHHHHHHHHHHHHHH----c-C--CeEEEEeeeeeecCC-CCCCCCCC
Confidence                589999999975321  12234567889999999999888643    2 3  589999997544221 11111111


Q ss_pred             ccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         188 VLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       188 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .       ..++...|+.+|...+.+++.+       +..+..+.|+.+-
T Consensus       116 ~-------~~~~~~~Y~~~K~~~E~~~~~~-------~~~~~ilR~~~v~  151 (287)
T TIGR01214       116 D-------ATNPLNVYGQSKLAGEQAIRAA-------GPNALIVRTSWLY  151 (287)
T ss_pred             C-------CCCCcchhhHHHHHHHHHHHHh-------CCCeEEEEeeecc
Confidence            1       1224668999999999888764       3568899999887

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>KOG1371|consensus

Probab=99.17  E-value=7.3e-10  Score=94.79  Aligned_cols=168  Identities=12%  Similarity=0.047  Sum_probs=116.9

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEc-C-HHHHHHHHHHHHhhCC-CCceEEEEccCCChHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQN-C-WDKANDAISKILTEKP-SAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r-~-~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~  101 (292)
                      +++++ ||||+      +=||..+   +++|...|..|++- | ..........+++..+ +..+.+++.|++|.+.+++
T Consensus         2 ~~~VL-VtGga------GyiGsht---~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~k   71 (343)
T KOG1371|consen    2 GKHVL-VTGGA------GYIGSHT---VLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEK   71 (343)
T ss_pred             CcEEE-EecCC------cceehHH---HHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHH
Confidence            56788 99999      7788888   89999999888752 2 1111222222322221 4689999999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      ++++.     ++|.|+|-|+...-..  +.+.-......|+.|+..+++....    .+.  ..+|+.||.+.+..+.. 
T Consensus        72 vF~~~-----~fd~V~Hfa~~~~vge--S~~~p~~Y~~nNi~gtlnlLe~~~~----~~~--~~~V~sssatvYG~p~~-  137 (343)
T KOG1371|consen   72 LFSEV-----KFDAVMHFAALAAVGE--SMENPLSYYHNNIAGTLNLLEVMKA----HNV--KALVFSSSATVYGLPTK-  137 (343)
T ss_pred             HHhhc-----CCceEEeehhhhccch--hhhCchhheehhhhhHHHHHHHHHH----cCC--ceEEEecceeeecCcce-
Confidence            98887     4999999999764222  2223367888999999998887543    334  79999999866543311 


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY  222 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~  222 (292)
                        +.+    +|+.....+...|+.+|.+++.....+.+.+.
T Consensus       138 --ip~----te~~~t~~p~~pyg~tK~~iE~i~~d~~~~~~  172 (343)
T KOG1371|consen  138 --VPI----TEEDPTDQPTNPYGKTKKAIEEIIHDYNKAYG  172 (343)
T ss_pred             --eec----cCcCCCCCCCCcchhhhHHHHHHHHhhhcccc
Confidence              111    11112224788999999999999998887765

>PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function

Probab=99.17  E-value=1.5e-09  Score=93.45  Aligned_cols=178  Identities=11%  Similarity=0.051  Sum_probs=133.2

Q ss_pred             EEEEcCC-CCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          28 AILCTGD-MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        28 ~vlItGa-~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      ||||-|. +      .-|++.+   +..|-++|++|++  .+.+..+...+    +. ...+..+..|..++.++...++
T Consensus         5 vVvI~Gs~~------~PltR~l---a~DLeRRGFIV~v~~~~~ed~~~ve~----e~-~~dI~~L~ld~~~~~~~~~~l~   70 (299)
T PF08643_consen    5 VVVIAGSPH------DPLTRSL---ALDLERRGFIVYVTVSSAEDEKYVES----ED-RPDIRPLWLDDSDPSSIHASLS   70 (299)
T ss_pred             EEEEECCCC------CccHHHH---HHHHhhCCeEEEEEeCCHHHHHHHHh----cc-CCCCCCcccCCCCCcchHHHHH
Confidence            4447785 6      9999999   9999999999986  44433332222    21 3457888889888888777777


Q ss_pred             HHHHhCC--------------CccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEE
Q psy4251         105 EYQKKFR--------------SLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVV  167 (292)
Q Consensus       105 ~~~~~~~--------------~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV  167 (292)
                      ++.+...              .+..||......   +|...++.+.|..+++.|++.++.+++.++|+|..+..++.+||
T Consensus        71 ~f~~~L~~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~ii  150 (299)
T PF08643_consen   71 RFASLLSRPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKII  150 (299)
T ss_pred             HHHHHhcCCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE
Confidence            7765543              356666655543   35568899999999999999999999999999987331116666


Q ss_pred             EEc-CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-c
Q psy4251         168 VVS-SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-T  238 (292)
Q Consensus       168 ~vs-S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~  238 (292)
                      .++ |..+....            +       ....-.....++..|+..|.+|+.+.+|.|..++-|.++ .
T Consensus       151 l~~Psi~ssl~~------------P-------fhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~i~  204 (299)
T PF08643_consen  151 LFNPSISSSLNP------------P-------FHSPESIVSSALSSFFTSLRRELRPHNIDVTQIKLGNLDIG  204 (299)
T ss_pred             EEeCchhhccCC------------C-------ccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeeeeccc
Confidence            665 55455443            2       456678888899999999999999999999999999999 5

One of the proteins P32792 from SWISSPROT has been localised to the mitochondria [].

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.17  E-value=3.6e-10  Score=99.20  Aligned_cols=159  Identities=12%  Similarity=-0.001  Sum_probs=105.5

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQK  108 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  108 (292)
                      |||||+      +-||..+   +..|...|..++. ++.                     ..+|+++.++++++++..  
T Consensus         1 lItGa~------GfiG~~l---~~~L~~~g~~v~~~~~~---------------------~~~Dl~~~~~l~~~~~~~--   48 (306)
T PLN02725          1 FVAGHR------GLVGSAI---VRKLEALGFTNLVLRTH---------------------KELDLTRQADVEAFFAKE--   48 (306)
T ss_pred             CcccCC------CcccHHH---HHHHHhCCCcEEEeecc---------------------ccCCCCCHHHHHHHHhcc--
Confidence            499999      9999999   5556667765543 211                     248999999888876663  


Q ss_pred             hCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccc
Q psy4251         109 KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSV  188 (292)
Q Consensus       109 ~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~  188 (292)
                         ++|+|||+|+....... ..+.-+..+++|+.++..+++.+...    +.  .++|++||...+.+. .....+.++
T Consensus        49 ---~~d~Vih~A~~~~~~~~-~~~~~~~~~~~n~~~~~~ll~~~~~~----~~--~~~i~~SS~~vyg~~-~~~~~~E~~  117 (306)
T PLN02725         49 ---KPTYVILAAAKVGGIHA-NMTYPADFIRENLQIQTNVIDAAYRH----GV--KKLLFLGSSCIYPKF-APQPIPETA  117 (306)
T ss_pred             ---CCCEEEEeeeeecccch-hhhCcHHHHHHHhHHHHHHHHHHHHc----CC--CeEEEeCceeecCCC-CCCCCCHHH
Confidence               58999999997532111 11223567889999988888887532    33  699999997544321 111111111


Q ss_pred             cCcCCCCCChh-hhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         189 LSVENYSDFWA-MTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       189 ~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      +..   ....+ ...|+.||.+.+.+++.+.++.   ++++..+.|+.+-
T Consensus       118 ~~~---~~~~p~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~R~~~vy  161 (306)
T PLN02725        118 LLT---GPPEPTNEWYAIAKIAGIKMCQAYRIQY---GWDAISGMPTNLY  161 (306)
T ss_pred             hcc---CCCCCCcchHHHHHHHHHHHHHHHHHHh---CCCEEEEEeccee
Confidence            100   01112 2359999999999888877665   5889999999887

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.16  E-value=7.9e-10  Score=99.92  Aligned_cols=178  Identities=11%  Similarity=-0.052  Sum_probs=113.6

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      -++++++ ||||+      +-||..+   +..|.+.|+.|++  |....      .+...  .....++.+|+++.+.+.
T Consensus        19 ~~~~~Il-VtGgt------GfIG~~l---~~~L~~~G~~V~~v~r~~~~------~~~~~--~~~~~~~~~Dl~d~~~~~   80 (370)
T PLN02695         19 SEKLRIC-ITGAG------GFIASHI---ARRLKAEGHYIIASDWKKNE------HMSED--MFCHEFHLVDLRVMENCL   80 (370)
T ss_pred             CCCCEEE-EECCc------cHHHHHH---HHHHHhCCCEEEEEEecccc------ccccc--cccceEEECCCCCHHHHH
Confidence            3677888 99999      9999999   6666677877765  33211      01111  113567889999987766


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      .+++       .+|+|||+|+....... ...+....+..|+.++.++++++..    .+.  .++|++||...+.....
T Consensus        81 ~~~~-------~~D~Vih~Aa~~~~~~~-~~~~~~~~~~~N~~~t~nll~aa~~----~~v--k~~V~~SS~~vYg~~~~  146 (370)
T PLN02695         81 KVTK-------GVDHVFNLAADMGGMGF-IQSNHSVIMYNNTMISFNMLEAARI----NGV--KRFFYASSACIYPEFKQ  146 (370)
T ss_pred             HHHh-------CCCEEEEcccccCCccc-cccCchhhHHHHHHHHHHHHHHHHH----hCC--CEEEEeCchhhcCCccc
Confidence            5542       47999999986532111 1122345577899999888887642    233  69999999765432211


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                       ..... .+..+......+...|+.+|.+.+.+++.+++.+   |+++..+.|+.+-
T Consensus       147 -~~~~~-~~~E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~---g~~~~ilR~~~vy  198 (370)
T PLN02695        147 -LETNV-SLKESDAWPAEPQDAYGLEKLATEELCKHYTKDF---GIECRIGRFHNIY  198 (370)
T ss_pred             -cCcCC-CcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEECCcc
Confidence             00000 0000000122356789999999999999887654   6899999999888

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.16  E-value=6.6e-10  Score=94.74  Aligned_cols=137  Identities=17%  Similarity=0.071  Sum_probs=100.8

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  107 (292)
                      ++ |||++      +-+|.++   +..+. .+..|+.-+.                     -.+|++|.+.+.+++++. 
T Consensus         3 iL-i~G~~------GqLG~~L---~~~l~-~~~~v~a~~~---------------------~~~Ditd~~~v~~~i~~~-   49 (281)
T COG1091           3 IL-ITGAN------GQLGTEL---RRALP-GEFEVIATDR---------------------AELDITDPDAVLEVIRET-   49 (281)
T ss_pred             EE-EEcCC------ChHHHHH---HHHhC-CCceEEeccC---------------------ccccccChHHHHHHHHhh-
Confidence            45 99999      9999999   55454 5456654211                     018999999999998887 


Q ss_pred             HhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCcc
Q psy4251         108 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS  187 (292)
Q Consensus       108 ~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~  187 (292)
                          ++|+|||+|++..  .+..+.+-+..+.+|..|+.++.++....     +  .++|++|+.-.+.+.... ....+
T Consensus        50 ----~PDvVIn~AAyt~--vD~aE~~~e~A~~vNa~~~~~lA~aa~~~-----g--a~lVhiSTDyVFDG~~~~-~Y~E~  115 (281)
T COG1091          50 ----RPDVVINAAAYTA--VDKAESEPELAFAVNATGAENLARAAAEV-----G--ARLVHISTDYVFDGEKGG-PYKET  115 (281)
T ss_pred             ----CCCEEEECccccc--cccccCCHHHHHHhHHHHHHHHHHHHHHh-----C--CeEEEeecceEecCCCCC-CCCCC
Confidence                6999999999874  23344556899999999999999987543     2  799999998665554211 12222


Q ss_pred             ccCcCCCCCChhhhHHHHhHHHHHHHHHHHH
Q psy4251         188 VLSVENYSDFWAMTAYNDTKLCNVLFGEKLA  218 (292)
Q Consensus       188 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la  218 (292)
                      +.       -++...||.||.+.+..+++..
T Consensus       116 D~-------~~P~nvYG~sKl~GE~~v~~~~  139 (281)
T COG1091         116 DT-------PNPLNVYGRSKLAGEEAVRAAG  139 (281)
T ss_pred             CC-------CCChhhhhHHHHHHHHHHHHhC
Confidence            22       2378899999999999888764

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.14  E-value=4.6e-10  Score=95.88  Aligned_cols=177  Identities=12%  Similarity=0.031  Sum_probs=92.5

Q ss_pred             EcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEE--EcCH--HH-HHHHHHHHHhhC--------CCCceEEEEccCCC
Q psy4251          31 CTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFY--QNCW--DK-ANDAISKILTEK--------PSAQCIAMELDLCR   95 (292)
Q Consensus        31 ItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~--~r~~--~~-~~~~~~~l~~~~--------~~~~~~~~~~Dls~   95 (292)
                      |||||      +=||..+   +.+|...+.  .|+  +|..  .. .+...+.+.+..        ...++.++.+|+++
T Consensus         1 lTGaT------GflG~~l---l~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~   71 (249)
T PF07993_consen    1 LTGAT------GFLGSHL---LEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQ   71 (249)
T ss_dssp             EE-TT------SHHHHHH---HHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTS
T ss_pred             CcCCC------cHHHHHH---HHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccc
Confidence            79999      7777777   666666654  555  4653  12 222222221110        04699999999998


Q ss_pred             hHH--HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          96 LKS--VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        96 ~~~--v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +.-  -.+-.+++.+   .+|+|||||+...-..     .++...++|+.|+..+++.+.    ....  .++++||| +
T Consensus        72 ~~lGL~~~~~~~L~~---~v~~IiH~Aa~v~~~~-----~~~~~~~~NV~gt~~ll~la~----~~~~--~~~~~iST-a  136 (249)
T PF07993_consen   72 PNLGLSDEDYQELAE---EVDVIIHCAASVNFNA-----PYSELRAVNVDGTRNLLRLAA----QGKR--KRFHYIST-A  136 (249)
T ss_dssp             GGGG--HHHHHHHHH---H--EEEE--SS-SBS------S--EEHHHHHHHHHHHHHHHT----SSS-----EEEEEE-G
T ss_pred             cccCCChHHhhcccc---ccceeeecchhhhhcc-----cchhhhhhHHHHHHHHHHHHH----hccC--cceEEecc-c
Confidence            641  1222333433   4899999999764211     345578899999999888765    2233  59999999 3


Q ss_pred             cccccCCCCCCC-----ccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         174 HRYSYITKDTIS-----KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       174 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ...+... ....     .+....  .........|..||...+.+.+..+++.   |+.+..+.||.|-
T Consensus       137 ~v~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~gY~~SK~~aE~~l~~a~~~~---g~p~~I~Rp~~i~  199 (249)
T PF07993_consen  137 YVAGSRP-GTIEEKVYPEEEDDL--DPPQGFPNGYEQSKWVAERLLREAAQRH---GLPVTIYRPGIIV  199 (249)
T ss_dssp             GGTTS-T-TT--SSS-HHH--EE--E--TTSEE-HHHHHHHHHHHHHHHHHHH------EEEEEE-EEE
T ss_pred             cccCCCC-Ccccccccccccccc--hhhccCCccHHHHHHHHHHHHHHHHhcC---CceEEEEecCccc
Confidence            2222211 1110     000000  0111234589999999999999888763   5889999999988

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.14  E-value=1.2e-09  Score=95.92  Aligned_cols=141  Identities=12%  Similarity=-0.025  Sum_probs=94.5

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      +=||..+   +..|.+.| .|++  |..                   ..+..|++|.+.+.++++
T Consensus         2 ~iL-VtG~~------GfiGs~l---~~~L~~~g-~V~~~~~~~-------------------~~~~~Dl~d~~~~~~~~~   51 (299)
T PRK09987          2 NIL-LFGKT------GQVGWEL---QRALAPLG-NLIALDVHS-------------------TDYCGDFSNPEGVAETVR   51 (299)
T ss_pred             eEE-EECCC------CHHHHHH---HHHhhccC-CEEEecccc-------------------ccccCCCCCHHHHHHHHH
Confidence            466 99999      8899998   55566666 3443  221                   124579999999888776


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      ..     ++|+|||+|+......  ..++-+..+.+|+.++..+++++...     +  .++|++||...+.+. ....+
T Consensus        52 ~~-----~~D~Vih~Aa~~~~~~--~~~~~~~~~~~N~~~~~~l~~aa~~~-----g--~~~v~~Ss~~Vy~~~-~~~p~  116 (299)
T PRK09987         52 KI-----RPDVIVNAAAHTAVDK--AESEPEFAQLLNATSVEAIAKAANEV-----G--AWVVHYSTDYVFPGT-GDIPW  116 (299)
T ss_pred             hc-----CCCEEEECCccCCcch--hhcCHHHHHHHHHHHHHHHHHHHHHc-----C--CeEEEEccceEECCC-CCCCc
Confidence            53     5899999999764321  22333567789999999998877532     2  689999997654322 11111


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHh
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLAT  219 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~  219 (292)
                      ..+       ....+...|+.||.+.+.+++.+..
T Consensus       117 ~E~-------~~~~P~~~Yg~sK~~~E~~~~~~~~  144 (299)
T PRK09987        117 QET-------DATAPLNVYGETKLAGEKALQEHCA  144 (299)
T ss_pred             CCC-------CCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            111       1223667899999999998876543

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.07  E-value=2.5e-09  Score=98.63  Aligned_cols=173  Identities=8%  Similarity=-0.011  Sum_probs=110.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH-HHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD-KANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++++++ ||||+      +-||..+   +.+|.++|..|++  |... ..+....    .....++.++..|+.+...  
T Consensus       118 ~~~kIL-VTGat------GfIGs~L---v~~Ll~~G~~V~~ld~~~~~~~~~~~~----~~~~~~~~~i~~D~~~~~l--  181 (442)
T PLN02206        118 KGLRVV-VTGGA------GFVGSHL---VDRLMARGDSVIVVDNFFTGRKENVMH----HFSNPNFELIRHDVVEPIL--  181 (442)
T ss_pred             CCCEEE-EECcc------cHHHHHH---HHHHHHCcCEEEEEeCCCccchhhhhh----hccCCceEEEECCccChhh--
Confidence            567888 99999      8888888   6667788888775  3211 1111111    1123467888999876521  


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                                ..+|+|||+|+...+..  ..++-+..+++|+.++..+++++...     +  .++|++||...+.....
T Consensus       182 ----------~~~D~ViHlAa~~~~~~--~~~~p~~~~~~Nv~gt~nLleaa~~~-----g--~r~V~~SS~~VYg~~~~  242 (442)
T PLN02206        182 ----------LEVDQIYHLACPASPVH--YKFNPVKTIKTNVVGTLNMLGLAKRV-----G--ARFLLTSTSEVYGDPLQ  242 (442)
T ss_pred             ----------cCCCEEEEeeeecchhh--hhcCHHHHHHHHHHHHHHHHHHHHHh-----C--CEEEEECChHHhCCCCC
Confidence                      24899999998764322  12234678999999999999887532     2  68999999865532211


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      . ....+.+..  .....+...|+.+|.+.+.+++.+.+..   ++.+..+.|+.+-
T Consensus       243 ~-p~~E~~~~~--~~P~~~~s~Y~~SK~~aE~~~~~y~~~~---g~~~~ilR~~~vy  293 (442)
T PLN02206        243 H-PQVETYWGN--VNPIGVRSCYDEGKRTAETLTMDYHRGA---NVEVRIARIFNTY  293 (442)
T ss_pred             C-CCCcccccc--CCCCCccchHHHHHHHHHHHHHHHHHHh---CCCeEEEEecccc
Confidence            0 011110000  0111235689999999999988876654   5778888777665

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.01  E-value=5.2e-09  Score=101.61  Aligned_cols=172  Identities=12%  Similarity=-0.002  Sum_probs=106.7

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHh--hcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH--H
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLV--QSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV--K  100 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~--~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v--~  100 (292)
                      +++ ||||+      +-||..+   +.+|.  ..|..|+  .|+...  ...+++.......++.++.+|+++++..  .
T Consensus         2 ~IL-VTGat------GfIG~~l---v~~Ll~~~~g~~V~~l~R~~~~--~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~   69 (657)
T PRK07201          2 RYF-VTGGT------GFIGRRL---VSRLLDRRREATVHVLVRRQSL--SRLEALAAYWGADRVVPLVGDLTEPGLGLSE   69 (657)
T ss_pred             eEE-EeCCc------cHHHHHH---HHHHHhcCCCCEEEEEECcchH--HHHHHHHHhcCCCcEEEEecccCCccCCcCH
Confidence            466 99999      9999999   55555  4666665  464322  1122222222224789999999985321  1


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ...+++    ..+|+|||+||.....     ...+...++|+.++..+++++.    +.+.  .++|++||.........
T Consensus        70 ~~~~~l----~~~D~Vih~Aa~~~~~-----~~~~~~~~~nv~gt~~ll~~a~----~~~~--~~~v~~SS~~v~g~~~~  134 (657)
T PRK07201         70 ADIAEL----GDIDHVVHLAAIYDLT-----ADEEAQRAANVDGTRNVVELAE----RLQA--ATFHHVSSIAVAGDYEG  134 (657)
T ss_pred             HHHHHh----cCCCEEEECceeecCC-----CCHHHHHHHHhHHHHHHHHHHH----hcCC--CeEEEEeccccccCccC
Confidence            122222    4699999999975321     2235677899999888877754    3334  79999999765432210


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                        ..+.+....    .......|+.+|...+.+.+.      ..|+.+..+.|+.|-
T Consensus       135 --~~~e~~~~~----~~~~~~~Y~~sK~~~E~~~~~------~~g~~~~ilRp~~v~  179 (657)
T PRK07201        135 --VFREDDFDE----GQGLPTPYHRTKFEAEKLVRE------ECGLPWRVYRPAVVV  179 (657)
T ss_pred             --ccccccchh----hcCCCCchHHHHHHHHHHHHH------cCCCcEEEEcCCeee
Confidence              111111100    011235699999999988753      237899999999887

>PLN02996 fatty acyl-CoA reductase

Probab=99.00  E-value=6.2e-09  Score=97.29  Aligned_cols=191  Identities=13%  Similarity=0.038  Sum_probs=111.0

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCH------HHHH-HH-----HHHHHhhCC------
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCW------DKAN-DA-----ISKILTEKP------   82 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~------~~~~-~~-----~~~l~~~~~------   82 (292)
                      ++||+++ |||||      +=||..+++.+++....-..|  ++|..      ++++ +.     .+.+++..+      
T Consensus         9 ~~~k~Vl-vTGaT------GFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~   81 (491)
T PLN02996          9 LENKTIL-VTGAT------GFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSL   81 (491)
T ss_pred             hCCCeEE-EeCCC------cHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhh
Confidence            6789999 99999      889999844433321121223  34542      1221 11     111122211      


Q ss_pred             -CCceEEEEccCCChH----HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHH
Q psy4251          83 -SAQCIAMELDLCRLK----SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALI  157 (292)
Q Consensus        83 -~~~~~~~~~Dls~~~----~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~  157 (292)
                       ..++.++.+|++++.    + ....+++.+   .+|+|||+|+....     .+..+..+++|+.|+..+++++...  
T Consensus        82 ~~~kv~~i~GDl~~~~LGLs~-~~~~~~l~~---~vD~ViH~AA~v~~-----~~~~~~~~~~Nv~gt~~ll~~a~~~--  150 (491)
T PLN02996         82 ISEKVTPVPGDISYDDLGVKD-SNLREEMWK---EIDIVVNLAATTNF-----DERYDVALGINTLGALNVLNFAKKC--  150 (491)
T ss_pred             hhcCEEEEecccCCcCCCCCh-HHHHHHHHh---CCCEEEECccccCC-----cCCHHHHHHHHHHHHHHHHHHHHhc--
Confidence             157999999998432    1 112222222   48999999997642     1346788999999999998877532  


Q ss_pred             hcCCCCcEEEEEcCcccccccCCC--CC-CC------------cc-----------c-----cCc------------CCC
Q psy4251         158 KGAKLFARVVVVSSESHRYSYITK--DT-IS------------KS-----------V-----LSV------------ENY  194 (292)
Q Consensus       158 ~~~~~~~~iV~vsS~~~~~~~~~~--~~-~~------------~~-----------~-----~~~------------~~~  194 (292)
                       ...  .++|++||..........  +. +.            .+           +     ...            +..
T Consensus       151 -~~~--k~~V~vST~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (491)
T PLN02996        151 -VKV--KMLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERA  227 (491)
T ss_pred             -CCC--CeEEEEeeeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHH
Confidence             122  689999997655332110  00 00            00           0     000            000


Q ss_pred             CCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         195 SDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       195 ~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      ........|+.||++.+.+++..+.     ++.+..+.|+.|- +.
T Consensus       228 ~~~~~pn~Y~~TK~~aE~lv~~~~~-----~lpv~i~RP~~V~G~~  268 (491)
T PLN02996        228 KLHGWPNTYVFTKAMGEMLLGNFKE-----NLPLVIIRPTMITSTY  268 (491)
T ss_pred             HhCCCCCchHhhHHHHHHHHHHhcC-----CCCEEEECCCEeccCC
Confidence            0011224699999999999976532     6899999999997 54

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.00  E-value=1.1e-08  Score=94.19  Aligned_cols=173  Identities=8%  Similarity=-0.022  Sum_probs=109.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      .++++ ||||+      +=||..+   +.+|.+.|+.|++  |......+....+   ....++.++..|+.+..     
T Consensus       120 ~mkIL-VTGat------GFIGs~L---v~~Ll~~G~~V~~ldr~~~~~~~~~~~~---~~~~~~~~~~~Di~~~~-----  181 (436)
T PLN02166        120 RLRIV-VTGGA------GFVGSHL---VDKLIGRGDEVIVIDNFFTGRKENLVHL---FGNPRFELIRHDVVEPI-----  181 (436)
T ss_pred             CCEEE-EECCc------cHHHHHH---HHHHHHCCCEEEEEeCCCCccHhHhhhh---ccCCceEEEECcccccc-----
Confidence            45677 99999      8888888   7777788888775  3211111111111   11236778888986542     


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                         +    ..+|+|||+|+...+...  ..+-+..+++|+.++..+++++...     +  .++|++||...+..... .
T Consensus       182 ---~----~~~D~ViHlAa~~~~~~~--~~~p~~~~~~Nv~gT~nLleaa~~~-----g--~r~V~~SS~~VYg~~~~-~  244 (436)
T PLN02166        182 ---L----LEVDQIYHLACPASPVHY--KYNPVKTIKTNVMGTLNMLGLAKRV-----G--ARFLLTSTSEVYGDPLE-H  244 (436)
T ss_pred             ---c----cCCCEEEECceeccchhh--ccCHHHHHHHHHHHHHHHHHHHHHh-----C--CEEEEECcHHHhCCCCC-C
Confidence               1    258999999987543221  1234678999999999998887532     2  68999999765532211 0


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..+.+.+..  .....+...|+.+|.+.+.+++.+++..   ++.+..+.|+.+-
T Consensus       245 p~~E~~~~~--~~p~~p~s~Yg~SK~~aE~~~~~y~~~~---~l~~~ilR~~~vY  294 (436)
T PLN02166        245 PQKETYWGN--VNPIGERSCYDEGKRTAETLAMDYHRGA---GVEVRIARIFNTY  294 (436)
T ss_pred             CCCcccccc--CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCCeEEEEEcccc
Confidence            011111000  0112235679999999999999887653   5778888887666

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.00  E-value=1.9e-09  Score=93.91  Aligned_cols=151  Identities=15%  Similarity=0.089  Sum_probs=95.9

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      +++ |||++      +=||.++   +..+...|+.++.-+..                     .+|++|.+++.+++++.
T Consensus         2 riL-I~Gas------G~lG~~l---~~~l~~~~~~v~~~~r~---------------------~~dl~d~~~~~~~~~~~   50 (286)
T PF04321_consen    2 RIL-ITGAS------GFLGSAL---ARALKERGYEVIATSRS---------------------DLDLTDPEAVAKLLEAF   50 (286)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHTTTSEEEEEESTT---------------------CS-TTSHHHHHHHHHHH
T ss_pred             EEE-EECCC------CHHHHHH---HHHHhhCCCEEEEeCch---------------------hcCCCCHHHHHHHHHHh
Confidence            466 99999      9999999   77777788777752211                     78999999999998887


Q ss_pred             HHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCc
Q psy4251         107 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK  186 (292)
Q Consensus       107 ~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~  186 (292)
                           ++|+|||+||+..+  +...++-+..+.+|+.++..+.+.+..     .+  .++|++||...+.+..... ...
T Consensus        51 -----~pd~Vin~aa~~~~--~~ce~~p~~a~~iN~~~~~~la~~~~~-----~~--~~li~~STd~VFdG~~~~~-y~E  115 (286)
T PF04321_consen   51 -----KPDVVINCAAYTNV--DACEKNPEEAYAINVDATKNLAEACKE-----RG--ARLIHISTDYVFDGDKGGP-YTE  115 (286)
T ss_dssp             -------SEEEE------H--HHHHHSHHHHHHHHTHHHHHHHHHHHH-----CT---EEEEEEEGGGS-SSTSSS-B-T
T ss_pred             -----CCCeEeccceeecH--HhhhhChhhhHHHhhHHHHHHHHHHHH-----cC--CcEEEeeccEEEcCCcccc-ccc
Confidence                 58999999998632  112334577899999999999988753     23  7999999986665431111 122


Q ss_pred             cccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       187 ~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ++       ..++.+.||.+|...+...+...   +    ....+.+|++-
T Consensus       116 ~d-------~~~P~~~YG~~K~~~E~~v~~~~---~----~~~IlR~~~~~  152 (286)
T PF04321_consen  116 DD-------PPNPLNVYGRSKLEGEQAVRAAC---P----NALILRTSWVY  152 (286)
T ss_dssp             TS-----------SSHHHHHHHHHHHHHHHH----S----SEEEEEE-SEE
T ss_pred             CC-------CCCCCCHHHHHHHHHHHHHHHhc---C----CEEEEecceec
Confidence            22       22367899999999998777622   2    24455555555

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.95  E-value=3.2e-08  Score=86.76  Aligned_cols=186  Identities=12%  Similarity=0.021  Sum_probs=110.5

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEEE--c--CH----HHHHHHHHHHH--hhCCCCceEEEEccCC
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFYQ--N--CW----DKANDAISKIL--TEKPSAQCIAMELDLC   94 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~~--r--~~----~~~~~~~~~l~--~~~~~~~~~~~~~Dls   94 (292)
                      ++++ +||||         |+-.+..+.+|..+- ..|++  |  |.    +++++......  ++....++..+..|++
T Consensus         1 ~~vl-LTGAT---------GFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~   70 (382)
T COG3320           1 RNVL-LTGAT---------GFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLA   70 (382)
T ss_pred             CeEE-EecCc---------hHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccc
Confidence            3567 99999         555544477776653 34543  3  32    22333322110  1222579999999999


Q ss_pred             ChHH--HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcE-EEEEcC
Q psy4251          95 RLKS--VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFAR-VVVVSS  171 (292)
Q Consensus        95 ~~~~--v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~-iV~vsS  171 (292)
                      .+.-  -+.-.+++.   ..+|.+||||+..+-     .....+....|++|+..+++....     .+  ++ +.+|||
T Consensus        71 e~~lGL~~~~~~~La---~~vD~I~H~gA~Vn~-----v~pYs~L~~~NVlGT~evlrLa~~-----gk--~Kp~~yVSs  135 (382)
T COG3320          71 EPDLGLSERTWQELA---ENVDLIIHNAALVNH-----VFPYSELRGANVLGTAEVLRLAAT-----GK--PKPLHYVSS  135 (382)
T ss_pred             cccCCCCHHHHHHHh---hhcceEEecchhhcc-----cCcHHHhcCcchHhHHHHHHHHhc-----CC--CceeEEEee
Confidence            4321  122223332   358999999997642     123466778899999998887642     22  44 889999


Q ss_pred             cccccccCCC-CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         172 ESHRYSYITK-DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       172 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ++........ .+..++...+.....-.....|+.||.+.+.+++.....    |+++..+.||+|- +-.
T Consensus       136 isv~~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r----GLpv~I~Rpg~I~gds~  202 (382)
T COG3320         136 ISVGETEYYSNFTVDFDEISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR----GLPVTIFRPGYITGDSR  202 (382)
T ss_pred             eeeccccccCCCccccccccccccccCccCCCcchhHHHHHHHHHHHhhc----CCCeEEEecCeeeccCc
Confidence            8654332211 111122111100111224578999999999988876644    7999999999998 444

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.91  E-value=3.1e-08  Score=87.64  Aligned_cols=145  Identities=10%  Similarity=-0.053  Sum_probs=97.4

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ |||||      +-||..+   +.+|.++|+.|.  +|+.++..    .+..    ..+.++.+|++|++++.++++
T Consensus         2 kIl-VtGat------G~iG~~l---v~~Ll~~g~~V~~l~R~~~~~~----~l~~----~~v~~v~~Dl~d~~~l~~al~   63 (317)
T CHL00194          2 SLL-VIGAT------GTLGRQI---VRQALDEGYQVRCLVRNLRKAS----FLKE----WGAELVYGDLSLPETLPPSFK   63 (317)
T ss_pred             EEE-EECCC------cHHHHHH---HHHHHHCCCeEEEEEcChHHhh----hHhh----cCCEEEECCCCCHHHHHHHHC
Confidence            466 99999      9999999   556667787765  47765432    1221    257889999999988766543


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                             .+|+|||+++...       .+.....++|+.++.++++++..    .+.  .|+|++||..+.. .      
T Consensus        64 -------g~d~Vi~~~~~~~-------~~~~~~~~~~~~~~~~l~~aa~~----~gv--kr~I~~Ss~~~~~-~------  116 (317)
T CHL00194         64 -------GVTAIIDASTSRP-------SDLYNAKQIDWDGKLALIEAAKA----AKI--KRFIFFSILNAEQ-Y------  116 (317)
T ss_pred             -------CCCEEEECCCCCC-------CCccchhhhhHHHHHHHHHHHHH----cCC--CEEEEeccccccc-c------
Confidence                   4799999876421       12234567888888877776643    333  6999999853321 1      


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                                    +...|..+|...+.+.+       ..|+....+.|+.+-
T Consensus       117 --------------~~~~~~~~K~~~e~~l~-------~~~l~~tilRp~~~~  148 (317)
T CHL00194        117 --------------PYIPLMKLKSDIEQKLK-------KSGIPYTIFRLAGFF  148 (317)
T ss_pred             --------------CCChHHHHHHHHHHHHH-------HcCCCeEEEeecHHh
Confidence                          22346778877665543       236888889998665

>PLN02778 3,5-epimerase/4-reductase

Probab=98.86  E-value=6.6e-08  Score=84.83  Aligned_cols=142  Identities=11%  Similarity=-0.101  Sum_probs=88.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      ++++ ||||+      +=||..+   +..|.++|+.|+.                        ...|+.+.+.+...++.
T Consensus        10 ~kiL-VtG~t------GfiG~~l---~~~L~~~g~~V~~------------------------~~~~~~~~~~v~~~l~~   55 (298)
T PLN02778         10 LKFL-IYGKT------GWIGGLL---GKLCQEQGIDFHY------------------------GSGRLENRASLEADIDA   55 (298)
T ss_pred             CeEE-EECCC------CHHHHHH---HHHHHhCCCEEEE------------------------ecCccCCHHHHHHHHHh
Confidence            5677 99999      8899999   6667677776653                        12455666665555443


Q ss_pred             HHHhCCCccEEEEcccccCCCC-CCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC--CC-
Q psy4251         106 YQKKFRSLNILVLNAGVFGLGF-SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI--TK-  181 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~~~~-~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~--~~-  181 (292)
                      .     ++|+|||+||...... +...++-...+++|+.++..+++++...    +   .+.+++||...+....  +. 
T Consensus        56 ~-----~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~----g---v~~v~~sS~~vy~~~~~~p~~  123 (298)
T PLN02778         56 V-----KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER----G---LVLTNYATGCIFEYDDAHPLG  123 (298)
T ss_pred             c-----CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh----C---CCEEEEecceEeCCCCCCCcc
Confidence            2     5899999999865321 1223345678999999999999987542    2   3455565543221110  00 


Q ss_pred             -C-CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHh
Q psy4251         182 -D-TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLAT  219 (292)
Q Consensus       182 -~-~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~  219 (292)
                       . .+..++.      ..++...|+.||.+.+.+++.++.
T Consensus       124 ~~~~~~Ee~~------p~~~~s~Yg~sK~~~E~~~~~y~~  157 (298)
T PLN02778        124 SGIGFKEEDT------PNFTGSFYSKTKAMVEELLKNYEN  157 (298)
T ss_pred             cCCCCCcCCC------CCCCCCchHHHHHHHHHHHHHhhc
Confidence             0 0111111      111346799999999999987653

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.83  E-value=1.4e-07  Score=76.40  Aligned_cols=146  Identities=16%  Similarity=0.034  Sum_probs=99.2

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  107 (292)
                      +|+|||      +.+|+.+   +.+|.++|+.|.  +|+.++.++          ..++..+++|+.|++++.+.++   
T Consensus         2 ~V~Gat------G~vG~~l---~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~---   59 (183)
T PF13460_consen    2 LVFGAT------GFVGRAL---AKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALK---   59 (183)
T ss_dssp             EEETTT------SHHHHHH---HHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHT---
T ss_pred             EEECCC------ChHHHHH---HHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhh---
Confidence            499999      9999999   666777777765  588776655          3489999999999977776644   


Q ss_pred             HhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCcc
Q psy4251         108 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS  187 (292)
Q Consensus       108 ~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~  187 (292)
                          ..|++|+++|....       +            ...++.++..+++.+.  .++|++|+.........   ...+
T Consensus        60 ----~~d~vi~~~~~~~~-------~------------~~~~~~~~~a~~~~~~--~~~v~~s~~~~~~~~~~---~~~~  111 (183)
T PF13460_consen   60 ----GADAVIHAAGPPPK-------D------------VDAAKNIIEAAKKAGV--KRVVYLSSAGVYRDPPG---LFSD  111 (183)
T ss_dssp             ----TSSEEEECCHSTTT-------H------------HHHHHHHHHHHHHTTS--SEEEEEEETTGTTTCTS---EEEG
T ss_pred             ----hcchhhhhhhhhcc-------c------------cccccccccccccccc--ccceeeeccccCCCCCc---cccc
Confidence                58999999975422       0            4455666666766665  79999999765543210   0000


Q ss_pred             ccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         188 VLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       188 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      ...+       ....|...|...+.+.+       ..+++...+.||++. +.
T Consensus       112 ~~~~-------~~~~~~~~~~~~e~~~~-------~~~~~~~ivrp~~~~~~~  150 (183)
T PF13460_consen  112 EDKP-------IFPEYARDKREAEEALR-------ESGLNWTIVRPGWIYGNP  150 (183)
T ss_dssp             GTCG-------GGHHHHHHHHHHHHHHH-------HSTSEEEEEEESEEEBTT
T ss_pred             cccc-------chhhhHHHHHHHHHHHH-------hcCCCEEEEECcEeEeCC
Confidence            1111       23566666665544332       237999999999988 54

...

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=98.82  E-value=1.4e-07  Score=91.92  Aligned_cols=153  Identities=9%  Similarity=-0.080  Sum_probs=99.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .++++ ||||+      +=||..+   +..|...|+.|.                        +...|++|.+.+.++++
T Consensus       380 ~mkiL-VtGa~------G~iG~~l---~~~L~~~g~~v~------------------------~~~~~l~d~~~v~~~i~  425 (668)
T PLN02260        380 SLKFL-IYGRT------GWIGGLL---GKLCEKQGIAYE------------------------YGKGRLEDRSSLLADIR  425 (668)
T ss_pred             CceEE-EECCC------chHHHHH---HHHHHhCCCeEE------------------------eeccccccHHHHHHHHH
Confidence            34677 99999      9999999   555656676552                        12257888888877766


Q ss_pred             HHHHhCCCccEEEEcccccCCC-CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC--C-
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI--T-  180 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~-~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~--~-  180 (292)
                      +.     ++|+|||+|+..... .+...++-+..+++|+.++..+++++...    +   .++|++||...+....  + 
T Consensus       426 ~~-----~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~----g---~~~v~~Ss~~v~~~~~~~~~  493 (668)
T PLN02260        426 NV-----KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN----G---LLMMNFATGCIFEYDAKHPE  493 (668)
T ss_pred             hh-----CCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc----C---CeEEEEcccceecCCccccc
Confidence            54     589999999986432 22334455788999999999999988642    2   4667776643322110  0 


Q ss_pred             C-C-CCCcc-ccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecC
Q psy4251         181 K-D-TISKS-VLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHC  233 (292)
Q Consensus       181 ~-~-~~~~~-~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~P  233 (292)
                      . . .+..+ ...+       +...|+.||.+.+.+++.+.+.   ..+++..+..
T Consensus       494 ~~~~p~~E~~~~~~-------~~~~Yg~sK~~~E~~~~~~~~~---~~~r~~~~~~  539 (668)
T PLN02260        494 GSGIGFKEEDKPNF-------TGSFYSKTKAMVEELLREYDNV---CTLRVRMPIS  539 (668)
T ss_pred             ccCCCCCcCCCCCC-------CCChhhHHHHHHHHHHHhhhhh---eEEEEEEecc
Confidence            0 0 01111 1111       3468999999999999876432   2467776663

>KOG0747|consensus

Probab=98.71  E-value=1.1e-07  Score=79.93  Aligned_cols=133  Identities=13%  Similarity=-0.002  Sum_probs=95.4

Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCC
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL  162 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~  162 (292)
                      ..+..+++.|+.+...+..++..     .+||.|||.|+......  +--+--...+.|++++..|.+..+...   +- 
T Consensus        56 ~p~ykfv~~di~~~~~~~~~~~~-----~~id~vihfaa~t~vd~--s~~~~~~~~~nnil~t~~Lle~~~~sg---~i-  124 (331)
T KOG0747|consen   56 SPNYKFVEGDIADADLVLYLFET-----EEIDTVIHFAAQTHVDR--SFGDSFEFTKNNILSTHVLLEAVRVSG---NI-  124 (331)
T ss_pred             CCCceEeeccccchHHHHhhhcc-----CchhhhhhhHhhhhhhh--hcCchHHHhcCCchhhhhHHHHHHhcc---Ce-
Confidence            56899999999998887776443     48999999999764211  112224567889999999998876553   22 


Q ss_pred             CcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         163 FARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       163 ~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                       .++|.||+...+....       ++...++....++.+.|+++|+|.+++.+++.+.+   |+.+..+.-+.|-
T Consensus       125 -~~fvhvSTdeVYGds~-------~~~~~~E~s~~nPtnpyAasKaAaE~~v~Sy~~sy---~lpvv~~R~nnVY  188 (331)
T KOG0747|consen  125 -RRFVHVSTDEVYGDSD-------EDAVVGEASLLNPTNPYAASKAAAEMLVRSYGRSY---GLPVVTTRMNNVY  188 (331)
T ss_pred             -eEEEEecccceecCcc-------ccccccccccCCCCCchHHHHHHHHHHHHHHhhcc---CCcEEEEeccCcc
Confidence             6999999987664431       11111123344577889999999999999999887   4778777777666

>PLN02503 fatty acyl-CoA reductase 2

Probab=98.66  E-value=6.8e-07  Score=84.90  Aligned_cols=130  Identities=11%  Similarity=0.122  Sum_probs=81.4

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC---cEE--EEcCH--H-HHHHHHH---------HHHhhCC---
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS---KLF--YQNCW--D-KANDAIS---------KILTEKP---   82 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g---~~v--~~r~~--~-~~~~~~~---------~l~~~~~---   82 (292)
                      ++||+++ |||||      +=||+.+   +.+|+..+   ..|  ++|..  + ..+...+         .+++..+   
T Consensus       117 ~~~k~Vl-VTGaT------GFLGk~L---lekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~  186 (605)
T PLN02503        117 LRGKNFL-ITGAT------GFLAKVL---IEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSY  186 (605)
T ss_pred             hcCCEEE-EcCCc------hHHHHHH---HHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccc
Confidence            5789999 99999      8888888   55555432   133  34532  1 1122211         2233322   


Q ss_pred             ----CCceEEEEccCCChHH-H-HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHH
Q psy4251          83 ----SAQCIAMELDLCRLKS-V-KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL  156 (292)
Q Consensus        83 ----~~~~~~~~~Dls~~~~-v-~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l  156 (292)
                          ..++..+.+|++++.- + .+..+.+.+   .+|+|||+|+....     .+..+..+++|+.|+..+++.+... 
T Consensus       187 ~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~---~vDiVIH~AA~v~f-----~~~~~~a~~vNV~GT~nLLelA~~~-  257 (605)
T PLN02503        187 QSFMLSKLVPVVGNVCESNLGLEPDLADEIAK---EVDVIINSAANTTF-----DERYDVAIDINTRGPCHLMSFAKKC-  257 (605)
T ss_pred             cccccccEEEEEeeCCCcccCCCHHHHHHHHh---cCCEEEECcccccc-----ccCHHHHHHHHHHHHHHHHHHHHHc-
Confidence                2479999999998730 0 112222322   48999999997631     2457889999999999999876532 


Q ss_pred             HhcCCCCcEEEEEcCcccc
Q psy4251         157 IKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       157 ~~~~~~~~~iV~vsS~~~~  175 (292)
                        ...  .++|++||....
T Consensus       258 --~~l--k~fV~vSTayVy  272 (605)
T PLN02503        258 --KKL--KLFLQVSTAYVN  272 (605)
T ss_pred             --CCC--CeEEEccCceee
Confidence              112  578998886544

>KOG1430|consensus

Probab=98.66  E-value=4.1e-07  Score=80.49  Aligned_cols=177  Identities=10%  Similarity=-0.005  Sum_probs=111.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEEEcCHHHH-HHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFYQNCWDKA-NDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~~r~~~~~-~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++.+++ ||||+      +=+|..+   +..|.+.+  ..|.+-|.... .....+.... ...++.++++|+.+..++.
T Consensus         3 ~~~~vl-VtGG~------GflG~hl---v~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~   71 (361)
T KOG1430|consen    3 KKLSVL-VTGGS------GFLGQHL---VQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSIS   71 (361)
T ss_pred             cCCEEE-EECCc------cHHHHHH---HHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhh
Confidence            456788 99999      5556655   66666666  44443222111 1111111111 1568999999999988877


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +.+       ... .+||+|+...  ...-..+-+..+++|+.|+.++++.+...    +.  .++|++||.....+..+
T Consensus        72 ~a~-------~~~-~Vvh~aa~~~--~~~~~~~~~~~~~vNV~gT~nvi~~c~~~----~v--~~lIYtSs~~Vvf~g~~  135 (361)
T KOG1430|consen   72 NAF-------QGA-VVVHCAASPV--PDFVENDRDLAMRVNVNGTLNVIEACKEL----GV--KRLIYTSSAYVVFGGEP  135 (361)
T ss_pred             hhc-------cCc-eEEEeccccC--ccccccchhhheeecchhHHHHHHHHHHh----CC--CEEEEecCceEEeCCee
Confidence            663       345 6666665432  22223356788999999988888887644    33  79999999877766533


Q ss_pred             CCCCCccccCcCCCCCCh--hhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         181 KDTISKSVLSVENYSDFW--AMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~--~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                             -++.++..+++  ....|+.||+-.+.+.+..+.   ..+....++.|-.|-
T Consensus       136 -------~~n~~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an~---~~~l~T~aLR~~~IY  184 (361)
T KOG1430|consen  136 -------IINGDESLPYPLKHIDPYGESKALAEKLVLEANG---SDDLYTCALRPPGIY  184 (361)
T ss_pred             -------cccCCCCCCCccccccccchHHHHHHHHHHHhcC---CCCeeEEEEcccccc
Confidence                   11122222222  346899999999998887664   335777788877776

>PRK05865 hypothetical protein; Provisional

Probab=98.66  E-value=3.3e-07  Score=89.92  Aligned_cols=101  Identities=14%  Similarity=0.055  Sum_probs=73.7

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      +.||..+   +.+|.++|+.|++  |+....      +     ...+.++++|++|.+++.++++
T Consensus         2 kIL-VTGAT------GfIGs~L---a~~Ll~~G~~Vv~l~R~~~~~------~-----~~~v~~v~gDL~D~~~l~~al~   60 (854)
T PRK05865          2 RIA-VTGAS------GVLGRGL---TARLLSQGHEVVGIARHRPDS------W-----PSSADFIAADIRDATAVESAMT   60 (854)
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHHCcCEEEEEECCchhh------c-----ccCceEEEeeCCCHHHHHHHHh
Confidence            466 99999      9999999   6667778877764  543210      1     1257789999999998877654


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                             .+|+|||+|+...+           .+++|+.++.++++++    .+.+.  ++||++||.
T Consensus        61 -------~vD~VVHlAa~~~~-----------~~~vNv~GT~nLLeAa----~~~gv--kr~V~iSS~  104 (854)
T PRK05865         61 -------GADVVAHCAWVRGR-----------NDHINIDGTANVLKAM----AETGT--GRIVFTSSG  104 (854)
T ss_pred             -------CCCEEEECCCcccc-----------hHHHHHHHHHHHHHHH----HHcCC--CeEEEECCc
Confidence                   38999999986421           4678999988776654    34444  799999884

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=98.66  E-value=5.8e-07  Score=94.47  Aligned_cols=183  Identities=12%  Similarity=-0.027  Sum_probs=108.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC----cEEEE--cCHHH---HHHHHHHHHhhC-----CCCceEEEE
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLFYQ--NCWDK---ANDAISKILTEK-----PSAQCIAME   90 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v~~--r~~~~---~~~~~~~l~~~~-----~~~~~~~~~   90 (292)
                      .++++ |||++      +-||..+   +.+|...+    ..|++  |+...   .+...+.+....     ...++.++.
T Consensus       971 ~~~Vl-vTGat------GflG~~l---~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~ 1040 (1389)
T TIGR03443       971 PITVF-LTGAT------GFLGSFI---LRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVL 1040 (1389)
T ss_pred             CceEE-EeCCc------cccHHHH---HHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEe
Confidence            46777 99999      9999999   55555544    56654  65222   222222111100     013789999


Q ss_pred             ccCCChHH--HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q psy4251          91 LDLCRLKS--VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVV  168 (292)
Q Consensus        91 ~Dls~~~~--v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~  168 (292)
                      +|++++.-  -....+++.   ..+|++||||+....     ...++.....|+.|+..+++.+..    .+.  .++++
T Consensus      1041 gDl~~~~lgl~~~~~~~l~---~~~d~iiH~Aa~~~~-----~~~~~~~~~~nv~gt~~ll~~a~~----~~~--~~~v~ 1106 (1389)
T TIGR03443      1041 GDLSKEKFGLSDEKWSDLT---NEVDVIIHNGALVHW-----VYPYSKLRDANVIGTINVLNLCAE----GKA--KQFSF 1106 (1389)
T ss_pred             ccCCCccCCcCHHHHHHHH---hcCCEEEECCcEecC-----ccCHHHHHHhHHHHHHHHHHHHHh----CCC--ceEEE
Confidence            99986521  012223332   358999999997641     122344556799999888887642    233  68999


Q ss_pred             EcCcccccccCC-----------CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         169 VSSESHRYSYIT-----------KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       169 vsS~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      +||.+.......           ...+..+....  .........|+.||.+.+.+++..+.    .|+.+..+.||.|-
T Consensus      1107 vSS~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~Y~~sK~~aE~l~~~~~~----~g~~~~i~Rpg~v~ 1180 (1389)
T TIGR03443      1107 VSSTSALDTEYYVNLSDELVQAGGAGIPESDDLM--GSSKGLGTGYGQSKWVAEYIIREAGK----RGLRGCIVRPGYVT 1180 (1389)
T ss_pred             EeCeeecCcccccchhhhhhhccCCCCCcccccc--cccccCCCChHHHHHHHHHHHHHHHh----CCCCEEEECCCccc
Confidence            999865532100           00000000000  00111235699999999998887543    37999999999997

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=98.65  E-value=1.9e-07  Score=78.62  Aligned_cols=180  Identities=13%  Similarity=0.006  Sum_probs=121.1

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhC--CCCceEEEEccCCChHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEK--PSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v   99 (292)
                      +|+++ |||-|      +--|.-+   +.-|.+.|+.|.+  |. ......-. +|....  .+.++.++.+||+|..++
T Consensus         2 ~K~AL-ITGIT------GQDGsYL---a~lLLekGY~VhGi~Rrss~~n~~ri-~L~~~~~~~~~~l~l~~gDLtD~~~l   70 (345)
T COG1089           2 GKVAL-ITGIT------GQDGSYL---AELLLEKGYEVHGIKRRSSSFNTPRI-HLYEDPHLNDPRLHLHYGDLTDSSNL   70 (345)
T ss_pred             CceEE-Eeccc------CCchHHH---HHHHHhcCcEEEEEeeccccCCcccc-eeccccccCCceeEEEeccccchHHH
Confidence            67888 99999      7778888   4556688888875  32 11111111 221111  144689999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      .++++++     .+|-+.|-|+-..  -..+.+.-+.+.+++.+|+..|+++..-+-  ..+  .|+..-||+.-+. ..
T Consensus        71 ~r~l~~v-----~PdEIYNLaAQS~--V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~--~~~--~rfYQAStSE~fG-~v  138 (345)
T COG1089          71 LRILEEV-----QPDEIYNLAAQSH--VGVSFEQPEYTADVDAIGTLRLLEAIRILG--EKK--TRFYQASTSELYG-LV  138 (345)
T ss_pred             HHHHHhc-----Cchhheecccccc--ccccccCcceeeeechhHHHHHHHHHHHhC--Ccc--cEEEecccHHhhc-Cc
Confidence            9999888     5888888887653  233455556788999999999999876443  223  6887777764332 21


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc---CCCeEEEEecCC
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY---KYKIALSSRHCC  234 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~---~~gi~v~~v~PG  234 (292)
                      +..       ..++..+|.+.+.|+.+|....-++..+...+.   ..||-+|.=.|.
T Consensus       139 ~~~-------pq~E~TPFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~  189 (345)
T COG1089         139 QEI-------PQKETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPL  189 (345)
T ss_pred             ccC-------ccccCCCCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCCC
Confidence            100       012345667889999999999988888877764   336777766654

>KOG4022|consensus

Probab=98.58  E-value=2e-06  Score=66.62  Aligned_cols=176  Identities=10%  Similarity=-0.002  Sum_probs=111.7

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      +.++ |-|+-      +.+|.++   +..+-..++-|..-+...-++          ...-..+..|-+=-++-+.+.++
T Consensus         4 grVi-vYGGk------GALGSac---v~~FkannywV~siDl~eNe~----------Ad~sI~V~~~~swtEQe~~v~~~   63 (236)
T KOG4022|consen    4 GRVI-VYGGK------GALGSAC---VEFFKANNYWVLSIDLSENEQ----------ADSSILVDGNKSWTEQEQSVLEQ   63 (236)
T ss_pred             ceEE-EEcCc------chHhHHH---HHHHHhcCeEEEEEeeccccc----------ccceEEecCCcchhHHHHHHHHH
Confidence            3566 78887      8999999   666667888887544222111          12233455555556666677776


Q ss_pred             HHHhCC--CccEEEEcccccCC--CCCCC-CcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC-cccccccC
Q psy4251         106 YQKKFR--SLNILVLNAGVFGL--GFSHT-EDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS-ESHRYSYI  179 (292)
Q Consensus       106 ~~~~~~--~id~lI~nAg~~~~--~~~~~-~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS-~~~~~~~~  179 (292)
                      +-+...  ++|.+++-||-+..  ....+ .++-+-++...+...-.-.+....+|+.     |-++-++. -.+..+. 
T Consensus        64 vg~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~-----GGLL~LtGAkaAl~gT-  137 (236)
T KOG4022|consen   64 VGSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKP-----GGLLQLTGAKAALGGT-  137 (236)
T ss_pred             HHHhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCC-----CceeeecccccccCCC-
Confidence            665443  79999999987631  11111 1122334444455555555555555542     44444444 4444433 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-cccccccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKKWWR  245 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~~~~  245 (292)
                                 |       ++-.|+.+|++++.++++|+.+-.  +.|--+.+|.|-..+ +|.|++.+
T Consensus       138 -----------P-------gMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwMP  188 (236)
T KOG4022|consen  138 -----------P-------GMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWMP  188 (236)
T ss_pred             -----------C-------cccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccCC
Confidence                       4       899999999999999999998764  236788899999999 99998754

>PRK08309 short chain dehydrogenase; Provisional

Probab=98.53  E-value=9.9e-07  Score=71.17  Aligned_cols=82  Identities=15%  Similarity=0.063  Sum_probs=64.7

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+       |+|.++   +..|.+.|+.|+  .|+.++++.....+..   ..++.++++|++|.+++.++++
T Consensus         2 ~vl-VtGGt-------G~gg~l---a~~L~~~G~~V~v~~R~~~~~~~l~~~l~~---~~~i~~~~~Dv~d~~sv~~~i~   67 (177)
T PRK08309          2 HAL-VIGGT-------GMLKRV---SLWLCEKGFHVSVIARREVKLENVKRESTT---PESITPLPLDYHDDDALKLAIK   67 (177)
T ss_pred             EEE-EECcC-------HHHHHH---HHHHHHCcCEEEEEECCHHHHHHHHHHhhc---CCcEEEEEccCCCHHHHHHHHH
Confidence            466 99995       677777   667778887765  4887777666555532   3478899999999999999999


Q ss_pred             HHHHhCCCccEEEEcccc
Q psy4251         105 EYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~  122 (292)
                      .+.++++++|++|+..-.
T Consensus        68 ~~l~~~g~id~lv~~vh~   85 (177)
T PRK08309         68 STIEKNGPFDLAVAWIHS   85 (177)
T ss_pred             HHHHHcCCCeEEEEeccc
Confidence            999989999999987654

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=98.45  E-value=2.5e-06  Score=74.14  Aligned_cols=95  Identities=9%  Similarity=-0.108  Sum_probs=57.3

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  107 (292)
                      |||||+      +.||..+   +..|.+.|+.|++  |+.++.....          ...  ..|+.. ..       ..
T Consensus         2 lVtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~--~~~~~~-~~-------~~   52 (292)
T TIGR01777         2 LITGGT------GFIGRAL---TQRLTKDGHEVTILTRSPPAGANTK----------WEG--YKPWAP-LA-------ES   52 (292)
T ss_pred             EEEccc------chhhHHH---HHHHHHcCCEEEEEeCCCCCCCccc----------cee--eecccc-cc-------hh
Confidence            499999      9999999   5556677877764  6544321110          001  112221 11       11


Q ss_pred             HhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHH
Q psy4251         108 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLE  153 (292)
Q Consensus       108 ~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll  153 (292)
                      .....+|+|||+||........+.+..+..+++|+.++..+++++.
T Consensus        53 ~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~   98 (292)
T TIGR01777        53 EALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIA   98 (292)
T ss_pred             hhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHH
Confidence            2235699999999975322222334445678899999888887765

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=98.37  E-value=9.8e-07  Score=74.13  Aligned_cols=101  Identities=10%  Similarity=0.074  Sum_probs=70.9

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      .+-+ ||..+     ++|||+++   +.+++.+|+.|+.-+...      .+..   .   ....+|+++.+++.++++.
T Consensus        15 ~VR~-itN~S-----SGgIG~AI---A~~la~~Ga~Vvlv~~~~------~l~~---~---~~~~~Dv~d~~s~~~l~~~   73 (227)
T TIGR02114        15 SVRS-ITNHS-----TGHLGKII---TETFLSAGHEVTLVTTKR------ALKP---E---PHPNLSIREIETTKDLLIT   73 (227)
T ss_pred             Ccee-ecCCc-----ccHHHHHH---HHHHHHCCCEEEEEcChh------hccc---c---cCCcceeecHHHHHHHHHH
Confidence            3445 66553     28899999   666778898887532110      1111   0   1246899999999999999


Q ss_pred             HHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHH
Q psy4251         106 YQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTL  150 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~  150 (292)
                      +.+.++++|++|||||+..  +..+.+.++|+++   +..+.+++++
T Consensus        74 v~~~~g~iDiLVnnAgv~d~~~~~~~s~e~~~~~---~~~~~~~~~~  117 (227)
T TIGR02114        74 LKELVQEHDILIHSMAVSDYTPVYMTDLEQVQAS---DNLNEFLSKQ  117 (227)
T ss_pred             HHHHcCCCCEEEECCEeccccchhhCCHHHHhhh---cchhhhhccc
Confidence            9999999999999999753  4566777777766   4455666655

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.23  E-value=3.2e-06  Score=73.76  Aligned_cols=82  Identities=21%  Similarity=0.154  Sum_probs=57.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcCH---HHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNCW---DKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~~---~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      ++++|+++ |+|+       +|+|+++   +..|+..|+   .|+.|+.   +++++..+++.+..  ..+.+..+|+++
T Consensus       123 ~~~~k~vl-I~GA-------GGagrAi---a~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~~  189 (289)
T PRK12548        123 DVKGKKLT-VIGA-------GGAATAI---QVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV--PECIVNVYDLND  189 (289)
T ss_pred             CcCCCEEE-EECC-------cHHHHHH---HHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC--CCceeEEechhh
Confidence            46789999 9999       7999999   444555554   4456886   78888888886553  345566789887


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      .+++.+.++       ..|+||||-.+.
T Consensus       190 ~~~~~~~~~-------~~DilINaTp~G  210 (289)
T PRK12548        190 TEKLKAEIA-------SSDILVNATLVG  210 (289)
T ss_pred             hhHHHhhhc-------cCCEEEEeCCCC
Confidence            766654332       359999987553

>PLN00016 RNA-binding protein; Provisional

Probab=98.23  E-value=2.9e-05  Score=70.48  Aligned_cols=149  Identities=11%  Similarity=-0.063  Sum_probs=85.7

Q ss_pred             CCceEEEEc----CCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHH-------HHHHhhCCCCceEEEE
Q psy4251          24 NGCLAILCT----GDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAI-------SKILTEKPSAQCIAME   90 (292)
Q Consensus        24 ~g~~~vlIt----Ga~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~-------~~l~~~~~~~~~~~~~   90 (292)
                      ..++++ ||    ||+      +-||..+   +.+|.+.|+.|++  |+........       .++.    ...+.++.
T Consensus        51 ~~~~VL-Vt~~~~Gat------G~iG~~l---v~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~----~~~v~~v~  116 (378)
T PLN00016         51 EKKKVL-IVNTNSGGH------AFIGFYL---AKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS----SAGVKTVW  116 (378)
T ss_pred             ccceEE-EEeccCCCc------eeEhHHH---HHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh----hcCceEEE
Confidence            346677 99    999      9999999   5566677877764  6644322111       1221    12478889


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          91 LDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        91 ~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      +|+.|   +.+++    + ...+|+||++++..                  ..+    ++.++..+++.+.  .++|++|
T Consensus       117 ~D~~d---~~~~~----~-~~~~d~Vi~~~~~~------------------~~~----~~~ll~aa~~~gv--kr~V~~S  164 (378)
T PLN00016        117 GDPAD---VKSKV----A-GAGFDVVYDNNGKD------------------LDE----VEPVADWAKSPGL--KQFLFCS  164 (378)
T ss_pred             ecHHH---HHhhh----c-cCCccEEEeCCCCC------------------HHH----HHHHHHHHHHcCC--CEEEEEc
Confidence            99876   22222    1 13689999987621                  111    2334444444444  6999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      |...+..... .....+       ....+   +. +|...+.+.+       ..++.+..+.|+.+-
T Consensus       165 S~~vyg~~~~-~p~~E~-------~~~~p---~~-sK~~~E~~l~-------~~~l~~~ilRp~~vy  212 (378)
T PLN00016        165 SAGVYKKSDE-PPHVEG-------DAVKP---KA-GHLEVEAYLQ-------KLGVNWTSFRPQYIY  212 (378)
T ss_pred             cHhhcCCCCC-CCCCCC-------CcCCC---cc-hHHHHHHHHH-------HcCCCeEEEeceeEE
Confidence            9865432110 000000       00111   11 7877776543       236889999999887

>KOG1221|consensus

Probab=98.20  E-value=1.7e-05  Score=72.34  Aligned_cols=191  Identities=13%  Similarity=0.033  Sum_probs=113.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcC------HHH-----HHHHHHHHHhhCCC--Cce
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNC------WDK-----ANDAISKILTEKPS--AQC   86 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~------~~~-----~~~~~~~l~~~~~~--~~~   86 (292)
                      -++||+++ |||||      +-+|+.+.+.+++-...-..|+  .|.      .++     .+.+-+++++..|.  .++
T Consensus         9 f~~~k~i~-vTG~t------GFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv   81 (467)
T KOG1221|consen    9 FYKNKTIF-VTGAT------GFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKV   81 (467)
T ss_pred             HhCCCeEE-EEccc------chhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecc
Confidence            36899999 99999      9999999666555543323444  232      122     22334455555443  488


Q ss_pred             EEEEccCCChHHHHH-H-HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCc
Q psy4251          87 IAMELDLCRLKSVKK-F-AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA  164 (292)
Q Consensus        87 ~~~~~Dls~~~~v~~-~-~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~  164 (292)
                      ..+.+|+++++-=-+ - .+.+   ...+|++||+|+...     -.+-++..+.+|..|+..+++.+....+-     .
T Consensus        82 ~pi~GDi~~~~LGis~~D~~~l---~~eV~ivih~AAtvr-----Fde~l~~al~iNt~Gt~~~l~lak~~~~l-----~  148 (467)
T KOG1221|consen   82 VPIAGDISEPDLGISESDLRTL---ADEVNIVIHSAATVR-----FDEPLDVALGINTRGTRNVLQLAKEMVKL-----K  148 (467)
T ss_pred             eeccccccCcccCCChHHHHHH---HhcCCEEEEeeeeec-----cchhhhhhhhhhhHhHHHHHHHHHHhhhh-----h
Confidence            888999987643111 1 1112   236999999999753     34456788999999999999988765432     4


Q ss_pred             EEEEEcCcccccccCC-CCCCC-------cc------ccCc-C-----CCCCC-hhhhHHHHhHHHHHHHHHHHHhHhcC
Q psy4251         165 RVVVVSSESHRYSYIT-KDTIS-------KS------VLSV-E-----NYSDF-WAMTAYNDTKLCNVLFGEKLATLWYK  223 (292)
Q Consensus       165 ~iV~vsS~~~~~~~~~-~~~~~-------~~------~~~~-~-----~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~  223 (292)
                      -.|.||+.-+...... .+.+.       .+      ..-. +     .+.-. .....|.-+|+..+++...-+..   
T Consensus       149 ~~vhVSTAy~n~~~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~~---  225 (467)
T KOG1221|consen  149 ALVHVSTAYSNCNVGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAEN---  225 (467)
T ss_pred             eEEEeehhheecccccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhccC---
Confidence            6777877644311100 01010       00      0000 0     00000 12357888999888887765554   


Q ss_pred             CCeEEEEecCCccc
Q psy4251         224 YKIALSSRHCCWKI  237 (292)
Q Consensus       224 ~gi~v~~v~PG~v~  237 (292)
                        +.+..+.|..|-
T Consensus       226 --lPivIiRPsiI~  237 (467)
T KOG1221|consen  226 --LPLVIIRPSIIT  237 (467)
T ss_pred             --CCeEEEcCCcee
Confidence              456777777666

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=98.19  E-value=8.2e-05  Score=69.13  Aligned_cols=192  Identities=13%  Similarity=0.076  Sum_probs=119.9

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC---HHHHHHHHHHHHhhC--CCCceEEEEccCC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC---WDKANDAISKILTEK--PSAQCIAMELDLC   94 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~---~~~~~~~~~~l~~~~--~~~~~~~~~~Dls   94 (292)
                      .....++.++ ||||+     .+-||.++   +..|...|+.||+..   .+.-.+..+.|-..+  ++..+.+++++++
T Consensus       391 ~~~y~d~val-VTGA~-----~gSIaa~V---v~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~  461 (866)
T COG4982         391 GGTYGDKVAL-VTGAS-----KGSIAAAV---VARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMG  461 (866)
T ss_pred             CCCcccceEE-EecCC-----CcchHHHH---HHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEecccc
Confidence            4667788999 99998     25578777   899999999999732   334445555554333  3678999999999


Q ss_pred             ChHHHHHHHHHHHHhCC--------------CccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh
Q psy4251          95 RLKSVKKFAEEYQKKFR--------------SLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  158 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~--------------~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~  158 (292)
                      +..+|+.+++.|-.+..              .+|.++-.|+.-  +...+.... -|..+.+-+.+...|+-.+.+.-..
T Consensus       462 SysDVdAlIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsr-aE~~~rilLw~V~Rliggl~~~~s~  540 (866)
T COG4982         462 SYSDVDALIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSR-AEFAMRILLWNVLRLIGGLKKQGSS  540 (866)
T ss_pred             chhhHHHHHHHhccccccccCCcceecccccCcceeeecccCCccCccccCCch-HHHHHHHHHHHHHHHHHHhhhhccc
Confidence            99999999999986532              256666666543  212222221 2333344444444444444333221


Q ss_pred             cC-CCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHh--cCCCeEEEEecCCc
Q psy4251         159 GA-KLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLW--YKYKIALSSRHCCW  235 (292)
Q Consensus       159 ~~-~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~--~~~gi~v~~v~PG~  235 (292)
                      .. ...-+||.-+|.-.                    ..|.+-..|+-+|++++.+...+..|-  +. -+.+..-.-||
T Consensus       541 r~v~~R~hVVLPgSPNr--------------------G~FGgDGaYgEsK~aldav~~RW~sEs~Wa~-~vsl~~A~IGW  599 (866)
T COG4982         541 RGVDTRLHVVLPGSPNR--------------------GMFGGDGAYGESKLALDAVVNRWHSESSWAA-RVSLAHALIGW  599 (866)
T ss_pred             cCcccceEEEecCCCCC--------------------CccCCCcchhhHHHHHHHHHHHhhccchhhH-HHHHhhhheee
Confidence            11 10134555555421                    223366799999999998877666553  32 26777778899


Q ss_pred             cc--ccccc
Q psy4251         236 KI--TVSKK  242 (292)
Q Consensus       236 v~--~~~~~  242 (292)
                      ++  .++.+
T Consensus       600 trGTGLMg~  608 (866)
T COG4982         600 TRGTGLMGH  608 (866)
T ss_pred             eccccccCC
Confidence            99  66554

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.18  E-value=2.5e-05  Score=72.53  Aligned_cols=66  Identities=14%  Similarity=-0.013  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCC
Q psy4251         145 HFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKY  224 (292)
Q Consensus       145 ~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~  224 (292)
                      .+.+++..++.|..  .  +|||+++|.....                      ....|+.+|+++..+++++++|+ ..
T Consensus       102 ~~~~~~~~l~~l~~--~--griv~i~s~~~~~----------------------~~~~~~~akaal~gl~rsla~E~-~~  154 (450)
T PRK08261        102 LYEFFHPVLRSLAP--C--GRVVVLGRPPEAA----------------------ADPAAAAAQRALEGFTRSLGKEL-RR  154 (450)
T ss_pred             HHHHHHHHHHhccC--C--CEEEEEccccccC----------------------CchHHHHHHHHHHHHHHHHHHHh-hc
Confidence            34566667777753  3  8999999975542                      23469999999999999999999 66


Q ss_pred             CeEEEEecCCccc
Q psy4251         225 KIALSSRHCCWKI  237 (292)
Q Consensus       225 gi~v~~v~PG~v~  237 (292)
                      +++++.+.|+...
T Consensus       155 gi~v~~i~~~~~~  167 (450)
T PRK08261        155 GATAQLVYVAPGA  167 (450)
T ss_pred             CCEEEEEecCCCC
Confidence            9999999998655

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.13  E-value=6.9e-06  Score=74.53  Aligned_cols=83  Identities=11%  Similarity=0.079  Sum_probs=55.9

Q ss_pred             CCCCCceEEEEcCCC--------CCC-CCccc-chhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEE
Q psy4251          21 STYNGCLAILCTGDM--------EFY-PRYTG-LKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIA   88 (292)
Q Consensus        21 ~~l~g~~~vlItGa~--------~~~-~~~~G-iG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~   88 (292)
                      .+++||+++ ||||.        |++ |+++| +|+++   +.++..+|+.|+.  ++.+ .       .  .+.   ..
T Consensus       184 ~~l~gk~vl-ITgG~T~E~ID~VR~isN~SSG~~G~ai---A~~l~~~Ga~V~~v~~~~~-~-------~--~~~---~~  246 (399)
T PRK05579        184 KDLAGKRVL-ITAGPTREPIDPVRYITNRSSGKMGYAL---ARAAARRGADVTLVSGPVN-L-------P--TPA---GV  246 (399)
T ss_pred             cccCCCEEE-EeCCCccccccceeeeccCCcchHHHHH---HHHHHHCCCEEEEeCCCcc-c-------c--CCC---Cc
Confidence            568999999 99990        000 01156 89999   6667778888764  3321 1       0  111   13


Q ss_pred             EEccCCChHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          89 MELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        89 ~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      ..+|+++.+++.+.++   +.++++|++|+|||+.
T Consensus       247 ~~~dv~~~~~~~~~v~---~~~~~~DilI~~Aav~  278 (399)
T PRK05579        247 KRIDVESAQEMLDAVL---AALPQADIFIMAAAVA  278 (399)
T ss_pred             EEEccCCHHHHHHHHH---HhcCCCCEEEEccccc
Confidence            4689998888776655   4578899999999985

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=98.12  E-value=2.1e-05  Score=68.45  Aligned_cols=103  Identities=12%  Similarity=0.018  Sum_probs=67.3

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      ++ |||||      +.+|..+   +.+|.+.|+.|.  +|+.++..           ...+..+.+|+.|.+++.+.++.
T Consensus         2 il-VtGat------G~iG~~v---v~~L~~~g~~V~~~~R~~~~~~-----------~~~~~~~~~d~~d~~~l~~a~~~   60 (285)
T TIGR03649         2 IL-LTGGT------GKTASRI---ARLLQAASVPFLVASRSSSSSA-----------GPNEKHVKFDWLDEDTWDNPFSS   60 (285)
T ss_pred             EE-EEcCC------ChHHHHH---HHHHHhCCCcEEEEeCCCcccc-----------CCCCccccccCCCHHHHHHHHhc
Confidence            45 99999      9999999   555666676655  57765431           12455678999999999988765


Q ss_pred             HHHhCCC-ccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         106 YQKKFRS-LNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       106 ~~~~~~~-id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      . +.+.. +|.++++++...       +..            ...+.++...++.+-  .|||++||..
T Consensus        61 ~-~~~~g~~d~v~~~~~~~~-------~~~------------~~~~~~i~aa~~~gv--~~~V~~Ss~~  107 (285)
T TIGR03649        61 D-DGMEPEISAVYLVAPPIP-------DLA------------PPMIKFIDFARSKGV--RRFVLLSASI  107 (285)
T ss_pred             c-cCcCCceeEEEEeCCCCC-------Chh------------HHHHHHHHHHHHcCC--CEEEEeeccc
Confidence            3 22344 899999876421       110            112334445555555  7999999854

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>KOG2774|consensus

Probab=98.01  E-value=9.1e-06  Score=66.82  Aligned_cols=174  Identities=16%  Similarity=0.095  Sum_probs=109.2

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      -+...++ |||+-      +.+|.++|+.+...-.....|.. +..+-.+   ...+     .--++-.|+-|..+++++
T Consensus        42 ~~~PrvL-ITG~L------GQLG~~~A~LLR~~yGs~~VILS-DI~KPp~---~V~~-----~GPyIy~DILD~K~L~eI  105 (366)
T KOG2774|consen   42 QKAPRVL-ITGSL------GQLGRGLASLLRYMYGSECVILS-DIVKPPA---NVTD-----VGPYIYLDILDQKSLEEI  105 (366)
T ss_pred             CCCCeEE-Eecch------HHHhHHHHHHHHHHhCCccEehh-hccCCch---hhcc-----cCCchhhhhhccccHHHh
Confidence            3455677 99999      99999999887766555544432 2111111   1111     223566888888887776


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      +-.     .+||.+||-.+....   ..+.+..-..+||+.|..++++....+     +  -+|..-|.+.++.+..+..
T Consensus       106 VVn-----~RIdWL~HfSALLSA---vGE~NVpLA~~VNI~GvHNil~vAa~~-----k--L~iFVPSTIGAFGPtSPRN  170 (366)
T KOG2774|consen  106 VVN-----KRIDWLVHFSALLSA---VGETNVPLALQVNIRGVHNILQVAAKH-----K--LKVFVPSTIGAFGPTSPRN  170 (366)
T ss_pred             hcc-----cccceeeeHHHHHHH---hcccCCceeeeecchhhhHHHHHHHHc-----C--eeEeecccccccCCCCCCC
Confidence            432     479999998776422   233445567899999999998876543     2  5666666666665543211


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEe-cCCccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSR-HCCWKI  237 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v-~PG~v~  237 (292)
                      ...--.+..       +...|+.||.-.+.+.+.+..++.   +.+.++ .||.+.
T Consensus       171 PTPdltIQR-------PRTIYGVSKVHAEL~GEy~~hrFg---~dfr~~rfPg~is  216 (366)
T KOG2774|consen  171 PTPDLTIQR-------PRTIYGVSKVHAELLGEYFNHRFG---VDFRSMRFPGIIS  216 (366)
T ss_pred             CCCCeeeec-------CceeechhHHHHHHHHHHHHhhcC---ccceecccCcccc
Confidence            111111122       568899999999999999888874   444444 355443

>KOG1429|consensus

Probab=98.01  E-value=0.00013  Score=61.85  Aligned_cols=174  Identities=8%  Similarity=-0.022  Sum_probs=107.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCH--HHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCW--DKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..+++.+++ ||||.         |+-..+.+.+|...|+.|++-|.  ..-+...+..   ....++..+.-|+..+  
T Consensus        23 ~p~~~lrI~-itGga---------GFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~---~~~~~fel~~hdv~~p--   87 (350)
T KOG1429|consen   23 KPSQNLRIL-ITGGA---------GFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHW---IGHPNFELIRHDVVEP--   87 (350)
T ss_pred             cCCCCcEEE-EecCc---------chHHHHHHHHHHhcCCeEEEEecccccchhhcchh---ccCcceeEEEeechhH--
Confidence            335678899 99999         55555668999999999987442  1222222222   1133566666666654  


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                         +..       .+|-++|-|....|..-...  --+++.+|.+++..++..+...     .  .|++..|++..+.-+
T Consensus        88 ---l~~-------evD~IyhLAapasp~~y~~n--pvktIktN~igtln~lglakrv-----~--aR~l~aSTseVYgdp  148 (350)
T KOG1429|consen   88 ---LLK-------EVDQIYHLAAPASPPHYKYN--PVKTIKTNVIGTLNMLGLAKRV-----G--ARFLLASTSEVYGDP  148 (350)
T ss_pred             ---HHH-------HhhhhhhhccCCCCcccccC--ccceeeecchhhHHHHHHHHHh-----C--ceEEEeecccccCCc
Confidence               322       26888888887765432222  1468999999999888766433     2  688888887555432


Q ss_pred             CCCCCC--CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCcc
Q psy4251         179 ITKDTI--SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWK  236 (292)
Q Consensus       179 ~~~~~~--~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v  236 (292)
                      ......  .|...++     -.+...|.-.|...+.|+.+..++.   ||.|....+-.+
T Consensus       149 ~~hpq~e~ywg~vnp-----igpr~cydegKr~aE~L~~~y~k~~---giE~rIaRifNt  200 (350)
T KOG1429|consen  149 LVHPQVETYWGNVNP-----IGPRSCYDEGKRVAETLCYAYHKQE---GIEVRIARIFNT  200 (350)
T ss_pred             ccCCCccccccccCc-----CCchhhhhHHHHHHHHHHHHhhccc---CcEEEEEeeecc
Confidence            221111  1222222     2256899999999999999988776   455555444333

>KOG1202|consensus

Probab=97.88  E-value=4.4e-05  Score=75.38  Aligned_cols=198  Identities=13%  Similarity=0.010  Sum_probs=134.8

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-HHHHHH--HHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-WDKAND--AISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-~~~~~~--~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|+.+ |+||-      +|.|+++|.++...+.+...+..|+ ....-+  .+...++.  +.++.+-..|++..+..++
T Consensus      1768 eksYi-i~GGL------GGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~--GVqV~vsT~nitt~~ga~~ 1838 (2376)
T KOG1202|consen 1768 EKSYI-IVGGL------GGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRR--GVQVQVSTSNITTAEGARG 1838 (2376)
T ss_pred             cceEE-Eeccc------cchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhc--CeEEEEecccchhhhhHHH
Confidence            46778 99999      9999999888766555544444565 122222  23445555  7788888899999999999


Q ss_pred             HHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++++..+ .+++-.++|-|.+.  +-+.+.++++|+..-+-.+.|+.+|-+.-...-..-    ..+|..||.++-.++.
T Consensus      1839 Li~~s~k-l~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~L----dyFv~FSSvscGRGN~ 1913 (2376)
T KOG1202|consen 1839 LIEESNK-LGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPEL----DYFVVFSSVSCGRGNA 1913 (2376)
T ss_pred             HHHHhhh-cccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCccc----ceEEEEEeecccCCCC
Confidence            9988754 57899999989886  346777999999999999999988776554433211    5788888887666653


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecC---Cccc-cccccc--cccCCccchh
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHC---CWKI-TVSKKW--WRFGTPVRTF  253 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~P---G~v~-~~~~~~--~~~~~~~~~~  253 (292)
                                         +.+.|+-+..+++.+++--..+ .-.|+.|-.=.-   |.+. +|..+.  -..-+|+++.
T Consensus      1914 -------------------GQtNYG~aNS~MERiceqRr~~-GfPG~AiQWGAIGDvGlilEnmgdNdTvvgGTLPQRM~ 1973 (2376)
T KOG1202|consen 1914 -------------------GQTNYGLANSAMERICEQRRHE-GFPGTAIQWGAIGDVGLILENMGDNDTVVGGTLPQRMP 1973 (2376)
T ss_pred             -------------------cccccchhhHHHHHHHHHhhhc-CCCcceeeeecccceeeeeeecCCCCceeccccchhHH
Confidence                               7888999999999888753322 222444443333   3344 555542  2223666766


Q ss_pred             hhh
Q psy4251         254 SWI  256 (292)
Q Consensus       254 ~~~  256 (292)
                      ..+
T Consensus      1974 SCL 1976 (2376)
T KOG1202|consen 1974 SCL 1976 (2376)
T ss_pred             HHH
Confidence            665

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.75  E-value=0.00023  Score=58.38  Aligned_cols=82  Identities=9%  Similarity=0.061  Sum_probs=59.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++++++ |.|++      +++|+.+++.   +...|..|  +.|+.+++++..+++.+..   ......+|+.+.++
T Consensus        24 ~~l~~~~vl-VlGgt------G~iG~~~a~~---l~~~g~~V~l~~R~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~   90 (194)
T cd01078          24 KDLKGKTAV-VLGGT------GPVGQRAAVL---LAREGARVVLVGRDLERAQKAADSLRARF---GEGVGAVETSDDAA   90 (194)
T ss_pred             cCCCCCEEE-EECCC------CHHHHHHHHH---HHHCCCEEEEEcCCHHHHHHHHHHHHhhc---CCcEEEeeCCCHHH
Confidence            467899999 99999      9999999555   44555444  4599999988888876443   23455678888877


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+.++       ..|++|++...
T Consensus        91 ~~~~~~-------~~diVi~at~~  107 (194)
T cd01078          91 RAAAIK-------GADVVFAAGAA  107 (194)
T ss_pred             HHHHHh-------cCCEEEECCCC
Confidence            766543       36888886553

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK12320 hypothetical protein; Provisional

Probab=97.74  E-value=0.0002  Score=69.30  Aligned_cols=101  Identities=11%  Similarity=-0.019  Sum_probs=68.7

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      +-||..+   +.+|.+.|+.|++  |....       .  .  ...+.++++|+++.. +.++  
T Consensus         2 kIL-VTGAa------GFIGs~L---a~~Ll~~G~~Vi~ldr~~~~-------~--~--~~~ve~v~~Dl~d~~-l~~a--   57 (699)
T PRK12320          2 QIL-VTDAT------GAVGRSV---TRQLIAAGHTVSGIAQHPHD-------A--L--DPRVDYVCASLRNPV-LQEL--   57 (699)
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHhCCCEEEEEeCChhh-------c--c--cCCceEEEccCCCHH-HHHH--
Confidence            466 99999      9999999   6667788888775  33211       1  1  236788999999873 3222  


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                           ...+|+|||+|+....      +    ...+|+.++.++++++..     .+  .+||++||..
T Consensus        58 -----l~~~D~VIHLAa~~~~------~----~~~vNv~Gt~nLleAA~~-----~G--vRiV~~SS~~  104 (699)
T PRK12320         58 -----AGEADAVIHLAPVDTS------A----PGGVGITGLAHVANAAAR-----AG--ARLLFVSQAA  104 (699)
T ss_pred             -----hcCCCEEEEcCccCcc------c----hhhHHHHHHHHHHHHHHH-----cC--CeEEEEECCC
Confidence                 1358999999986411      1    125788888888887642     23  6899998763

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.72  E-value=0.0011  Score=55.80  Aligned_cols=147  Identities=10%  Similarity=-0.068  Sum_probs=82.7

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  107 (292)
                      +|+||+      +.+|+.+++.+.+   .++.|  +.|+..+  +..++++..    .+.++++|+.|.+++.+.++   
T Consensus         2 ~V~Gat------G~~G~~v~~~L~~---~~~~V~~l~R~~~~--~~~~~l~~~----g~~vv~~d~~~~~~l~~al~---   63 (233)
T PF05368_consen    2 LVTGAT------GNQGRSVVRALLS---AGFSVRALVRDPSS--DRAQQLQAL----GAEVVEADYDDPESLVAALK---   63 (233)
T ss_dssp             EEETTT------SHHHHHHHHHHHH---TTGCEEEEESSSHH--HHHHHHHHT----TTEEEES-TT-HHHHHHHHT---
T ss_pred             EEECCc------cHHHHHHHHHHHh---CCCCcEEEEeccch--hhhhhhhcc----cceEeecccCCHHHHHHHHc---
Confidence            499999      9999999665554   55555  4577622  334445543    34567999999888776643   


Q ss_pred             HhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCcc
Q psy4251         108 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS  187 (292)
Q Consensus       108 ~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~  187 (292)
                          .+|.|+++-+...      ...        ......+++++..    .+-  .++|+ ||........        
T Consensus        64 ----g~d~v~~~~~~~~------~~~--------~~~~~~li~Aa~~----agV--k~~v~-ss~~~~~~~~--------  110 (233)
T PF05368_consen   64 ----GVDAVFSVTPPSH------PSE--------LEQQKNLIDAAKA----AGV--KHFVP-SSFGADYDES--------  110 (233)
T ss_dssp             ----TCSEEEEESSCSC------CCH--------HHHHHHHHHHHHH----HT---SEEEE-SEESSGTTTT--------
T ss_pred             ----CCceEEeecCcch------hhh--------hhhhhhHHHhhhc----ccc--ceEEE-EEeccccccc--------
Confidence                5899998877542      111        1122334555443    233  57774 5543332110        


Q ss_pred             ccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         188 VLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       188 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                            ...+ +...+-..|..++.+.+..       ++..+.+.||+.. ++..
T Consensus       111 ------~~~~-p~~~~~~~k~~ie~~l~~~-------~i~~t~i~~g~f~e~~~~  151 (233)
T PF05368_consen  111 ------SGSE-PEIPHFDQKAEIEEYLRES-------GIPYTIIRPGFFMENLLP  151 (233)
T ss_dssp             ------TTST-THHHHHHHHHHHHHHHHHC-------TSEBEEEEE-EEHHHHHT
T ss_pred             ------cccc-ccchhhhhhhhhhhhhhhc-------cccceeccccchhhhhhh
Confidence                  0111 2233334676665544432       7999999999877 5544

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=97.69  E-value=9.7e-05  Score=66.89  Aligned_cols=113  Identities=9%  Similarity=0.039  Sum_probs=68.3

Q ss_pred             CCCCCceEEEEcCCC--------CCC-CCccc-chhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEE
Q psy4251          21 STYNGCLAILCTGDM--------EFY-PRYTG-LKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIA   88 (292)
Q Consensus        21 ~~l~g~~~vlItGa~--------~~~-~~~~G-iG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~   88 (292)
                      .+++||+++ ||||.        |++ +.++| +|.++   +.++..+|+.|+.  +....          ..|. .  .
T Consensus       181 ~~~~~~~vl-it~g~t~E~iD~VR~itN~SSG~~g~~~---a~~~~~~Ga~V~~~~g~~~~----------~~~~-~--~  243 (390)
T TIGR00521       181 EDLEGKRVL-ITAGPTREPIDPVRFISNLSSGKMGLAL---AEAAYKRGADVTLITGPVSL----------LTPP-G--V  243 (390)
T ss_pred             cccCCceEE-EecCCccCCCCceeeecCCCcchHHHHH---HHHHHHCCCEEEEeCCCCcc----------CCCC-C--c
Confidence            468999999 99982        011 12377 99999   6667788888764  22211          0111 2  2


Q ss_pred             EEccCCChHHH-HHHHHHHHHhCCCccEEEEcccccC-CCCCCCC---cchhhhhhhhhhHHHHHHHHHH
Q psy4251          89 MELDLCRLKSV-KKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTE---DGFETTFQVNHLAHFYLTLQLE  153 (292)
Q Consensus        89 ~~~Dls~~~~v-~~~~~~~~~~~~~id~lI~nAg~~~-~~~~~~~---~~~~~~~~vN~~~~~~l~~~ll  153 (292)
                      ..+|+++.++. +.+.+++   .+++|++|+|||+.. .+.+...   +..+..+.+|+.-+--++..+.
T Consensus       244 ~~~~v~~~~~~~~~~~~~~---~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~  310 (390)
T TIGR00521       244 KSIKVSTAEEMLEAALNEL---AKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVR  310 (390)
T ss_pred             EEEEeccHHHHHHHHHHhh---cccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHH
Confidence            56899998888 5555443   467999999999862 1111111   1112345566666666666554

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=97.56  E-value=0.00028  Score=59.35  Aligned_cols=95  Identities=13%  Similarity=0.139  Sum_probs=57.6

Q ss_pred             eEEEEcCCCCCCCCccc-chhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTG-LKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~G-iG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      +-+ ||+.+      +| ||+++   +.+|..+|+.|+.  |...        ... .+...+.+++++     +...+.
T Consensus        17 VR~-itN~S------SG~iG~aL---A~~L~~~G~~V~li~r~~~--------~~~-~~~~~v~~i~v~-----s~~~m~   72 (229)
T PRK06732         17 VRG-ITNHS------TGQLGKII---AETFLAAGHEVTLVTTKTA--------VKP-EPHPNLSIIEIE-----NVDDLL   72 (229)
T ss_pred             cee-ecCcc------chHHHHHH---HHHHHhCCCEEEEEECccc--------ccC-CCCCCeEEEEEe-----cHHHHH
Confidence            556 88777      66 99999   5556678887764  4321        001 011245555532     233333


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHH
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAH  145 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~  145 (292)
                      +.+.+.++.+|+||||||+..  +....+.+++..++++|.+..
T Consensus        73 ~~l~~~~~~~DivIh~AAvsd~~~~~~~~~~~~~~~~~v~~~~~  116 (229)
T PRK06732         73 ETLEPLVKDHDVLIHSMAVSDYTPVYMTDLEEVSASDNLNEFLT  116 (229)
T ss_pred             HHHHHHhcCCCEEEeCCccCCceehhhhhhhhhhhhhhhhhhhc
Confidence            344444567999999999863  334456777888887765544

>KOG1431|consensus

Probab=97.47  E-value=0.0012  Score=54.26  Aligned_cols=149  Identities=11%  Similarity=0.019  Sum_probs=83.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEE---EccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAM---ELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~---~~Dls~~~~v~~~  102 (292)
                      ++++ |||++      +=.|.++.+.+.+-+..                        +.+..++   .+||++.++++++
T Consensus         2 ~kIl-VtGg~------GLVGsAi~~vv~~q~~~------------------------~e~wvf~~skd~DLt~~a~t~~l   50 (315)
T KOG1431|consen    2 KKIL-VTGGT------GLVGSAIVKVVQEQGFD------------------------DENWVFIGSKDADLTNLADTRAL   50 (315)
T ss_pred             ceEE-EecCC------chHHHHHHHHHHhcCCC------------------------CcceEEeccccccccchHHHHHH
Confidence            4567 99998      77899995553332221                        2233333   5999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccCC-CCCC--CCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGL-GFSH--TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~-~~~~--~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++..     ++-.|||-|+..+. +...  ..|-+...+++    .-++++.+-.+    ..  -++|+..|. +..+..
T Consensus        51 F~~e-----kPthVIhlAAmVGGlf~N~~ynldF~r~Nl~i----ndNVlhsa~e~----gv--~K~vsclSt-CIfPdk  114 (315)
T KOG1431|consen   51 FESE-----KPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQI----NDNVLHSAHEH----GV--KKVVSCLST-CIFPDK  114 (315)
T ss_pred             Hhcc-----CCceeeehHhhhcchhhcCCCchHHHhhccee----chhHHHHHHHh----ch--hhhhhhcce-eecCCC
Confidence            8875     46778887776543 3332  23333333333    33333333222    11  355555553 444443


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK  223 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~  223 (292)
                      ....++...+..  ...-+..-.|+.+|.++.-..++++.++..
T Consensus       115 t~yPIdEtmvh~--gpphpsN~gYsyAKr~idv~n~aY~~qhg~  156 (315)
T KOG1431|consen  115 TSYPIDETMVHN--GPPHPSNFGYSYAKRMIDVQNQAYRQQHGR  156 (315)
T ss_pred             CCCCCCHHHhcc--CCCCCCchHHHHHHHHHHHHHHHHHHHhCC
Confidence            333333222211  000113457999998888777888888753

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.45  E-value=0.00061  Score=52.40  Aligned_cols=79  Identities=10%  Similarity=0.054  Sum_probs=55.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+++|++++ |-|+       +|.|++++..+..++.....|+.|+.++++++.+++.    +..+.++..  .+   +.
T Consensus         8 ~~l~~~~vl-viGa-------Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~----~~~~~~~~~--~~---~~   70 (135)
T PF01488_consen    8 GDLKGKRVL-VIGA-------GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG----GVNIEAIPL--ED---LE   70 (135)
T ss_dssp             STGTTSEEE-EESS-------SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT----GCSEEEEEG--GG---HC
T ss_pred             CCcCCCEEE-EECC-------HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC----ccccceeeH--HH---HH
Confidence            478899999 9998       7999999766666644446677799999999988882    334555543  22   22


Q ss_pred             HHHHHHHHhCCCccEEEEccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      +.   +    ...|++|++.+..
T Consensus        71 ~~---~----~~~DivI~aT~~~   86 (135)
T PF01488_consen   71 EA---L----QEADIVINATPSG   86 (135)
T ss_dssp             HH---H----HTESEEEE-SSTT
T ss_pred             HH---H----hhCCeEEEecCCC
Confidence            22   2    2479999998765

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=97.38  E-value=0.0027  Score=53.96  Aligned_cols=161  Identities=14%  Similarity=0.027  Sum_probs=85.1

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHH
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~  107 (292)
                      +|||||      +=||.++   +.+|-..|+.|+  .|+..+.++..        ...+.       ..+.+.+    ..
T Consensus         2 liTGgT------GlIG~~L---~~~L~~~gh~v~iltR~~~~~~~~~--------~~~v~-------~~~~~~~----~~   53 (297)
T COG1090           2 LITGGT------GLIGRAL---TARLRKGGHQVTILTRRPPKASQNL--------HPNVT-------LWEGLAD----AL   53 (297)
T ss_pred             eEeccc------cchhHHH---HHHHHhCCCeEEEEEcCCcchhhhc--------Ccccc-------ccchhhh----cc
Confidence            499999      8899999   777766666655  57765543311        00111       1111111    11


Q ss_pred             HhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCcc
Q psy4251         108 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS  187 (292)
Q Consensus       108 ~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~  187 (292)
                      .  .++|+|||-||..-.....+.+.=+.    =..+.+..++.+.....+... +.++..-+|..++.+......+..+
T Consensus        54 ~--~~~DavINLAG~~I~~rrWt~~~K~~----i~~SRi~~T~~L~e~I~~~~~-~P~~~isaSAvGyYG~~~~~~~tE~  126 (297)
T COG1090          54 T--LGIDAVINLAGEPIAERRWTEKQKEE----IRQSRINTTEKLVELIAASET-KPKVLISASAVGYYGHSGDRVVTEE  126 (297)
T ss_pred             c--CCCCEEEECCCCccccccCCHHHHHH----HHHHHhHHHHHHHHHHHhccC-CCcEEEecceEEEecCCCceeeecC
Confidence            1  16999999999752112123332222    255778888888888875432 1566666666677665311111111


Q ss_pred             ccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         188 VLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       188 ~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                        .+ ..++|....++.-         +..+......|+||..+.-|.|.
T Consensus       127 --~~-~g~~Fla~lc~~W---------E~~a~~a~~~gtRvvllRtGvVL  164 (297)
T COG1090         127 --SP-PGDDFLAQLCQDW---------EEEALQAQQLGTRVVLLRTGVVL  164 (297)
T ss_pred             --CC-CCCChHHHHHHHH---------HHHHhhhhhcCceEEEEEEEEEe
Confidence              11 0111211111111         12233334458999999999988

>KOG1203|consensus

Probab=97.26  E-value=0.0052  Score=55.53  Aligned_cols=130  Identities=16%  Similarity=0.040  Sum_probs=79.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ..+-.+++ |+|||      +++|+-+   +..|.++|+.+.  +|+.++.++... +...  ......+..|.....++
T Consensus        76 ~~~~~~Vl-VvGat------G~vG~~i---v~~llkrgf~vra~VRd~~~a~~~~~-~~~~--d~~~~~v~~~~~~~~d~  142 (411)
T KOG1203|consen   76 SKKPTTVL-VVGAT------GKVGRRI---VKILLKRGFSVRALVRDEQKAEDLLG-VFFV--DLGLQNVEADVVTAIDI  142 (411)
T ss_pred             CCCCCeEE-EecCC------CchhHHH---HHHHHHCCCeeeeeccChhhhhhhhc-cccc--ccccceeeeccccccch
Confidence            34455677 99999      9999999   666777887765  488888777665 1111  22444556666665554


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .....+...  -...+++-++|..+...     +..-..+|-+.|..++++++...    .-  .|+|.+||+.....
T Consensus       143 ~~~~~~~~~--~~~~~v~~~~ggrp~~e-----d~~~p~~VD~~g~knlvdA~~~a----Gv--k~~vlv~si~~~~~  207 (411)
T KOG1203|consen  143 LKKLVEAVP--KGVVIVIKGAGGRPEEE-----DIVTPEKVDYEGTKNLVDACKKA----GV--KRVVLVGSIGGTKF  207 (411)
T ss_pred             hhhhhhhcc--ccceeEEecccCCCCcc-----cCCCcceecHHHHHHHHHHHHHh----CC--ceEEEEEeecCccc
Confidence            444333321  13566676666543222     12223456677888888887433    23  69999988765543

>KOG2733|consensus

Probab=97.25  E-value=0.0014  Score=57.39  Aligned_cols=82  Identities=11%  Similarity=0.050  Sum_probs=59.6

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHh-hcC--cEEEEcCHHHHHHHHHHHHhhCCC--CceEEEEccCCChHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLV-QSS--KLFYQNCWDKANDAISKILTEKPS--AQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~-~~g--~~v~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~Dls~~~~v~~~  102 (292)
                      +| |-||+      +=-|.-+.+.+.... ..+  ..|.+||+++++++++++.+..+.  .+...+.||.+|+++++++
T Consensus         8 vV-IyGAS------GfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~em   80 (423)
T KOG2733|consen    8 VV-IYGAS------GFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEM   80 (423)
T ss_pred             EE-EEccc------cccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHH
Confidence            56 99998      555666644333311 134  445579999999999999877542  2334889999999999999


Q ss_pred             HHHHHHhCCCccEEEEccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~  123 (292)
                      +++.       .++|||+|..
T Consensus        81 ak~~-------~vivN~vGPy   94 (423)
T KOG2733|consen   81 AKQA-------RVIVNCVGPY   94 (423)
T ss_pred             Hhhh-------EEEEeccccc
Confidence            8876       7999999964

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.20  E-value=0.0012  Score=59.45  Aligned_cols=78  Identities=10%  Similarity=0.157  Sum_probs=56.7

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      +.++ |.|+       +|+|..+|+-+.+.....++|..|+.+++.++.+..     ..++.++++|+.+.+.+.+++++
T Consensus         2 ~~il-viGa-------G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~-----~~~v~~~~vD~~d~~al~~li~~   68 (389)
T COG1748           2 MKIL-VIGA-------GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI-----GGKVEALQVDAADVDALVALIKD   68 (389)
T ss_pred             CcEE-EECC-------chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc-----cccceeEEecccChHHHHHHHhc
Confidence            3566 8888       799999955444333333455569988888776654     23899999999999888887655


Q ss_pred             HHHhCCCccEEEEccccc
Q psy4251         106 YQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~  123 (292)
                      .       |+||+++...
T Consensus        69 ~-------d~VIn~~p~~   79 (389)
T COG1748          69 F-------DLVINAAPPF   79 (389)
T ss_pred             C-------CEEEEeCCch
Confidence            3       9999988743

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.17  E-value=0.00072  Score=61.57  Aligned_cols=75  Identities=15%  Similarity=0.113  Sum_probs=50.7

Q ss_pred             EcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHh
Q psy4251          31 CTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKK  109 (292)
Q Consensus        31 ItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  109 (292)
                      |-|+       +.+|..+++.+.+.... ...|..|+.+++++..+++    ...++..+++|+.|.+++.+++++    
T Consensus         3 vlG~-------G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~----   67 (386)
T PF03435_consen    3 VLGA-------GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAELLRG----   67 (386)
T ss_dssp             EE---------SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHHHTT----
T ss_pred             EEcC-------cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHHHhc----
Confidence            7777       68999995554433222 2345569999999888776    256999999999999998877544    


Q ss_pred             CCCccEEEEccccc
Q psy4251         110 FRSLNILVLNAGVF  123 (292)
Q Consensus       110 ~~~id~lI~nAg~~  123 (292)
                         -|+|||++|..
T Consensus        68 ---~dvVin~~gp~   78 (386)
T PF03435_consen   68 ---CDVVINCAGPF   78 (386)
T ss_dssp             ---SSEEEE-SSGG
T ss_pred             ---CCEEEECCccc
Confidence               49999999865

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>KOG2865|consensus

Probab=97.17  E-value=0.0043  Score=52.90  Aligned_cols=122  Identities=15%  Similarity=0.028  Sum_probs=80.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +.+|-++- |-|||      +=+|+-+   +.+|+..|..|+.  |..+.   -..+++-...=+++.++..|+.|++||
T Consensus        58 S~sGiVaT-VFGAt------GFlGryv---vnklak~GSQviiPyR~d~~---~~r~lkvmGdLGQvl~~~fd~~DedSI  124 (391)
T KOG2865|consen   58 SVSGIVAT-VFGAT------GFLGRYV---VNKLAKMGSQVIIPYRGDEY---DPRHLKVMGDLGQVLFMKFDLRDEDSI  124 (391)
T ss_pred             cccceEEE-Eeccc------ccccHHH---HHHHhhcCCeEEEeccCCcc---chhheeecccccceeeeccCCCCHHHH
Confidence            35566677 88999      8888888   7888899988886  43221   111222221135899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++.       -++|||-.|.-......+-      -++|+.+.-.+.+.+.    +..-  -|+|.+|+..+.
T Consensus       125 r~vvk~-------sNVVINLIGrd~eTknf~f------~Dvn~~~aerlArick----e~GV--erfIhvS~Lgan  181 (391)
T KOG2865|consen  125 RAVVKH-------SNVVINLIGRDYETKNFSF------EDVNVHIAERLARICK----EAGV--ERFIHVSCLGAN  181 (391)
T ss_pred             HHHHHh-------CcEEEEeeccccccCCccc------ccccchHHHHHHHHHH----hhCh--hheeehhhcccc
Confidence            998655       4899998886433222222      2456666655555443    3333  699999987644

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.00  E-value=0.031  Score=44.74  Aligned_cols=155  Identities=12%  Similarity=-0.042  Sum_probs=93.1

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .+- |.|||      +-.|..+   +.+...+|+.|.  +||..+....          ..+..++.|+-|++++.+.  
T Consensus         2 KIa-iIgAs------G~~Gs~i---~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~--   59 (211)
T COG2910           2 KIA-IIGAS------GKAGSRI---LKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASD--   59 (211)
T ss_pred             eEE-EEecC------chhHHHH---HHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhh--
Confidence            355 78999      7777777   777889998886  5998775431          2567889999999887443  


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                       +    -..|+||..-|...+      +..+.        +..-++++...++.+..  .|+++|+..++-.-...  ..
T Consensus        60 -l----~g~DaVIsA~~~~~~------~~~~~--------~~k~~~~li~~l~~agv--~RllVVGGAGSL~id~g--~r  116 (211)
T COG2910          60 -L----AGHDAVISAFGAGAS------DNDEL--------HSKSIEALIEALKGAGV--PRLLVVGGAGSLEIDEG--TR  116 (211)
T ss_pred             -h----cCCceEEEeccCCCC------ChhHH--------HHHHHHHHHHHHhhcCC--eeEEEEcCccceEEcCC--ce
Confidence             3    357999998776521      11111        11225667777776566  89999988765433211  00


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      -.|....       +..-|..++...+ +.+.|..+   ..+.-+-|+|...-
T Consensus       117 LvD~p~f-------P~ey~~~A~~~ae-~L~~Lr~~---~~l~WTfvSPaa~f  158 (211)
T COG2910         117 LVDTPDF-------PAEYKPEALAQAE-FLDSLRAE---KSLDWTFVSPAAFF  158 (211)
T ss_pred             eecCCCC-------chhHHHHHHHHHH-HHHHHhhc---cCcceEEeCcHHhc
Confidence            0111111       2333444444433 33334433   23777888888666

>KOG1372|consensus

Probab=96.95  E-value=0.003  Score=52.67  Aligned_cols=185  Identities=11%  Similarity=0.050  Sum_probs=104.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE---EcCHHHHHHHHHHHHh---hCCCCceEEEEccCCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY---QNCWDKANDAISKILT---EKPSAQCIAMELDLCR   95 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~---~r~~~~~~~~~~~l~~---~~~~~~~~~~~~Dls~   95 (292)
                      ..+.|.+.||||-+      +.=|.-+|+.   |...|+.|-   -|+..--..-+++|-.   .+.++.....-.|++|
T Consensus        24 ~~r~rkvALITGIt------GQDGSYLaEf---LL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTD   94 (376)
T KOG1372|consen   24 AFRPRKVALITGIT------GQDGSYLAEF---LLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTD   94 (376)
T ss_pred             CcccceEEEEeccc------CCCchHHHHH---HHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccc
Confidence            34555444499999      8888888444   557777664   2443333333344421   1225678888899999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ..++.+++..+     +++-+.|-|+-.+-  ..+-|--+-+-+|...|+..++.+....-..+.   -|+--.|++. .
T Consensus        95 ss~L~k~I~~i-----kPtEiYnLaAQSHV--kvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~---VrfYQAstSE-l  163 (376)
T KOG1372|consen   95 SSCLIKLISTI-----KPTEVYNLAAQSHV--KVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEK---VRFYQASTSE-L  163 (376)
T ss_pred             hHHHHHHHhcc-----Cchhhhhhhhhcce--EEEeecccceeeccchhhhhHHHHHHhcCcccc---eeEEecccHh-h
Confidence            99999998888     35666666664431  112222234556677888888877755433221   3444444432 2


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHh---cCCCeEEEEecC
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLW---YKYKIALSSRHC  233 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~---~~~gi~v~~v~P  233 (292)
                      .+..+.       ....+..+|-+...|+++|....-.+-.+...+   +-.||-+|.=.|
T Consensus       164 yGkv~e-------~PQsE~TPFyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESP  217 (376)
T KOG1372|consen  164 YGKVQE-------IPQSETTPFYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESP  217 (376)
T ss_pred             cccccC-------CCcccCCCCCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCC
Confidence            221100       001123345577889999987554433333333   334676666665

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.88  E-value=0.032  Score=47.72  Aligned_cols=71  Identities=15%  Similarity=0.049  Sum_probs=53.9

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .++ |||||      +.+|..+   +.+|...|+.|.  .|+.+++....         ..+.+...|+.++.++...+ 
T Consensus         2 ~il-V~Gat------G~~G~~~---~~~L~~~~~~v~~~~r~~~~~~~~~---------~~v~~~~~d~~~~~~l~~a~-   61 (275)
T COG0702           2 KIL-VTGAT------GFVGGAV---VRELLARGHEVRAAVRNPEAAAALA---------GGVEVVLGDLRDPKSLVAGA-   61 (275)
T ss_pred             eEE-EEecc------cchHHHH---HHHHHhCCCEEEEEEeCHHHHHhhc---------CCcEEEEeccCCHhHHHHHh-
Confidence            355 99999      9999999   666777787775  48887766544         36888899999998877663 


Q ss_pred             HHHHhCCCccEEEEccccc
Q psy4251         105 EYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~  123 (292)
                            ..+|.+++..+..
T Consensus        62 ------~G~~~~~~i~~~~   74 (275)
T COG0702          62 ------KGVDGVLLISGLL   74 (275)
T ss_pred             ------ccccEEEEEeccc
Confidence                  3468887777754

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.82  E-value=0.0047  Score=57.38  Aligned_cols=75  Identities=11%  Similarity=0.002  Sum_probs=52.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++++|+++ |+|++       ++|.++   +..|++.|+.|.+  ++ .+..++..+++...    .+.++..|..+   
T Consensus         2 ~~~~k~v~-iiG~g-------~~G~~~---A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~---   63 (450)
T PRK14106          2 ELKGKKVL-VVGAG-------VSGLAL---AKFLKKLGAKVILTDEKEEDQLKEALEELGEL----GIELVLGEYPE---   63 (450)
T ss_pred             CcCCCEEE-EECCC-------HHHHHH---HHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCcch---
Confidence            57889999 99995       599999   6667788888875  33 23444444555432    35577788876   


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                               +..+.+|+||+++|+.
T Consensus        64 ---------~~~~~~d~vv~~~g~~   79 (450)
T PRK14106         64 ---------EFLEGVDLVVVSPGVP   79 (450)
T ss_pred             ---------hHhhcCCEEEECCCCC
Confidence                     1125689999999974

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.64  E-value=0.0049  Score=54.74  Aligned_cols=76  Identities=8%  Similarity=-0.003  Sum_probs=49.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHH-hhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDL-VQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l-~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .++++|+++ ||||+      +.||..+++++.+. .....+++.|+.+++++..+++..           .|+.   ++
T Consensus       151 ~~l~~k~VL-VtGAt------G~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----------~~i~---~l  209 (340)
T PRK14982        151 IDLSKATVA-VVGAT------GDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----------GKIL---SL  209 (340)
T ss_pred             cCcCCCEEE-EEccC------hHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----------ccHH---hH
Confidence            478999999 99999      99999996665432 112344556888887776655421           1222   11


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG  124 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~  124 (292)
                      .       +.....|++|+.++...
T Consensus       210 ~-------~~l~~aDiVv~~ts~~~  227 (340)
T PRK14982        210 E-------EALPEADIVVWVASMPK  227 (340)
T ss_pred             H-------HHHccCCEEEECCcCCc
Confidence            1       22345899999998753

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=96.62  E-value=0.021  Score=63.08  Aligned_cols=183  Identities=10%  Similarity=-0.012  Sum_probs=108.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+.|+.++ |++.+      +|++.++   +.+|.++|..|.. +..+........+     +..+-.+.+.-.+.+++.
T Consensus      1752 ~~~~~~~~-v~~d~------~~~~~~L---~~~L~~~G~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 1816 (2582)
T TIGR02813      1752 KQSGANAL-VIDDD------GHNAGVL---AEKLIAAGWQVAVVRSPWVVSHSASPL-----ASAIASVTLGTIDDTSIE 1816 (2582)
T ss_pred             cccCceeE-EEcCC------cchHHHH---HHHHHhCCCeEEEeecccccccccccc-----ccccccccccccchHHHH
Confidence            34577777 55545      7899888   7778889988764 4332111100001     122333455555678888


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCC-CCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFS-HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~-~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      .+++.+.+..+.++.+||-.+......+ .+...+...-...+...|.+.+.+.+.+.....  +.++.|+...+..+..
T Consensus      1817 ~~~~~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~ak~~~~~l~~~~~--~~~~~vsr~~G~~g~~ 1894 (2582)
T TIGR02813      1817 AVIKDIEEKTAQIDGFIHLQPQHKSVADKVDAIELPEAAKQSLMLAFLFAKLLNVKLATNAR--ASFVTVSRIDGGFGYS 1894 (2582)
T ss_pred             HHHHhhhccccccceEEEeccccccccccccccccchhhHHHHHHHHHHHHhhchhhccCCC--eEEEEEEecCCccccC
Confidence            8888888877889999997765421110 011111122223345568888887776655444  7888888876655542


Q ss_pred             CCCCCCccccCcCCCCCChhh--hHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCC
Q psy4251         180 TKDTISKSVLSVENYSDFWAM--TAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCC  234 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~--~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG  234 (292)
                      .             .....+.  ..-....+++.+|+|++++|++..-+|...+.|.
T Consensus      1895 ~-------------~~~~~~~~~~~~~~~~a~l~Gl~Ktl~~E~P~~~~r~vDl~~~ 1938 (2582)
T TIGR02813      1895 N-------------GDADSGTQQVKAELNQAALAGLTKTLNHEWNAVFCRALDLAPK 1938 (2582)
T ss_pred             C-------------ccccccccccccchhhhhHHHHHHhHHHHCCCCeEEEEeCCCC
Confidence            1             0000000  0012346889999999999999877777777775

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.40  E-value=0.013  Score=51.11  Aligned_cols=53  Identities=9%  Similarity=-0.018  Sum_probs=39.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKP   82 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~   82 (292)
                      ++++++++ |.|+       +|.|++++..+..+....+.|+.|+.+++++.++++.+..+
T Consensus       124 ~~~~k~vl-IlGa-------GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~  176 (284)
T PRK12549        124 DASLERVV-QLGA-------GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFP  176 (284)
T ss_pred             CccCCEEE-EECC-------cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCC
Confidence            46788899 9999       79999995554444333344556999999999998876543

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.32  E-value=0.012  Score=50.97  Aligned_cols=80  Identities=10%  Similarity=0.043  Sum_probs=52.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+..|++++ |.||       +|.+++++..+++++.....|+.|+.++++++++.+.+...  .+  ...++.+.+...
T Consensus       122 ~~~~~~~vl-ilGA-------GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~--~~--~~~~~~~~~~~~  189 (283)
T COG0169         122 VDVTGKRVL-ILGA-------GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA--AV--EAAALADLEGLE  189 (283)
T ss_pred             cccCCCEEE-EECC-------cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc--cc--cccccccccccc
Confidence            556789999 9999       79999994444433333355667999999999998876532  11  112232222221


Q ss_pred             HHHHHHHHhCCCccEEEEccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                                 ..|++||+-...
T Consensus       190 -----------~~dliINaTp~G  201 (283)
T COG0169         190 -----------EADLLINATPVG  201 (283)
T ss_pred             -----------ccCEEEECCCCC
Confidence                       479999987654

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.20  E-value=0.069  Score=45.94  Aligned_cols=84  Identities=10%  Similarity=0.099  Sum_probs=54.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC---cEEEEcC-------------------HHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS---KLFYQNC-------------------WDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g---~~v~~r~-------------------~~~~~~~~~~l~   78 (292)
                      ..|++.+++ |-|+       +|+|..+|+.   |+..|   .+|+..+                   ..|.+.+.+.+.
T Consensus        26 ~kL~~s~Vl-VvG~-------GGVGs~vae~---Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~   94 (268)
T PRK15116         26 QLFADAHIC-VVGI-------GGVGSWAAEA---LARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIR   94 (268)
T ss_pred             HHhcCCCEE-EECc-------CHHHHHHHHH---HHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHH
Confidence            447788888 8888       7999999554   55554   3443221                   346677788888


Q ss_pred             hhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccc
Q psy4251          79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+|..++..++--+ +.+.+..++      ....|+||.+.+.
T Consensus        95 ~INP~~~V~~i~~~i-~~e~~~~ll------~~~~D~VIdaiD~  131 (268)
T PRK15116         95 QINPECRVTVVDDFI-TPDNVAEYM------SAGFSYVIDAIDS  131 (268)
T ss_pred             hHCCCcEEEEEeccc-ChhhHHHHh------cCCCCEEEEcCCC
Confidence            888877777764323 344444442      1358888887663

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.19  E-value=0.019  Score=44.89  Aligned_cols=77  Identities=10%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++++++++ |+|+       +++|..+++.+.+.......++.|+.++.++..+++....       +..+.++.++.  
T Consensus        16 ~~~~~~i~-iiG~-------G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--   78 (155)
T cd01065          16 ELKGKKVL-ILGA-------GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-------IAIAYLDLEEL--   78 (155)
T ss_pred             CCCCCEEE-EECC-------cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-------cceeecchhhc--
Confidence            35678888 8887       7999999555443321123344588888887777664320       22334443322  


Q ss_pred             HHHHHHHhCCCccEEEEccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~  123 (292)
                              ....|+||++....
T Consensus        79 --------~~~~Dvvi~~~~~~   92 (155)
T cd01065          79 --------LAEADLIINTTPVG   92 (155)
T ss_pred             --------cccCCEEEeCcCCC
Confidence                    24689999998764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.15  E-value=0.018  Score=49.98  Aligned_cols=50  Identities=12%  Similarity=0.035  Sum_probs=36.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~   78 (292)
                      .++++++++ |+|+       +|+|+++++.+..+.-..+.|+.|+.++++++.+++.
T Consensus       119 ~~~~~k~vl-VlGa-------Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~  168 (278)
T PRK00258        119 VDLKGKRIL-ILGA-------GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFG  168 (278)
T ss_pred             CCCCCCEEE-EEcC-------cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence            367889998 9997       7999999555443322334555699999988887775

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.12  E-value=0.022  Score=49.52  Aligned_cols=82  Identities=7%  Similarity=-0.057  Sum_probs=49.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++++|+++ |-|+       +|-|++++..+.+++.....|+.|+.++++++++++....+...+.  ..|.   .+...
T Consensus       124 ~~~~k~vl-ilGa-------GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~--~~~~---~~~~~  190 (283)
T PRK14027        124 NAKLDSVV-QVGA-------GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVDA---RGIED  190 (283)
T ss_pred             CcCCCeEE-EECC-------cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE--ecCH---hHHHH
Confidence            45688898 9998       7999999444443333334556699999999988876543221121  1222   22111


Q ss_pred             HHHHHHHhCCCccEEEEccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      ..       ...|+|||+..+.
T Consensus       191 ~~-------~~~divINaTp~G  205 (283)
T PRK14027        191 VI-------AAADGVVNATPMG  205 (283)
T ss_pred             HH-------hhcCEEEEcCCCC
Confidence            11       2479999986543

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.12  E-value=0.059  Score=45.35  Aligned_cols=85  Identities=11%  Similarity=-0.029  Sum_probs=55.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKP   82 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~   82 (292)
                      .|++.+++ |.|.       +|+|..+++.+.+.+-...+++..+                   ..|.+.+.+++.+.+|
T Consensus         8 ~L~~~~Vl-VvG~-------GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP   79 (231)
T cd00755           8 KLRNAHVA-VVGL-------GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP   79 (231)
T ss_pred             HHhCCCEE-EECC-------CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence            35677888 8998       7999999555443322223333211                   2477888899999988


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      ..++..+...++. +....++      ....|++|.+..
T Consensus        80 ~~~V~~~~~~i~~-~~~~~l~------~~~~D~VvdaiD  111 (231)
T cd00755          80 ECEVDAVEEFLTP-DNSEDLL------GGDPDFVVDAID  111 (231)
T ss_pred             CcEEEEeeeecCH-hHHHHHh------cCCCCEEEEcCC
Confidence            8888888777663 3333332      135899888754

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.09  E-value=0.031  Score=49.44  Aligned_cols=176  Identities=11%  Similarity=-0.030  Sum_probs=91.5

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ++.+++. |+|++      +.+|..++..+... .....++.-|.++++..+.+|.+..+  ..  ...+.+|+.+..+.
T Consensus         6 ~~~~KI~-IiGaa------G~VGs~~a~~l~~~-~~~~elvL~Di~~~~g~a~Dl~~~~~--~~--~v~~~td~~~~~~~   73 (321)
T PTZ00325          6 LKMFKVA-VLGAA------GGIGQPLSLLLKQN-PHVSELSLYDIVGAPGVAADLSHIDT--PA--KVTGYADGELWEKA   73 (321)
T ss_pred             CCCCEEE-EECCC------CHHHHHHHHHHhcC-CCCCEEEEEecCCCcccccchhhcCc--Cc--eEEEecCCCchHHH
Confidence            4566888 99998      89999995543211 22233433232344443445554422  22  23345554332111


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                             ....|+||++||....+    .+.+...+..|+...-.+++.    +.+...  .++|+++|.-...-..-  
T Consensus        74 -------l~gaDvVVitaG~~~~~----~~tR~dll~~N~~i~~~i~~~----i~~~~~--~~iviv~SNPvdv~~~~--  134 (321)
T PTZ00325         74 -------LRGADLVLICAGVPRKP----GMTRDDLFNTNAPIVRDLVAA----VASSAP--KAIVGIVSNPVNSTVPI--  134 (321)
T ss_pred             -------hCCCCEEEECCCCCCCC----CCCHHHHHHHHHHHHHHHHHH----HHHHCC--CeEEEEecCcHHHHHHH--
Confidence                   24589999999975321    234566777777665555554    444454  67777777633221100  


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                        ....+  .....+++...|+.+-+=-..|-..+++.+.   +....|+ ++|-
T Consensus       135 --~~~~~--~~~sg~p~~~viG~g~LDs~R~r~~la~~l~---v~~~~V~-~~Vl  181 (321)
T PTZ00325        135 --AAETL--KKAGVYDPRKLFGVTTLDVVRARKFVAEALG---MNPYDVN-VPVV  181 (321)
T ss_pred             --HHhhh--hhccCCChhheeechhHHHHHHHHHHHHHhC---cChhheE-EEEE
Confidence              00000  0122344566777763333355666777763   5555555 4444

>PLN00106 malate dehydrogenase

Probab=96.08  E-value=0.0073  Score=53.43  Aligned_cols=157  Identities=13%  Similarity=0.021  Sum_probs=84.4

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .+++. |||++      +.+|..++..+....... ..++..+.  ++....+|.+..+  ..  ...|+++.++..+  
T Consensus        18 ~~KV~-IiGaa------G~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~--~~--~i~~~~~~~d~~~--   82 (323)
T PLN00106         18 GFKVA-VLGAA------GGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT--PA--QVRGFLGDDQLGD--   82 (323)
T ss_pred             CCEEE-EECCC------CHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc--Cc--eEEEEeCCCCHHH--
Confidence            45788 99998      899999955433221111 33333433  2222334443321  11  1123333222222  


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc-----ccc
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR-----YSY  178 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~-----~~~  178 (292)
                           .+...|++|+.||....+    ...++..+..|+.....+.+    .+.+..+  .+||++.|.-..     +..
T Consensus        83 -----~l~~aDiVVitAG~~~~~----g~~R~dll~~N~~i~~~i~~----~i~~~~p--~aivivvSNPvD~~~~i~t~  147 (323)
T PLN00106         83 -----ALKGADLVIIPAGVPRKP----GMTRDDLFNINAGIVKTLCE----AVAKHCP--NALVNIISNPVNSTVPIAAE  147 (323)
T ss_pred             -----HcCCCCEEEEeCCCCCCC----CCCHHHHHHHHHHHHHHHHH----HHHHHCC--CeEEEEeCCCccccHHHHHH
Confidence                 235689999999985332    23466677777766554444    4444444  455555554332     211


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY  222 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~  222 (292)
                      .           ......+++...|+.++.-...|...+|+++.
T Consensus       148 ~-----------~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lg  180 (323)
T PLN00106        148 V-----------LKKAGVYDPKKLFGVTTLDVVRANTFVAEKKG  180 (323)
T ss_pred             H-----------HHHcCCCCcceEEEEecchHHHHHHHHHHHhC
Confidence            0           00122344567788888777788888998885

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.05  E-value=0.027  Score=46.45  Aligned_cols=82  Identities=10%  Similarity=0.138  Sum_probs=56.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC-------------------HHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC-------------------WDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~-------------------~~~~~~~~~~l~   78 (292)
                      ..|++++++ |.|+       +|+|.++++.   |+..|+   +++..+                   ..|++.+.++++
T Consensus        17 ~kl~~~~Vl-viG~-------GglGs~ia~~---La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~   85 (202)
T TIGR02356        17 QRLLNSHVL-IIGA-------GGLGSPAALY---LAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLR   85 (202)
T ss_pred             HHhcCCCEE-EECC-------CHHHHHHHHH---HHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHH
Confidence            457788899 8998       7999999555   445553   444333                   357888889999


Q ss_pred             hhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+|..++..+..++.+ +.+.++       +...|++|.+..
T Consensus        86 ~~np~v~i~~~~~~i~~-~~~~~~-------~~~~D~Vi~~~d  120 (202)
T TIGR02356        86 ELNSDIQVTALKERVTA-ENLELL-------INNVDLVLDCTD  120 (202)
T ss_pred             HhCCCCEEEEehhcCCH-HHHHHH-------HhCCCEEEECCC
Confidence            98888888887777754 333222       235799988754

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.00  E-value=0.027  Score=50.28  Aligned_cols=82  Identities=10%  Similarity=0.128  Sum_probs=57.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC---------------------HHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC---------------------WDKANDAISK   76 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~---------------------~~~~~~~~~~   76 (292)
                      ..|++++++ |.|+       +|+|..+   +..|+..|+   .|+.++                     ..|++.+.++
T Consensus        20 ~~L~~~~Vl-IiG~-------GglGs~v---a~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~   88 (338)
T PRK12475         20 RKIREKHVL-IVGA-------GALGAAN---AEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEH   88 (338)
T ss_pred             HhhcCCcEE-EECC-------CHHHHHH---HHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHH
Confidence            457888998 9998       7999999   455555553   333343                     2377888899


Q ss_pred             HHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          77 ILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        77 l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +++.+|..++..+..|++. +.++++       ....|++|.+..
T Consensus        89 l~~inp~v~i~~~~~~~~~-~~~~~~-------~~~~DlVid~~D  125 (338)
T PRK12475         89 LRKINSEVEIVPVVTDVTV-EELEEL-------VKEVDLIIDATD  125 (338)
T ss_pred             HHHHCCCcEEEEEeccCCH-HHHHHH-------hcCCCEEEEcCC
Confidence            9999888899999888863 334333       235788888654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.96  E-value=0.023  Score=49.46  Aligned_cols=80  Identities=11%  Similarity=-0.027  Sum_probs=50.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +++|++++ |-|+       +|.|++++..+.+++...+.|+.|+.++++++++++...   ..+.  .  +...++.. 
T Consensus       122 ~~~~k~vl-vlGa-------GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~---~~~~--~--~~~~~~~~-  185 (282)
T TIGR01809       122 PLAGFRGL-VIGA-------GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV---GVIT--R--LEGDSGGL-  185 (282)
T ss_pred             ccCCceEE-EEcC-------cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc---Ccce--e--ccchhhhh-
Confidence            46788898 8888       799999966555444444566679999999988876432   1111  1  11111211 


Q ss_pred             HHHHHHHhCCCccEEEEccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~  123 (292)
                            ......|+|||+....
T Consensus       186 ------~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       186 ------AIEKAAEVLVSTVPAD  201 (282)
T ss_pred             ------hcccCCCEEEECCCCC
Confidence                  1124589999987664

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.93  E-value=0.033  Score=46.80  Aligned_cols=85  Identities=11%  Similarity=0.096  Sum_probs=57.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE----------c---------CHHHHHHHHHHHHhhC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ----------N---------CWDKANDAISKILTEK   81 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~----------r---------~~~~~~~~~~~l~~~~   81 (292)
                      ..|.+++++ |.|+       +|+|.++++.+...+-...+++.          |         ...|++.+.+++++.+
T Consensus        17 ~~L~~~~Vl-ivG~-------GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n   88 (228)
T cd00757          17 EKLKNARVL-VVGA-------GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN   88 (228)
T ss_pred             HHHhCCcEE-EECC-------CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence            346778888 9998       79999995554433322233331          1         1457888899999998


Q ss_pred             CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        82 ~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      |..++..+..+++. +.+.+++       ...|++|.+..
T Consensus        89 p~~~i~~~~~~i~~-~~~~~~~-------~~~DvVi~~~d  120 (228)
T cd00757          89 PDVEIEAYNERLDA-ENAEELI-------AGYDLVLDCTD  120 (228)
T ss_pred             CCCEEEEecceeCH-HHHHHHH-------hCCCEEEEcCC
Confidence            88888888877743 3333332       35899998766

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.79  E-value=0.045  Score=41.91  Aligned_cols=81  Identities=10%  Similarity=0.098  Sum_probs=56.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCCCCc
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKPSAQ   85 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~~~~   85 (292)
                      .++++ |-|+       +|+|.++++.+...+-...+++..+                   ..|++.+.+.+.+.+|..+
T Consensus         2 ~~~v~-iiG~-------G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~   73 (135)
T PF00899_consen    2 NKRVL-IIGA-------GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVE   73 (135)
T ss_dssp             T-EEE-EEST-------SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSE
T ss_pred             CCEEE-EECc-------CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCcee
Confidence            35677 8898       7999999666554433334454321                   4578889999999999999


Q ss_pred             eEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          86 CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        86 ~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +..+..+++ .+...+++       ...|++|.+..
T Consensus        74 v~~~~~~~~-~~~~~~~~-------~~~d~vi~~~d  101 (135)
T PF00899_consen   74 VEAIPEKID-EENIEELL-------KDYDIVIDCVD  101 (135)
T ss_dssp             EEEEESHCS-HHHHHHHH-------HTSSEEEEESS
T ss_pred             eeeeecccc-cccccccc-------cCCCEEEEecC
Confidence            999999983 34444444       24699998754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=95.71  E-value=0.18  Score=43.95  Aligned_cols=78  Identities=6%  Similarity=0.013  Sum_probs=46.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +++|.++++.+..   .|..|+  .++.++.+.+ .++     +...   .+|..+.+..+.
T Consensus       144 ~g~~vl-I~g~~------~~~g~~~~~~a~~---~g~~v~~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~  204 (325)
T cd08253         144 AGETVL-VHGGS------GAVGHAAVQLARW---AGARVIATASSAEGAELV-RQA-----GADA---VFNYRAEDLADR  204 (325)
T ss_pred             CCCEEE-EEcCC------chHHHHHHHHHHH---cCCEEEEEeCCHHHHHHH-HHc-----CCCE---EEeCCCcCHHHH
Confidence            478888 99999      9999999665544   455555  3666554443 222     2221   245555444444


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+...  ...+|++++++|.
T Consensus       205 ~~~~~~--~~~~d~vi~~~~~  223 (325)
T cd08253         205 ILAATA--GQGVDVIIEVLAN  223 (325)
T ss_pred             HHHHcC--CCceEEEEECCch
Confidence            433221  1369999999873

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=95.61  E-value=0.078  Score=45.86  Aligned_cols=105  Identities=13%  Similarity=0.041  Sum_probs=69.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.|++ |++|+      ++.|......++   ..|++|++  .+.+|..=+.+++-    -+.+.    |-...    +
T Consensus       150 ~Getvv-VSaAa------GaVGsvvgQiAK---lkG~rVVGiaGg~eK~~~l~~~lG----fD~~i----dyk~~----d  207 (340)
T COG2130         150 AGETVV-VSAAA------GAVGSVVGQIAK---LKGCRVVGIAGGAEKCDFLTEELG----FDAGI----DYKAE----D  207 (340)
T ss_pred             CCCEEE-EEecc------cccchHHHHHHH---hhCCeEEEecCCHHHHHHHHHhcC----Cceee----ecCcc----c
Confidence            489999 99999      999988865544   56777775  66777655554441    11222    22222    5


Q ss_pred             HHHHHHHhCC-CccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         102 FAEEYQKKFR-SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       102 ~~~~~~~~~~-~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.+.+++..+ .||+.+-|.|-.                        +..+.+++|+..    +||+.++-++++...
T Consensus       208 ~~~~L~~a~P~GIDvyfeNVGg~------------------------v~DAv~~~ln~~----aRi~~CG~IS~YN~~  257 (340)
T COG2130         208 FAQALKEACPKGIDVYFENVGGE------------------------VLDAVLPLLNLF----ARIPVCGAISQYNAP  257 (340)
T ss_pred             HHHHHHHHCCCCeEEEEEcCCch------------------------HHHHHHHhhccc----cceeeeeehhhcCCC
Confidence            5555655555 699999999842                        345666777643    899999988877543

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=95.58  E-value=0.25  Score=43.46  Aligned_cols=78  Identities=18%  Similarity=0.190  Sum_probs=47.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +++|.++++.+.   ..|..++  .++.++.+.+ .+   .  +..   ...|..+.+..+.
T Consensus       166 ~~~~vl-I~g~~------~~iG~~~~~~~~---~~g~~v~~~~~~~~~~~~~-~~---~--~~~---~~~~~~~~~~~~~  226 (342)
T cd08266         166 PGETVL-VHGAG------SGVGSAAIQIAK---LFGATVIATAGSEDKLERA-KE---L--GAD---YVIDYRKEDFVRE  226 (342)
T ss_pred             CCCEEE-EECCC------chHHHHHHHHHH---HcCCEEEEEeCCHHHHHHH-HH---c--CCC---eEEecCChHHHHH
Confidence            467888 99999      999999966544   4455554  4666554433 21   1  221   1246666555555


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+....  ..+|++++++|.
T Consensus       227 ~~~~~~~--~~~d~~i~~~g~  245 (342)
T cd08266         227 VRELTGK--RGVDVVVEHVGA  245 (342)
T ss_pred             HHHHhCC--CCCcEEEECCcH
Confidence            5443322  369999999883

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.51  E-value=0.079  Score=45.76  Aligned_cols=73  Identities=10%  Similarity=0.117  Sum_probs=47.4

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .++|+++ |+|+       +|+|++++..   +...|..|  +.|+.+++++..+++...  + .+.....|     +  
T Consensus       115 ~~~k~vl-iiGa-------Gg~g~aia~~---L~~~g~~v~v~~R~~~~~~~la~~~~~~--~-~~~~~~~~-----~--  173 (270)
T TIGR00507       115 RPNQRVL-IIGA-------GGAARAVALP---LLKADCNVIIANRTVSKAEELAERFQRY--G-EIQAFSMD-----E--  173 (270)
T ss_pred             ccCCEEE-EEcC-------cHHHHHHHHH---HHHCCCEEEEEeCCHHHHHHHHHHHhhc--C-ceEEechh-----h--
Confidence            4678888 9998       7999999555   44555444  458888888888877542  1 22222211     1  


Q ss_pred             HHHHHHHHhCCCccEEEEccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                       .      .....|+||++.+..
T Consensus       174 -~------~~~~~DivInatp~g  189 (270)
T TIGR00507       174 -L------PLHRVDLIINATSAG  189 (270)
T ss_pred             -h------cccCccEEEECCCCC
Confidence             0      123589999998864

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=95.48  E-value=0.14  Score=45.53  Aligned_cols=77  Identities=13%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      |++++ |+||+      +|+|......+..++. ..+++..+.++.+ .+.++     +....   .|..+.+    +.+
T Consensus       143 g~~VL-V~gaa------GgVG~~aiQlAk~~G~-~~v~~~~s~~k~~-~~~~l-----GAd~v---i~y~~~~----~~~  201 (326)
T COG0604         143 GETVL-VHGAA------GGVGSAAIQLAKALGA-TVVAVVSSSEKLE-LLKEL-----GADHV---INYREED----FVE  201 (326)
T ss_pred             CCEEE-EecCC------chHHHHHHHHHHHcCC-cEEEEecCHHHHH-HHHhc-----CCCEE---EcCCccc----HHH
Confidence            88999 99999      9999999777665533 2333345555555 44433     22221   1222322    444


Q ss_pred             HHHHhCC--CccEEEEcccc
Q psy4251         105 EYQKKFR--SLNILVLNAGV  122 (292)
Q Consensus       105 ~~~~~~~--~id~lI~nAg~  122 (292)
                      ++++..+  .+|+++...|.
T Consensus       202 ~v~~~t~g~gvDvv~D~vG~  221 (326)
T COG0604         202 QVRELTGGKGVDVVLDTVGG  221 (326)
T ss_pred             HHHHHcCCCCceEEEECCCH
Confidence            5544333  59999998884

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.44  E-value=0.052  Score=49.30  Aligned_cols=84  Identities=13%  Similarity=0.119  Sum_probs=56.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKP   82 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~   82 (292)
                      .+.+++++ |.|+       +|+|..++..+...+-...+++.++                   ..|++.+.+++++.+|
T Consensus       132 ~l~~~~Vl-vvG~-------GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np  203 (376)
T PRK08762        132 RLLEARVL-LIGA-------GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP  203 (376)
T ss_pred             HHhcCcEE-EECC-------CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC
Confidence            46788888 7788       7999999555444433334444444                   4578888889988888


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      ..++..+...+++ +.+.+++       ...|+||.+..
T Consensus       204 ~v~v~~~~~~~~~-~~~~~~~-------~~~D~Vv~~~d  234 (376)
T PRK08762        204 DVQVEAVQERVTS-DNVEALL-------QDVDVVVDGAD  234 (376)
T ss_pred             CCEEEEEeccCCh-HHHHHHH-------hCCCEEEECCC
Confidence            7777777766653 2333322       24799998765

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.42  E-value=0.24  Score=46.61  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=62.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh---
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL---   96 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~---   96 (292)
                      ...|.+++ |.|+       +.+|...+..+..+   |+.|+  .++.++.+.+.+ +     +.+..  ..|..+.   
T Consensus       162 ~~pg~kVl-ViGa-------G~iGL~Ai~~Ak~l---GA~V~a~D~~~~rle~aes-l-----GA~~v--~i~~~e~~~~  222 (509)
T PRK09424        162 KVPPAKVL-VIGA-------GVAGLAAIGAAGSL---GAIVRAFDTRPEVAEQVES-M-----GAEFL--ELDFEEEGGS  222 (509)
T ss_pred             CcCCCEEE-EECC-------cHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHH-c-----CCeEE--Eecccccccc
Confidence            34588899 9999       79999996665544   44444  467766654432 3     33322  2232221   


Q ss_pred             ----------HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEE
Q psy4251          97 ----------KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARV  166 (292)
Q Consensus        97 ----------~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~i  166 (292)
                                +..+...+.+.+..+..|++|.++|..+...                 +..+++..+..|+  +.  ++|
T Consensus       223 ~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~a-----------------P~lit~~~v~~mk--pG--gvI  281 (509)
T PRK09424        223 GDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPA-----------------PKLITAEMVASMK--PG--SVI  281 (509)
T ss_pred             ccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccC-----------------cchHHHHHHHhcC--CC--CEE
Confidence                      1111222222222346999999999753211                 1223455566665  34  899


Q ss_pred             EEEcCc
Q psy4251         167 VVVSSE  172 (292)
Q Consensus       167 V~vsS~  172 (292)
                      |.++..
T Consensus       282 Vdvg~~  287 (509)
T PRK09424        282 VDLAAE  287 (509)
T ss_pred             EEEccC
Confidence            999874

>PRK05086 malate dehydrogenase; Provisional

Probab=95.36  E-value=0.039  Score=48.75  Aligned_cols=116  Identities=9%  Similarity=0.003  Sum_probs=55.1

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .++ |.||+      +++|.+++..+......+..++  .++. ..+...-++.+.  .......-++-.   ++   .+
T Consensus         2 KI~-IIGAs------G~VG~aia~~l~~~~~~~~el~L~d~~~-~~~g~alDl~~~--~~~~~i~~~~~~---d~---~~   65 (312)
T PRK05086          2 KVA-VLGAA------GGIGQALALLLKTQLPAGSELSLYDIAP-VTPGVAVDLSHI--PTAVKIKGFSGE---DP---TP   65 (312)
T ss_pred             EEE-EECCC------CHHHHHHHHHHHcCCCCccEEEEEecCC-CCcceehhhhcC--CCCceEEEeCCC---CH---HH
Confidence            466 89999      9999999665443223344443  3442 221111122221  101111111111   11   11


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      .    ....|+||.++|....+.    +.....+..|.-..    +.+.+.|.+..+  .++|.+.|.
T Consensus        66 ~----l~~~DiVIitaG~~~~~~----~~R~dll~~N~~i~----~~ii~~i~~~~~--~~ivivvsN  119 (312)
T PRK05086         66 A----LEGADVVLISAGVARKPG----MDRSDLFNVNAGIV----KNLVEKVAKTCP--KACIGIITN  119 (312)
T ss_pred             H----cCCCCEEEEcCCCCCCCC----CCHHHHHHHHHHHH----HHHHHHHHHhCC--CeEEEEccC
Confidence            1    245899999999864322    12344566665444    444445544443  444444443

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.32  E-value=0.086  Score=44.86  Aligned_cols=85  Identities=8%  Similarity=0.036  Sum_probs=56.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEK   81 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~   81 (292)
                      ..|+.++++ |.|+       +|+|..+++.+...+-...+|+..+                   ..|++.+++++++.+
T Consensus        28 ~~L~~~~Vl-iiG~-------GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln   99 (245)
T PRK05690         28 EKLKAARVL-VVGL-------GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN   99 (245)
T ss_pred             HHhcCCeEE-EECC-------CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC
Confidence            457888999 8898       7999999555433322223343221                   357888889999998


Q ss_pred             CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        82 ~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      |..++..+...++. +.+.++       +...|++|.+..
T Consensus       100 p~v~i~~~~~~i~~-~~~~~~-------~~~~DiVi~~~D  131 (245)
T PRK05690        100 PHIAIETINARLDD-DELAAL-------IAGHDLVLDCTD  131 (245)
T ss_pred             CCCEEEEEeccCCH-HHHHHH-------HhcCCEEEecCC
Confidence            88888888877753 233322       235799998764

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.31  E-value=0.07  Score=45.24  Aligned_cols=85  Identities=11%  Similarity=0.041  Sum_probs=55.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEK   81 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~   81 (292)
                      ..|++.+++ |.|+       +|+|..++..+...+-...+++..+                   ..|++.+.+++++.+
T Consensus        20 ~~L~~~~Vl-vvG~-------GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in   91 (240)
T TIGR02355        20 EALKASRVL-IVGL-------GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN   91 (240)
T ss_pred             HHHhCCcEE-EECc-------CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC
Confidence            457788888 9999       7999999665444432223343222                   347777888888888


Q ss_pred             CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        82 ~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      |..++..+...++. +.+.++       +...|++|.+..
T Consensus        92 p~v~i~~~~~~i~~-~~~~~~-------~~~~DlVvd~~D  123 (240)
T TIGR02355        92 PHIAINPINAKLDD-AELAAL-------IAEHDIVVDCTD  123 (240)
T ss_pred             CCcEEEEEeccCCH-HHHHHH-------hhcCCEEEEcCC
Confidence            88788877666643 233333       235788888655

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.08  E-value=0.12  Score=45.16  Aligned_cols=84  Identities=18%  Similarity=0.149  Sum_probs=47.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC---HHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC---WDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ |-|+       +|-+++++..+..+......|+.|+   .++++++++++....+ ..+.+.  ++   +
T Consensus       120 ~~~~~k~vl-vlGa-------GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~-~~~~~~--~~---~  185 (288)
T PRK12749        120 FDIKGKTMV-LLGA-------GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTD-CVVTVT--DL---A  185 (288)
T ss_pred             CCcCCCEEE-EECC-------cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccC-ceEEEe--ch---h
Confidence            456889998 8998       6779998444333333345566688   4578887777754321 112221  22   1


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +...+.    +...+.|+|||+-.+
T Consensus       186 ~~~~l~----~~~~~aDivINaTp~  206 (288)
T PRK12749        186 DQQAFA----EALASADILTNGTKV  206 (288)
T ss_pred             hhhhhh----hhcccCCEEEECCCC
Confidence            111111    122468999997644

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.06  E-value=0.046  Score=50.15  Aligned_cols=78  Identities=13%  Similarity=0.092  Sum_probs=49.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .++.|++++ |.|+       +|+|..+++.+...+.....|+.|+.++++++.+++.    ..  ..+     ..++. 
T Consensus       177 ~~l~~kkvl-viGa-------G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~----~~--~~~-----~~~~l-  236 (414)
T PRK13940        177 DNISSKNVL-IIGA-------GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR----NA--SAH-----YLSEL-  236 (414)
T ss_pred             cCccCCEEE-EEcC-------cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc----CC--eEe-----cHHHH-
Confidence            357899999 9999       7999999666544333335555699888877776652    11  111     12222 


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG  124 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~  124 (292)
                            .+....-|+||++.+...
T Consensus       237 ------~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        237 ------PQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             ------HHHhccCCEEEECcCCCC
Confidence                  222345799999988643

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.02  E-value=0.12  Score=46.58  Aligned_cols=84  Identities=12%  Similarity=0.030  Sum_probs=56.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEK   81 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~   81 (292)
                      ..|++.+++ |.|+       +|+|..+++.+...+-...+++..+                   ..|++.++++|++.+
T Consensus        24 ~~L~~~~Vl-ivG~-------GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n   95 (355)
T PRK05597         24 QSLFDAKVA-VIGA-------GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN   95 (355)
T ss_pred             HHHhCCeEE-EECC-------CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence            457788899 8999       7999999555443322234444332                   368889999999999


Q ss_pred             CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        82 ~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      |..++..+..+++.. ...+++       ...|+||.+.
T Consensus        96 p~v~v~~~~~~i~~~-~~~~~~-------~~~DvVvd~~  126 (355)
T PRK05597         96 PDVKVTVSVRRLTWS-NALDEL-------RDADVILDGS  126 (355)
T ss_pred             CCcEEEEEEeecCHH-HHHHHH-------hCCCEEEECC
Confidence            988888887777642 222222       2357777654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.95  E-value=0.13  Score=39.65  Aligned_cols=75  Identities=13%  Similarity=0.139  Sum_probs=50.9

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC-------------------HHHHHHHHHHHHhhCCCCc
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC-------------------WDKANDAISKILTEKPSAQ   85 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~-------------------~~~~~~~~~~l~~~~~~~~   85 (292)
                      ++ |.|+       +|+|.++   +..|+..|+   .++..+                   ..|++.+++++++.+|..+
T Consensus         2 Vl-iiG~-------GglGs~i---a~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~   70 (143)
T cd01483           2 VL-LVGL-------GGLGSEI---ALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVN   70 (143)
T ss_pred             EE-EECC-------CHHHHHH---HHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcE
Confidence            45 7888       7999999   555555554   333211                   3577888888988888888


Q ss_pred             eEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          86 CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        86 ~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +..+..++.+...        ...+.+.|++|.+..
T Consensus        71 i~~~~~~~~~~~~--------~~~~~~~diVi~~~d   98 (143)
T cd01483          71 VTAVPEGISEDNL--------DDFLDGVDLVIDAID   98 (143)
T ss_pred             EEEEeeecChhhH--------HHHhcCCCEEEECCC
Confidence            8888877765432        122356899998765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd08293 PTGR2 Prostaglandin reductase

Probab=94.87  E-value=0.26  Score=43.76  Aligned_cols=76  Identities=11%  Similarity=0.047  Sum_probs=43.5

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      |.+++ |+|++      +|+|..++..+..   .|+ .|+  .++.++.+.+.+++     +....   .|-.+ ++..+
T Consensus       155 ~~~Vl-I~ga~------g~vG~~aiqlAk~---~G~~~Vi~~~~s~~~~~~~~~~l-----Ga~~v---i~~~~-~~~~~  215 (345)
T cd08293         155 NQTMV-VSGAA------GACGSLAGQIGRL---LGCSRVVGICGSDEKCQLLKSEL-----GFDAA---INYKT-DNVAE  215 (345)
T ss_pred             CCEEE-EECCC------cHHHHHHHHHHHH---cCCCEEEEEcCCHHHHHHHHHhc-----CCcEE---EECCC-CCHHH
Confidence            37888 99999      9999999665553   354 444  36666655544433     22221   12222 22223


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      .+.++..  +.+|+++.+.|
T Consensus       216 ~i~~~~~--~gvd~vid~~g  233 (345)
T cd08293         216 RLRELCP--EGVDVYFDNVG  233 (345)
T ss_pred             HHHHHCC--CCceEEEECCC
Confidence            3333321  36999999877

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.83  E-value=0.16  Score=45.38  Aligned_cols=82  Identities=11%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC---------------------HHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC---------------------WDKANDAISK   76 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~---------------------~~~~~~~~~~   76 (292)
                      ..|..++++ |.|+       +|+|..+|   ..|+..|+   .++..+                     ..|++.+.+.
T Consensus        20 ~~L~~~~Vl-VvG~-------GglGs~va---~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~   88 (339)
T PRK07688         20 QKLREKHVL-IIGA-------GALGTANA---EMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKR   88 (339)
T ss_pred             HHhcCCcEE-EECC-------CHHHHHHH---HHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHH
Confidence            457788888 9999       79999994   44555554   333333                     1466777788


Q ss_pred             HHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          77 ILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        77 l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +++..|..++..+..|++. +.+.++       +...|++|.+..
T Consensus        89 l~~inp~v~v~~~~~~~~~-~~~~~~-------~~~~DlVid~~D  125 (339)
T PRK07688         89 LEEINSDVRVEAIVQDVTA-EELEEL-------VTGVDLIIDATD  125 (339)
T ss_pred             HHHHCCCcEEEEEeccCCH-HHHHHH-------HcCCCEEEEcCC
Confidence            8888887888888888863 333333       234688888643

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=94.69  E-value=0.055  Score=48.06  Aligned_cols=55  Identities=18%  Similarity=0.108  Sum_probs=32.9

Q ss_pred             CCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         111 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       111 ~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      ...|+||++||......    +.-+..+..|+    .+++.+.+.+.+..++.+.++++|...
T Consensus        77 ~~aDiVI~tAG~~~~~~----~~R~~l~~~N~----~i~~~i~~~i~~~~~~~~iiivvsNPv  131 (325)
T cd01336          77 KDVDVAILVGAMPRKEG----MERKDLLKANV----KIFKEQGEALDKYAKKNVKVLVVGNPA  131 (325)
T ss_pred             CCCCEEEEeCCcCCCCC----CCHHHHHHHHH----HHHHHHHHHHHHhCCCCeEEEEecCcH
Confidence            46899999999864321    12244555554    455666666655521127888888753

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.68  E-value=0.17  Score=41.62  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC------------------HHHHHHHHHHHHh
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC------------------WDKANDAISKILT   79 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~------------------~~~~~~~~~~l~~   79 (292)
                      ..|..++++ |.|+       +|+|..+   +..|+..|+   +++..+                  ..|.+.+.+.+.+
T Consensus        17 ~~L~~~~V~-IvG~-------GglGs~i---a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~   85 (200)
T TIGR02354        17 QKLEQATVA-ICGL-------GGLGSNV---AINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISE   85 (200)
T ss_pred             HHHhCCcEE-EECc-------CHHHHHH---HHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHH
Confidence            446778888 9999       7999999   444556664   222222                  2456666777777


Q ss_pred             hCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEc
Q psy4251          80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLN  119 (292)
Q Consensus        80 ~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~n  119 (292)
                      ..|..++..+..+++. +.+.++       +...|+||.+
T Consensus        86 inp~~~i~~~~~~i~~-~~~~~~-------~~~~DlVi~a  117 (200)
T TIGR02354        86 INPYTEIEAYDEKITE-ENIDKF-------FKDADIVCEA  117 (200)
T ss_pred             HCCCCEEEEeeeeCCH-hHHHHH-------hcCCCEEEEC
Confidence            7777777777777753 322222       2457888876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=94.62  E-value=0.15  Score=44.93  Aligned_cols=78  Identities=13%  Similarity=0.082  Sum_probs=51.0

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCCCCceEE
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKPSAQCIA   88 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~   88 (292)
                      ++ |.|+       +|+|-++++.+...+-...+|+..+                   ..|++.+++.+++..|..++..
T Consensus         2 Vl-IVGa-------GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~   73 (312)
T cd01489           2 VL-VVGA-------GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVA   73 (312)
T ss_pred             EE-EECC-------CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEE
Confidence            45 8888       7999999666443433334443221                   4678888888988888888888


Q ss_pred             EEccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          89 MELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        89 ~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      +..++++.....++       +...|+||.+.
T Consensus        74 ~~~~i~~~~~~~~f-------~~~~DvVv~a~   98 (312)
T cd01489          74 YHANIKDPDFNVEF-------FKQFDLVFNAL   98 (312)
T ss_pred             EeccCCCccchHHH-------HhcCCEEEECC
Confidence            88888764222222       23468877754

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.61  E-value=0.45  Score=44.79  Aligned_cols=115  Identities=11%  Similarity=0.059  Sum_probs=63.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCC------
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLC------   94 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls------   94 (292)
                      ....+.+++ |.|+       +.+|...+..+..++.. ..++.++.++.+.+.+ +     +  ..++..|..      
T Consensus       160 g~vp~akVl-ViGa-------G~iGl~Aa~~ak~lGA~-V~v~d~~~~rle~a~~-l-----G--a~~v~v~~~e~g~~~  222 (511)
T TIGR00561       160 GKVPPAKVL-VIGA-------GVAGLAAIGAANSLGAI-VRAFDTRPEVKEQVQS-M-----G--AEFLELDFKEEGGSG  222 (511)
T ss_pred             CCCCCCEEE-EECC-------CHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH-c-----C--CeEEecccccccccc
Confidence            344567888 8898       78999996655544322 3333466666443332 2     2  233444432      


Q ss_pred             -------ChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEE
Q psy4251          95 -------RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVV  167 (292)
Q Consensus        95 -------~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV  167 (292)
                             +.+..+...+.+.+.....|++|+++-+.+...                 +.++++..+..|+.  +  +.||
T Consensus       223 ~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~a-----------------P~Lit~emv~~MKp--G--svIV  281 (511)
T TIGR00561       223 DGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPA-----------------PKLITEEMVDSMKA--G--SVIV  281 (511)
T ss_pred             ccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCC-----------------CeeehHHHHhhCCC--C--CEEE
Confidence                   123344444445555567999999995543111                 12234444555653  3  7888


Q ss_pred             EEcCcc
Q psy4251         168 VVSSES  173 (292)
Q Consensus       168 ~vsS~~  173 (292)
                      -+++..
T Consensus       282 DlA~d~  287 (511)
T TIGR00561       282 DLAAEQ  287 (511)
T ss_pred             EeeeCC
Confidence            888763

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK08223 hypothetical protein; Validated

Probab=94.59  E-value=0.17  Score=43.83  Aligned_cols=81  Identities=11%  Similarity=0.022  Sum_probs=54.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC---cEEEEcC-------------------HHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS---KLFYQNC-------------------WDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g---~~v~~r~-------------------~~~~~~~~~~l~   78 (292)
                      ..|++.+++ |.|+       +|+|-.++.   .|+..|   ..++..|                   ..|++.++++++
T Consensus        23 ~kL~~s~Vl-IvG~-------GGLGs~va~---~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~   91 (287)
T PRK08223         23 QRLRNSRVA-IAGL-------GGVGGIHLL---TLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVR   91 (287)
T ss_pred             HHHhcCCEE-EECC-------CHHHHHHHH---HHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHH
Confidence            447788888 9999       799999955   455554   3333221                   357788888888


Q ss_pred             hhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      +.+|..++..+...++.. .+.+++       ...|+||.+.
T Consensus        92 ~iNP~v~V~~~~~~l~~~-n~~~ll-------~~~DlVvD~~  125 (287)
T PRK08223         92 DINPELEIRAFPEGIGKE-NADAFL-------DGVDVYVDGL  125 (287)
T ss_pred             HHCCCCEEEEEecccCcc-CHHHHH-------hCCCEEEECC
Confidence            888888888888777643 333332       2468887543

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=94.58  E-value=0.25  Score=43.45  Aligned_cols=115  Identities=10%  Similarity=0.015  Sum_probs=66.3

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC----cEEEEcCHHHHHHHHHHHHhhCC--CCceEEEEccCCChHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLFYQNCWDKANDAISKILTEKP--SAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~  100 (292)
                      ++. |.|+       +++|..+|..   ++..|    ..++.++.++++....++.+...  ........   .+.+.  
T Consensus         2 kI~-IIGa-------G~vG~~~a~~---l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~~--   65 (306)
T cd05291           2 KVV-IIGA-------GHVGSSFAYS---LVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYSD--   65 (306)
T ss_pred             EEE-EECC-------CHHHHHHHHH---HHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHHH--
Confidence            456 7787       7999999554   54555    33445888888888888865431  11222221   22221  


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                           +    ..-|++|+++|....+.    +.....++.|.    -+++...+.+.+..+ .+.|+++|.....
T Consensus        66 -----l----~~aDIVIitag~~~~~g----~~R~dll~~N~----~i~~~~~~~i~~~~~-~~~vivvsNP~d~  122 (306)
T cd05291          66 -----C----KDADIVVITAGAPQKPG----ETRLDLLEKNA----KIMKSIVPKIKASGF-DGIFLVASNPVDV  122 (306)
T ss_pred             -----h----CCCCEEEEccCCCCCCC----CCHHHHHHHHH----HHHHHHHHHHHHhCC-CeEEEEecChHHH
Confidence                 1    35899999999853322    12233444443    445555555554432 2888888876443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.56  E-value=0.2  Score=41.18  Aligned_cols=82  Identities=10%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC---cEEEEcC---------------------HHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS---KLFYQNC---------------------WDKANDAISK   76 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g---~~v~~r~---------------------~~~~~~~~~~   76 (292)
                      ..|+..+++ |.|+       +|+|-++++.   |+..|   .+++..+                     ..|++.+.++
T Consensus        15 ~~L~~s~Vl-viG~-------gglGsevak~---L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~   83 (198)
T cd01485          15 NKLRSAKVL-IIGA-------GALGAEIAKN---LVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEF   83 (198)
T ss_pred             HHHhhCcEE-EECC-------CHHHHHHHHH---HHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHH
Confidence            346677888 8888       6899999554   44554   3343211                     2367777888


Q ss_pred             HHhhCCCCceEEEEccCCC-hHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          77 ILTEKPSAQCIAMELDLCR-LKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        77 l~~~~~~~~~~~~~~Dls~-~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      +++..|..++..+..++.+ .+...++       +...|++|.+.
T Consensus        84 L~~lNp~v~i~~~~~~~~~~~~~~~~~-------~~~~dvVi~~~  121 (198)
T cd01485          84 LQELNPNVKLSIVEEDSLSNDSNIEEY-------LQKFTLVIATE  121 (198)
T ss_pred             HHHHCCCCEEEEEecccccchhhHHHH-------HhCCCEEEECC
Confidence            9888888888888777753 2222333       23578888763

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.55  E-value=0.21  Score=41.44  Aligned_cols=84  Identities=12%  Similarity=0.061  Sum_probs=55.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC------------------HHHHHHHHHHHHhhCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC------------------WDKANDAISKILTEKP   82 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~------------------~~~~~~~~~~l~~~~~   82 (292)
                      ..|+.++++ |.|+       +|+|..+++.+...+-....++..+                  ..|++.+.+++.+..|
T Consensus        24 ~~L~~~~V~-ViG~-------GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp   95 (212)
T PRK08644         24 EKLKKAKVG-IAGA-------GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINP   95 (212)
T ss_pred             HHHhCCCEE-EECc-------CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCC
Confidence            447788888 9998       7999999655443322223343332                  2577888888888888


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      ..++..+..++++ +.+.++       +...|++|.+.
T Consensus        96 ~v~v~~~~~~i~~-~~~~~~-------~~~~DvVI~a~  125 (212)
T PRK08644         96 FVEIEAHNEKIDE-DNIEEL-------FKDCDIVVEAF  125 (212)
T ss_pred             CCEEEEEeeecCH-HHHHHH-------HcCCCEEEECC
Confidence            8888888777765 233222       23579888874

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.50  E-value=0.28  Score=43.61  Aligned_cols=78  Identities=13%  Similarity=0.101  Sum_probs=44.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+|++      +|+|..++..+..   .|+.|+  .++.++.+.+.+++     +... +  .|-.+.++..+
T Consensus       151 ~g~~Vl-I~Ga~------G~vG~~aiqlAk~---~G~~Vi~~~~~~~~~~~~~~~l-----Ga~~-v--i~~~~~~~~~~  212 (338)
T cd08295         151 KGETVF-VSAAS------GAVGQLVGQLAKL---KGCYVVGSAGSDEKVDLLKNKL-----GFDD-A--FNYKEEPDLDA  212 (338)
T ss_pred             CCCEEE-EecCc------cHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHhc-----CCce-e--EEcCCcccHHH
Confidence            478888 99999      9999999666554   455554  46666655444323     2211 1  22222222333


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      .+.+...  +.+|+++.+.|
T Consensus       213 ~i~~~~~--~gvd~v~d~~g  230 (338)
T cd08295         213 ALKRYFP--NGIDIYFDNVG  230 (338)
T ss_pred             HHHHhCC--CCcEEEEECCC
Confidence            3333221  36999999877

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.48  E-value=0.06  Score=49.96  Aligned_cols=76  Identities=13%  Similarity=0.030  Sum_probs=45.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC--HHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC--WDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ |||++       |+|.++   +..|.+.|+.|++.+  ........+++.+.  +  +.+...+  +...+
T Consensus         2 ~~~~k~v~-v~G~g-------~~G~s~---a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~--g--~~~~~~~--~~~~~   64 (447)
T PRK02472          2 EYQNKKVL-VLGLA-------KSGYAA---AKLLHKLGANVTVNDGKPFSENPEAQELLEE--G--IKVICGS--HPLEL   64 (447)
T ss_pred             CcCCCEEE-EEeeC-------HHHHHH---HHHHHHCCCEEEEEcCCCccchhHHHHHHhc--C--CEEEeCC--CCHHH
Confidence            46789998 99995       599999   555778888888633  22233334445433  2  2222211  11111


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                         .    .  ..+|+||.++|+.
T Consensus        65 ---~----~--~~~d~vV~s~gi~   79 (447)
T PRK02472         65 ---L----D--EDFDLMVKNPGIP   79 (447)
T ss_pred             ---h----c--CcCCEEEECCCCC
Confidence               1    1  1489999999985

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.48  E-value=0.11  Score=46.16  Aligned_cols=154  Identities=12%  Similarity=-0.031  Sum_probs=85.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---------EEEEc--CHHHHHHHHHHHHhhC-CC-CceEEEEcc
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---------LFYQN--CWDKANDAISKILTEK-PS-AQCIAMELD   92 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---------~v~~r--~~~~~~~~~~~l~~~~-~~-~~~~~~~~D   92 (292)
                      +++. |+|++      +.+|..+|.   .+...+.         .++..  +.++++..+.++.... +- .++.+ .  
T Consensus         3 ~KV~-IiGa~------G~VG~~~a~---~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-~--   69 (322)
T cd01338           3 VRVA-VTGAA------GQIGYSLLF---RIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI-T--   69 (322)
T ss_pred             eEEE-EECCC------cHHHHHHHH---HHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE-e--
Confidence            4677 99998      899999944   4444332         23333  2333455455554332 10 01111 1  


Q ss_pred             CCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          93 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        93 ls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      -.+           .+....-|++|.+||....+. .+   ....+..|    .-+++.+.+.+.+..++.+.|+++|..
T Consensus        70 ~~~-----------~~~~~daDivvitaG~~~k~g-~t---R~dll~~N----~~i~~~i~~~i~~~~~~~~iiivvsNP  130 (322)
T cd01338          70 DDP-----------NVAFKDADWALLVGAKPRGPG-ME---RADLLKAN----GKIFTAQGKALNDVASRDVKVLVVGNP  130 (322)
T ss_pred             cCc-----------HHHhCCCCEEEEeCCCCCCCC-Cc---HHHHHHHH----HHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence            011           122346799999999853322 22   23344444    445666666666544112888888765


Q ss_pred             ccccccCCCCCCCccccCcCCCC-CChhhhHHHHhHHHHHHHHHHHHhHhc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYS-DFWAMTAYNDTKLCNVLFGEKLATLWY  222 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~sK~a~~~~~~~la~~~~  222 (292)
                      .-.+...-          . ... .++....|+.+++--..|...+++.+.
T Consensus       131 vD~~t~~~----------~-k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lg  170 (322)
T cd01338         131 CNTNALIA----------M-KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAG  170 (322)
T ss_pred             HHHHHHHH----------H-HHcCCCChHheEEehHHHHHHHHHHHHHHhC
Confidence            32222100          0 011 244677899999999999999999985

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.48  E-value=0.71  Score=35.62  Aligned_cols=115  Identities=15%  Similarity=0.070  Sum_probs=66.3

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEEEcCHHHHHHHHHHHHhhCCCC--ceEEEEccCCChHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFYQNCWDKANDAISKILTEKPSA--QCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~~r~~~~~~~~~~~l~~~~~~~--~~~~~~~Dls~~~~v~~~  102 (292)
                      .+. |.|++      +.+|..+|..+... ...  ..++.+++++++..+.++.......  ......   .+.+.    
T Consensus         2 KV~-IiGa~------G~VG~~~a~~l~~~-~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~~----   66 (141)
T PF00056_consen    2 KVA-IIGAA------GNVGSTLALLLAQQ-GLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYEA----   66 (141)
T ss_dssp             EEE-EESTT------SHHHHHHHHHHHHT-TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGGG----
T ss_pred             EEE-EECCC------ChHHHHHHHHHHhC-CCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccccc----
Confidence            355 88998      89999996654444 222  3445688888888888886543212  222222   33333    


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                             ...-|++|.+||....+.+    .....++.|.    .+++.+.+.+.+..+ .+.++.+|..
T Consensus        67 -------~~~aDivvitag~~~~~g~----sR~~ll~~N~----~i~~~~~~~i~~~~p-~~~vivvtNP  120 (141)
T PF00056_consen   67 -------LKDADIVVITAGVPRKPGM----SRLDLLEANA----KIVKEIAKKIAKYAP-DAIVIVVTNP  120 (141)
T ss_dssp             -------GTTESEEEETTSTSSSTTS----SHHHHHHHHH----HHHHHHHHHHHHHST-TSEEEE-SSS
T ss_pred             -------cccccEEEEeccccccccc----cHHHHHHHhH----hHHHHHHHHHHHhCC-ccEEEEeCCc
Confidence                   2357999999998532221    2344445444    445555555554432 1777777664

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.45  E-value=0.14  Score=41.94  Aligned_cols=81  Identities=15%  Similarity=0.227  Sum_probs=53.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC-------------------HHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC-------------------WDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~-------------------~~~~~~~~~~l~   78 (292)
                      +.|++++++ |-|+       +|+|-++++.   |+..|+   +++..+                   ..|++.++++++
T Consensus        17 ~~L~~s~Vl-IiG~-------gglG~evak~---La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~   85 (197)
T cd01492          17 KRLRSARIL-LIGL-------KGLGAEIAKN---LVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLR   85 (197)
T ss_pred             HHHHhCcEE-EEcC-------CHHHHHHHHH---HHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHH
Confidence            446778888 7788       6899999554   555553   343211                   347888889999


Q ss_pred             hhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+|..++..+...+++  ...++       +...|++|.+..
T Consensus        86 ~lNp~v~i~~~~~~~~~--~~~~~-------~~~~dvVi~~~~  119 (197)
T cd01492          86 ALNPRVKVSVDTDDISE--KPEEF-------FSQFDVVVATEL  119 (197)
T ss_pred             HHCCCCEEEEEecCccc--cHHHH-------HhCCCEEEECCC
Confidence            99888888887766652  11222       235799887643

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.38  E-value=0.18  Score=45.55  Aligned_cols=66  Identities=12%  Similarity=0.071  Sum_probs=46.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEK   81 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~   81 (292)
                      ..|.+.+++ |.|+       +|+|..++..+...+-...+++..+                   ..|++.+++++++.+
T Consensus        37 ~~l~~~~Vl-iiG~-------GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n  108 (370)
T PRK05600         37 ERLHNARVL-VIGA-------GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ  108 (370)
T ss_pred             HHhcCCcEE-EECC-------CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence            457788888 9999       7999999555433322223343222                   468888899999998


Q ss_pred             CCCceEEEEccCC
Q psy4251          82 PSAQCIAMELDLC   94 (292)
Q Consensus        82 ~~~~~~~~~~Dls   94 (292)
                      |..++..+...++
T Consensus       109 p~v~i~~~~~~i~  121 (370)
T PRK05600        109 PDIRVNALRERLT  121 (370)
T ss_pred             CCCeeEEeeeecC
Confidence            8878888776665

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.38  E-value=0.24  Score=41.74  Aligned_cols=80  Identities=10%  Similarity=0.090  Sum_probs=51.5

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCCCCceEE
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKPSAQCIA   88 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~   88 (292)
                      ++ |.|+       +|+|-++++.+...+-...+|+..|                   ..|++.+++.+++..|..++..
T Consensus         2 Vl-vvG~-------GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~   73 (234)
T cd01484           2 VL-LVGA-------GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVP   73 (234)
T ss_pred             EE-EECC-------CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEE
Confidence            44 7788       7999999665443332234444322                   4578888888888888888888


Q ss_pred             EEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          89 MELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        89 ~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +..++++.++.   -.++   +...|++|.+..
T Consensus        74 ~~~~i~~~~~~---~~~f---~~~~DvVi~a~D  100 (234)
T cd01484          74 YQNKVGPEQDF---NDTF---FEQFHIIVNALD  100 (234)
T ss_pred             EeccCChhhhc---hHHH---HhCCCEEEECCC
Confidence            88888653321   1122   345798888643

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK08328 hypothetical protein; Provisional

Probab=94.36  E-value=0.24  Score=41.73  Aligned_cols=85  Identities=11%  Similarity=0.010  Sum_probs=48.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------H-HHHHHHHHHHHhh
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------W-DKANDAISKILTE   80 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~-~~~~~~~~~l~~~   80 (292)
                      ..|++++++ |.|+       +|+|.++++.+...+-...+++..+                   . .+.+.+.+++++.
T Consensus        23 ~~L~~~~Vl-IiG~-------GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~   94 (231)
T PRK08328         23 EKLKKAKVA-VVGV-------GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF   94 (231)
T ss_pred             HHHhCCcEE-EECC-------CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh
Confidence            457788888 9999       7999999555443322223344222                   1 2344445566666


Q ss_pred             CCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          81 KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        81 ~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      .|..++..+...++ .+.+.+++       ...|++|.+..
T Consensus        95 np~v~v~~~~~~~~-~~~~~~~l-------~~~D~Vid~~d  127 (231)
T PRK08328         95 NSDIKIETFVGRLS-EENIDEVL-------KGVDVIVDCLD  127 (231)
T ss_pred             CCCCEEEEEeccCC-HHHHHHHH-------hcCCEEEECCC
Confidence            66666666665553 23333322       24577776544

>cd00704 MDH Malate dehydrogenase

Probab=94.32  E-value=0.14  Score=45.38  Aligned_cols=58  Identities=19%  Similarity=0.129  Sum_probs=34.5

Q ss_pred             HhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         108 KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       108 ~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +.....|++|+.||....+.    +.....+..|    .-+++.+.+.+.+..++.+.++++|...
T Consensus        72 ~~~~~aDiVVitAG~~~~~g----~tR~dll~~N----~~i~~~i~~~i~~~~~~~~iiivvsNPv  129 (323)
T cd00704          72 EAFKDVDVAILVGAFPRKPG----MERADLLRKN----AKIFKEQGEALNKVAKPTVKVLVVGNPA  129 (323)
T ss_pred             HHhCCCCEEEEeCCCCCCcC----CcHHHHHHHh----HHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence            33457899999999853322    2233344444    4566777777766521127788777543

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=94.18  E-value=0.13  Score=49.27  Aligned_cols=93  Identities=15%  Similarity=0.115  Sum_probs=58.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC----------------------HHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC----------------------WDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~----------------------~~~~~~~~~~l~   78 (292)
                      ..|++.+++ |.|+       +|+|-.+|+.+...+-..++++..+                      ..|++.+++.|+
T Consensus       334 ekL~~~kVL-IvGa-------GGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk  405 (664)
T TIGR01381       334 ERYSQLKVL-LLGA-------GTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALK  405 (664)
T ss_pred             HHHhcCeEE-EECC-------cHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHH
Confidence            446788888 9999       7999999666554433334444211                      236777888999


Q ss_pred             hhCCCCceEEEEccC-------CC--hHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          79 TEKPSAQCIAMELDL-------CR--LKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dl-------s~--~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+|..++..+...+       +.  .+++.+=++.+.+.....|+|+.+.-
T Consensus       406 ~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tD  457 (664)
T TIGR01381       406 RIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLD  457 (664)
T ss_pred             HHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCC
Confidence            999888888877664       22  12222222333333345688888654

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.15  E-value=0.056  Score=44.49  Aligned_cols=46  Identities=11%  Similarity=-0.008  Sum_probs=33.9

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISK   76 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~   76 (292)
                      ..+++||+++ |.|.       +.+|..+   +..|.+.|+.|++  ++.+++++..++
T Consensus        23 ~~~l~gk~v~-I~G~-------G~vG~~~---A~~L~~~G~~Vvv~D~~~~~~~~~~~~   70 (200)
T cd01075          23 TDSLEGKTVA-VQGL-------GKVGYKL---AEHLLEEGAKLIVADINEEAVARAAEL   70 (200)
T ss_pred             CCCCCCCEEE-EECC-------CHHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence            4678999999 9998       6899999   5556677877765  566665555443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=94.10  E-value=0.39  Score=43.02  Aligned_cols=78  Identities=12%  Similarity=0.067  Sum_probs=44.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+|++      +|+|..++..+..   .|+.|++  ++.++.+.+.+++     +....   .|-.+.++..+
T Consensus       158 ~g~~Vl-V~Gaa------G~vG~~aiqlAk~---~G~~Vi~~~~~~~k~~~~~~~l-----Ga~~v---i~~~~~~~~~~  219 (348)
T PLN03154        158 KGDSVF-VSAAS------GAVGQLVGQLAKL---HGCYVVGSAGSSQKVDLLKNKL-----GFDEA---FNYKEEPDLDA  219 (348)
T ss_pred             CCCEEE-EecCc------cHHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHHhc-----CCCEE---EECCCcccHHH
Confidence            478888 99999      9999999665543   4555553  5666654443333     22221   12222222333


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      .+.+..  .+.+|+++.+.|
T Consensus       220 ~i~~~~--~~gvD~v~d~vG  237 (348)
T PLN03154        220 ALKRYF--PEGIDIYFDNVG  237 (348)
T ss_pred             HHHHHC--CCCcEEEEECCC
Confidence            333322  136999999887

>PRK14968 putative methyltransferase; Provisional

Probab=94.04  E-value=0.86  Score=36.52  Aligned_cols=120  Identities=10%  Similarity=0.058  Sum_probs=61.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCc-eEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQ-CIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~-~~~~~~Dls~~~~v~  100 (292)
                      ++++++ -.|++      .|.  ..    ..++..+..|++  .+++..+.+.+.+.......+ +.++.+|+.+.    
T Consensus        23 ~~~~vL-d~G~G------~G~--~~----~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----   85 (188)
T PRK14968         23 KGDRVL-EVGTG------SGI--VA----IVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----   85 (188)
T ss_pred             CCCEEE-EEccc------cCH--HH----HHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----
Confidence            466777 66654      443  22    222233556654  677777777666654321222 88888887542    


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCC-CCCCCcchhhhhhhhhhHH---HHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAH---FYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~-~~~~~~~~~~~~~vN~~~~---~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                           +.+  .++|+++.|..+.... .....+.+...+..+..+.   -.+++.+.+.|+.  .  |.++++.+
T Consensus        86 -----~~~--~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~--g--G~~~~~~~  149 (188)
T PRK14968         86 -----FRG--DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP--G--GRILLLQS  149 (188)
T ss_pred             -----ccc--cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC--C--eEEEEEEc
Confidence                 111  2689999988765311 1111122222222222222   2345566666653  3  77766544

>PRK09620 hypothetical protein; Provisional

Probab=94.03  E-value=0.052  Score=45.66  Aligned_cols=38  Identities=8%  Similarity=-0.047  Sum_probs=24.1

Q ss_pred             CCCceEEEEcCC-C-------CCCC-C-cccchhhHHHHHHHHhhcCcEEEE
Q psy4251          23 YNGCLAILCTGD-M-------EFYP-R-YTGLKKKDGNLCFDLVQSSKLFYQ   64 (292)
Q Consensus        23 l~g~~~vlItGa-~-------~~~~-~-~~GiG~~~a~~~~~l~~~g~~v~~   64 (292)
                      |+||+++ ||+| |       |++. . ++=+|..+   +.++..+|+.|+.
T Consensus         1 l~gk~vl-ITaG~T~E~iD~VR~itN~SSGfiGs~L---A~~L~~~Ga~V~l   48 (229)
T PRK09620          1 MKGKKVL-ITSGGCLEKWDQVRGHTNMAKGTIGRII---AEELISKGAHVIY   48 (229)
T ss_pred             CCCCEEE-EeCCCccCCcCCeeEecCCCcCHHHHHH---HHHHHHCCCeEEE
Confidence            4789999 8855 2       1122 2 24478888   6666678887763

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.64  E-value=0.87  Score=38.44  Aligned_cols=76  Identities=11%  Similarity=0.038  Sum_probs=42.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      + +|.++++.+..   .|..|+  .++.++.+.+ +++     +...   ..|..+.+....
T Consensus       134 ~~~~vl-i~g~~------~-~G~~~~~~a~~---~g~~v~~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~  193 (271)
T cd05188         134 PGDTVL-VLGAG------G-VGLLAAQLAKA---AGARVIVTDRSDEKLELA-KEL-----GADH---VIDYKEEDLEEE  193 (271)
T ss_pred             CCCEEE-EECCC------H-HHHHHHHHHHH---cCCeEEEEcCCHHHHHHH-HHh-----CCce---eccCCcCCHHHH
Confidence            577888 99997      7 99999666554   345554  3555544332 222     1111   123333333333


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.   ....+.+|++|+++|.
T Consensus       194 ~~---~~~~~~~d~vi~~~~~  211 (271)
T cd05188         194 LR---LTGGGGADVVIDAVGG  211 (271)
T ss_pred             HH---HhcCCCCCEEEECCCC
Confidence            33   2233579999999874

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=93.64  E-value=0.38  Score=41.93  Aligned_cols=76  Identities=14%  Similarity=0.033  Sum_probs=51.1

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCCCCceEE
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKPSAQCIA   88 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~   88 (292)
                      ++ |.|+       +|+|-++++.+...+-...+|+..+                   ..|++.+++.+++..|..++..
T Consensus         2 Vl-VVGa-------GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~   73 (291)
T cd01488           2 IL-VIGA-------GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTP   73 (291)
T ss_pred             EE-EECC-------CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEE
Confidence            45 8888       7999999555443322224443211                   4688888999999988889999


Q ss_pred             EEccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          89 MELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        89 ~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      +..++.+.+  .++       +...|++|.+.
T Consensus        74 ~~~~i~~~~--~~f-------~~~fdvVi~al   96 (291)
T cd01488          74 HFGKIQDKD--EEF-------YRQFNIIICGL   96 (291)
T ss_pred             EecccCchh--HHH-------hcCCCEEEECC
Confidence            888887532  122       34678888854

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=93.64  E-value=0.58  Score=41.23  Aligned_cols=78  Identities=10%  Similarity=0.046  Sum_probs=44.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+|++      +++|..++..+..   .|..|+  .++.++.+.+ .++     +....   .|-.+.+...+
T Consensus       138 ~g~~VL-I~ga~------g~vG~~aiqlAk~---~G~~Vi~~~~s~~~~~~~-~~l-----Ga~~v---i~~~~~~~~~~  198 (325)
T TIGR02825       138 GGETVM-VNAAA------GAVGSVVGQIAKL---KGCKVVGAAGSDEKVAYL-KKL-----GFDVA---FNYKTVKSLEE  198 (325)
T ss_pred             CCCEEE-EeCCc------cHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHH-HHc-----CCCEE---EeccccccHHH
Confidence            477888 99999      9999999666553   455554  4666654443 222     22222   12222223333


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      ..+...  .+.+|+++.+.|.
T Consensus       199 ~~~~~~--~~gvdvv~d~~G~  217 (325)
T TIGR02825       199 TLKKAS--PDGYDCYFDNVGG  217 (325)
T ss_pred             HHHHhC--CCCeEEEEECCCH
Confidence            333332  1369999998773

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK07411 hypothetical protein; Validated

Probab=93.63  E-value=0.28  Score=44.73  Aligned_cols=84  Identities=15%  Similarity=0.070  Sum_probs=54.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEK   81 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~   81 (292)
                      ..|+..+|+ |.|+       +|+|-.+++.+...+-...+++..+                   ..|++.+++++++.+
T Consensus        34 ~~L~~~~Vl-ivG~-------GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n  105 (390)
T PRK07411         34 KRLKAASVL-CIGT-------GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN  105 (390)
T ss_pred             HHHhcCcEE-EECC-------CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence            457788888 9999       7999999554333322223343221                   457888999999999


Q ss_pred             CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        82 ~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      |..++..+...++.. ...+++       ...|+||.+.
T Consensus       106 p~v~v~~~~~~~~~~-~~~~~~-------~~~D~Vvd~~  136 (390)
T PRK07411        106 PYCQVDLYETRLSSE-NALDIL-------APYDVVVDGT  136 (390)
T ss_pred             CCCeEEEEecccCHH-hHHHHH-------hCCCEEEECC
Confidence            988888888777653 222221       2356666654

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.46  E-value=0.44  Score=38.21  Aligned_cols=75  Identities=16%  Similarity=0.147  Sum_probs=48.2

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC------------------HHHHHHHHHHHHhhCCCCce
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC------------------WDKANDAISKILTEKPSAQC   86 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~------------------~~~~~~~~~~l~~~~~~~~~   86 (292)
                      ++ |.|+       +|+|..+++.   |+..|+   +++..+                  ..|++.+.+++++..|..++
T Consensus         2 Vl-ViG~-------GglGs~ia~~---La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i   70 (174)
T cd01487           2 VG-IAGA-------GGLGSNIAVL---LARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKI   70 (174)
T ss_pred             EE-EECc-------CHHHHHHHHH---HHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEE
Confidence            44 7888       7999999555   444443   343332                  24677778888888887788


Q ss_pred             EEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          87 IAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        87 ~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      ..+..+++. +.+.++       +...|++|.+..
T Consensus        71 ~~~~~~~~~-~~~~~~-------l~~~DlVi~~~d   97 (174)
T cd01487          71 EAINIKIDE-NNLEGL-------FGDCDIVVEAFD   97 (174)
T ss_pred             EEEEeecCh-hhHHHH-------hcCCCEEEECCC
Confidence            877777654 222232       235788888733

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG2013|consensus

Probab=93.45  E-value=0.29  Score=44.87  Aligned_cols=71  Identities=13%  Similarity=0.061  Sum_probs=44.9

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC---cEEEEcC-------------------HHHHHHHHHHHHhh
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS---KLFYQNC-------------------WDKANDAISKILTE   80 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g---~~v~~r~-------------------~~~~~~~~~~l~~~   80 (292)
                      +.+..++ |.||       +|||-++   +..|+..|   ++|+..+                   +.++.-+++...+-
T Consensus        10 i~~~riL-vVGa-------GGIGCEL---LKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~F   78 (603)
T KOG2013|consen   10 IKSGRIL-VVGA-------GGIGCEL---LKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQF   78 (603)
T ss_pred             hccCeEE-EEec-------CcccHHH---HHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHh
Confidence            4566788 8999       7999999   66666665   5555322                   34454555555555


Q ss_pred             CCCCceEEEEccCCChHHHHHHHH
Q psy4251          81 KPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        81 ~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .|+.++..++.|+.++..-..+++
T Consensus        79 npn~~l~~yhanI~e~~fnv~ff~  102 (603)
T KOG2013|consen   79 NPNIKLVPYHANIKEPKFNVEFFR  102 (603)
T ss_pred             CCCCceEeccccccCcchHHHHHH
Confidence            566666667777766644444444

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=93.44  E-value=0.15  Score=48.48  Aligned_cols=46  Identities=15%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKI   77 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l   77 (292)
                      .++++|+++ |+|+       +|+|+++   +..|...|+.|+  .|+.+++++..+++
T Consensus       375 ~~~~~k~vl-IlGa-------GGagrAi---a~~L~~~G~~V~i~nR~~e~a~~la~~l  422 (529)
T PLN02520        375 SPLAGKLFV-VIGA-------GGAGKAL---AYGAKEKGARVVIANRTYERAKELADAV  422 (529)
T ss_pred             cCCCCCEEE-EECC-------cHHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence            457899999 9999       7999999   555656665544  48888887776655

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=93.43  E-value=0.21  Score=43.76  Aligned_cols=73  Identities=10%  Similarity=0.048  Sum_probs=49.9

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE--EEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL--FYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~--v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      ..+ |-||+      +=-|.-+   +.++..+|..  +.+||..++..+.++|     +.+...+++++  ++.+++.+ 
T Consensus         8 d~i-iYGAt------Gy~G~lv---ae~l~~~g~~~aLAgRs~~kl~~l~~~L-----G~~~~~~p~~~--p~~~~~~~-   69 (382)
T COG3268           8 DII-IYGAT------GYAGGLV---AEYLAREGLTAALAGRSSAKLDALRASL-----GPEAAVFPLGV--PAALEAMA-   69 (382)
T ss_pred             eEE-EEccc------cchhHHH---HHHHHHcCCchhhccCCHHHHHHHHHhc-----CccccccCCCC--HHHHHHHH-
Confidence            456 99999      5556666   5556666654  4569999999988877     44555566655  44444433 


Q ss_pred             HHHHhCCCccEEEEccccc
Q psy4251         105 EYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~  123 (292)
                            ...++|+||+|.+
T Consensus        70 ------~~~~VVlncvGPy   82 (382)
T COG3268          70 ------SRTQVVLNCVGPY   82 (382)
T ss_pred             ------hcceEEEeccccc
Confidence                  3479999999965

>KOG0023|consensus

Probab=93.42  E-value=0.71  Score=40.43  Aligned_cols=65  Identities=15%  Similarity=0.089  Sum_probs=41.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCC-ChHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLC-RLKSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-~~~~v~~~  102 (292)
                      .|+.+- |+|+       +|||.-..+.+.++ .....++.++..+-+++.+.|-     +...   +|.+ |++.++++
T Consensus       181 pG~~vg-I~Gl-------GGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LG-----Ad~f---v~~~~d~d~~~~~  243 (360)
T KOG0023|consen  181 PGKWVG-IVGL-------GGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLG-----ADVF---VDSTEDPDIMKAI  243 (360)
T ss_pred             CCcEEE-EecC-------cccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcC-----ccee---EEecCCHHHHHHH
Confidence            689999 9999       57999996665544 3334445567667777777663     3322   3555 66666666


Q ss_pred             HHH
Q psy4251         103 AEE  105 (292)
Q Consensus       103 ~~~  105 (292)
                      .+.
T Consensus       244 ~~~  246 (360)
T KOG0023|consen  244 MKT  246 (360)
T ss_pred             HHh
Confidence            444

>KOG0024|consensus

Probab=93.39  E-value=0.61  Score=40.89  Aligned_cols=84  Identities=11%  Similarity=0.048  Sum_probs=54.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |-||       +-||..+...+..++...+.++.-...+++-+.+ +     +.++..-...-++.+.+.+.+
T Consensus       169 ~Gs~vL-V~GA-------GPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~-----Ga~~~~~~~~~~~~~~~~~~v  234 (354)
T KOG0024|consen  169 KGSKVL-VLGA-------GPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F-----GATVTDPSSHKSSPQELAELV  234 (354)
T ss_pred             cCCeEE-EECC-------cHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h-----CCeEEeeccccccHHHHHHHH
Confidence            477888 9999       7999999888777766665555566667655444 4     444444333333455555555


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      +...... .+|+.|.|.|.
T Consensus       235 ~~~~g~~-~~d~~~dCsG~  252 (354)
T KOG0024|consen  235 EKALGKK-QPDVTFDCSGA  252 (354)
T ss_pred             Hhhcccc-CCCeEEEccCc
Confidence            5544322 49999999996

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=93.37  E-value=0.23  Score=43.30  Aligned_cols=58  Identities=16%  Similarity=0.098  Sum_probs=36.8

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC---------------------HHHHHHHHHHHHhhCCCCce
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC---------------------WDKANDAISKILTEKPSAQC   86 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~---------------------~~~~~~~~~~l~~~~~~~~~   86 (292)
                      ++ |.|+       +|+|-.+|+.+...+-..++++..+                     ..|++.+++.|++.+|..++
T Consensus         2 VL-IvGa-------GGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v   73 (307)
T cd01486           2 CL-LLGA-------GTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDA   73 (307)
T ss_pred             EE-EECC-------CHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEE
Confidence            45 8898       7999999666444433223333111                     23677778888888887777


Q ss_pred             EEEEccC
Q psy4251          87 IAMELDL   93 (292)
Q Consensus        87 ~~~~~Dl   93 (292)
                      ..+...+
T Consensus        74 ~~~~~~I   80 (307)
T cd01486          74 TGIVLSI   80 (307)
T ss_pred             EEeeeec
Confidence            7766544

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=93.36  E-value=0.3  Score=39.62  Aligned_cols=82  Identities=10%  Similarity=0.061  Sum_probs=38.7

Q ss_pred             CCCceEEEEcCC-C-------CCCC--CcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEc
Q psy4251          23 YNGCLAILCTGD-M-------EFYP--RYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMEL   91 (292)
Q Consensus        23 l~g~~~vlItGa-~-------~~~~--~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~   91 (292)
                      |+||+++ ||+| |       |++.  -++-.|.++   +.++..+|+.|+. ........          ...+..++ 
T Consensus         1 l~gk~vl-ITaG~T~E~iD~VR~ItN~SSG~~G~~l---A~~~~~~Ga~V~li~g~~~~~~----------p~~~~~i~-   65 (185)
T PF04127_consen    1 LKGKKVL-ITAGPTREPIDPVRFITNRSSGKMGAAL---AEEAARRGAEVTLIHGPSSLPP----------PPGVKVIR-   65 (185)
T ss_dssp             -TT-EEE-EEESB-EEESSSSEEEEES--SHHHHHH---HHHHHHTT-EEEEEE-TTS--------------TTEEEEE-
T ss_pred             CCCCEEE-EECCCccccCCCceEecCCCcCHHHHHH---HHHHHHCCCEEEEEecCccccc----------cccceEEE-
Confidence            5788998 7754 3       1222  235678888   4455566766653 11111100          12344444 


Q ss_pred             cCCChHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          92 DLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        92 Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                       +.+.++..+.+.+.   .+.-|++|++|++.
T Consensus        66 -v~sa~em~~~~~~~---~~~~Di~I~aAAVs   93 (185)
T PF04127_consen   66 -VESAEEMLEAVKEL---LPSADIIIMAAAVS   93 (185)
T ss_dssp             --SSHHHHHHHHHHH---GGGGSEEEE-SB--
T ss_pred             -ecchhhhhhhhccc---cCcceeEEEecchh
Confidence             55555554444444   45559999999986

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=93.33  E-value=0.27  Score=44.83  Aligned_cols=50  Identities=6%  Similarity=0.005  Sum_probs=35.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~   78 (292)
                      .+|++++++ |.|+       +-+|..+|+++.+..-...+|+.|+.++++++++++.
T Consensus       174 ~~L~~~~vl-vIGA-------Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~  223 (414)
T COG0373         174 GSLKDKKVL-VIGA-------GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG  223 (414)
T ss_pred             cccccCeEE-EEcc-------cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC
Confidence            458899999 9998       5688888555443322334455699999999888773

>PRK14851 hypothetical protein; Provisional

Probab=93.30  E-value=0.35  Score=47.28  Aligned_cols=85  Identities=7%  Similarity=-0.016  Sum_probs=57.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEK   81 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~   81 (292)
                      ..|++.+++ |.|.       +|+|-.++..+...+-...+++..|                   ..|.+.+.+.+.+.+
T Consensus        39 ~kL~~~~Vl-IvG~-------GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in  110 (679)
T PRK14851         39 ERLAEAKVA-IPGM-------GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN  110 (679)
T ss_pred             HHHhcCeEE-EECc-------CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC
Confidence            457788899 9998       7999999555444433223343211                   457888889999999


Q ss_pred             CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        82 ~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      |..++..+...++ .+.+.++++       ..|+||.+..
T Consensus       111 P~~~I~~~~~~i~-~~n~~~~l~-------~~DvVid~~D  142 (679)
T PRK14851        111 PFLEITPFPAGIN-ADNMDAFLD-------GVDVVLDGLD  142 (679)
T ss_pred             CCCeEEEEecCCC-hHHHHHHHh-------CCCEEEECCC
Confidence            9889999998886 344445432       4688876543

>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]

Probab=93.25  E-value=0.89  Score=39.20  Aligned_cols=86  Identities=13%  Similarity=0.097  Sum_probs=56.1

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE----cC-----HH----HHHHHHHHHHhhCCCCceEEEEcc
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ----NC-----WD----KANDAISKILTEKPSAQCIAMELD   92 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~----r~-----~~----~~~~~~~~l~~~~~~~~~~~~~~D   92 (292)
                      |.++ |.|++      +|.|++. |..+.++ .|+.-++    |-     +.    -......+..... +--..-+..|
T Consensus        42 KkVL-viGaS------sGyGLa~-RIsaaFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~k-GlyAksingD  111 (398)
T COG3007          42 KKVL-VIGAS------SGYGLAA-RISAAFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQK-GLYAKSINGD  111 (398)
T ss_pred             ceEE-EEecC------CcccHHH-HHHHHhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhc-Cceeeecccc
Confidence            5566 99999      9999987 5456675 4444332    11     00    0111122222221 4455667889


Q ss_pred             CCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          93 LCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        93 ls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      .=+.+--+.+++.|++.++++|.+|..-+
T Consensus       112 aFS~e~k~kvIe~Ik~~~g~vDlvvYSlA  140 (398)
T COG3007         112 AFSDEMKQKVIEAIKQDFGKVDLVVYSLA  140 (398)
T ss_pred             hhhHHHHHHHHHHHHHhhccccEEEEecc
Confidence            88888889999999999999999998743

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.18  E-value=0.69  Score=37.37  Aligned_cols=79  Identities=13%  Similarity=-0.013  Sum_probs=52.3

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ..++.|++++ =-|++      .|+ +++  -+..|+...+.-+-.|.+.++-+.+...+.  .+++.++.+|+++..  
T Consensus        41 ~g~l~g~~V~-DlG~G------TG~-La~--ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~--  106 (198)
T COG2263          41 RGDLEGKTVL-DLGAG------TGI-LAI--GAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR--  106 (198)
T ss_pred             cCCcCCCEEE-EcCCC------cCH-HHH--HHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC--
Confidence            3778999998 77876      555 222  022232232222337888887777777664  679999999998643  


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                                 ++.|.+|.|.-+.
T Consensus       107 -----------~~~dtvimNPPFG  119 (198)
T COG2263         107 -----------GKFDTVIMNPPFG  119 (198)
T ss_pred             -----------CccceEEECCCCc
Confidence                       4788888887544

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=93.17  E-value=0.4  Score=43.82  Aligned_cols=66  Identities=15%  Similarity=0.031  Sum_probs=45.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKP   82 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~   82 (292)
                      .|+..+|+ |.|+       +|+|-.++..+...+-...+|+..+                   ..|++.+++.|++.+|
T Consensus        39 ~L~~~~Vl-viG~-------GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np  110 (392)
T PRK07878         39 RLKNARVL-VIGA-------GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINP  110 (392)
T ss_pred             HHhcCCEE-EECC-------CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCC
Confidence            46778888 9999       7999999555333322223333211                   3578888899999988


Q ss_pred             CCceEEEEccCCC
Q psy4251          83 SAQCIAMELDLCR   95 (292)
Q Consensus        83 ~~~~~~~~~Dls~   95 (292)
                      ..++..+..+++.
T Consensus       111 ~v~i~~~~~~i~~  123 (392)
T PRK07878        111 LVNVRLHEFRLDP  123 (392)
T ss_pred             CcEEEEEeccCCh
Confidence            8888877777764

>PRK06849 hypothetical protein; Provisional

Probab=93.16  E-value=0.75  Score=41.89  Aligned_cols=81  Identities=5%  Similarity=-0.075  Sum_probs=46.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHH--HHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWD--KANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +.++++ |||++      .++|+.+   +..+.+.|+.|++-+..  .... ..+..     .....++..-.+.+...+
T Consensus         3 ~~~~VL-I~G~~------~~~~l~i---ar~l~~~G~~Vi~~d~~~~~~~~-~s~~~-----d~~~~~p~p~~d~~~~~~   66 (389)
T PRK06849          3 TKKTVL-ITGAR------APAALEL---ARLFHNAGHTVILADSLKYPLSR-FSRAV-----DGFYTIPSPRWDPDAYIQ   66 (389)
T ss_pred             CCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCchHHHH-HHHhh-----hheEEeCCCCCCHHHHHH
Confidence            357888 99998      8899999   55566778888753222  2111 11111     123333223334444444


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      .+.++.++. ++|+||-...
T Consensus        67 ~L~~i~~~~-~id~vIP~~e   85 (389)
T PRK06849         67 ALLSIVQRE-NIDLLIPTCE   85 (389)
T ss_pred             HHHHHHHHc-CCCEEEECCh
Confidence            444555554 4899998775

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.14  E-value=1.2  Score=39.66  Aligned_cols=95  Identities=14%  Similarity=0.103  Sum_probs=56.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|+.+. |+|+       +|+|....+.+..+   |+.|+  .|+.++.+.+.+ |     +....+   |-++.+....
T Consensus       166 pG~~V~-I~G~-------GGlGh~avQ~Aka~---ga~Via~~~~~~K~e~a~~-l-----GAd~~i---~~~~~~~~~~  225 (339)
T COG1064         166 PGKWVA-VVGA-------GGLGHMAVQYAKAM---GAEVIAITRSEEKLELAKK-L-----GADHVI---NSSDSDALEA  225 (339)
T ss_pred             CCCEEE-EECC-------cHHHHHHHHHHHHc---CCeEEEEeCChHHHHHHHH-h-----CCcEEE---EcCCchhhHH
Confidence            488888 9999       69998886655544   45555  488887765443 3     222222   2223333333


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +-+       ..|++|.+++ ..                       .....++.++.  .  |++|.++-..
T Consensus       226 ~~~-------~~d~ii~tv~-~~-----------------------~~~~~l~~l~~--~--G~~v~vG~~~  262 (339)
T COG1064         226 VKE-------IADAIIDTVG-PA-----------------------TLEPSLKALRR--G--GTLVLVGLPG  262 (339)
T ss_pred             hHh-------hCcEEEECCC-hh-----------------------hHHHHHHHHhc--C--CEEEEECCCC
Confidence            322       1899999988 31                       12334445553  3  9999998874

>KOG1198|consensus

Probab=93.13  E-value=0.31  Score=43.68  Aligned_cols=80  Identities=13%  Similarity=0.098  Sum_probs=47.8

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      -.|+.++ |.||+      +|.|.+....+.... . ..|+.-+.++..+.++++.+    .    ...|-.+    .++
T Consensus       156 ~~g~~vL-v~ggs------ggVG~~aiQlAk~~~-~-~~v~t~~s~e~~~l~k~lGA----d----~vvdy~~----~~~  214 (347)
T KOG1198|consen  156 SKGKSVL-VLGGS------GGVGTAAIQLAKHAG-A-IKVVTACSKEKLELVKKLGA----D----EVVDYKD----ENV  214 (347)
T ss_pred             CCCCeEE-EEeCC------cHHHHHHHHHHHhcC-C-cEEEEEcccchHHHHHHcCC----c----EeecCCC----HHH
Confidence            3566777 99999      999999966655443 2 34443333334455554421    1    2246666    333


Q ss_pred             HHHHHHh-CCCccEEEEccccc
Q psy4251         103 AEEYQKK-FRSLNILVLNAGVF  123 (292)
Q Consensus       103 ~~~~~~~-~~~id~lI~nAg~~  123 (292)
                      .+++++. .+++|+|+-|.|-.
T Consensus       215 ~e~~kk~~~~~~DvVlD~vg~~  236 (347)
T KOG1198|consen  215 VELIKKYTGKGVDVVLDCVGGS  236 (347)
T ss_pred             HHHHHhhcCCCccEEEECCCCC
Confidence            3334332 46899999999864

>KOG4039|consensus

Probab=92.82  E-value=0.62  Score=37.27  Aligned_cols=154  Identities=17%  Similarity=0.006  Sum_probs=84.3

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+++.++ |.|||      +-.|..+.+++.+...-.. .++.|.... ..      +.  ...+.....|.+..++   
T Consensus        16 mq~~s~f-vlGAt------G~~G~~llk~~~E~~~FSKV~~i~RR~~~-d~------at--~k~v~q~~vDf~Kl~~---   76 (238)
T KOG4039|consen   16 MQNMSGF-VLGAT------GLCGGGLLKHAQEAPQFSKVYAILRRELP-DP------AT--DKVVAQVEVDFSKLSQ---   76 (238)
T ss_pred             hhccceE-EEecc------ccccHHHHHHHHhcccceeEEEEEeccCC-Cc------cc--cceeeeEEechHHHHH---
Confidence            5677888 99999      8899999666655544433 344554211 00      01  3355556677655443   


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      .++.+    -.+|+++++-|......  ..|+   .+.+..-=.    ..+...-++...  -++|.+||..+...    
T Consensus        77 ~a~~~----qg~dV~FcaLgTTRgka--Gadg---fykvDhDyv----l~~A~~AKe~Gc--k~fvLvSS~GAd~s----  137 (238)
T KOG4039|consen   77 LATNE----QGPDVLFCALGTTRGKA--GADG---FYKVDHDYV----LQLAQAAKEKGC--KTFVLVSSAGADPS----  137 (238)
T ss_pred             HHhhh----cCCceEEEeeccccccc--ccCc---eEeechHHH----HHHHHHHHhCCC--eEEEEEeccCCCcc----
Confidence            33333    46899999988752111  1111   111111101    112222344445  68999999866532    


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                                       ..-.|-..|.-++.=.-+|.-      =++..+.||.+.
T Consensus       138 -----------------SrFlY~k~KGEvE~~v~eL~F------~~~~i~RPG~ll  170 (238)
T KOG4039|consen  138 -----------------SRFLYMKMKGEVERDVIELDF------KHIIILRPGPLL  170 (238)
T ss_pred             -----------------cceeeeeccchhhhhhhhccc------cEEEEecCccee
Confidence                             233466666655543333221      268889999988

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=92.79  E-value=1.3  Score=39.14  Aligned_cols=117  Identities=12%  Similarity=0.073  Sum_probs=69.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc----EEEEcCHHHHHHHHHHHHhhCCC-CceEEEEccCCChHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK----LFYQNCWDKANDAISKILTEKPS-AQCIAMELDLCRLKS   98 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~----~v~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dls~~~~   98 (292)
                      .++++. |+|+       +++|..+|.   .+...+.    .++.++.++++....++.+..+- .++... .  .+.+ 
T Consensus         5 ~~~ki~-iiGa-------G~vG~~~a~---~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~~~-   69 (315)
T PRK00066          5 QHNKVV-LVGD-------GAVGSSYAY---ALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GDYS-   69 (315)
T ss_pred             CCCEEE-EECC-------CHHHHHHHH---HHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CCHH-
Confidence            467888 9998       789999955   4444443    33457788888888888765421 122222 1  1221 


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~  175 (292)
                            .    +..-|++|..||....+. .+   ....++.|.    -+++.+.+.+.+. +.  +.++++|.....
T Consensus        70 ------~----~~~adivIitag~~~k~g-~~---R~dll~~N~----~i~~~i~~~i~~~~~~--~~vivvsNP~d~  127 (315)
T PRK00066         70 ------D----CKDADLVVITAGAPQKPG-ET---RLDLVEKNL----KIFKSIVGEVMASGFD--GIFLVASNPVDI  127 (315)
T ss_pred             ------H----hCCCCEEEEecCCCCCCC-CC---HHHHHHHHH----HHHHHHHHHHHHhCCC--eEEEEccCcHHH
Confidence                  1    235799999999853322 12   234444443    3445555555543 34  888888876433

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=92.35  E-value=0.49  Score=42.05  Aligned_cols=112  Identities=11%  Similarity=0.019  Sum_probs=61.3

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcC---------cEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS---------KLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g---------~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +. |+|++      +.+|..++..   +...+         ..++.++++.              ........|+.|...
T Consensus         2 V~-IiGaa------G~VG~~~a~~---l~~~~~~~~~~e~el~LiD~~~~~--------------~~a~g~~~Dl~d~~~   57 (324)
T TIGR01758         2 VV-VTGAA------GQIGYALLPM---IARGRMLGKDQPIILHLLDIPPAM--------------KVLEGVVMELMDCAF   57 (324)
T ss_pred             EE-EECCC------cHHHHHHHHH---HHhccccCCCCccEEEEEecCCcc--------------cccceeEeehhcccc
Confidence            45 99998      8999999554   44322         2233332211              113334556665541


Q ss_pred             HH--HH--HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc--CCCCcEEEEEcCc
Q psy4251          99 VK--KF--AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFARVVVVSSE  172 (292)
Q Consensus        99 v~--~~--~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~--~~~~~~iV~vsS~  172 (292)
                      ..  ..  .....+.....|++|++||.....    .+.+...+..|    .-+.+.+.+.+.+.  +.  +.|+++|..
T Consensus        58 ~~~~~~~~~~~~~~~~~~aDiVVitAG~~~~~----~~tr~~ll~~N----~~i~k~i~~~i~~~~~~~--~iiivvsNP  127 (324)
T TIGR01758        58 PLLDGVVPTHDPAVAFTDVDVAILVGAFPRKE----GMERRDLLSKN----VKIFKEQGRALDKLAKKD--CKVLVVGNP  127 (324)
T ss_pred             hhcCceeccCChHHHhCCCCEEEEcCCCCCCC----CCcHHHHHHHH----HHHHHHHHHHHHhhCCCC--eEEEEeCCc
Confidence            11  00  001123345799999999975321    22345555555    44566666666654  34  778887765


Q ss_pred             c
Q psy4251         173 S  173 (292)
Q Consensus       173 ~  173 (292)
                      .
T Consensus       128 v  128 (324)
T TIGR01758       128 A  128 (324)
T ss_pred             H
Confidence            3

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=92.31  E-value=0.51  Score=41.04  Aligned_cols=62  Identities=11%  Similarity=0.104  Sum_probs=43.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEc-------------------CHHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQN-------------------CWDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r-------------------~~~~~~~~~~~l~   78 (292)
                      ..|...+++ |.|+       +|+|-++|   ..|+..|.   +++..                   ...|++.+.++|+
T Consensus        15 ~kL~~s~VL-IvG~-------gGLG~Eia---KnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~   83 (286)
T cd01491          15 KKLQKSNVL-ISGL-------GGLGVEIA---KNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLA   83 (286)
T ss_pred             HHHhcCcEE-EEcC-------CHHHHHHH---HHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHH
Confidence            346677888 9999       79999994   44555553   33321                   1467888888999


Q ss_pred             hhCCCCceEEEEccC
Q psy4251          79 TEKPSAQCIAMELDL   93 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dl   93 (292)
                      +.+|..++..+..++
T Consensus        84 eLNp~V~V~~~~~~~   98 (286)
T cd01491          84 ELNPYVPVTVSTGPL   98 (286)
T ss_pred             HHCCCCEEEEEeccC
Confidence            998888887776553

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=92.04  E-value=0.55  Score=41.47  Aligned_cols=74  Identities=8%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +.|++++ |.|+       +.+|..+++.+.......+.++.|+.+++++.++++     +.  ..+     +.++..+.
T Consensus       176 l~~~~V~-ViGa-------G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-----g~--~~~-----~~~~~~~~  235 (311)
T cd05213         176 LKGKKVL-VIGA-------GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-----GG--NAV-----PLDELLEL  235 (311)
T ss_pred             ccCCEEE-EECc-------HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-----CC--eEE-----eHHHHHHH
Confidence            6789999 8888       799999966655433333455668888887777665     22  111     22222222


Q ss_pred             HHHHHHhCCCccEEEEccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~  123 (292)
                         +    ...|++|.+.+..
T Consensus       236 ---l----~~aDvVi~at~~~  249 (311)
T cd05213         236 ---L----NEADVVISATGAP  249 (311)
T ss_pred             ---H----hcCCEEEECCCCC
Confidence               2    2469999998854

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PLN00203 glutamyl-tRNA reductase

Probab=92.00  E-value=0.51  Score=44.64  Aligned_cols=48  Identities=4%  Similarity=-0.058  Sum_probs=34.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKI   77 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l   77 (292)
                      ++.+++++ |.|+       +++|..+++.+...+...+.|+.|+.++++.+.+++
T Consensus       263 ~l~~kkVl-VIGA-------G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~  310 (519)
T PLN00203        263 SHASARVL-VIGA-------GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF  310 (519)
T ss_pred             CCCCCEEE-EEeC-------HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence            47899999 8898       799999966654432223455569998888776655

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=92.00  E-value=1.1  Score=41.42  Aligned_cols=113  Identities=12%  Similarity=0.056  Sum_probs=67.3

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-------C----cEEEEcCHHHHHHHHHHHHhhC-CCC-ceEEEEccC
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-------S----KLFYQNCWDKANDAISKILTEK-PSA-QCIAMELDL   93 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-------g----~~v~~r~~~~~~~~~~~l~~~~-~~~-~~~~~~~Dl   93 (292)
                      ++. |+|++      +-+|..+   +..++..       +    ..++.++.++++..+-+|.+.. +-. ++. +..  
T Consensus       102 KV~-IIGAa------G~VG~~~---A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~-i~~--  168 (444)
T PLN00112        102 NVA-VSGAA------GMISNHL---LFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVS-IGI--  168 (444)
T ss_pred             EEE-EECCC------cHHHHHH---HHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceE-Eec--
Confidence            466 99998      8899999   5545444       3    3334578888888888887653 211 211 111  


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh--cCCCCcEEEEEcC
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK--GAKLFARVVVVSS  171 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~--~~~~~~~iV~vsS  171 (292)
                      .+.+.           +..-|++|..||....+.    +.....++.|.    -+.+...+.+.+  ++.  +.||++|.
T Consensus       169 ~~ye~-----------~kdaDiVVitAG~prkpG----~tR~dLl~~N~----~I~k~i~~~I~~~a~p~--~ivIVVsN  227 (444)
T PLN00112        169 DPYEV-----------FQDAEWALLIGAKPRGPG----MERADLLDING----QIFAEQGKALNEVASRN--VKVIVVGN  227 (444)
T ss_pred             CCHHH-----------hCcCCEEEECCCCCCCCC----CCHHHHHHHHH----HHHHHHHHHHHHhcCCC--eEEEEcCC
Confidence            12222           346799999999853221    22344555554    455666666655  234  78888886


Q ss_pred             cc
Q psy4251         172 ES  173 (292)
Q Consensus       172 ~~  173 (292)
                      ..
T Consensus       228 Pv  229 (444)
T PLN00112        228 PC  229 (444)
T ss_pred             cH
Confidence            53

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=91.97  E-value=1.1  Score=38.82  Aligned_cols=78  Identities=12%  Similarity=0.124  Sum_probs=44.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +++|.++++.+.   ..|..|+  .++.++.+.+ +++     +..   ...|..+.+....
T Consensus       139 ~~~~vl-v~g~~------~~ig~~~~~~~~---~~g~~v~~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~  199 (323)
T cd05276         139 AGETVL-IHGGA------SGVGTAAIQLAK---ALGARVIATAGSEEKLEAC-RAL-----GAD---VAINYRTEDFAEE  199 (323)
T ss_pred             CCCEEE-EEcCc------ChHHHHHHHHHH---HcCCEEEEEcCCHHHHHHH-HHc-----CCC---EEEeCCchhHHHH
Confidence            467888 99999      999999966544   4555555  3565554443 222     221   1233333333333


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+.. . .+.+|++++++|.
T Consensus       200 ~~~~~-~-~~~~d~vi~~~g~  218 (323)
T cd05276         200 VKEAT-G-GRGVDVILDMVGG  218 (323)
T ss_pred             HHHHh-C-CCCeEEEEECCch
Confidence            32222 1 1369999999883

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.85  E-value=0.52  Score=42.69  Aligned_cols=77  Identities=5%  Similarity=0.014  Sum_probs=45.6

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +.+++++ |.|+       +++|+.+++.+..++. .+.++.|+.++++++.+.+     +..   +..+..+.+.+.+.
T Consensus       165 l~~~~Vl-ViGa-------G~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~-----g~~---v~~~~~~~~~l~~~  227 (370)
T TIGR00518       165 VEPGDVT-IIGG-------GVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF-----GGR---IHTRYSNAYEIEDA  227 (370)
T ss_pred             CCCceEE-EEcC-------CHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc-----Cce---eEeccCCHHHHHHH
Confidence            4567777 7788       7899999666555532 2444457777765544332     111   22344454443333


Q ss_pred             HHHHHHhCCCccEEEEccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~  123 (292)
                      +       ...|++|+++++.
T Consensus       228 l-------~~aDvVI~a~~~~  241 (370)
T TIGR00518       228 V-------KRADLLIGAVLIP  241 (370)
T ss_pred             H-------ccCCEEEEccccC
Confidence            2       3479999988763

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=91.84  E-value=0.65  Score=42.90  Aligned_cols=48  Identities=6%  Similarity=0.034  Sum_probs=33.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKI   77 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l   77 (292)
                      ++.|++++ |.|+       +++|..+++.+...+.....++.|+.+++++.++++
T Consensus       179 ~~~~~~vl-ViGa-------G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~  226 (423)
T PRK00045        179 DLSGKKVL-VIGA-------GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF  226 (423)
T ss_pred             CccCCEEE-EECc-------hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc
Confidence            47889999 8888       799999966654332223445568888877766554

>PRK14852 hypothetical protein; Provisional

Probab=91.78  E-value=0.57  Score=47.26  Aligned_cols=85  Identities=9%  Similarity=0.001  Sum_probs=56.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEK   81 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~   81 (292)
                      ..|+..+|+ |.|.       +|+|-.++..+...+-...+++..|                   ..|++.+++.+++.+
T Consensus       328 ~kL~~srVl-VvGl-------GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~IN  399 (989)
T PRK14852        328 RRLLRSRVA-IAGL-------GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVN  399 (989)
T ss_pred             HHHhcCcEE-EECC-------cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHC
Confidence            347788888 8898       7999999554333322223333111                   458888899999999


Q ss_pred             CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        82 ~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      |..++..+...++. +.+.++++       ..|+||.+..
T Consensus       400 P~v~I~~~~~~I~~-en~~~fl~-------~~DiVVDa~D  431 (989)
T PRK14852        400 PFLDIRSFPEGVAA-ETIDAFLK-------DVDLLVDGID  431 (989)
T ss_pred             CCCeEEEEecCCCH-HHHHHHhh-------CCCEEEECCC
Confidence            98899999888744 45554432       4688876543

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=91.48  E-value=1.1  Score=39.29  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=42.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+|++      +++|.++++.+.   ..|..|+  .++.++.+.+ +   +.  +.. .++  |.   ++   
T Consensus       162 ~~~~vl-I~ga~------g~vG~~~~~~a~---~~g~~v~~~~~~~~~~~~~-~---~~--~~~-~~~--~~---~~---  216 (332)
T cd08259         162 KGDTVL-VTGAG------GGVGIHAIQLAK---ALGARVIAVTRSPEKLKIL-K---EL--GAD-YVI--DG---SK---  216 (332)
T ss_pred             CCCEEE-EECCC------CHHHHHHHHHHH---HcCCeEEEEeCCHHHHHHH-H---Hc--CCc-EEE--ec---HH---
Confidence            467788 99999      999999955544   5565654  4666554433 2   21  211 111  21   11   


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+.+.+ ...+|++++++|.
T Consensus       217 ~~~~~~~-~~~~d~v~~~~g~  236 (332)
T cd08259         217 FSEDVKK-LGGADVVIELVGS  236 (332)
T ss_pred             HHHHHHh-ccCCCEEEECCCh
Confidence            2222322 2369999999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=91.45  E-value=2.5  Score=37.05  Aligned_cols=78  Identities=9%  Similarity=0.063  Sum_probs=43.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |.|++      +++|.+++..+.+   .|..|+.  ++.++.+.+.+.+     +.. .++  |..+.+..+.
T Consensus       145 ~~~~vl-I~g~~------g~ig~~~~~~a~~---~G~~vi~~~~~~~~~~~~~~~~-----g~~-~~~--~~~~~~~~~~  206 (329)
T cd05288         145 PGETVV-VSAAA------GAVGSVVGQIAKL---LGARVVGIAGSDEKCRWLVEEL-----GFD-AAI--NYKTPDLAEA  206 (329)
T ss_pred             CCCEEE-EecCc------chHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHhhc-----CCc-eEE--ecCChhHHHH
Confidence            467888 99998      9999999666554   4555543  5565544333222     211 111  2223222222


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +. +...  +.+|+++.+.|.
T Consensus       207 v~-~~~~--~~~d~vi~~~g~  224 (329)
T cd05288         207 LK-EAAP--DGIDVYFDNVGG  224 (329)
T ss_pred             HH-Hhcc--CCceEEEEcchH
Confidence            22 2211  469999998873

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=91.35  E-value=0.26  Score=33.40  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=21.1

Q ss_pred             CC-ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCH
Q psy4251          24 NG-CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCW   67 (292)
Q Consensus        24 ~g-~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~   67 (292)
                      +| |+++ |+|++      +|.|++. +.+..+ ..|+.-++-+.
T Consensus        37 ~GpK~VL-ViGaS------tGyGLAs-RIa~aF-g~gA~TiGV~f   72 (78)
T PF12242_consen   37 NGPKKVL-VIGAS------TGYGLAS-RIAAAF-GAGADTIGVSF   72 (78)
T ss_dssp             TS-SEEE-EES-S------SHHHHHH-HHHHHH-CC--EEEEEE-
T ss_pred             CCCceEE-EEecC------CcccHHH-HHHHHh-cCCCCEEEEee
Confidence            56 6677 99999      9999995 224444 66766665343

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=91.26  E-value=1.6  Score=39.64  Aligned_cols=118  Identities=9%  Similarity=-0.057  Sum_probs=66.7

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC----cEE----EEcCHHHHHHHHHHHHhhC-CCC-ceEEEEccCCCh
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLF----YQNCWDKANDAISKILTEK-PSA-QCIAMELDLCRL   96 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v----~~r~~~~~~~~~~~l~~~~-~~~-~~~~~~~Dls~~   96 (292)
                      ++. |+|++      +-+|..+|..+....-.+    +.+    +.++.++++..+.+|.+.. +-. ++.+ ..  .+.
T Consensus        46 KV~-IIGAa------G~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i-~~--~~y  115 (387)
T TIGR01757        46 NVA-VSGAA------GMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSI-GI--DPY  115 (387)
T ss_pred             EEE-EECCC------cHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEE-ec--CCH
Confidence            467 99998      889999955443333333    123    2467888888888887653 211 1111 11  121


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +           .+..-|++|.+||....+.    +.....+..|.    -+.+...+.+.+..++.++||++|...
T Consensus       116 ~-----------~~kdaDIVVitAG~prkpg----~tR~dll~~N~----~I~k~i~~~I~~~a~~~~iviVVsNPv  173 (387)
T TIGR01757       116 E-----------VFEDADWALLIGAKPRGPG----MERADLLDING----QIFADQGKALNAVASKNCKVLVVGNPC  173 (387)
T ss_pred             H-----------HhCCCCEEEECCCCCCCCC----CCHHHHHHHHH----HHHHHHHHHHHHhCCCCeEEEEcCCcH
Confidence            1           2246799999999853322    22344454443    455666666655221127888888653

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=91.06  E-value=1.5  Score=40.51  Aligned_cols=77  Identities=10%  Similarity=0.072  Sum_probs=49.5

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc------E--EEEcC-------------------HHHHHHHHHHHHhh
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK------L--FYQNC-------------------WDKANDAISKILTE   80 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~------~--v~~r~-------------------~~~~~~~~~~l~~~   80 (292)
                      ++ |.|+       +|+|-++   +..|+..|+      .  |+..+                   ..|++.+++.+++.
T Consensus         2 Vl-vVGa-------GGlGcE~---lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~l   70 (435)
T cd01490           2 VF-LVGA-------GAIGCEL---LKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAM   70 (435)
T ss_pred             EE-EECC-------CHHHHHH---HHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHH
Confidence            45 8888       7999999   555555554      2  32111                   45778888888888


Q ss_pred             CCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEc
Q psy4251          81 KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLN  119 (292)
Q Consensus        81 ~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~n  119 (292)
                      .|..++..+...+..... ..+-.++   +...|+||++
T Consensus        71 Np~v~I~a~~~~v~~~~~-~~~~~~f---~~~~DvVi~a  105 (435)
T cd01490          71 NPDLKITALQNRVGPETE-HIFNDEF---WEKLDGVANA  105 (435)
T ss_pred             CCCCEEEEEecccChhhh-hhhhHHH---hcCCCEEEEC
Confidence            888888888877754221 1121222   3457888876

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=91.01  E-value=1.1  Score=39.82  Aligned_cols=77  Identities=8%  Similarity=-0.004  Sum_probs=42.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|++++ |+|+       +++|...+..+..++.....++.++.++.+. +.++     +....   .|..+ +++.+  
T Consensus       169 ~g~~Vl-V~G~-------G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~-a~~l-----Ga~~v---i~~~~-~~~~~--  228 (343)
T PRK09880        169 QGKRVF-VSGV-------GPIGCLIVAAVKTLGAAEIVCADVSPRSLSL-AREM-----GADKL---VNPQN-DDLDH--  228 (343)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHH-HHHc-----CCcEE---ecCCc-ccHHH--
Confidence            588888 8885       7999999665443321112223467666543 3333     22221   23333 22222  


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                        +.+..+.+|++|.++|.
T Consensus       229 --~~~~~g~~D~vid~~G~  245 (343)
T PRK09880        229 --YKAEKGYFDVSFEVSGH  245 (343)
T ss_pred             --HhccCCCCCEEEECCCC
Confidence              22223569999999883

>PLN02602 lactate dehydrogenase

Probab=90.99  E-value=2.8  Score=37.62  Aligned_cols=119  Identities=10%  Similarity=-0.007  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEEEcCHHHHHHHHHHHHhhCCCC-ceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFYQNCWDKANDAISKILTEKPSA-QCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~Dls~~~~v~~~~  103 (292)
                      +.+. |+|+       +.+|..+|..+....-.. ..++..+.++++..+.+|....+-. ... +..+ ++.+      
T Consensus        38 ~KI~-IIGa-------G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~-i~~~-~dy~------  101 (350)
T PLN02602         38 TKVS-VVGV-------GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTK-ILAS-TDYA------  101 (350)
T ss_pred             CEEE-EECC-------CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCE-EEeC-CCHH------
Confidence            5788 8897       789999965443322222 3344567777777777776653211 122 2211 1211      


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                       .    ...-|++|.+||....+. .+   -...+..|    .-+++.+.+.+.+.. +  +.++++|.....
T Consensus       102 -~----~~daDiVVitAG~~~k~g-~t---R~dll~~N----~~I~~~i~~~I~~~~p~--~ivivvtNPvdv  159 (350)
T PLN02602        102 -V----TAGSDLCIVTAGARQIPG-ES---RLNLLQRN----VALFRKIIPELAKYSPD--TILLIVSNPVDV  159 (350)
T ss_pred             -H----hCCCCEEEECCCCCCCcC-CC---HHHHHHHH----HHHHHHHHHHHHHHCCC--eEEEEecCchHH
Confidence             1    245799999999864322 12   23334444    345555555555443 4  888888876443

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.96  E-value=3.5  Score=38.63  Aligned_cols=76  Identities=8%  Similarity=-0.066  Sum_probs=46.1

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..++++++++ |.|+       +++|.++|+.   |...|+.|.+   ++.+......+.+++.  +  +.++..+-.. 
T Consensus        11 ~~~~~~~~v~-viG~-------G~~G~~~A~~---L~~~G~~V~~~d~~~~~~~~~~~~~l~~~--g--v~~~~~~~~~-   74 (480)
T PRK01438         11 HSDWQGLRVV-VAGL-------GVSGFAAADA---LLELGARVTVVDDGDDERHRALAAILEAL--G--ATVRLGPGPT-   74 (480)
T ss_pred             ccCcCCCEEE-EECC-------CHHHHHHHHH---HHHCCCEEEEEeCCchhhhHHHHHHHHHc--C--CEEEECCCcc-
Confidence            3457788988 8888       6899999544   5567777664   3344444445556543  2  3333322111 


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                                  .....|.||.+.|+.
T Consensus        75 ------------~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         75 ------------LPEDTDLVVTSPGWR   89 (480)
T ss_pred             ------------ccCCCCEEEECCCcC
Confidence                        013579999999985

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=90.67  E-value=0.95  Score=34.28  Aligned_cols=83  Identities=14%  Similarity=0.101  Sum_probs=48.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhh--------CCCCceEEEEccCCC
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTE--------KPSAQCIAMELDLCR   95 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~--------~~~~~~~~~~~Dls~   95 (292)
                      ++- |.|+       +-.|..+   ...|...|+.|..   |+.+..+.+...+...        .....+.+  +-+.|
T Consensus        12 ~I~-iIGa-------GrVG~~L---a~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~--iavpD   78 (127)
T PF10727_consen   12 KIG-IIGA-------GRVGTAL---ARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVF--IAVPD   78 (127)
T ss_dssp             EEE-EECT-------SCCCCHH---HHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEE--E-S-C
T ss_pred             EEE-EECC-------CHHHHHH---HHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEE--EEech
Confidence            455 7788       6889999   5556677888764   6666666665544211        11223333  33555


Q ss_pred             hHHHHHHHHHHHHh--CCCccEEEEccccc
Q psy4251          96 LKSVKKFAEEYQKK--FRSLNILVLNAGVF  123 (292)
Q Consensus        96 ~~~v~~~~~~~~~~--~~~id~lI~nAg~~  123 (292)
                       +.+..+++++...  ..+=.+|+||.|..
T Consensus        79 -daI~~va~~La~~~~~~~g~iVvHtSGa~  107 (127)
T PF10727_consen   79 -DAIAEVAEQLAQYGAWRPGQIVVHTSGAL  107 (127)
T ss_dssp             -CHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred             -HHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence             4789999999875  33446999999975

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.47  E-value=2.5  Score=37.96  Aligned_cols=77  Identities=12%  Similarity=0.023  Sum_probs=43.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +.+++ |+|+       +-||+..+..+..++....+++.++.++++-+.+..     +.....   +. ..+   ....
T Consensus       169 ~~~V~-V~Ga-------GpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~-----g~~~~~---~~-~~~---~~~~  228 (350)
T COG1063         169 GGTVV-VVGA-------GPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG-----GADVVV---NP-SED---DAGA  228 (350)
T ss_pred             CCEEE-EECC-------CHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC-----CCeEee---cC-ccc---cHHH
Confidence            34788 9999       799999855555444444444457788876655433     222211   11 111   2222


Q ss_pred             HHHHh-CC-CccEEEEccc
Q psy4251         105 EYQKK-FR-SLNILVLNAG  121 (292)
Q Consensus       105 ~~~~~-~~-~id~lI~nAg  121 (292)
                      .+.+. .+ ..|++|-++|
T Consensus       229 ~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         229 EILELTGGRGADVVIEAVG  247 (350)
T ss_pred             HHHHHhCCCCCCEEEECCC
Confidence            23222 23 5999999999

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=90.35  E-value=0.87  Score=41.97  Aligned_cols=48  Identities=13%  Similarity=0.165  Sum_probs=33.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKI   77 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l   77 (292)
                      ++.|++++ |.|+       +.+|..+++.+...+.....++.|+.+++++.++++
T Consensus       177 ~l~~~~Vl-ViGa-------G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~  224 (417)
T TIGR01035       177 SLKGKKAL-LIGA-------GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL  224 (417)
T ss_pred             CccCCEEE-EECC-------hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence            47789999 8898       799999966654432223445568888877666544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=90.30  E-value=0.59  Score=47.73  Aligned_cols=78  Identities=12%  Similarity=0.158  Sum_probs=52.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-------------cEEEEcCHHHHHHHHHHHHhhCCCCceEEEE
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-------------KLFYQNCWDKANDAISKILTEKPSAQCIAME   90 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-------------~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~   90 (292)
                      ..|.++ |.|+       +.+|...++.+.+.....             +.|+.++.++++++.+++    +  ++..++
T Consensus       568 ~~~rIl-VLGA-------G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~--~~~~v~  633 (1042)
T PLN02819        568 KSQNVL-ILGA-------GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----E--NAEAVQ  633 (1042)
T ss_pred             cCCcEE-EECC-------CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----C--CCceEE
Confidence            356777 8998       799999966655442221             233346777776655543    2  466789


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCccEEEEcccc
Q psy4251          91 LDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        91 ~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +|++|.+++.++++       .+|+||++...
T Consensus       634 lDv~D~e~L~~~v~-------~~DaVIsalP~  658 (1042)
T PLN02819        634 LDVSDSESLLKYVS-------QVDVVISLLPA  658 (1042)
T ss_pred             eecCCHHHHHHhhc-------CCCEEEECCCc
Confidence            99999888666533       38999998764

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.09  E-value=1.3  Score=41.18  Aligned_cols=76  Identities=12%  Similarity=0.009  Sum_probs=44.4

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +.+|+++ |+|.       +|+|.++   +..|...|+.|.+.+........+++.+..  ..+.+...+.. ..     
T Consensus         3 ~~~~~~~-v~G~-------g~~G~~~---a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~gi~~~~g~~~-~~-----   63 (445)
T PRK04308          3 FQNKKIL-VAGL-------GGTGISM---IAYLRKNGAEVAAYDAELKPERVAQIGKMF--DGLVFYTGRLK-DA-----   63 (445)
T ss_pred             CCCCEEE-EECC-------CHHHHHH---HHHHHHCCCEEEEEeCCCCchhHHHHhhcc--CCcEEEeCCCC-HH-----
Confidence            5688888 9998       6899999   455668888877643222112223343321  13444333221 11     


Q ss_pred             HHHHHHhCCCccEEEEccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~  123 (292)
                         +   ....|.||.+.|+.
T Consensus        64 ---~---~~~~d~vv~spgi~   78 (445)
T PRK04308         64 ---L---DNGFDILALSPGIS   78 (445)
T ss_pred             ---H---HhCCCEEEECCCCC
Confidence               1   13579999999986

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=89.31  E-value=13  Score=31.87  Aligned_cols=106  Identities=11%  Similarity=-0.009  Sum_probs=54.7

Q ss_pred             HHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCC-CCCCC
Q psy4251          53 FDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL-GFSHT  130 (292)
Q Consensus        53 ~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~-~~~~~  130 (292)
                      ..+...|.++.+ .+..+++.+.+.+.+.. -.++.++..|..+..          ...+++|.|+.++--.+. .....
T Consensus        91 ~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~~~v~~~~~D~~~~~----------~~~~~fD~Vl~D~Pcsg~G~~~~~  159 (264)
T TIGR00446        91 ALMKNEGAIVANEFSKSRTKVLIANINRCG-VLNVAVTNFDGRVFG----------AAVPKFDAILLDAPCSGEGVIRKD  159 (264)
T ss_pred             HHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-CCcEEEecCCHHHhh----------hhccCCCEEEEcCCCCCCcccccC
Confidence            333334544333 77888888888887652 235777777754321          112468999987633211 00001


Q ss_pred             Ccc----hhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         131 EDG----FETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       131 ~~~----~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      ++.    -+..+..-..-...+++...+.++  ++  |++|+.+++.
T Consensus       160 p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk--pg--G~lvYstcs~  202 (264)
T TIGR00446       160 PSRKKNWSEEDIQEISALQKELIDSAFDALK--PG--GVLVYSTCSL  202 (264)
T ss_pred             hhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC--CC--CEEEEEeCCC
Confidence            111    111222112223345566666665  34  8999887753

>KOG1197|consensus

Probab=89.27  E-value=12  Score=31.99  Aligned_cols=157  Identities=15%  Similarity=0.111  Sum_probs=78.8

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |-+++ |--|.      +|.|..++.+   +-..|.++|.  .+.++.+.+.+       ++.-  ...|-+.++-++++
T Consensus       147 GhtVl-vhaAA------GGVGlll~Ql---~ra~~a~tI~~asTaeK~~~ake-------nG~~--h~I~y~~eD~v~~V  207 (336)
T KOG1197|consen  147 GHTVL-VHAAA------GGVGLLLCQL---LRAVGAHTIATASTAEKHEIAKE-------NGAE--HPIDYSTEDYVDEV  207 (336)
T ss_pred             CCEEE-EEecc------ccHHHHHHHH---HHhcCcEEEEEeccHHHHHHHHh-------cCCc--ceeeccchhHHHHH
Confidence            67888 88888      9999999555   4456666664  34444443332       1111  23455544433333


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                       .++-+ -..+|++.-..|..         .+...+            .   .|+  +.  |.+|..+-.++..++.++.
T Consensus       208 -~kiTn-gKGVd~vyDsvG~d---------t~~~sl------------~---~Lk--~~--G~mVSfG~asgl~~p~~l~  257 (336)
T KOG1197|consen  208 -KKITN-GKGVDAVYDSVGKD---------TFAKSL------------A---ALK--PM--GKMVSFGNASGLIDPIPLN  257 (336)
T ss_pred             -HhccC-CCCceeeeccccch---------hhHHHH------------H---Hhc--cC--ceEEEeccccCCCCCeehh
Confidence             22211 12588887777642         222222            1   232  22  8999988877777765444


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCC
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCC  234 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG  234 (292)
                      ++....+..--    +.+..|-....-+...+..+=....  ..+|+|+.+.|=
T Consensus       258 ~ls~k~l~lvr----psl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~~ypl  307 (336)
T KOG1197|consen  258 QLSPKALQLVR----PSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDHVYPL  307 (336)
T ss_pred             hcChhhhhhcc----HhhhcccCCHHHHHHHHHHHHHHhhcCccceeeeeecch
Confidence            43322221100    0233444444333333222222221  225788888764

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=88.85  E-value=2.2  Score=37.61  Aligned_cols=116  Identities=11%  Similarity=0.074  Sum_probs=59.4

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc----EEEEcCH--HHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK----LFYQNCW--DKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~----~v~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++. |.|++      +.+|..+   +..++..|.    .++.++.  ++++....++.+........ ..+..++  +  
T Consensus         2 kI~-IiGat------G~vG~~~---a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~-~~i~~~~--d--   66 (309)
T cd05294           2 KVS-IIGAS------GRVGSAT---ALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGID-AEIKISS--D--   66 (309)
T ss_pred             EEE-EECCC------ChHHHHH---HHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCC-cEEEECC--C--
Confidence            466 89998      8999999   555556554    2334643  55555555554321110000 0111111  1  


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSES  173 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~  173 (292)
                        .+.    ...-|++|.++|....+. .+   ....++.|.-    +++.+.+.+.+. +.  +.||++++..
T Consensus        67 --~~~----l~~aDiViitag~p~~~~-~~---r~dl~~~n~~----i~~~~~~~i~~~~~~--~~viv~~npv  124 (309)
T cd05294          67 --LSD----VAGSDIVIITAGVPRKEG-MS---RLDLAKKNAK----IVKKYAKQIAEFAPD--TKILVVTNPV  124 (309)
T ss_pred             --HHH----hCCCCEEEEecCCCCCCC-CC---HHHHHHHHHH----HHHHHHHHHHHHCCC--eEEEEeCCch
Confidence              111    246799999999753211 12   2333444443    444444444433 34  7888888764

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=88.84  E-value=2.5  Score=37.57  Aligned_cols=115  Identities=12%  Similarity=0.003  Sum_probs=62.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-------EE--EEcC--HHHHHHHHHHHHhhC-CCC-ceEEEEccC
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-------LF--YQNC--WDKANDAISKILTEK-PSA-QCIAMELDL   93 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-------~v--~~r~--~~~~~~~~~~l~~~~-~~~-~~~~~~~Dl   93 (292)
                      ++. |+|++      +.+|..+|..   +...+.       .+  +..+  .++++..+.++.+.. +.. .+. +..  
T Consensus         5 KV~-IIGa~------G~VG~~~a~~---l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~-i~~--   71 (323)
T TIGR01759         5 RVA-VTGAA------GQIGYSLLFR---IASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVV-ATT--   71 (323)
T ss_pred             EEE-EECCC------cHHHHHHHHH---HHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcE-Eec--
Confidence            466 89998      8999999554   444442       33  3343  244666666665442 110 111 110  


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      .+           .+....-|++|.+||....+.    +.....+..|.    -+.+.+.+.+.+..++.+.|+++|...
T Consensus        72 ~~-----------~~~~~daDvVVitAG~~~k~g----~tR~dll~~Na----~i~~~i~~~i~~~~~~~~iiivvsNPv  132 (323)
T TIGR01759        72 DP-----------EEAFKDVDAALLVGAFPRKPG----MERADLLSKNG----KIFKEQGKALNKVAKKDVKVLVVGNPA  132 (323)
T ss_pred             Ch-----------HHHhCCCCEEEEeCCCCCCCC----CcHHHHHHHHH----HHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence            11           122245799999999853221    22344555554    455666666655432228888888653

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.74  E-value=0.92  Score=39.43  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=23.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCccc-chhhHHHHHHHHhhcCcEEEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTG-LKKKDGNLCFDLVQSSKLFYQ   64 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~G-iG~~~a~~~~~l~~~g~~v~~   64 (292)
                      .+++||+++ |.|+       +| .|+.+   +..|...|+.|.+
T Consensus       155 i~l~Gk~vv-ViG~-------gg~vGkpi---a~~L~~~gatVtv  188 (283)
T PRK14192        155 IELAGKHAV-VVGR-------SAILGKPM---AMMLLNANATVTI  188 (283)
T ss_pred             CCCCCCEEE-EECC-------cHHHHHHH---HHHHHhCCCEEEE
Confidence            467888888 8888       56 88888   4445566666653

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=88.71  E-value=0.73  Score=39.82  Aligned_cols=45  Identities=9%  Similarity=-0.032  Sum_probs=30.8

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKI   77 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l   77 (292)
                      +++++ |-|+       +|-+++++..+.++....+.|+.|+.++++++++++
T Consensus       122 ~~~vl-ilGa-------GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~  166 (272)
T PRK12550        122 DLVVA-LRGS-------GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY  166 (272)
T ss_pred             CCeEE-EECC-------cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence            46777 8888       799999955544433333556679998888776654

>PRK05442 malate dehydrogenase; Provisional

Probab=88.63  E-value=2.2  Score=37.94  Aligned_cols=119  Identities=11%  Similarity=-0.057  Sum_probs=62.7

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC------cEEEEc--CHHHHHHHHHHHHhhC-CC-CceEEEEccCCC
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS------KLFYQN--CWDKANDAISKILTEK-PS-AQCIAMELDLCR   95 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g------~~v~~r--~~~~~~~~~~~l~~~~-~~-~~~~~~~~Dls~   95 (292)
                      +.+. |+|++      +.+|..+|..+....-.+      ..++..  +.++++..+.++.+.. +. ..+.+ ..    
T Consensus         5 ~KV~-IiGaa------G~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i-~~----   72 (326)
T PRK05442          5 VRVA-VTGAA------GQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI-TD----   72 (326)
T ss_pred             cEEE-EECCC------cHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE-ec----
Confidence            4677 99998      899999955433322222      333334  2334555555554432 11 01111 10    


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                               ...+....-|++|.+||....+.    +.....++.|    .-+++.+.+.+.+..++.+.++++|...
T Consensus        73 ---------~~y~~~~daDiVVitaG~~~k~g----~tR~dll~~N----a~i~~~i~~~i~~~~~~~~iiivvsNPv  133 (326)
T PRK05442         73 ---------DPNVAFKDADVALLVGARPRGPG----MERKDLLEAN----GAIFTAQGKALNEVAARDVKVLVVGNPA  133 (326)
T ss_pred             ---------ChHHHhCCCCEEEEeCCCCCCCC----CcHHHHHHHH----HHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence                     11222346899999999753321    2334445444    4466667777766321128888888653

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=88.61  E-value=6.5  Score=34.05  Aligned_cols=149  Identities=15%  Similarity=0.124  Sum_probs=84.7

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhh-cCcEEEEc-CHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH-
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQ-SSKLFYQN-CWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE-  104 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~-~g~~v~~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~-  104 (292)
                      +|||||=       ||-|+.+|   ++..+ .|+..+.. -..-+.+.++.+.+..+..+-..+.+|+.+......+.+ 
T Consensus         3 ~vIiTGl-------SGaGKs~A---l~~lED~Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~   72 (284)
T PF03668_consen    3 LVIITGL-------SGAGKSTA---LRALEDLGYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDLFEA   72 (284)
T ss_pred             EEEEeCC-------CcCCHHHH---HHHHHhcCeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHHHHH
Confidence            3449998       79999994   43333 46666542 244566666666644444566788999999776655544 


Q ss_pred             --HHHHhCCCccEEEEccccc------------CCCCC--CCCcchhh--------------hhhhhhhHHHHHHHHHHH
Q psy4251         105 --EYQKKFRSLNILVLNAGVF------------GLGFS--HTEDGFET--------------TFQVNHLAHFYLTLQLEN  154 (292)
Q Consensus       105 --~~~~~~~~id~lI~nAg~~------------~~~~~--~~~~~~~~--------------~~~vN~~~~~~l~~~ll~  154 (292)
                        ++.+..-.+.+|.+.|.--            +|...  ...+++++              .+++.-+...-|-+.+..
T Consensus        73 ~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i~~  152 (284)
T PF03668_consen   73 LDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVIDTSNLSVHQLRERIRE  152 (284)
T ss_pred             HHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHH
Confidence              4444544789999998731            22211  11222222              244555555556666655


Q ss_pred             HHHhcCCCCcEEEEEcCcccccccCCCCCCCcc
Q psy4251         155 ALIKGAKLFARVVVVSSESHRYSYITKDTISKS  187 (292)
Q Consensus       155 ~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~  187 (292)
                      .+..... ..--|.+.|.+-..+.+...++-||
T Consensus       153 ~~~~~~~-~~l~v~i~SFGfK~GiP~dAD~VfD  184 (284)
T PF03668_consen  153 RFGGDKE-SRLTVTIQSFGFKYGIPPDADLVFD  184 (284)
T ss_pred             HhccCCC-CceEEEEEEeccccCCCCCCCEEEE
Confidence            5543221 1456777787666555444443333

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=88.53  E-value=2.7  Score=35.72  Aligned_cols=74  Identities=14%  Similarity=0.077  Sum_probs=43.3

Q ss_pred             ccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          42 TGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        42 ~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+|..+   +.+.....+..+-+.++.++.+.+.+.-..=..++.+++.|+.+.......        .++|.+|+|.=
T Consensus        56 G~l~L~l---a~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--------~~fD~Ii~NPP  124 (248)
T COG4123          56 GALGLLL---AQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--------ASFDLIICNPP  124 (248)
T ss_pred             CHHHHHH---hccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--------cccCEEEeCCC
Confidence            5566665   333222222223366666666666664422256899999887654432222        36999999998


Q ss_pred             ccCCC
Q psy4251         122 VFGLG  126 (292)
Q Consensus       122 ~~~~~  126 (292)
                      ++...
T Consensus       125 yf~~~  129 (248)
T COG4123         125 YFKQG  129 (248)
T ss_pred             CCCCc
Confidence            87543

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=88.13  E-value=1.7  Score=40.62  Aligned_cols=83  Identities=8%  Similarity=0.031  Sum_probs=47.2

Q ss_pred             CCCCCceEEEEcCC-C-------CCCC-C-cccchhhHHHHHHHHhhcCcEEEEcC-HHHHHHHHHHHHhhCCCCceEEE
Q psy4251          21 STYNGCLAILCTGD-M-------EFYP-R-YTGLKKKDGNLCFDLVQSSKLFYQNC-WDKANDAISKILTEKPSAQCIAM   89 (292)
Q Consensus        21 ~~l~g~~~vlItGa-~-------~~~~-~-~~GiG~~~a~~~~~l~~~g~~v~~r~-~~~~~~~~~~l~~~~~~~~~~~~   89 (292)
                      .+|+||+++ ||+| |       |++. + ++-+|+++|+.   +..+|+.|..-+ ...       +  .. ...+.++
T Consensus       252 ~~l~gkkvL-ITaGpT~E~IDpVR~ItN~SSGkmG~alA~a---a~~~GA~VtlI~Gp~~-------~--~~-p~~v~~i  317 (475)
T PRK13982        252 KPLAGRRVL-ITAGPTHEPIDPVRYIANRSSGKQGFAIAAA---AAAAGAEVTLISGPVD-------L--AD-PQGVKVI  317 (475)
T ss_pred             cccCCCEEE-EecCCccccCCcceeeCCCCchHHHHHHHHH---HHHCCCcEEEEeCCcC-------C--CC-CCCceEE
Confidence            469999999 8855 4       2333 2 34589999554   556666654311 100       1  01 1234444


Q ss_pred             EccCCChHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          90 ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        90 ~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      .  +.   +.+++.+.+.+.++ .|++|++|++.
T Consensus       318 ~--V~---ta~eM~~av~~~~~-~Di~I~aAAVa  345 (475)
T PRK13982        318 H--VE---SARQMLAAVEAALP-ADIAIFAAAVA  345 (475)
T ss_pred             E--ec---CHHHHHHHHHhhCC-CCEEEEecccc
Confidence            3  33   34455555555554 69999999986

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=87.94  E-value=2.8  Score=36.27  Aligned_cols=77  Identities=12%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +++|.++++.+.   ..|+.|+  .++.++.+.+ .++     +....   .|..+.+....
T Consensus       139 ~~~~vl-v~g~~------~~~g~~~~~~a~---~~g~~v~~~~~~~~~~~~~-~~~-----g~~~~---~~~~~~~~~~~  199 (325)
T TIGR02824       139 AGETVL-IHGGA------SGIGTTAIQLAK---AFGARVFTTAGSDEKCAAC-EAL-----GADIA---INYREEDFVEV  199 (325)
T ss_pred             CCCEEE-EEcCc------chHHHHHHHHHH---HcCCEEEEEeCCHHHHHHH-HHc-----CCcEE---EecCchhHHHH
Confidence            467888 99999      999999955544   4455554  4666554422 222     22111   22333333233


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+.. . ...+|++|+++|
T Consensus       200 ~~~~~-~-~~~~d~~i~~~~  217 (325)
T TIGR02824       200 VKAET-G-GKGVDVILDIVG  217 (325)
T ss_pred             HHHHc-C-CCCeEEEEECCc
Confidence            22221 1 125999999887

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PRK07877 hypothetical protein; Provisional

Probab=87.68  E-value=2.6  Score=41.57  Aligned_cols=81  Identities=16%  Similarity=0.074  Sum_probs=58.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEE-cC------------------HHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQ-NC------------------WDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~-r~------------------~~~~~~~~~~l~   78 (292)
                      ..|++.+|+ |.|.       + +|-.+   +..|+..|+   ..++ .|                  ..|++.+++++.
T Consensus       103 ~~L~~~~V~-IvG~-------G-lGs~~---a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~  170 (722)
T PRK07877        103 ERLGRLRIG-VVGL-------S-VGHAI---AHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIA  170 (722)
T ss_pred             HHHhcCCEE-EEEe-------c-HHHHH---HHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHH
Confidence            347788888 8886       4 89888   555666663   3222 21                  468888999999


Q ss_pred             hhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+|..++..+...++ .+.+.+++       ...|+||.|.-
T Consensus       171 ~inp~i~v~~~~~~i~-~~n~~~~l-------~~~DlVvD~~D  205 (722)
T PRK07877        171 ELDPYLPVEVFTDGLT-EDNVDAFL-------DGLDVVVEECD  205 (722)
T ss_pred             HHCCCCEEEEEeccCC-HHHHHHHh-------cCCCEEEECCC
Confidence            9999999999999998 56666553       24788888764

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=87.57  E-value=1.1  Score=41.99  Aligned_cols=46  Identities=15%  Similarity=0.089  Sum_probs=33.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKI   77 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l   77 (292)
                      .++++++++ |+|+       +|+|+++   +..+...|+.|+  .|+.+++++..+++
T Consensus       328 ~~~~~k~vl-IiGa-------GgiG~ai---a~~L~~~G~~V~i~~R~~~~~~~la~~~  375 (477)
T PRK09310        328 IPLNNQHVA-IVGA-------GGAAKAI---ATTLARAGAELLIFNRTKAHAEALASRC  375 (477)
T ss_pred             CCcCCCEEE-EEcC-------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            356788998 9996       7999999   555556665554  48887777665543

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=87.54  E-value=3.4  Score=37.24  Aligned_cols=77  Identities=13%  Similarity=-0.053  Sum_probs=42.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC-hHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR-LKSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v   99 (292)
                      .|.+++ |+|+       +++|..++..+..+   |+ .|+  .++.++.+.+ +++     +...   ..|..+ .+++
T Consensus       185 ~g~~Vl-V~G~-------G~iG~~a~q~Ak~~---G~~~Vi~~~~~~~~~~~a-~~~-----Ga~~---~i~~~~~~~~~  244 (368)
T TIGR02818       185 EGDTVA-VFGL-------GGIGLSVIQGARMA---KASRIIAIDINPAKFELA-KKL-----GATD---CVNPNDYDKPI  244 (368)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHH-HHh-----CCCe---EEcccccchhH
Confidence            477888 8885       89999996665443   44 343  3666665443 333     2222   123332 2223


Q ss_pred             HHHHHHHHHhCCCccEEEEcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.+.++..  +.+|++|.++|.
T Consensus       245 ~~~v~~~~~--~g~d~vid~~G~  265 (368)
T TIGR02818       245 QEVIVEITD--GGVDYSFECIGN  265 (368)
T ss_pred             HHHHHHHhC--CCCCEEEECCCC
Confidence            333333322  369999999884

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=87.26  E-value=3.1  Score=36.44  Aligned_cols=76  Identities=11%  Similarity=0.064  Sum_probs=42.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+||+      +++|..++..+..   .|+.|+  .++.++.+.+. ++     +... +  .|-.+.+..+.
T Consensus       143 ~g~~vl-I~ga~------g~vG~~aiqlA~~---~G~~vi~~~~s~~~~~~l~-~~-----Ga~~-v--i~~~~~~~~~~  203 (329)
T cd08294         143 AGETVV-VNGAA------GAVGSLVGQIAKI---KGCKVIGCAGSDDKVAWLK-EL-----GFDA-V--FNYKTVSLEEA  203 (329)
T ss_pred             CCCEEE-EecCc------cHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHH-Hc-----CCCE-E--EeCCCccHHHH
Confidence            478888 99999      9999999666554   355554  35665544332 22     2221 1  23222222222


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                       +.+...  +.+|+++.+.|
T Consensus       204 -v~~~~~--~gvd~vld~~g  220 (329)
T cd08294         204 -LKEAAP--DGIDCYFDNVG  220 (329)
T ss_pred             -HHHHCC--CCcEEEEECCC
Confidence             222211  36999998877

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=87.20  E-value=5  Score=35.18  Aligned_cols=113  Identities=15%  Similarity=0.049  Sum_probs=63.3

Q ss_pred             EcCCCCCCCCcccchhhHHHHHHHHhhcC----cEEEEcCHHHHHHHHHHHHhhCCC-CceEEEEccCCChHHHHHHHHH
Q psy4251          31 CTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLFYQNCWDKANDAISKILTEKPS-AQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        31 ItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      |.|+       +++|..+|   ..++..|    ..++..+.++++....+|.+..+. .......+  ++.       +.
T Consensus         3 iiGa-------G~VG~~~a---~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~~-------~~   63 (300)
T cd00300           3 IIGA-------GNVGAAVA---FALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GDY-------AD   63 (300)
T ss_pred             EECC-------CHHHHHHH---HHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CCH-------HH
Confidence            6677       67999994   4454545    333457777788888888765322 11121111  111       12


Q ss_pred             HHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         106 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +    ..-|++|.+||....+.    +.....+..|    .-+++.+.+.+.+..+ .+.|+++|.....
T Consensus        64 l----~~aDiVIitag~p~~~~----~~R~~l~~~n----~~i~~~~~~~i~~~~p-~~~viv~sNP~d~  120 (300)
T cd00300          64 A----ADADIVVITAGAPRKPG----ETRLDLINRN----APILRSVITNLKKYGP-DAIILVVSNPVDI  120 (300)
T ss_pred             h----CCCCEEEEcCCCCCCCC----CCHHHHHHHH----HHHHHHHHHHHHHhCC-CeEEEEccChHHH
Confidence            2    45799999999753221    1223333333    4455666666655432 2888888876543

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>KOG2015|consensus

Probab=87.01  E-value=1.4  Score=38.60  Aligned_cols=64  Identities=16%  Similarity=0.083  Sum_probs=44.8

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC---cEEEEcC-------------------HHHHHHHHHHHHhh
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS---KLFYQNC-------------------WDKANDAISKILTE   80 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g---~~v~~r~-------------------~~~~~~~~~~l~~~   80 (292)
                      +....++ |.||       +|+|-++   +..|+-.|   .+|+..+                   ..|++.+++-+.+.
T Consensus        38 l~~~kiL-viGA-------GGLGCEl---LKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~R  106 (422)
T KOG2015|consen   38 LQDCKIL-VIGA-------GGLGCEL---LKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRR  106 (422)
T ss_pred             HhhCcEE-EEcc-------CcccHHH---HHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhh
Confidence            4566777 9999       7999999   77777766   4555322                   45677777777777


Q ss_pred             CCCCceEEEEccCCChH
Q psy4251          81 KPSAQCIAMELDLCRLK   97 (292)
Q Consensus        81 ~~~~~~~~~~~Dls~~~   97 (292)
                      .|+..+.....++.|..
T Consensus       107 vp~~~v~~h~~kIqd~~  123 (422)
T KOG2015|consen  107 VPGCVVVPHRQKIQDKP  123 (422)
T ss_pred             CCCcEEeeeecchhcCC
Confidence            77777677766666543

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=86.24  E-value=12  Score=33.33  Aligned_cols=39  Identities=15%  Similarity=0.032  Sum_probs=26.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDA   73 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~   73 (292)
                      .|++++ |.|+       +++|..++..+...   |..|+  .++.++.+.+
T Consensus       166 ~g~~Vl-V~G~-------G~vG~~a~~~a~~~---G~~vi~~~~~~~~~~~~  206 (349)
T TIGR03201       166 KGDLVI-VIGA-------GGVGGYMVQTAKAM---GAAVVAIDIDPEKLEMM  206 (349)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHH
Confidence            478888 9997       79999996665544   44444  3677665543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02740 Alcohol dehydrogenase-like

Probab=86.06  E-value=3.6  Score=37.22  Aligned_cols=80  Identities=11%  Similarity=-0.060  Sum_probs=42.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh-HHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRL-KSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~  102 (292)
                      .|.+++ |.|+       +++|..++..+..++....+++.++.++.+.+ +++     +... ++  |..+. ++..+.
T Consensus       198 ~g~~Vl-V~G~-------G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a-~~~-----Ga~~-~i--~~~~~~~~~~~~  260 (381)
T PLN02740        198 AGSSVA-IFGL-------GAVGLAVAEGARARGASKIIGVDINPEKFEKG-KEM-----GITD-FI--NPKDSDKPVHER  260 (381)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH-HHc-----CCcE-EE--ecccccchHHHH
Confidence            477888 8885       89999996665544211122234666665544 222     2222 22  33322 123333


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.++..  +.+|++|.++|.
T Consensus       261 v~~~~~--~g~dvvid~~G~  278 (381)
T PLN02740        261 IREMTG--GGVDYSFECAGN  278 (381)
T ss_pred             HHHHhC--CCCCEEEECCCC
Confidence            333322  269999999884

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=85.91  E-value=4.2  Score=36.60  Aligned_cols=80  Identities=14%  Similarity=-0.054  Sum_probs=44.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh-HHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRL-KSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~  102 (292)
                      .|.+++ |.|+       +++|..++..+..++....+++.++.++.+.+ +++     +....   .|..+. +++.+.
T Consensus       186 ~g~~Vl-V~G~-------G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l-----Ga~~~---i~~~~~~~~~~~~  248 (368)
T cd08300         186 PGSTVA-VFGL-------GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF-----GATDC---VNPKDHDKPIQQV  248 (368)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc-----CCCEE---EcccccchHHHHH
Confidence            478888 8874       89999996665544221222234677765533 333     22221   233332 234444


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.++..  +.+|+++.+.|.
T Consensus       249 v~~~~~--~g~d~vid~~g~  266 (368)
T cd08300         249 LVEMTD--GGVDYTFECIGN  266 (368)
T ss_pred             HHHHhC--CCCcEEEECCCC
Confidence            444322  369999998873

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=85.68  E-value=14  Score=34.29  Aligned_cols=125  Identities=10%  Similarity=0.008  Sum_probs=63.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |.+++ =.|++     ++|....+   +......|.++.. .+..+++.+.+.+.... -.++.++..|..+......  
T Consensus       253 g~~VL-Dl~ag-----~G~kt~~l---a~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~~~v~~~~~D~~~~~~~~~--  320 (434)
T PRK14901        253 GEVIL-DACAA-----PGGKTTHI---AELMGDQGEIWAVDRSASRLKKLQENAQRLG-LKSIKILAADSRNLLELKP--  320 (434)
T ss_pred             cCEEE-EeCCC-----CchhHHHH---HHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-CCeEEEEeCChhhcccccc--
Confidence            55665 44433     04444444   3333334544443 77888888888876552 2358888888765421100  


Q ss_pred             HHHHHhCCCccEEEEcc---c--ccCCCC----CCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         104 EEYQKKFRSLNILVLNA---G--VFGLGF----SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nA---g--~~~~~~----~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                          ...+.+|.|+.+|   |  ......    ..+.++++..    ..-...+++.+...++  ++  |++|+.+++.
T Consensus       321 ----~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l----~~~Q~~iL~~a~~~lk--pg--G~lvystcsi  387 (434)
T PRK14901        321 ----QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQEL----APLQAELLESLAPLLK--PG--GTLVYATCTL  387 (434)
T ss_pred             ----cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHH----HHHHHHHHHHHHHhcC--CC--CEEEEEeCCC
Confidence                0113689999865   2  221111    1112221111    1112344555555554  34  9999987753

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=85.61  E-value=1.7  Score=37.24  Aligned_cols=71  Identities=11%  Similarity=0.097  Sum_probs=42.3

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ |+|||      + -|+.+   +..|.+.|+.|++  ++....+...    .   . ....+..|.-+.++..++++
T Consensus         2 ~IL-vlGGT------~-egr~l---a~~L~~~g~~v~~s~~t~~~~~~~~----~---~-g~~~v~~g~l~~~~l~~~l~   62 (256)
T TIGR00715         2 TVL-LMGGT------V-DSRAI---AKGLIAQGIEILVTVTTSEGKHLYP----I---H-QALTVHTGALDPQELREFLK   62 (256)
T ss_pred             eEE-EEech------H-HHHHH---HHHHHhCCCeEEEEEccCCcccccc----c---c-CCceEEECCCCHHHHHHHHH
Confidence            456 99997      4 48888   6666677887764  4443322211    1   1 12233455556666666654


Q ss_pred             HHHHhCCCccEEEEccc
Q psy4251         105 EYQKKFRSLNILVLNAG  121 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg  121 (292)
                      +     .++|+||..+.
T Consensus        63 ~-----~~i~~VIDAtH   74 (256)
T TIGR00715        63 R-----HSIDILVDATH   74 (256)
T ss_pred             h-----cCCCEEEEcCC
Confidence            4     26999998775

This enzyme was found to be a monomer by gel filtration.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=85.58  E-value=9  Score=34.00  Aligned_cols=126  Identities=9%  Similarity=0.029  Sum_probs=61.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCC--CCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKP--SAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~  101 (292)
                      +.+++. |.|+       +.+|..+|..++...-....++..++++++...-++.....  +....+...  +|.     
T Consensus         5 ~~~KI~-IIGa-------G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~--~d~-----   69 (321)
T PTZ00082          5 KRRKIS-LIGS-------GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT--NNY-----   69 (321)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC--CCH-----
Confidence            345677 8887       67899995553322212233444666554322222222110  111222110  121     


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCC-cchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTE-DGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~-~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                        +.+    ..-|++|.++|....+.+.+. ......+..|.    -+.+.+.+.+.+..+ .+.++++|.....
T Consensus        70 --~~l----~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~----~i~~~i~~~i~~~~p-~a~~iv~sNP~di  133 (321)
T PTZ00082         70 --EDI----AGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNA----KIMDEVAEGIKKYCP-NAFVIVITNPLDV  133 (321)
T ss_pred             --HHh----CCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHH----HHHHHHHHHHHHHCC-CeEEEEecCcHHH
Confidence              112    357999999998643222100 02244455553    456666666665442 1678888876543

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=85.56  E-value=3.7  Score=35.99  Aligned_cols=39  Identities=8%  Similarity=-0.172  Sum_probs=27.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKA   70 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~   70 (292)
                      .++.|++++ |.|.       +++|+.++..+.   ..|+.|.  .|+.++.
T Consensus       148 ~~l~g~kvl-ViG~-------G~iG~~~a~~L~---~~Ga~V~v~~r~~~~~  188 (296)
T PRK08306        148 ITIHGSNVL-VLGF-------GRTGMTLARTLK---ALGANVTVGARKSAHL  188 (296)
T ss_pred             CCCCCCEEE-EECC-------cHHHHHHHHHHH---HCCCEEEEEECCHHHH
Confidence            567899999 9998       689999955544   4455554  4775543

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=85.56  E-value=6.3  Score=35.02  Aligned_cols=38  Identities=13%  Similarity=-0.040  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE-E--EEcCHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL-F--YQNCWDKAND   72 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~-v--~~r~~~~~~~   72 (292)
                      .|++++ |+|+       +++|.+++..+..+   |.. |  +.++.++.+.
T Consensus       160 ~g~~vl-V~G~-------g~vG~~~~~~a~~~---G~~~v~~~~~~~~~~~~  200 (347)
T PRK10309        160 EGKNVI-IIGA-------GTIGLLAIQCAVAL---GAKSVTAIDINSEKLAL  200 (347)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHc---CCCeEEEECCCHHHHHH
Confidence            478888 8875       78999996665544   443 2  3366666543

>COG1926 Predicted phosphoribosyltransferases [General function prediction only]

Probab=85.54  E-value=6.6  Score=32.29  Aligned_cols=80  Identities=15%  Similarity=0.166  Sum_probs=40.4

Q ss_pred             ccCCCCCCCCCCceEEEE-----cCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEE
Q psy4251          14 NKLLHPASTYNGCLAILC-----TGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIA   88 (292)
Q Consensus        14 ~~~~~~~~~l~g~~~vlI-----tGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~   88 (292)
                      -...++..+++||+++||     ||+|         -++.++.+.+.....+.|.+  +-..+++.+.++..  ..++.+
T Consensus       113 yr~~~~~~~~~g~~VIlVDDGiATGat---------m~aAi~~~r~~~~~~IviAV--PV~p~~a~~~l~s~--~D~vvc  179 (220)
T COG1926         113 YRGGRPVPSLKGRTVILVDDGIATGAT---------MKAAVRALRAKGPKEIVIAV--PVAPEDAAAELESE--ADEVVC  179 (220)
T ss_pred             HcCCCCCCCCCCCEEEEEeCCcchhHH---------HHHHHHHHHhcCCceEEEEc--ccCCHHHHHHHHhh--cCeEEE
Confidence            345778899999999955     4444         33333333333223333332  33344555666655  445555


Q ss_pred             EEccCCChHHHHHHHHHHH
Q psy4251          89 MELDLCRLKSVKKFAEEYQ  107 (292)
Q Consensus        89 ~~~Dls~~~~v~~~~~~~~  107 (292)
                      +..--. ..+|..+.+++.
T Consensus       180 ~~~P~~-F~AVg~~Y~dF~  197 (220)
T COG1926         180 LYMPAP-FEAVGEFYRDFR  197 (220)
T ss_pred             EcCCcc-HHHHHHHHHHHh
Confidence            432221 455555554443

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=85.50  E-value=15  Score=32.34  Aligned_cols=116  Identities=14%  Similarity=0.025  Sum_probs=65.7

Q ss_pred             EcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEEEcCHHHHHHHHHHHHhhCC---CCceEEEEccCCChHHHHHHHHHH
Q psy4251          31 CTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFYQNCWDKANDAISKILTEKP---SAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        31 ItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      |.|+       +.+|..+|..++...... ..++..+.++++..+.+|....+   ...+.....   +.+       . 
T Consensus         4 IIGa-------G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~y~-------~-   65 (307)
T cd05290           4 VIGA-------GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---DYD-------D-   65 (307)
T ss_pred             EECC-------CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---CHH-------H-
Confidence            6777       689999966544332222 33445777778777777876432   113333322   222       2 


Q ss_pred             HHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         107 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       107 ~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                         ...-|++|.+||....+. .+. +....++.|    .-+++...|.+.+..+ .+.++++|...-
T Consensus        66 ---~~~aDivvitaG~~~kpg-~tr-~R~dll~~N----~~I~~~i~~~i~~~~p-~~i~ivvsNPvD  123 (307)
T cd05290          66 ---CADADIIVITAGPSIDPG-NTD-DRLDLAQTN----AKIIREIMGNITKVTK-EAVIILITNPLD  123 (307)
T ss_pred             ---hCCCCEEEECCCCCCCCC-CCc-hHHHHHHHH----HHHHHHHHHHHHHhCC-CeEEEEecCcHH
Confidence               245799999999864322 221 023344444    4566777777766553 277777776643

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=85.49  E-value=3.8  Score=29.94  Aligned_cols=67  Identities=7%  Similarity=0.060  Sum_probs=41.8

Q ss_pred             EcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHH
Q psy4251          31 CTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQK  108 (292)
Q Consensus        31 ItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~  108 (292)
                      |-|.       +.+|+.+++.   |.+.+  +.++.++++..+++.    +.    .+.++.+|.++++..+++-     
T Consensus         3 I~G~-------g~~~~~i~~~---L~~~~~~vvvid~d~~~~~~~~----~~----~~~~i~gd~~~~~~l~~a~-----   59 (116)
T PF02254_consen    3 IIGY-------GRIGREIAEQ---LKEGGIDVVVIDRDPERVEELR----EE----GVEVIYGDATDPEVLERAG-----   59 (116)
T ss_dssp             EES--------SHHHHHHHHH---HHHTTSEEEEEESSHHHHHHHH----HT----TSEEEES-TTSHHHHHHTT-----
T ss_pred             EEcC-------CHHHHHHHHH---HHhCCCEEEEEECCcHHHHHHH----hc----ccccccccchhhhHHhhcC-----
Confidence            7777       5799999554   54544  444557877755543    33    2678899999988877651     


Q ss_pred             hCCCccEEEEccc
Q psy4251         109 KFRSLNILVLNAG  121 (292)
Q Consensus       109 ~~~~id~lI~nAg  121 (292)
                       ..+.|.+|...+
T Consensus        60 -i~~a~~vv~~~~   71 (116)
T PF02254_consen   60 -IEKADAVVILTD   71 (116)
T ss_dssp             -GGCESEEEEESS
T ss_pred             -ccccCEEEEccC
Confidence             125677766544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=85.31  E-value=3.9  Score=42.01  Aligned_cols=81  Identities=10%  Similarity=0.053  Sum_probs=53.3

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--------EEEEcC-------------------HHHHHHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--------LFYQNC-------------------WDKANDAIS   75 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--------~v~~r~-------------------~~~~~~~~~   75 (292)
                      |...+++ |.|+       +|||-++   +..|+..|+        +|+..+                   ..|++.+++
T Consensus       417 L~~~kVl-vvGa-------GGlG~e~---lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~  485 (1008)
T TIGR01408       417 LQNLNIF-LVGC-------GAIGCEM---LKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAAD  485 (1008)
T ss_pred             HhhCcEE-EECC-------ChHHHHH---HHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHH
Confidence            4556777 8898       7999999   555555554        333211                   457888888


Q ss_pred             HHHhhCCCCceEEEEccCCChHHHHHHH-HHHHHhCCCccEEEEc
Q psy4251          76 KILTEKPSAQCIAMELDLCRLKSVKKFA-EEYQKKFRSLNILVLN  119 (292)
Q Consensus        76 ~l~~~~~~~~~~~~~~Dls~~~~v~~~~-~~~~~~~~~id~lI~n  119 (292)
                      .+++..|..++..+...++...+  .+. .++   +..+|+||++
T Consensus       486 ~l~~~Np~v~I~~~~~~v~~~~e--~i~~~~f---~~~~dvVi~a  525 (1008)
T TIGR01408       486 ATLKINPQIKIDAHQNRVGPETE--TIFNDEF---YEKLDVVINA  525 (1008)
T ss_pred             HHHHHCCCCEEEEEEeecChhhh--hhhhHHH---hhCCCEEEEC
Confidence            88888888888888887764321  121 222   2457888875

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=85.18  E-value=8  Score=35.30  Aligned_cols=114  Identities=11%  Similarity=0.003  Sum_probs=55.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE--EEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL--FYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~--v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .|++++ |.|+       ++||..++..+..   .|..  ++. ++.++.+.+ +++     +..    ..|..+..+..
T Consensus       185 ~g~~Vl-V~G~-------G~iG~~aiqlAk~---~Ga~~vi~~d~~~~r~~~a-~~~-----Ga~----~v~~~~~~~~~  243 (393)
T TIGR02819       185 PGSTVY-IAGA-------GPVGLAAAASAQL---LGAAVVIVGDLNPARLAQA-RSF-----GCE----TVDLSKDATLP  243 (393)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHH---cCCceEEEeCCCHHHHHHH-HHc-----CCe----EEecCCcccHH
Confidence            478888 7554       8999999665543   3443  222 455454332 222     332    12332222232


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +.+.++.. ...+|++|.+.|......  ..+....       ..-...+..+..++.  .  |+|++++..
T Consensus       244 ~~v~~~~~-~~g~Dvvid~~G~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~--~--G~i~~~G~~  301 (393)
T TIGR02819       244 EQIEQILG-EPEVDCAVDCVGFEARGH--GHDGKKE-------APATVLNSLMEVTRV--G--GAIGIPGLY  301 (393)
T ss_pred             HHHHHHcC-CCCCcEEEECCCCccccc--ccccccc-------chHHHHHHHHHHhhC--C--CEEEEeeec
Confidence            32333221 125999999999642100  1111110       121223444445543  3  999999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>KOG1196|consensus

Probab=85.11  E-value=6.9  Score=34.12  Aligned_cols=103  Identities=10%  Similarity=0.020  Sum_probs=61.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +|+|++ |+||+      +..|--+...+.   ..|+.|++  .+.++..-+..    .+......    |--++.++.+
T Consensus       153 ~geTv~-VSaAs------GAvGql~GQ~Ak---~~Gc~VVGsaGS~EKv~ll~~----~~G~d~af----NYK~e~~~~~  214 (343)
T KOG1196|consen  153 KGETVF-VSAAS------GAVGQLVGQFAK---LMGCYVVGSAGSKEKVDLLKT----KFGFDDAF----NYKEESDLSA  214 (343)
T ss_pred             CCCEEE-Eeecc------chhHHHHHHHHH---hcCCEEEEecCChhhhhhhHh----ccCCccce----eccCccCHHH
Confidence            468999 99999      888877644433   34567764  56666544333    32222222    2223334555


Q ss_pred             HHHHHHHhCC-CccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         102 FAEEYQKKFR-SLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       102 ~~~~~~~~~~-~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++.+   -++ .||+.+-|.|-.                        +..+.+-.|+..    |||+..+-++.+
T Consensus       215 aL~r---~~P~GIDiYfeNVGG~------------------------~lDavl~nM~~~----gri~~CG~ISqY  258 (343)
T KOG1196|consen  215 ALKR---CFPEGIDIYFENVGGK------------------------MLDAVLLNMNLH----GRIAVCGMISQY  258 (343)
T ss_pred             HHHH---hCCCcceEEEeccCcH------------------------HHHHHHHhhhhc----cceEeeeeehhc
Confidence            5444   344 699999999853                        345555556543    899998866544

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=84.97  E-value=6.2  Score=29.30  Aligned_cols=90  Identities=17%  Similarity=0.158  Sum_probs=49.3

Q ss_pred             cchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCC--CccEEEEcc
Q psy4251          43 GLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFR--SLNILVLNA  120 (292)
Q Consensus        43 GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~--~id~lI~nA  120 (292)
                      |||...+..++.++ ...+++.++.++.+-+ +++     +....   +|-++.+    +.+++++..+  .+|++|.|+
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~-~~~-----Ga~~~---~~~~~~~----~~~~i~~~~~~~~~d~vid~~   66 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELA-KEL-----GADHV---IDYSDDD----FVEQIRELTGGRGVDVVIDCV   66 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHH-HHT-----TESEE---EETTTSS----HHHHHHHHTTTSSEEEEEESS
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHH-Hhh-----ccccc---ccccccc----cccccccccccccceEEEEec
Confidence            57888866655443 3333345777665443 222     22222   3333333    4444444443  699999999


Q ss_pred             cccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         121 GVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       121 g~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      |..        +               ..+..+..+++  .  |+++.++...
T Consensus        67 g~~--------~---------------~~~~~~~~l~~--~--G~~v~vg~~~   92 (130)
T PF00107_consen   67 GSG--------D---------------TLQEAIKLLRP--G--GRIVVVGVYG   92 (130)
T ss_dssp             SSH--------H---------------HHHHHHHHEEE--E--EEEEEESSTS
T ss_pred             CcH--------H---------------HHHHHHHHhcc--C--CEEEEEEccC
Confidence            932        1               12333334443  3  8999998876

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=84.90  E-value=5  Score=34.75  Aligned_cols=39  Identities=8%  Similarity=0.014  Sum_probs=26.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKAND   72 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~   72 (292)
                      ++++++ |+|++      +++|.+++..   +...|..++.  ++.++.+.
T Consensus       144 ~~~~vl-i~g~~------~~~g~~~~~~---~~~~g~~v~~~~~~~~~~~~  184 (328)
T cd08268         144 PGDSVL-ITAAS------SSVGLAAIQI---ANAAGATVIATTRTSEKRDA  184 (328)
T ss_pred             CCCEEE-EecCc------cHHHHHHHHH---HHHcCCEEEEEcCCHHHHHH
Confidence            467787 99999      9999999555   4455666553  56555443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG0069|consensus

Probab=84.74  E-value=4.6  Score=35.90  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=51.2

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHH------HHHhhCCCCceEEEEccC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAIS------KILTEKPSAQCIAMELDL   93 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~------~l~~~~~~~~~~~~~~Dl   93 (292)
                      ..++.||++. |-|.       +.||.++|+.+..+. .......|.+...++..+      .+.+......+..+.|-+
T Consensus       157 g~~~~gK~vg-ilG~-------G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pL  227 (336)
T KOG0069|consen  157 GYDLEGKTVG-ILGL-------GRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPL  227 (336)
T ss_pred             cccccCCEEE-EecC-------cHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCC
Confidence            4678999999 9999       799999966655532 222222354433333211      122222234667777666


Q ss_pred             CChHHHHHHH-HHHHHhCCCccEEEEcc
Q psy4251          94 CRLKSVKKFA-EEYQKKFRSLNILVLNA  120 (292)
Q Consensus        94 s~~~~v~~~~-~~~~~~~~~id~lI~nA  120 (292)
                      +  ++.+.++ +++.++.++=-+|||+|
T Consensus       228 t--~~T~~liNk~~~~~mk~g~vlVN~a  253 (336)
T KOG0069|consen  228 T--KETRHLINKKFIEKMKDGAVLVNTA  253 (336)
T ss_pred             C--HHHHHHhhHHHHHhcCCCeEEEecc
Confidence            5  4455555 45555555445566655

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=84.71  E-value=12  Score=31.61  Aligned_cols=75  Identities=8%  Similarity=0.122  Sum_probs=51.6

Q ss_pred             ccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHH----------HHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHh
Q psy4251          42 TGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAI----------SKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKK  109 (292)
Q Consensus        42 ~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~----------~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~  109 (292)
                      -|+|+-.+..+.++...|+.+++  +|++..+++.          +++.+..+..+++++-+-..+.  +.++++++...
T Consensus         6 iGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~i--t~~vi~~la~~   83 (300)
T COG1023           6 IGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDI--TDAVIDDLAPL   83 (300)
T ss_pred             eccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCc--hHHHHHHHHhh
Confidence            37777777779999999999886  7766555543          4555555666777776555443  34677777766


Q ss_pred             CCCccEEEE
Q psy4251         110 FRSLNILVL  118 (292)
Q Consensus       110 ~~~id~lI~  118 (292)
                      ...=|+||-
T Consensus        84 L~~GDivID   92 (300)
T COG1023          84 LSAGDIVID   92 (300)
T ss_pred             cCCCCEEEE
Confidence            666788875

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=84.53  E-value=4.2  Score=35.97  Aligned_cols=31  Identities=13%  Similarity=-0.020  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ   64 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~   64 (292)
                      .|.+++ |+|++      +++|.++++.+..   .|+.|+.
T Consensus       162 ~g~~vl-I~g~~------g~ig~~~~~~a~~---~G~~v~~  192 (350)
T cd08248         162 AGKRVL-ILGGS------GGVGTFAIQLLKA---WGAHVTT  192 (350)
T ss_pred             CCCEEE-EECCC------ChHHHHHHHHHHH---CCCeEEE
Confidence            488998 99998      9999999666544   4445543

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=84.50  E-value=13  Score=34.62  Aligned_cols=113  Identities=13%  Similarity=0.045  Sum_probs=62.9

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhh-------cCcEE--EEc--CHHHHHHHHHHHHhhC-CCC-ceEEEEccC
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQ-------SSKLF--YQN--CWDKANDAISKILTEK-PSA-QCIAMELDL   93 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~-------~g~~v--~~r--~~~~~~~~~~~l~~~~-~~~-~~~~~~~Dl   93 (292)
                      +|. ||||+      +-||+.+   +..++.       +.+.+  +..  +.++++..+-+|.+.. |-. .+.+. .| 
T Consensus       125 ~V~-vtgAa------g~i~Y~l---~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~-  192 (452)
T cd05295         125 QVC-ITNAS------APLCYHL---IPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TD-  192 (452)
T ss_pred             EEE-EecCc------HHHHHHH---HHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-EC-
Confidence            466 99999      9999999   665543       11222  224  5778888888887643 211 12222 11 


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                       +.           +.+...|++|..||....+.    +.....++.|..    +.+...+.+.+..++..+|+.+.|
T Consensus       193 -~~-----------ea~~daDvvIitag~prk~G----~~R~DLL~~N~~----Ifk~~g~~I~~~a~~~~~VlVv~t  250 (452)
T cd05295         193 -LD-----------VAFKDAHVIVLLDDFLIKEG----EDLEGCIRSRVA----ICQLYGPLIEKNAKEDVKVIVAGR  250 (452)
T ss_pred             -CH-----------HHhCCCCEEEECCCCCCCcC----CCHHHHHHHHHH----HHHHHHHHHHHhCCCCCeEEEEeC
Confidence             11           12356899999999753221    234445555544    444444455444322246666664

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=84.45  E-value=3.5  Score=36.46  Aligned_cols=79  Identities=10%  Similarity=0.010  Sum_probs=41.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |+|+       +++|..++..+..+.....+++.++.++.+.+ .++     +...   ..|..+.+ .+++.
T Consensus       163 ~g~~vl-V~G~-------G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~-----ga~~---~i~~~~~~-~~~~~  224 (339)
T cd08239         163 GRDTVL-VVGA-------GPVGLGALMLARALGAEDVIGVDPSPERLELA-KAL-----GADF---VINSGQDD-VQEIR  224 (339)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-----CCCE---EEcCCcch-HHHHH
Confidence            378888 8875       79999996665544222122233666665433 333     2221   12333333 33332


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      + +.. ...+|++|.+.|.
T Consensus       225 ~-~~~-~~~~d~vid~~g~  241 (339)
T cd08239         225 E-LTS-GAGADVAIECSGN  241 (339)
T ss_pred             H-HhC-CCCCCEEEECCCC
Confidence            2 211 1269999998874

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=84.33  E-value=17  Score=32.14  Aligned_cols=118  Identities=11%  Similarity=-0.031  Sum_probs=65.1

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEEEcCHHHHHHHHHHHHhhCCCCc-eEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFYQNCWDKANDAISKILTEKPSAQ-CIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~~r~~~~~~~~~~~l~~~~~~~~-~~~~~~Dls~~~~v~~~~~  104 (292)
                      ++. |.|+       +.+|..+|..+....... ..++..+.++++..+.+|....+-.. ..+...  +|.+.      
T Consensus         5 Ki~-IiGa-------G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~dy~~------   68 (312)
T cd05293           5 KVT-VVGV-------GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KDYSV------   68 (312)
T ss_pred             EEE-EECC-------CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CCHHH------
Confidence            466 7886       799999966544332221 33344667777777777776532111 122211  12221      


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                           ...-|++|.+||....+ ..+   ....+..|    .-+.+.+.+.+.+.. +  +.++++|.....
T Consensus        69 -----~~~adivvitaG~~~k~-g~~---R~dll~~N----~~i~~~~~~~i~~~~p~--~~vivvsNP~d~  125 (312)
T cd05293          69 -----TANSKVVIVTAGARQNE-GES---RLDLVQRN----VDIFKGIIPKLVKYSPN--AILLVVSNPVDI  125 (312)
T ss_pred             -----hCCCCEEEECCCCCCCC-CCC---HHHHHHHH----HHHHHHHHHHHHHhCCC--cEEEEccChHHH
Confidence                 24579999999986432 122   23344444    344555555555443 4  888888876543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=84.20  E-value=4  Score=37.72  Aligned_cols=62  Identities=11%  Similarity=-0.001  Sum_probs=42.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEc----------C---------HHHHHHHHHHHHh
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQN----------C---------WDKANDAISKILT   79 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r----------~---------~~~~~~~~~~l~~   79 (292)
                      .|...+|+ |.|+       +|+|-++   +..|+..|+   +|+..          +         ..+++.+.+.|.+
T Consensus        17 ~L~~s~Vl-liG~-------gglGsEi---lKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~e   85 (425)
T cd01493          17 ALESAHVC-LLNA-------TATGTEI---LKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQE   85 (425)
T ss_pred             HHhhCeEE-EEcC-------cHHHHHH---HHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHH
Confidence            35566788 6787       6999999   555555554   44321          1         4577888888998


Q ss_pred             hCCCCceEEEEccCC
Q psy4251          80 EKPSAQCIAMELDLC   94 (292)
Q Consensus        80 ~~~~~~~~~~~~Dls   94 (292)
                      .+|..++.++.-++.
T Consensus        86 LNp~V~i~~~~e~~~  100 (425)
T cd01493          86 LNPDVNGSAVEESPE  100 (425)
T ss_pred             HCCCCEEEEEecccc
Confidence            888777777765443

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=84.10  E-value=5.7  Score=34.39  Aligned_cols=39  Identities=13%  Similarity=0.041  Sum_probs=26.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKAND   72 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~   72 (292)
                      .|.+++ |.|++      +++|.++++.+...   |+.|+  .++.++.+.
T Consensus       142 ~g~~vl-V~ga~------g~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~  182 (320)
T cd08243         142 PGDTLL-IRGGT------SSVGLAALKLAKAL---GATVTATTRSPERAAL  182 (320)
T ss_pred             CCCEEE-EEcCC------ChHHHHHHHHHHHc---CCEEEEEeCCHHHHHH
Confidence            477888 99999      99999996665544   45554  356555433

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=83.78  E-value=5.9  Score=35.57  Aligned_cols=79  Identities=13%  Similarity=-0.048  Sum_probs=42.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh-HHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRL-KSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~  102 (292)
                      .|.+++ |.|+       +++|..++..+..++....+++.++.++.+.+ +++     +... ++  |..+. +++.+.
T Consensus       187 ~g~~Vl-V~G~-------g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~-----Ga~~-~i--~~~~~~~~~~~~  249 (369)
T cd08301         187 KGSTVA-IFGL-------GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKF-----GVTE-FV--NPKDHDKPVQEV  249 (369)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc-----CCce-EE--cccccchhHHHH
Confidence            477888 7775       89999997765543221222334666665433 222     2221 11  22221 233343


Q ss_pred             HHHHHHhCCCccEEEEccc
Q psy4251         103 AEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg  121 (292)
                      +.++..  +.+|+++.+.|
T Consensus       250 v~~~~~--~~~d~vid~~G  266 (369)
T cd08301         250 IAEMTG--GGVDYSFECTG  266 (369)
T ss_pred             HHHHhC--CCCCEEEECCC
Confidence            333332  26999999887

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=83.78  E-value=4.3  Score=34.01  Aligned_cols=72  Identities=8%  Similarity=0.073  Sum_probs=49.6

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .++ |-|+       +-+|..+   +..|.+.|+.|+  .++.++.++..++      ......+++|-++++-++++  
T Consensus         2 ~ii-IiG~-------G~vG~~v---a~~L~~~g~~Vv~Id~d~~~~~~~~~~------~~~~~~v~gd~t~~~~L~~a--   62 (225)
T COG0569           2 KII-IIGA-------GRVGRSV---ARELSEEGHNVVLIDRDEERVEEFLAD------ELDTHVVIGDATDEDVLEEA--   62 (225)
T ss_pred             EEE-EECC-------cHHHHHH---HHHHHhCCCceEEEEcCHHHHHHHhhh------hcceEEEEecCCCHHHHHhc--
Confidence            456 7888       6889999   666777776665  4888777664432      12678889999998776665  


Q ss_pred             HHHHhCCCccEEEEccc
Q psy4251         105 EYQKKFRSLNILVLNAG  121 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg  121 (292)
                          -....|++|-.-|
T Consensus        63 ----gi~~aD~vva~t~   75 (225)
T COG0569          63 ----GIDDADAVVAATG   75 (225)
T ss_pred             ----CCCcCCEEEEeeC
Confidence                1125688877655

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=83.71  E-value=2.3  Score=37.11  Aligned_cols=41  Identities=7%  Similarity=-0.082  Sum_probs=29.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKAND   72 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~   72 (292)
                      .+++|++++ |.|.       +++|+++|+.+.   ..|..|.  .|+.++.+.
T Consensus       147 ~~l~gk~v~-IiG~-------G~iG~avA~~L~---~~G~~V~v~~R~~~~~~~  189 (287)
T TIGR02853       147 FTIHGSNVM-VLGF-------GRTGMTIARTFS---ALGARVFVGARSSADLAR  189 (287)
T ss_pred             CCCCCCEEE-EEcC-------hHHHHHHHHHHH---HCCCEEEEEeCCHHHHHH
Confidence            478899999 9999       689999966654   4454544  477665433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=83.70  E-value=24  Score=32.76  Aligned_cols=78  Identities=10%  Similarity=0.014  Sum_probs=44.1

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |++++=+..|+      ++....+   +..+...+.++.+ .+.+..+.+.+.+.... -.++.++..|..+...     
T Consensus       251 g~~VLDlgaG~------G~~t~~l---a~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~~v~~~~~D~~~~~~-----  315 (444)
T PRK14902        251 GDTVLDACAAP------GGKTTHI---AELLKNTGKVVALDIHEHKLKLIEENAKRLG-LTNIETKALDARKVHE-----  315 (444)
T ss_pred             CCEEEEeCCCC------CHHHHHH---HHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEeCCcccccc-----
Confidence            55666233344      5555555   3333234433333 67777777777775542 2358888889876321     


Q ss_pred             HHHHHhCCCccEEEEccc
Q psy4251         104 EEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg  121 (292)
                       .+.   +.+|.++.++-
T Consensus       316 -~~~---~~fD~Vl~D~P  329 (444)
T PRK14902        316 -KFA---EKFDKILVDAP  329 (444)
T ss_pred             -hhc---ccCCEEEEcCC
Confidence             111   46899998764

>PLN02827 Alcohol dehydrogenase-like

Probab=83.53  E-value=6  Score=35.84  Aligned_cols=77  Identities=9%  Similarity=-0.013  Sum_probs=42.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh-HHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL-KSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v   99 (292)
                      .|.+++ |.|+       +++|..++..+..+   |. .|+  .++.++.+.+ +++     +... +  .|..+. ++.
T Consensus       193 ~g~~Vl-V~G~-------G~vG~~~iqlak~~---G~~~vi~~~~~~~~~~~a-~~l-----Ga~~-~--i~~~~~~~~~  252 (378)
T PLN02827        193 KGSSVV-IFGL-------GTVGLSVAQGAKLR---GASQIIGVDINPEKAEKA-KTF-----GVTD-F--INPNDLSEPI  252 (378)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHH-HHc-----CCcE-E--EcccccchHH
Confidence            478888 8885       79999996665543   44 233  3566554432 333     2221 1  233221 233


Q ss_pred             HHHHHHHHHhCCCccEEEEcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.+.++..  +.+|++|.+.|.
T Consensus       253 ~~~v~~~~~--~g~d~vid~~G~  273 (378)
T PLN02827        253 QQVIKRMTG--GGADYSFECVGD  273 (378)
T ss_pred             HHHHHHHhC--CCCCEEEECCCC
Confidence            333333322  269999999884

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=83.31  E-value=2.1  Score=38.06  Aligned_cols=75  Identities=8%  Similarity=-0.061  Sum_probs=46.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhh-cCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQ-SSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~-~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .+++. |-|+       ++.|+..++.+..... ..+.|+.|+.+++++.++++.+.. +  +.+..  ..+   +++.+
T Consensus       129 ~~~v~-iiGa-------G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g--~~v~~--~~~---~~~av  192 (326)
T TIGR02992       129 SSVVA-IFGA-------GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-G--IDVTA--ATD---PRAAM  192 (326)
T ss_pred             CcEEE-EECC-------CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-C--ceEEE--eCC---HHHHh
Confidence            46677 8898       6889888665443222 345566799999999999886543 1  22222  122   22222


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                             ...|+||++-..
T Consensus       193 -------~~aDiVvtaT~s  204 (326)
T TIGR02992       193 -------SGADIIVTTTPS  204 (326)
T ss_pred             -------ccCCEEEEecCC
Confidence                   247999987654

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=83.16  E-value=6.5  Score=35.50  Aligned_cols=79  Identities=15%  Similarity=0.090  Sum_probs=40.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH-HHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK-SVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~-~v~~~  102 (292)
                      .|.+++ |.|+       +++|.+++..+..++....+++.++.++.+.+ .++     +.. .+  .+..+.+ +..+.
T Consensus       190 ~g~~Vl-V~G~-------g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a-~~l-----Ga~-~~--i~~~~~~~~~~~~  252 (373)
T cd08299         190 PGSTCA-VFGL-------GGVGLSAIMGCKAAGASRIIAVDINKDKFAKA-KEL-----GAT-EC--INPQDYKKPIQEV  252 (373)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc-----CCc-eE--ecccccchhHHHH
Confidence            467788 7764       89999996665544221223334666665444 333     221 11  1222211 12333


Q ss_pred             HHHHHHhCCCccEEEEccc
Q psy4251         103 AEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg  121 (292)
                      +.++..  +.+|+++.+.|
T Consensus       253 v~~~~~--~~~d~vld~~g  269 (373)
T cd08299         253 LTEMTD--GGVDFSFEVIG  269 (373)
T ss_pred             HHHHhC--CCCeEEEECCC
Confidence            333322  36999999887

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=83.06  E-value=6.1  Score=36.20  Aligned_cols=88  Identities=8%  Similarity=-0.018  Sum_probs=44.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhC--CCCceEEEEccCCChHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEK--PSAQCIAMELDLCRLKS   98 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~   98 (292)
                      .|.+++ |.|++      +++|..++..+..++ .|. .|+  .++.++.+.+.+.+....  .+....  ..|-.+.++
T Consensus       175 ~g~~Vl-V~G~~------G~vG~~aiq~ak~~G-~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~--~i~~~~~~~  244 (410)
T cd08238         175 PGGNTA-ILGGA------GPMGLMAIDYAIHGP-IGPSLLVVTDVNDERLARAQRLFPPEAASRGIELL--YVNPATIDD  244 (410)
T ss_pred             CCCEEE-EEeCC------CHHHHHHHHHHHhcc-cCCceEEEEcCCHHHHHHHHHhccccccccCceEE--EECCCcccc
Confidence            467888 89988      999999966655442 221 233  467777665443211000  011111  223322223


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      ..+.+.++.. ...+|++|.+.|.
T Consensus       245 ~~~~v~~~t~-g~g~D~vid~~g~  267 (410)
T cd08238         245 LHATLMELTG-GQGFDDVFVFVPV  267 (410)
T ss_pred             HHHHHHHHhC-CCCCCEEEEcCCC
Confidence            3333333321 1258999988763

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=82.75  E-value=9.5  Score=33.66  Aligned_cols=114  Identities=16%  Similarity=0.137  Sum_probs=60.4

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ++. |+|++      +.+|..+   +..+...+.  .++  ..+  +++..+-+|.+..+..++.....   + +     
T Consensus         2 KI~-IIGaa------G~VG~~~---a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~---~-~-----   60 (310)
T cd01337           2 KVA-VLGAA------GGIGQPL---SLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLG---P-E-----   60 (310)
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecC---C-C-----
Confidence            456 88998      8999999   444555552  333  334  44444444544321111111100   0 0     


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSES  173 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~  173 (292)
                        ++.+.+..-|++|.+||....+.    +.-...++.|.--.    +...+.+.+. +.  +.|+++|...
T Consensus        61 --~~y~~~~daDivvitaG~~~k~g----~tR~dll~~N~~i~----~~i~~~i~~~~p~--a~vivvtNPv  120 (310)
T cd01337          61 --ELKKALKGADVVVIPAGVPRKPG----MTRDDLFNINAGIV----RDLATAVAKACPK--ALILIISNPV  120 (310)
T ss_pred             --chHHhcCCCCEEEEeCCCCCCCC----CCHHHHHHHHHHHH----HHHHHHHHHhCCC--eEEEEccCch
Confidence              11222356899999999853321    23445566665444    4444444433 34  8888888875

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=82.65  E-value=9.2  Score=32.47  Aligned_cols=77  Identities=10%  Similarity=-0.038  Sum_probs=43.9

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHh------h--cCcEEEE--cC------------------HHHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLV------Q--SSKLFYQ--NC------------------WDKANDAISK   76 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~------~--~g~~v~~--r~------------------~~~~~~~~~~   76 (292)
                      ..+++ |.|+       +|+|-.+++.+.+++      .  .|..|..  .|                  ..|++.++++
T Consensus        11 ~~~V~-vvG~-------GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~r   82 (244)
T TIGR03736        11 PVSVV-LVGA-------GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNR   82 (244)
T ss_pred             CCeEE-EEcC-------ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHH
Confidence            44677 9999       799999966655442      1  1223322  21                  3466666666


Q ss_pred             HHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          77 ILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        77 l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +...+ +.++..+...+...+    +   +    .+.|++|.|..
T Consensus        83 i~~~~-~~~i~a~~~~~~~~~----~---~----~~~DiVi~avD  115 (244)
T TIGR03736        83 LNQAM-GTDWTAHPERVERSS----T---L----HRPDIVIGCVD  115 (244)
T ss_pred             HHhcc-CceEEEEEeeeCchh----h---h----cCCCEEEECCC
Confidence            66544 456666666555411    1   1    24777777654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=82.59  E-value=7.7  Score=34.46  Aligned_cols=82  Identities=12%  Similarity=0.056  Sum_probs=41.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH---HHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK---SVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~---~v~  100 (292)
                      .|.+++ |.|++      +++|.++++.+..+......+...+.++.+ .++++     +... ++  |..+..   ...
T Consensus       151 ~g~~vl-I~ga~------~~vg~~~~~~a~~~~~~~~v~~~~~~~~~~-~~~~~-----g~~~-~i--~~~~~~~~~~~~  214 (352)
T cd08247         151 PDSKVL-VLGGS------TSVGRFAIQLAKNHYNIGTVVGTCSSRSAE-LNKKL-----GADH-FI--DYDAHSGVKLLK  214 (352)
T ss_pred             CCCeEE-EECCC------chHHHHHHHHHHhcCCcceEEEEeChhHHH-HHHHh-----CCCE-EE--ecCCCcccchHH
Confidence            477888 99999      999999966655332211223334444432 22222     2222 22  222222   233


Q ss_pred             HHHHHHHHhCCCccEEEEcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.+... ..+.+|+++.+.|.
T Consensus       215 ~~~~~~~-~~~~~d~vl~~~g~  235 (352)
T cd08247         215 PVLENVK-GQGKFDLILDCVGG  235 (352)
T ss_pred             HHHHhhc-CCCCceEEEECCCC
Confidence            3333321 12369999998773

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised

Probab=82.55  E-value=2  Score=33.61  Aligned_cols=42  Identities=12%  Similarity=0.104  Sum_probs=35.1

Q ss_pred             EEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhh
Q psy4251          30 LCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTE   80 (292)
Q Consensus        30 lItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~   80 (292)
                      |++|++      +-+|+++   +..|-++|+.|+.-+.+.-+.+..++...
T Consensus         2 ~L~G~~------sKvarai---A~~LC~rgv~V~m~~~~~y~~lk~~~~~~   43 (164)
T PF12076_consen    2 FLTGNT------SKVARAI---ALALCRRGVQVVMLSKERYESLKSEAPEE   43 (164)
T ss_pred             eecccc------cHHHHHH---HHHHHhcCCEEEEecHHHHHHHHHHcCHH
Confidence            489999      9999999   88899999999987877777777666443

This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].

>KOG0025|consensus

Probab=82.21  E-value=5.1  Score=34.78  Aligned_cols=83  Identities=12%  Similarity=0.042  Sum_probs=55.4

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      |-+++ =-||+      ++.|.++...+..++-..+. ++||.+..+++.++|.+.  +..-++-+-.+.+     .-..
T Consensus       161 GD~vI-QNgan------S~VG~~ViQlaka~Giktin-vVRdR~~ieel~~~Lk~l--GA~~ViTeeel~~-----~~~~  225 (354)
T KOG0025|consen  161 GDSVI-QNGAN------SGVGQAVIQLAKALGIKTIN-VVRDRPNIEELKKQLKSL--GATEVITEEELRD-----RKMK  225 (354)
T ss_pred             CCeee-ecCcc------cHHHHHHHHHHHHhCcceEE-EeecCccHHHHHHHHHHc--CCceEecHHHhcc-----hhhh
Confidence            66777 88999      99999997777666444333 358888888888888875  4444443333332     2222


Q ss_pred             HHHHhCCCccEEEEcccc
Q psy4251         105 EYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~  122 (292)
                      .....++++..-+||.|-
T Consensus       226 k~~~~~~~prLalNcVGG  243 (354)
T KOG0025|consen  226 KFKGDNPRPRLALNCVGG  243 (354)
T ss_pred             hhhccCCCceEEEeccCc
Confidence            233356789999999884

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=82.19  E-value=4.9  Score=35.30  Aligned_cols=78  Identities=14%  Similarity=0.115  Sum_probs=41.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+..++|++||+      +++|..++..+..+   |..|+  .++.++.+.+.+ +     +... ++  |..+.+..+.
T Consensus       142 ~~~~vlv~~~g~------g~vG~~a~q~a~~~---G~~vi~~~~~~~~~~~~~~-~-----g~~~-~i--~~~~~~~~~~  203 (324)
T cd08291         142 EGAKAVVHTAAA------SALGRMLVRLCKAD---GIKVINIVRRKEQVDLLKK-I-----GAEY-VL--NSSDPDFLED  203 (324)
T ss_pred             CCCcEEEEccCc------cHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHH-c-----CCcE-EE--ECCCccHHHH
Confidence            455566477888      99999996665543   44444  466666544332 2     2222 22  2222222222


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      + .++.. ...+|+++.+.|
T Consensus       204 v-~~~~~-~~~~d~vid~~g  221 (324)
T cd08291         204 L-KELIA-KLNATIFFDAVG  221 (324)
T ss_pred             H-HHHhC-CCCCcEEEECCC
Confidence            2 22211 125999999887

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=82.14  E-value=5.8  Score=34.56  Aligned_cols=77  Identities=16%  Similarity=0.094  Sum_probs=42.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+|++      +++|.+++..+..+   |..|+  .++.++.+.+ +++     +... +  .|..+.+..+.
T Consensus       142 ~~~~vl-I~g~~------~~~g~~~~~la~~~---g~~v~~~~~~~~~~~~~-~~~-----g~~~-~--~~~~~~~~~~~  202 (324)
T cd08244         142 PGDVVL-VTAAA------GGLGSLLVQLAKAA---GATVVGAAGGPAKTALV-RAL-----GADV-A--VDYTRPDWPDQ  202 (324)
T ss_pred             CCCEEE-EEcCC------chHHHHHHHHHHHC---CCEEEEEeCCHHHHHHH-HHc-----CCCE-E--EecCCccHHHH
Confidence            366777 99999      99999996665544   45554  3566554433 322     2221 1  23333333333


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+..  ....+|+++.+.|
T Consensus       203 ~~~~~--~~~~~d~vl~~~g  220 (324)
T cd08244         203 VREAL--GGGGVTVVLDGVG  220 (324)
T ss_pred             HHHHc--CCCCceEEEECCC
Confidence            22211  1125999999877

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli

Probab=81.98  E-value=18  Score=28.80  Aligned_cols=63  Identities=10%  Similarity=0.117  Sum_probs=47.2

Q ss_pred             hcCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEE-ccCCChHHHHHHHHHHHHhCCCccEEEEcccc
Q psy4251          57 QSSKLF--YQNCWDKANDAISKILTEKPSAQCIAME-LDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        57 ~~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~-~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      ..+..|  ++.+++.++++.+.+++.+|+.++.... .-. +.++.+++++.|.+.  +.|+|+..-|.
T Consensus        46 ~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-~~~~~~~i~~~I~~~--~pdiv~vglG~  111 (172)
T PF03808_consen   46 QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-DEEEEEAIINRINAS--GPDIVFVGLGA  111 (172)
T ss_pred             HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-ChhhHHHHHHHHHHc--CCCEEEEECCC
Confidence            344444  4578888999999999999877776543 334 777888888888765  57999988775

Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=81.90  E-value=5.4  Score=35.17  Aligned_cols=119  Identities=16%  Similarity=0.083  Sum_probs=63.9

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEEEcCHHHHHHHHHHHHhhCCCC-ceEEEEccCCChHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFYQNCWDKANDAISKILTEKPSA-QCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~Dls~~~~v~~~~  103 (292)
                      .+. |+|+       +++|..+|..+... .-+  ..++...+++++..+.+|....+.. .-..+..| .+.++     
T Consensus         2 KVa-viGa-------G~VG~s~a~~l~~~-~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~y~~-----   66 (313)
T COG0039           2 KVA-VIGA-------GNVGSSLAFLLLLQ-GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GDYED-----   66 (313)
T ss_pred             eEE-EECC-------ChHHHHHHHHHhcc-cccceEEEEEcccccccchhcchhhcchhccCceEEecC-CChhh-----
Confidence            466 8898       79999996654222 222  3344566666666666665432211 11222222 22222     


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                            +..-|++|.+||....+. ++.   ...+..|..    +.+.+.+.+.+..+ .+.|+.+|...-.
T Consensus        67 ------~~~aDiVvitAG~prKpG-mtR---~DLl~~Na~----I~~~i~~~i~~~~~-d~ivlVvtNPvD~  123 (313)
T COG0039          67 ------LKGADIVVITAGVPRKPG-MTR---LDLLEKNAK----IVKDIAKAIAKYAP-DAIVLVVTNPVDI  123 (313)
T ss_pred             ------hcCCCEEEEeCCCCCCCC-CCH---HHHHHhhHH----HHHHHHHHHHhhCC-CeEEEEecCcHHH
Confidence                  245799999999864333 232   334555543    44444445544432 1778887776443

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=81.65  E-value=16  Score=32.58  Aligned_cols=89  Identities=8%  Similarity=0.057  Sum_probs=51.1

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHH---HHHHHhhCCCCceEEEEccCC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDA---ISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~---~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      ...|.|+++. |.|.       +.||..+|+.   +...|..|++  ++.+.....   ...+.+......+.++.+-++
T Consensus       141 ~~~l~g~~Vg-IIG~-------G~IG~~vA~~---L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t  209 (330)
T PRK12480        141 SKPVKNMTVA-IIGT-------GRIGAATAKI---YAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPAN  209 (330)
T ss_pred             ccccCCCEEE-EECC-------CHHHHHHHHH---HHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCc
Confidence            3578999988 8888       6899999554   5566777764  554332211   112333333456777777665


Q ss_pred             ChHHHHHH-HHHHHHhCCCccEEEEcccc
Q psy4251          95 RLKSVKKF-AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        95 ~~~~v~~~-~~~~~~~~~~id~lI~nAg~  122 (292)
                      ..  +..+ .++..+..+ -+.++-|.|.
T Consensus       210 ~~--t~~li~~~~l~~mk-~gavlIN~aR  235 (330)
T PRK12480        210 KE--SYHLFDKAMFDHVK-KGAILVNAAR  235 (330)
T ss_pred             HH--HHHHHhHHHHhcCC-CCcEEEEcCC
Confidence            42  3333 344444443 4556666654

>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins

Probab=81.58  E-value=17  Score=28.89  Aligned_cols=76  Identities=9%  Similarity=0.047  Sum_probs=50.0

Q ss_pred             hhhHHHHHHHHhh-cCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEE-EccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          45 KKKDGNLCFDLVQ-SSKLF--YQNCWDKANDAISKILTEKPSAQCIAM-ELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        45 G~~~a~~~~~l~~-~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      |..+...+.+.+. .+..|  ++.+++.++++.+.+++.+|+.++... ..-.. .++..++++.|.+.  ..|+|+..-
T Consensus        31 g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~~~~~i~~~I~~~--~pdiv~vgl  107 (171)
T cd06533          31 GSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFG-PEEEEEIIERINAS--GADILFVGL  107 (171)
T ss_pred             cHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCC-hhhHHHHHHHHHHc--CCCEEEEEC
Confidence            3334443444443 35444  457888999999999999998887764 34443 34444577777664  589999887


Q ss_pred             ccc
Q psy4251         121 GVF  123 (292)
Q Consensus       121 g~~  123 (292)
                      |..
T Consensus       108 G~P  110 (171)
T cd06533         108 GAP  110 (171)
T ss_pred             CCC
Confidence            753

E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=81.58  E-value=4.2  Score=32.56  Aligned_cols=43  Identities=9%  Similarity=-0.045  Sum_probs=29.7

Q ss_pred             cCCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH
Q psy4251          15 KLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD   68 (292)
Q Consensus        15 ~~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~   68 (292)
                      +......++.|+++. |.|.       +.||+++|+.   +..-|..|++  |+..
T Consensus        26 ~~~~~~~~l~g~tvg-IiG~-------G~IG~~vA~~---l~~fG~~V~~~d~~~~   70 (178)
T PF02826_consen   26 RERFPGRELRGKTVG-IIGY-------GRIGRAVARR---LKAFGMRVIGYDRSPK   70 (178)
T ss_dssp             HTTTTBS-STTSEEE-EEST-------SHHHHHHHHH---HHHTT-EEEEEESSCH
T ss_pred             CcCCCccccCCCEEE-EEEE-------cCCcCeEeee---eecCCceeEEecccCC
Confidence            345556889999999 8888       7999999555   4466666664  5543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=81.57  E-value=5.7  Score=35.74  Aligned_cols=79  Identities=15%  Similarity=0.019  Sum_probs=40.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|++++ |.|+       +++|..++..+..++...++++.++.++.+-+ +++     +... +  .|..+.+..+. +
T Consensus       191 ~g~~Vl-V~G~-------G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~-----Ga~~-~--i~~~~~~~~~~-i  252 (371)
T cd08281         191 PGQSVA-VVGL-------GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-REL-----GATA-T--VNAGDPNAVEQ-V  252 (371)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHc-----CCce-E--eCCCchhHHHH-H
Confidence            477888 8885       79999986655433221222234666665433 333     2221 1  23333222222 2


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      .++.  .+.+|++|.+.|.
T Consensus       253 ~~~~--~~g~d~vid~~G~  269 (371)
T cd08281         253 RELT--GGGVDYAFEMAGS  269 (371)
T ss_pred             HHHh--CCCCCEEEECCCC
Confidence            2221  1369999998873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=81.50  E-value=4.5  Score=35.31  Aligned_cols=39  Identities=10%  Similarity=-0.136  Sum_probs=26.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKAND   72 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~   72 (292)
                      .|.+++ |.|++      +++|.++++.+..+   |+.++  .++.++.+.
T Consensus       139 ~g~~vl-I~g~~------g~ig~~~~~~a~~~---G~~v~~~~~~~~~~~~  179 (324)
T cd08292         139 PGQWLI-QNAAG------GAVGKLVAMLAAAR---GINVINLVRRDAGVAE  179 (324)
T ss_pred             CCCEEE-Ecccc------cHHHHHHHHHHHHC---CCeEEEEecCHHHHHH
Confidence            467788 99999      99999996665544   44444  455555433

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=81.42  E-value=43  Score=30.67  Aligned_cols=91  Identities=9%  Similarity=0.085  Sum_probs=49.4

Q ss_pred             EcCHHHHHHHHHHHHhhCCC-CceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhh
Q psy4251          64 QNCWDKANDAISKILTEKPS-AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNH  142 (292)
Q Consensus        64 ~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~  142 (292)
                      ..+...++.+.+.+....-. .++.++.+|+-+      +..+.....++.|+||.|.=.+..    +.+.    +..-.
T Consensus       250 D~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~------~l~~~~~~~~~fDlVilDPP~f~~----~k~~----l~~~~  315 (396)
T PRK15128        250 DTSQEALDIARQNVELNKLDLSKAEFVRDDVFK------LLRTYRDRGEKFDVIVMDPPKFVE----NKSQ----LMGAC  315 (396)
T ss_pred             ECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHH------HHHHHHhcCCCCCEEEECCCCCCC----ChHH----HHHHH
Confidence            37777777776666543112 368888988742      333333333479999988665422    1111    11112


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         143 LAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       143 ~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      .+...+.+...+.++  ++  |.++..|++
T Consensus       316 ~~y~~l~~~a~~lLk--~g--G~lv~~scs  341 (396)
T PRK15128        316 RGYKDINMLAIQLLN--PG--GILLTFSCS  341 (396)
T ss_pred             HHHHHHHHHHHHHcC--CC--eEEEEEeCC
Confidence            233445555666665  33  677766654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=81.11  E-value=3.5  Score=32.88  Aligned_cols=33  Identities=12%  Similarity=0.032  Sum_probs=23.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY   63 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~   63 (292)
                      .+|.|++++ |.|++      .=+|..+++   .|.+.|+.|.
T Consensus        40 ~~l~gk~vl-ViG~G------~~~G~~~a~---~L~~~g~~V~   72 (168)
T cd01080          40 IDLAGKKVV-VVGRS------NIVGKPLAA---LLLNRNATVT   72 (168)
T ss_pred             CCCCCCEEE-EECCc------HHHHHHHHH---HHhhCCCEEE
Confidence            578999999 99984      335888844   4555665544

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=81.10  E-value=9.7  Score=32.70  Aligned_cols=39  Identities=13%  Similarity=0.003  Sum_probs=26.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKAND   72 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~   72 (292)
                      .|++++ |.|++      +++|.++++.+..+   |..|++  ++.++.+.
T Consensus       136 ~g~~vl-I~g~~------g~~g~~~~~~a~~~---g~~v~~~~~~~~~~~~  176 (320)
T cd05286         136 PGDTVL-VHAAA------GGVGLLLTQWAKAL---GATVIGTVSSEEKAEL  176 (320)
T ss_pred             CCCEEE-EEcCC------chHHHHHHHHHHHc---CCEEEEEcCCHHHHHH
Confidence            477888 99998      99999996665544   555553  55555443

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=81.04  E-value=2  Score=31.00  Aligned_cols=33  Identities=9%  Similarity=0.017  Sum_probs=21.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ   64 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~   64 (292)
                      .+++|+.++ |.|+          |....+.+..|.+.|+.|.+
T Consensus         3 l~l~~~~vl-VvGg----------G~va~~k~~~Ll~~gA~v~v   35 (103)
T PF13241_consen    3 LDLKGKRVL-VVGG----------GPVAARKARLLLEAGAKVTV   35 (103)
T ss_dssp             E--TT-EEE-EEEE----------SHHHHHHHHHHCCCTBEEEE
T ss_pred             EEcCCCEEE-EECC----------CHHHHHHHHHHHhCCCEEEE
Confidence            468999999 7777          33444457888888888765

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=80.84  E-value=4.8  Score=41.42  Aligned_cols=62  Identities=13%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC-------------------HHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC-------------------WDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~-------------------~~~~~~~~~~l~   78 (292)
                      ..|...+|+ |.|.       +|+|-++|+   .|+..|+   +|+..+                   ..+++.+.++|+
T Consensus        20 ~kL~~s~VL-IiG~-------gGLG~EiaK---nL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~   88 (1008)
T TIGR01408        20 QKMAKSNVL-ISGM-------GGLGLEIAK---NLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLA   88 (1008)
T ss_pred             HHHhhCcEE-EECC-------CHHHHHHHH---HHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHH
Confidence            346667788 8898       799999944   4555553   332211                   358888999999


Q ss_pred             hhCCCCceEEEEccC
Q psy4251          79 TEKPSAQCIAMELDL   93 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dl   93 (292)
                      +.+|..++..+..++
T Consensus        89 eLNp~V~V~~~~~~l  103 (1008)
T TIGR01408        89 ELNPYVHVSSSSVPF  103 (1008)
T ss_pred             HHCCCceEEEecccC
Confidence            998877777776555

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=80.82  E-value=7.8  Score=34.61  Aligned_cols=37  Identities=8%  Similarity=-0.065  Sum_probs=24.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKAN   71 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~   71 (292)
                      .|++++ |+| +      +++|.+++..+..+   |+ .|+  .++.++.+
T Consensus       177 ~g~~vl-I~g-~------g~vG~~~~~lak~~---G~~~v~~~~~~~~~~~  216 (361)
T cd08231         177 AGDTVV-VQG-A------GPLGLYAVAAAKLA---GARRVIVIDGSPERLE  216 (361)
T ss_pred             CCCEEE-EEC-C------CHHHHHHHHHHHHc---CCCeEEEEcCCHHHHH
Confidence            577888 887 5      89999997765554   44 444  35555543

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=80.78  E-value=6  Score=29.63  Aligned_cols=74  Identities=9%  Similarity=0.080  Sum_probs=47.9

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCH----------------------HHHHHHHHHHHhhCC
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCW----------------------DKANDAISKILTEKP   82 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~----------------------~~~~~~~~~l~~~~~   82 (292)
                      ++ |.|++      +-+|+++++.+.+  ..++.++.   |+.                      +.++++.++      
T Consensus         3 V~-i~G~~------GrMG~~i~~~i~~--~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~------   67 (124)
T PF01113_consen    3 VG-IVGAS------GRMGRAIAEAILE--SPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE------   67 (124)
T ss_dssp             EE-EETTT------SHHHHHHHHHHHH--STTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH------
T ss_pred             EE-EECCC------CHHHHHHHHHHHh--cCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc------
Confidence            55 99999      9999999665443  25666542   443                      122222221      


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccc
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                          .-+-.|.|.++.+.+.++...+.  ++.+|+-+.|+
T Consensus        68 ----~DVvIDfT~p~~~~~~~~~~~~~--g~~~ViGTTG~  101 (124)
T PF01113_consen   68 ----ADVVIDFTNPDAVYDNLEYALKH--GVPLVIGTTGF  101 (124)
T ss_dssp             -----SEEEEES-HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred             ----CCEEEEcCChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence                11567999999999999998877  68899988886

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06153 hypothetical protein; Provisional

Probab=80.76  E-value=9.4  Score=34.69  Aligned_cols=82  Identities=10%  Similarity=0.022  Sum_probs=48.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC--------------------H--HHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC--------------------W--DKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~--------------------~--~~~~~~~~~l~   78 (292)
                      ..|++++++ |.|+       +|+|-.++..+.+++-..++++..+                    .  .|.+.+.+.+.
T Consensus       172 ~kL~~~~Va-IVG~-------GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~  243 (393)
T PRK06153        172 AKLEGQRIA-IIGL-------GGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS  243 (393)
T ss_pred             HHHhhCcEE-EEcC-------CccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence            357788899 9999       7999999555554433333443211                    1  35555666666


Q ss_pred             hhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +..  ..+..+...+ +.+.+.    .    +...|++|.|..
T Consensus       244 ~in--~~I~~~~~~I-~~~n~~----~----L~~~DiV~dcvD  275 (393)
T PRK06153        244 NMR--RGIVPHPEYI-DEDNVD----E----LDGFTFVFVCVD  275 (393)
T ss_pred             HhC--CeEEEEeecC-CHHHHH----H----hcCCCEEEEcCC
Confidence            553  3566666566 333332    1    245788888876

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=80.76  E-value=8.5  Score=33.69  Aligned_cols=76  Identities=9%  Similarity=0.077  Sum_probs=41.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |.|++      +++|.+++..+..   .|..|+  .++.++.+.+ +++     +... ++  |..+ .+..+
T Consensus       139 ~~~~vl-I~ga~------g~ig~~~~~~a~~---~g~~v~~~~~~~~~~~~~-~~~-----g~~~-v~--~~~~-~~~~~  198 (329)
T cd08250         139 SGETVL-VTAAA------GGTGQFAVQLAKL---AGCHVIGTCSSDEKAEFL-KSL-----GCDR-PI--NYKT-EDLGE  198 (329)
T ss_pred             CCCEEE-EEeCc------cHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHH-HHc-----CCce-EE--eCCC-ccHHH
Confidence            467788 99999      9999999665554   455454  3555554333 222     2211 12  2222 22222


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      .+.....  ..+|+++++.|
T Consensus       199 ~~~~~~~--~~vd~v~~~~g  216 (329)
T cd08250         199 VLKKEYP--KGVDVVYESVG  216 (329)
T ss_pred             HHHHhcC--CCCeEEEECCc
Confidence            2222221  35999998876

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>KOG2336|consensus

Probab=80.54  E-value=13  Score=32.07  Aligned_cols=102  Identities=11%  Similarity=0.194  Sum_probs=69.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEc---------------C---HHHHHHHHHHHHhhCCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQN---------------C---WDKANDAISKILTEKPS   83 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r---------------~---~~~~~~~~~~l~~~~~~   83 (292)
                      .++-+.+. |.|.       +|.|..+|..+-+.+--...++.-               +   ..+.+.+.+-|....|.
T Consensus        79 rIR~~aVA-iVGv-------GGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLFf~P~QaGlsKv~AA~~TL~~iNPD  150 (422)
T KOG2336|consen   79 RIREFAVA-IVGV-------GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPDQAGLSKVDAAVQTLAEINPD  150 (422)
T ss_pred             HHhhheeE-EEec-------CchhHHHHHHHHhcCcceEEEeecchhhhhcccccccCcccccchHHHHHHHHHHhcCCC
Confidence            35567777 8888       699999966544432222223211               1   34566677777888888


Q ss_pred             CceEEEEccCCChHHHHHHHHHHHHhC---C-CccEEEEcccccCCCCCCCCcchhhhhhhhh
Q psy4251          84 AQCIAMELDLCRLKSVKKFAEEYQKKF---R-SLNILVLNAGVFGLGFSHTEDGFETTFQVNH  142 (292)
Q Consensus        84 ~~~~~~~~Dls~~~~v~~~~~~~~~~~---~-~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~  142 (292)
                      ..+.....+++..+..+.|.+.|.+.-   | ++|.|..|..           .|+.-+++|.
T Consensus       151 V~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVD-----------NfEARMavN~  202 (422)
T KOG2336|consen  151 VVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVD-----------NFEARMAVNQ  202 (422)
T ss_pred             eEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehh-----------hHHHHHHHHH
Confidence            888999999999999999999987642   2 4888887754           4566666663

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=80.51  E-value=6.1  Score=35.49  Aligned_cols=72  Identities=14%  Similarity=0.152  Sum_probs=39.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |.|+       +++|..++..+..+   |..++  ..+.++..+.++++     +....   .|-.+.+.+.+
T Consensus       183 ~g~~Vl-V~G~-------G~vG~~avq~Ak~~---Ga~vi~~~~~~~~~~~~~~~~-----Ga~~v---i~~~~~~~~~~  243 (360)
T PLN02586        183 PGKHLG-VAGL-------GGLGHVAVKIGKAF---GLKVTVISSSSNKEDEAINRL-----GADSF---LVSTDPEKMKA  243 (360)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHC---CCEEEEEeCCcchhhhHHHhC-----CCcEE---EcCCCHHHHHh
Confidence            578888 8775       89999996665543   44444  34444443333332     22211   12223222222


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                             ..+.+|++|.+.|
T Consensus       244 -------~~~~~D~vid~~g  256 (360)
T PLN02586        244 -------AIGTMDYIIDTVS  256 (360)
T ss_pred             -------hcCCCCEEEECCC
Confidence                   1235899999887

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=80.42  E-value=7.7  Score=31.97  Aligned_cols=35  Identities=9%  Similarity=0.129  Sum_probs=23.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC   66 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~   66 (292)
                      .+++||.++ |.||       +.+|..-   +..|...|+.|.+-+
T Consensus         5 l~l~gk~vl-VvGg-------G~va~rk---~~~Ll~~ga~VtVvs   39 (205)
T TIGR01470         5 ANLEGRAVL-VVGG-------GDVALRK---ARLLLKAGAQLRVIA   39 (205)
T ss_pred             EEcCCCeEE-EECc-------CHHHHHH---HHHHHHCCCEEEEEc
Confidence            468899999 7777       3455554   566777887776533

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK04148 hypothetical protein; Provisional

Probab=80.28  E-value=6.5  Score=30.05  Aligned_cols=54  Identities=15%  Similarity=-0.125  Sum_probs=34.1

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++.++ +.|.        |-|..+   +..|.+.|+.|++  .++...+.    .++.    .+.++..|+.+++-
T Consensus        17 ~~kil-eIG~--------GfG~~v---A~~L~~~G~~ViaIDi~~~aV~~----a~~~----~~~~v~dDlf~p~~   72 (134)
T PRK04148         17 NKKIV-ELGI--------GFYFKV---AKKLKESGFDVIVIDINEKAVEK----AKKL----GLNAFVDDLFNPNL   72 (134)
T ss_pred             CCEEE-EEEe--------cCCHHH---HHHHHHCCCEEEEEECCHHHHHH----HHHh----CCeEEECcCCCCCH
Confidence            45666 6664        357777   5566678888886  44554333    3322    46788899987653

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=80.25  E-value=8.6  Score=34.51  Aligned_cols=80  Identities=14%  Similarity=-0.056  Sum_probs=40.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh-HHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRL-KSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~  102 (292)
                      .|.+++ |.|+       +++|..++..+..++....+++.++.++.+.+ +++     +... +  .|-.+. ..+.+.
T Consensus       184 ~g~~vl-V~G~-------g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~~~-----ga~~-~--i~~~~~~~~~~~~  246 (365)
T cd08277         184 PGSTVA-VFGL-------GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-KEF-----GATD-F--INPKDSDKPVSEV  246 (365)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc-----CCCc-E--eccccccchHHHH
Confidence            478888 7774       89999996665544221222234666554433 333     2211 1  122211 112222


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+...  +.+|++|.+.|.
T Consensus       247 ~~~~~~--~g~d~vid~~g~  264 (365)
T cd08277         247 IREMTG--GGVDYSFECTGN  264 (365)
T ss_pred             HHHHhC--CCCCEEEECCCC
Confidence            333322  369999998873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=80.15  E-value=2.5  Score=33.28  Aligned_cols=39  Identities=5%  Similarity=0.028  Sum_probs=27.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKA   70 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~   70 (292)
                      .+|+||.++ |.||       +.+|...   +..|...|+.|.+-+++..
T Consensus         9 l~l~~~~vl-VvGG-------G~va~rk---a~~Ll~~ga~V~VIsp~~~   47 (157)
T PRK06719          9 FNLHNKVVV-IIGG-------GKIAYRK---ASGLKDTGAFVTVVSPEIC   47 (157)
T ss_pred             EEcCCCEEE-EECC-------CHHHHHH---HHHHHhCCCEEEEEcCccC
Confidence            678999999 8887       4555555   6667778877765444333

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=80.10  E-value=5.7  Score=35.52  Aligned_cols=77  Identities=10%  Similarity=-0.033  Sum_probs=40.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE-EE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL-FY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~-v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .|++++ |.|+       +++|..++..+..+   |+. |+  .++.++.+.+ +++     +... +  .|..+.+..+
T Consensus       176 ~g~~Vl-V~G~-------g~vG~~a~~~ak~~---G~~~Vi~~~~~~~~~~~~-~~~-----Ga~~-~--i~~~~~~~~~  235 (358)
T TIGR03451       176 RGDSVA-VIGC-------GGVGDAAIAGAALA---GASKIIAVDIDDRKLEWA-REF-----GATH-T--VNSSGTDPVE  235 (358)
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHH-HHc-----CCce-E--EcCCCcCHHH
Confidence            477888 8875       89999996665543   542 43  3666655443 222     2221 1  2333322222


Q ss_pred             HHHHHHHHhCCCccEEEEcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+ .+... ...+|++|.+.|.
T Consensus       236 ~i-~~~~~-~~g~d~vid~~g~  255 (358)
T TIGR03451       236 AI-RALTG-GFGADVVIDAVGR  255 (358)
T ss_pred             HH-HHHhC-CCCCCEEEECCCC
Confidence            22 22211 1258999998883

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=80.10  E-value=7.4  Score=33.54  Aligned_cols=39  Identities=13%  Similarity=0.022  Sum_probs=26.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKAND   72 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~   72 (292)
                      .|++++ |+|++      +++|.+++..+..   .|+.|+  .++.++.+.
T Consensus       139 ~~~~vl-i~g~~------~~~g~~~~~~a~~---~g~~v~~~~~~~~~~~~  179 (323)
T cd08241         139 PGETVL-VLGAA------GGVGLAAVQLAKA---LGARVIAAASSEEKLAL  179 (323)
T ss_pred             CCCEEE-EEcCC------chHHHHHHHHHHH---hCCEEEEEeCCHHHHHH
Confidence            467888 99998      9999999666554   444444  356555443

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	292
3rd5_A	291	Crystal Structure Of A Putative Uncharacterized Pro		3e-11

>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 83  SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNH 142
           + Q    ELDL  L SV++FA+         ++L+ NAG+  + ++ T DGFE+    NH
Sbjct: 61  AGQVEVRELDLQDLSSVRRFADGVSGA----DVLINNAGIMAVPYALTVDGFESQIGTNH 116
Query: 143 LAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS-KSVLSVENYSDFWAMT 201
           L HF LT    N L+   +L  RVV VSS +H    I  + ++ +S      YS +    
Sbjct: 117 LGHFALT----NLLLP--RLTDRVVTVSSMAHWPGRINLEDLNWRS----RRYSPWL--- 163
Query: 202 AYNDTKLCNVLFGEKL 217
           AY+ +KL N+LF  +L
Sbjct: 164 AYSQSKLANLLFTSEL 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	7e-41
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	2e-32
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	9e-17
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	6e-09
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	6e-09
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	1e-08
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	4e-08
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	5e-08
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	7e-08
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	1e-07
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	1e-07
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	1e-07
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	2e-07
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	3e-07
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	4e-07
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	5e-07
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	6e-07
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	8e-07
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	1e-06
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	1e-06
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	1e-06
1xhl_A	297	Short-chain dehydrogenase/reductase family member	1e-06
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	2e-06
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	3e-06
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	3e-06
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	3e-06
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	4e-06
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	4e-06
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	5e-06
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	5e-06
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	7e-06
1spx_A	278	Short-chain reductase family member (5L265); paral	9e-06
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	1e-05
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	1e-05
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	1e-05
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	1e-05
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	1e-05
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	2e-05
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	2e-05
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	2e-05
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	2e-05
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	4e-05
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	5e-05
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	6e-05
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	6e-05
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	6e-05
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	7e-05
3imf_A	257	Short chain dehydrogenase; structural genomics, in	7e-05
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	8e-05
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	8e-05
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	9e-05
3rih_A	293	Short chain dehydrogenase or reductase; structural	1e-04
1xkq_A	280	Short-chain reductase family member (5D234); parra	1e-04
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	1e-04
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	1e-04
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	2e-04
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	2e-04
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	4e-04
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	4e-04
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	4e-04
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	5e-04
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	5e-04
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	5e-04
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	5e-04
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	5e-04
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	6e-04
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	6e-04
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	6e-04
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	7e-04
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	7e-04
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	7e-04
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	7e-04
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	7e-04
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	8e-04
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	9e-04

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291

 Score =  142 bits (360), Expect = 7e-41
 Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 21/151 (13%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
            K   A   +     + Q    ELDL  L SV++FA+         ++L+ NAG+  + +
Sbjct: 51  RKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADG----VSGADVLINNAGIMAVPY 101

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS 187
           + T DGFE+    NHL HF LT  L   L        RVV VSS +H    I  + ++  
Sbjct: 102 ALTVDGFESQIGTNHLGHFALTNLLLPRLT------DRVVTVSSMAHWPGRINLEDLN-- 153

Query: 188 VLSVENYSDFWAMTAYNDTKLCNVLFGEKLA 218
                 YS      AY+ +KL N+LF  +L 
Sbjct: 154 -WRSRRYS---PWLAYSQSKLANLLFTSELQ 180

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276

 Score =  119 bits (301), Expect = 2e-32
 Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 37/196 (18%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
            +   A+ ++  E  S +    +LD+  L+S++   +  +K++  L++LV NAG+     
Sbjct: 40  TRGQAAVQQLQAEGLSPRF--HQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVA 97

Query: 128 SHT--EDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS 185
             T      E T + N      +  +L   +        RVV VSS     +  +     
Sbjct: 98  DPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ----GRVVNVSSIMSVRALKSCSPEL 153

Query: 186 KSVLSVENYS----------------------DFWAMTAYNDTKLCNVLFGEKLATLWYK 223
           +     E  +                      + W  +AY  TK+   +     A     
Sbjct: 154 QQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARK--- 210

Query: 224 YKIALSSRHCCWKITV 239
               LS +    KI +
Sbjct: 211 ----LSEQRKGDKILL 222

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311

 Score = 77.7 bits (191), Expect = 9e-17
 Identities = 37/208 (17%), Positives = 66/208 (31%), Gaps = 60/208 (28%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLC-RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
            K ++A+ K L        +  +LD+   + ++   A+  +  F  L+ILV NAGV G  
Sbjct: 47  TKGHEAVEK-LKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFS 105

Query: 127 FSH--------------------------------TEDGFETTFQVNHLAHFYLTLQLEN 154
                                              T +  E   ++N+     +T  L  
Sbjct: 106 VDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP 165

Query: 155 ALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYS------------------- 195
            L        R+V VSS +    Y++ +T  + +   +  +                   
Sbjct: 166 LLQLSDS--PRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENL 223

Query: 196 ---DFW--AMTAYNDTKLCNVLFGEKLA 218
              + W     AY  +K C   +   LA
Sbjct: 224 IETNGWPSFGAAYTTSKACLNAYTRVLA 251

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 72  DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSH 129
             +     E  +A    +   +  +   ++F  +  K    L++L+LN         F  
Sbjct: 66  QKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD 125

Query: 130 TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
                  + +VN L++  LT+     L +       +VVVSS
Sbjct: 126 DIHHVRKSMEVNFLSYVVLTVAALPMLKQSN---GSIVVVSS 164

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 66  CWD---KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
            WD      +  +        A+     +D    + +   A++ + +   ++ILV NAGV
Sbjct: 60  LWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGV 118

Query: 123 --FGLGFSHTEDGFETTFQVNHLAHFYLT 149
                 F+  +   E TF+VN LAHF+ T
Sbjct: 119 VYTSDLFATQDPQIEKTFEVNVLAHFWTT 147

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 78  LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKF--RSLNILVLNAGV---FGLGFSHTED 132
           L     ++   + L +   KS+  F  +  +      L++L+ NAGV   +G        
Sbjct: 45  LKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRA 104

Query: 133 GFETTFQVNHLAHFYLTLQLENALIKGAKLF---------ARVVVVSS 171
                  VN  +   LT +L   L   A            A V+ +SS
Sbjct: 105 VIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS 152

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 85  QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNH 142
            C A+  DL      ++ A+   +    L+ILV NAG        S+   G+E   Q+N 
Sbjct: 78  DCQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNV 137

Query: 143 LAHFYLTLQLENALIKGAKL--FARVVVVSS 171
            + F    QL   L + A     ARV+ + S
Sbjct: 138 TSVFSCIQQLLPLLRRSASAENPARVINIGS 168

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
             AN+    +  EK   +C+ +  DL   +  K   +E  ++  SLNILV N        
Sbjct: 83  GDANETKQYV--EKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQ 140

Query: 128 SH---TEDGFETTFQVNHLAHFYLT 149
                T +  E TF++N  ++F++T
Sbjct: 141 GLEYITAEQLEKTFRINIFSYFHVT 165

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
           D+ ++A   +  EK   + + + +D+   + V    E  +  F   +ILV NAG      
Sbjct: 42  DRLHEAARSL-KEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNET 100

Query: 127 -FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFARVVVVSSES 173
                ++ ++  +++  +A   L       L+ G  A+    ++  +S  
Sbjct: 101 IMEAADEKWQFYWELLVMAAVRLA----RGLVPGMRARGGGAIIHNASIC 146

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
           +  N+ I +I  + P A    +  DL   +  +   E+    +  ++IL+ N G+F    
Sbjct: 45  ENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK----YPKVDILINNLGIFEPVE 100

Query: 127 -FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFARVVVVSSES 173
            F   ++ +   F+VN ++   LT     + +K    +   RV+ ++SE+
Sbjct: 101 YFDIPDEDWFKLFEVNIMSGVRLT----RSYLKKMIERKEGRVIFIASEA 146

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 11/86 (12%)

Query: 70  ANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH 129
           A    + I  E+   + + +  DL      +    + ++    L+IL L AG      + 
Sbjct: 88  AQQVKALI--EECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGK---QTAI 142

Query: 130 ------TEDGFETTFQVNHLAHFYLT 149
                 T + F+ TF VN  A F++T
Sbjct: 143 PEIKDLTSEQFQQTFAVNVFALFWIT 168

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 9/113 (7%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFR----SLNILVLNAGVF 123
                   ++  ++P  + +    DL     V++     ++  R       +L+ NA   
Sbjct: 44  SMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATL 103

Query: 124 G---LGFSHTED--GFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
           G    GF +  D       + +N  +   LT    NA      L   VV +SS
Sbjct: 104 GDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS 156

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 17/110 (15%), Positives = 43/110 (39%), Gaps = 9/110 (8%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
           +K   A S+I +    AQ   +  D+     + +  E+  +     +ILV + G    G 
Sbjct: 42  EKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGR 100

Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFARVVVVSSES 173
                 + ++ ++++   +  ++         +    K + R+V + S +
Sbjct: 101 FMELGVEDWDESYRLLARSAVWVG----RRAAEQMVEKGWGRMVYIGSVT 146

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 63  YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRS------LNIL 116
           Y N  ++A + + +I  +       ++  +L  L  V+        + ++       +IL
Sbjct: 38  YGNRKEEAEETVYEI--QSNGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDIL 95

Query: 117 VLNAGVFGLGF--SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
           + NAG+    F    TE  F+    VN  A F++  Q  + L       +R++ +SS
Sbjct: 96  INNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN----SRIINISS 148

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 16/118 (13%)

Query: 69  KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKF--RSLNILVLNAGVFGLG 126
           +    +  +     +   +  E+DL    +  K   + +     + LN+L  NAG+    
Sbjct: 59  EQAKELEDLAKNHSNIHIL--EIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKS 116

Query: 127 ---FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK---------LFARVVVVSSE 172
               +        T Q N +    L       L K AK           A ++ +SS 
Sbjct: 117 ARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 174

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 22/111 (19%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 63  YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
           Y +    A + ++++  +K  AQ +A++ D+ +   V    ++    F  L+ ++ N+G+
Sbjct: 52  YGSSSKAAEEVVAEL--KKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGM 109

Query: 123 --FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
             +      T++ F+  F +N    F++  Q      +G     R+++ SS
Sbjct: 110 EVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG----GRIILTSS 156

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 63  YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
           Y N    A   +S+I  +   +  IA++ D+ ++  + K  ++    F  L+I V N+GV
Sbjct: 49  YANSTKDAEKVVSEI--KALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGV 106

Query: 123 FGLGF--SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
              G     TE+ F+  F +N    F++  +    L +G     R+V+ SS
Sbjct: 107 VSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG----GRIVLTSS 153

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255

 Score = 48.3 bits (116), Expect = 8e-07
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 84  AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 141
            +  A+  D+  L  +        +   ++++L +NAGV         +E  ++  F VN
Sbjct: 54  PRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVN 113

Query: 142 HLAHFYLTLQLENALIKGAKLFARVVVVSS 171
               F  T+Q    L    +    +V  SS
Sbjct: 114 TKGAF-FTVQ---RLTPLIREGGSIVFTSS 139

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 78  LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGF 134
           L EK   +   +  D+     +K+      K    ++ LV NAGV            + +
Sbjct: 44  LKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAW 103

Query: 135 ETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
           +  + +N  +   L       L K       VV VSS
Sbjct: 104 KKLYDINFFSIVSLVGIALPELKKTN---GNVVFVSS 137

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 82  PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSH-TEDGFETTF 138
           P    IA+ L+    +  ++ A   + +F  L+ L+ NA + G         ++ F    
Sbjct: 64  PQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVM 123

Query: 139 QVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
            VN  A F LT  L   L +     A +   SS
Sbjct: 124 HVNVNATFMLTRALLPLLKRSED--ASIAFTSS 154

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 10/86 (11%)

Query: 88  AMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAH 145
            + +D+  + S+KK  E+       ++ +V   G          T +    T        
Sbjct: 38  DVTVDITNIDSIKKMYEQ----VGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQ 93

Query: 146 FYLTLQLENALIKGAKLFARVVVVSS 171
             L L   ++L           + + 
Sbjct: 94  INLVLLGIDSLNDK----GSFTLTTG 115

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 26/145 (17%)

Query: 68  DKANDAISKILTEKPSAQ-CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---- 122
           D+  +   +IL     A+   A+  D+               KF  ++ILV NAG     
Sbjct: 61  DRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLAD 120

Query: 123 FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD 182
                    + ++ TF++N  A   +T + +  LIK       +V VSS           
Sbjct: 121 GTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK---GEIVNVSS----------- 166

Query: 183 TISKSVLSVENYSDFWAMTAYNDTK 207
                   V           Y   K
Sbjct: 167 -------IVAGPQAHSGYPYYACAK 184

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 82  PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTF 138
              Q   ++L  C  ++ ++ A+     +  L+ ++ NAG+ G            ++   
Sbjct: 62  RQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVM 121

Query: 139 QVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
           QVN  A F LT  L   L+K       +V  SS
Sbjct: 122 QVNVNATFMLTQALLPLLLKSDA--GSLVFTSS 152

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
             A +   KI  E    + +  + D+    +V++     ++ F  +++LV NAG+  L  
Sbjct: 63  AAAEEVAGKI--EAAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTT 120

Query: 128 --SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
                +  F+    VN    F    +    L  G     R++ +S+
Sbjct: 121 IAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG----GRIINMST 162

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 63  YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
           Y N  + A + ++ I  +K  +    ++ ++  ++ + +  EE  K F  L+I+  N+GV
Sbjct: 60  YANSTESAEEVVAAI--KKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGV 117

Query: 123 FGLGF--SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
              G     T + F+  F +N    F++  +    L  G     R++++ S
Sbjct: 118 VSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG----GRLILMGS 164

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 75  SKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG-VFGLGFSHT--E 131
             I  E P+A+    +LD+ + + +K F E   ++F+ ++ILV NAG   G         
Sbjct: 78  KTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIAT 137

Query: 132 DGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY 178
           +  +  F  N  A   +T  +             +V + S + R +Y
Sbjct: 138 EDIQDVFDTNVTALINITQAVLPIFQAKNS--GDIVNLGSIAGRDAY 182

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 86  CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLA 144
            +A+  D      +  F +  + +  SL  +V NA  +         D F   F V+ LA
Sbjct: 73  AVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLA 132

Query: 145 HFYLTLQLENALIKGAKLFARVVVVSSES------HRYSYITKDTISKSVLSVENYSDFW 198
            + + L  E  L       A +V +S +          +Y      +K+ L         
Sbjct: 133 PYLINLHCEPLLTASEV--ADIVHISDDVTRKGSSKHIAY----CATKAGL--------E 178

Query: 199 AMT 201
           ++T
Sbjct: 179 SLT 181

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
           D AN    ++  E   A+    + DL   + V K  +  +K+F  ++I +   G      
Sbjct: 49  DTANKLKDEL--EDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKP 106

Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
               +E  F+    +N+   ++   Q    +         ++ +++
Sbjct: 107 IVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPN----GHIITIAT 148

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 84  AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 141
              + ++ D   L  + +  E+ + +   +++L +NAG   +      TE+ ++ TF  N
Sbjct: 75  GGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRN 134

Query: 142 HLAHFYLTLQLENALIKGAKLFAR---VVVVSS 171
                  T+Q      K   L AR   VV+  S
Sbjct: 135 VKGVL-FTVQ------KALPLLARGSSVVLTGS 160

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235

 Score = 45.6 bits (109), Expect = 5e-06
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 72  DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT- 130
           + I+  L ++   +     LD+ + +SV++F+++  ++F  ++++V NAG+         
Sbjct: 40  EKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEEL 99

Query: 131 -EDGFETTFQVNHLAHFYLTLQLENALIKGAKLFAR----VVVVSSESHR 175
            E+ F    +VN L  +        A +    L       +V  S  S R
Sbjct: 100 SEEEFHEMIEVNLLGVWRTL----KAFLDS--LKRTGGLALVTTSDVSAR 143

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248

 Score = 45.2 bits (108), Expect = 7e-06
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 15/109 (13%)

Query: 78  LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG---- 133
           L ++        +LD+    ++++       ++ +++ILV NAG+  LG           
Sbjct: 40  LKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGL-ALGMEPAHKASVED 98

Query: 134 FETTFQVNHLAHFYLTLQLENALIKGAKLFAR----VVVVSSESHRYSY 178
           +ET    N+    Y+T     A++ G  +  R    ++ + S +  + Y
Sbjct: 99  WETMIDTNNKGLVYMT----RAVLPG--MVERNHGHIINIGSTAGSWPY 141

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 68  DKANDAISKILTE-KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
           ++  +   +IL          ++  D+       +       KF  L+ILV NAG     
Sbjct: 41  ERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPD 100

Query: 127 FSH------TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
                    + + ++ T  +N  +   LT +    L         +V +SS
Sbjct: 101 SQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISS 148

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 11/100 (11%), Positives = 29/100 (29%), Gaps = 23/100 (23%)

Query: 84  AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVN 141
                +  D+  L  + + A+E  +    ++++  NAG+   G       D +     ++
Sbjct: 80  FDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDID 139

Query: 142 HLAHFYLTLQLENALIKGAKLFA----------RVVVVSS 171
                +             + F            +   +S
Sbjct: 140 LWGSIH-----------AVEAFLPRLLEQGTGGHIAFTAS 168

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK 161
            A+   K  + ++ LVL AG+                 VN+     L      AL KG  
Sbjct: 52  IADVLAKCSKGMDGLVLCAGL-----GPQTKVLGNVVSVNYFGATELMDAFLPALKKGH- 105

Query: 162 LFARVVVVSSES---------HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTK 207
                VV+SS +              +     +K+   VE+  +     AY  +K
Sbjct: 106 -QPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSK 159

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
           ++   A S +    P A+  A   D+     V+ FAE  ++     +ILV NAG      
Sbjct: 43  ERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVST 102

Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
               T++ +    Q+   +  +  
Sbjct: 103 FAETTDEAWSEELQLKFFSVIHPV 126

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 2/68 (2%)

Query: 84  AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
              I +  DL   + V        +      +++  AG    G     T +      + N
Sbjct: 49  NAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESN 108

Query: 142 HLAHFYLT 149
            ++   + 
Sbjct: 109 LVSTILVA 116

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 85  QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNH 142
           + +   +D+   + +    E+  KKF  ++ILV NA    L  +        +    VN 
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNT 161

Query: 143 LAHFYLTLQLENALIKGAKLFARVVVVSS 171
              +  +      L K     A ++ +S 
Sbjct: 162 RGTYLASKACIPYLKKSKV--AHILNISP 188

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 72  DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSH 129
           DA    L +  S + I ++ D+         A    ++F  ++++  NAGVF      + 
Sbjct: 48  DACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATM 107

Query: 130 TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
           T +     F VN    FY      +ALI       RVV+ SS
Sbjct: 108 TPEQLNGIFAVNVNGTFYAVQACLDALIA--SGSGRVVLTSS 147

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           D  + A++ +  E    + + ++LD+   +  K  A+E + +F  ++IL  NAGV     
Sbjct: 43  DSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQP 102

Query: 128 --SHTEDGFETTFQVN 141
               + D ++    VN
Sbjct: 103 IEESSYDDWDWLLGVN 118

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 80  EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETT 137
                  +A  LD+    SV  FA+     +  +++LV NAGV  L        D +E  
Sbjct: 49  RDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERM 108

Query: 138 FQVN 141
             VN
Sbjct: 109 IDVN 112

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           ++A   +S+I  E+   + +A+  D    +++++   E  +    L+ILV +AG++    
Sbjct: 67  ERAQAVVSEI--EQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAP 124

Query: 128 --SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
               T   F+    VN  A F         L  G     R++ + S
Sbjct: 125 LEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG----GRIITIGS 166

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 18/116 (15%)

Query: 72  DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTE 131
            A++  L+ K   + + + LD+    ++    +   ++F +L  L+ NAG+  LG    +
Sbjct: 59  QALAGELSAK--TRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGL-ALGTDPAQ 115

Query: 132 DG----FETTFQVNHLAHFYLTLQLENALIKGAKLFAR-----VVVVSSESHRYSY 178
                 ++T    N     Y T      L+    L A      +V + S + ++ Y
Sbjct: 116 SCDLDDWDTMVDTNIKGLLYST----RLLLPR--LIAHGAGASIVNLGSVAGKWPY 165

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 15/106 (14%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
            +   A  K+       +C+ + +D+    +V    ++  K+F  ++IL+  A       
Sbjct: 62  PRVLTAARKLAGATG-RRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCP 120

Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
             + + + F+T   ++    F ++  L     +       +V +++
Sbjct: 121 AGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHG--GVIVNITA 164

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 68  DKANDAISKILTE-KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
                   +I+   K   + I + LD+          ++  +K+ +++ILV  A +F  G
Sbjct: 42  QNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDG 101

Query: 127 -FSHTEDGFETTFQVNHLAHFYLT 149
             S   D F    ++N +A + + 
Sbjct: 102 SLSEPVDNFRKIMEINVIAQYGIL 125

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 80  EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQ 139
           EK   +    E+D+    +V +       +F  L+++V NAG+  LG       F   F 
Sbjct: 67  EKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFD 126

Query: 140 VNHLAHFYLTLQLEN-ALIKGAKLFARVVVVSS 171
           V+       T+      L  G    A ++   S
Sbjct: 127 VD-FVGVINTVHAALPYLTSG----ASIITTGS 154

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
           ++A + I  I  E    + + + LD+    +     +E  +K    ++LV NAG+     
Sbjct: 39  EQAAETIKLI--EAADQKAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKP 96

Query: 126 GFSHTEDGFETTFQVN 141
               TE+  +  + VN
Sbjct: 97  LLEVTEEDLKQIYSVN 112

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 80  EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETT 137
               A+   +ELD+   + V        +    L+ILV NAG+  LG         +   
Sbjct: 52  TAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRM 111

Query: 138 FQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY 178
              N L   Y+T      L++       VV +SS + R + 
Sbjct: 112 IDTNLLGLMYMTRAALPHLLRSK---GTVVQMSSIAGRVNV 149

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 18/106 (16%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +K  +A  +I  E+   Q + +++D+     ++K  E+  +KF  ++IL+ NA    +  
Sbjct: 41  EKLEEAKLEI--EQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICP 98

Query: 128 SH--TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
           +   + +G+ +   +     FY +  +    I+   +   ++ + +
Sbjct: 99  AEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIE-KGIKGNIINMVA 143

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
             A +   +I  EK   + + ++ ++ +   +K+  ++  + F  L++ V NA       
Sbjct: 40  KAALETAEEI--EKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRP 97

Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
                E  ++ T  +N  A  +  
Sbjct: 98  VMELEETHWDWTMNINAKALLFCA 121

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
             A    S+I   +     +A+++D+     V    E+ +K     +++V NAGV     
Sbjct: 37  ATAKAVASEI--NQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTP 94

Query: 126 GFSHTEDGFETTFQVN 141
             S T +  +  + +N
Sbjct: 95  IESITPEIVDKVYNIN 110

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 75  SKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--ED 132
           ++  +       I    DL   + +       + +   ++I + NAG+       +    
Sbjct: 74  AECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTS 133

Query: 133 GFETTFQVNHLAHFYLT 149
           G++  F VN LA    T
Sbjct: 134 GWKDMFNVNVLALSICT 150

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
            +   +++  L E  +   I + LD+    S    A      F +L+++  NAG+F    
Sbjct: 75  PRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEAR 134

Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
             + T +       VN     Y        L        RV++ SS
Sbjct: 135 LDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTA--SGRGRVILTSS 178

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 68  DKANDAISKILTE-KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
           ++  +    IL       Q  ++  D+       +      K+F  +++LV NAG     
Sbjct: 41  ERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPD 100

Query: 127 F------SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
                      D +  T ++N  A   +T +++  L+        +V VSS
Sbjct: 101 AFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVSS 148

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FG 124
           +  +  ++ +  +            + + +  ++           ++ILV NA V   FG
Sbjct: 49  ENVDRTVATL--QGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFG 106

Query: 125 LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
                TE+ ++    VN  A   +T  +   + K       V++VSS
Sbjct: 107 NIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGG--GSVLIVSS 151

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 72  DAISKILTEKPSAQCIAMELDLCR-LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT 130
            A++++    P         D+   +   KK  ++   + ++++IL+  AG+        
Sbjct: 43  TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL------D 96

Query: 131 EDGFETTFQVNHLAHFYLTL 150
           +   E T  +N       T 
Sbjct: 97  DHQIERTIAINFTGLVNTTT 116

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
           D AN  + +I  ++   Q  A   D+   + +   A+    K   ++ILV NAG  G   
Sbjct: 46  DAANHVVDEI--QQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKP 103

Query: 127 FSHTEDGFETTFQVNHLAHFYLT 149
           F      F   +++N  + F+L+
Sbjct: 104 FDMPMADFRRAYELNVFSFFHLS 126

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
                   +       A    +  D+  +  V++      +++  ++ LV NAGV  FG 
Sbjct: 44  ADLEKISLEC--RAEGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGA 101

Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
               TE+ F+ T   N    F+LT
Sbjct: 102 LSDLTEEDFDYTMNTNLKGTFFLT 125

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
           D       +I + +   +  A++ D+     V+    E  K     NI++ NA       
Sbjct: 61  DVLKATAEQI-SSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISP 119

Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
               + + ++T   +      ++TL++   LIK A+  A  + +++
Sbjct: 120 TERLSPNAWKTITDIVLNGTAFVTLEIGKQLIK-AQKGAAFLSITT 164

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           D+AN  + +I  +K   + IA++ D+     V    +   K+F  L++++ NAG+     
Sbjct: 43  DEANSVLEEI--KKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVS 100

Query: 128 SH--TEDGFETTFQVNHLAHFYLT 149
           SH  +   +      N    F  +
Sbjct: 101 SHEMSLSDWNKVIDTNLTGAFLGS 124

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 6/75 (8%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 80  EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRS--LNILVLNAGVFGLGFSHTEDG---F 134
              +   I ++ +    +  +   E+     +   ++ +   AG +  G + ++D     
Sbjct: 38  NDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNA 97

Query: 135 ETTFQVNHLAHFYLT 149
           +   + +  +     
Sbjct: 98  DLMIKQSVWSSAIAA 112

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 85  QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF---SHTEDGFETTFQVN 141
               +E D+ +    +   ++  K    ++ LV  A V            + +     +N
Sbjct: 49  GVEPIESDIVKEVLEEGGVDK-LKNLDHVDTLVHAAAVARDTTIEAGSVAE-WHAHLDLN 106

Query: 142 HLAHFYLTLQLENALIKGAKLFARVVVVSS 171
            +    L+ QL  AL   +     V+ ++S
Sbjct: 107 VIVPAELSRQLLPALRAAS---GCVIYINS 133

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 16/88 (18%)

Query: 88  AMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHT-EDGFETTFQVNHLAH 145
           A+  DL      K   EE       L++LV   G  G         D  E     +    
Sbjct: 46  ALPADLADELEAKALLEE----AGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAH---- 97

Query: 146 FYLTLQLENALIKG--AKLFARVVVVSS 171
                     ++K    +  AR V   +
Sbjct: 98  LLTAA----FVLKHARFQKGARAVFFGA 121

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 85  QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
           Q    + D        K  +  +K F  ++ LV NAG+         T   +     VN
Sbjct: 55  QIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVN 113

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 84  AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQV 140
            + +++  D+     V    +E  K +  +++++ NA          + T +      ++
Sbjct: 60  RRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIEL 119

Query: 141 NHLAHFYLT 149
                  L 
Sbjct: 120 TVFGALRLI 128

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           ++A  A ++I          A+++D+ R  S+        +    L+ILV NA +F L  
Sbjct: 43  ERARQAAAEI-----GPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAP 97

Query: 128 SH--TEDGFETTFQVN 141
               T + +E  F +N
Sbjct: 98  IVEITRESYEKLFAIN 113

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
             A D +   L     A+ I ++ ++   + V    +     F  +N LV N G      
Sbjct: 56  KSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSP 115

Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIK 158
               +  G+    + N    FY+   + ++ +K
Sbjct: 116 AEHISSKGWHAVLETNLTGTFYMCKAVYSSWMK 148

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 78  LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFE 135
           L E+       + +DL    +  + A    + F  L++LV NAG+             F+
Sbjct: 64  LGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFD 123

Query: 136 TTFQVNHLAHFYLT 149
            T  VN  A   L 
Sbjct: 124 ATIAVNLRAPALLA 137

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 78  LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFE 135
           + +   A+   +E D+     VK   +   K++ S+++LV NAG+   G     +   + 
Sbjct: 40  IHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWR 99

Query: 136 TTFQVN 141
               VN
Sbjct: 100 RIIDVN 105

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
           +    + + +L   P A+ +    D+     V+ +     ++F  ++    NAG+ G   
Sbjct: 48  EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQN 107

Query: 127 --FSHTEDGFETTFQVN 141
              S T   F+    +N
Sbjct: 108 PTESFTAAEFDKVVSIN 124

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 4/75 (5%)

Query: 78  LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGF 134
             E P+A   +  +     + +K   E+   K   ++  V  AG +  G +         
Sbjct: 54  FRENPNAD-HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSV 112

Query: 135 ETTFQVNHLAHFYLT 149
           +    +N  + F   
Sbjct: 113 KGMIDMNLYSAFASA 127

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +      + +  +    + + ++ D+   + ++    +    F  L+ILV NAGV     
Sbjct: 42  EAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN---- 97

Query: 128 SHTEDGFETTFQVN 141
              E  +E T Q+N
Sbjct: 98  --NEKNWEKTLQIN 109

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 84  AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
            + + +  D+             Q++  +LN+LV NAG+   G       + F    ++N
Sbjct: 52  ERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKIN 111

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
           ++A++A  K+  EK   + +A   D+   + VKK  E  ++KF  L+ +V  AG+     
Sbjct: 56  EEASEAAQKLT-EKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHP 114

Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
                 D F    +VN    +Y+ 
Sbjct: 115 AEEFPLDEFRQVIEVNLFGTYYVC 138

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 99  VKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 156
           ++K  +   +K + ++ILVLNAG    G     T + F+       L    +        
Sbjct: 68  LRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIV----RNY 123

Query: 157 IKG--AKLFARVVVVSSES 173
           +     K + R+V ++S S
Sbjct: 124 LPAMKEKGWGRIVAITSFS 142

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249

 Score = 39.0 bits (92), Expect = 9e-04
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
             A +A + I       + + ++ D+ +   V+ F ++    F   +ILV NAG++    
Sbjct: 40  VPAPEAEAAI--RNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIP 97

Query: 126 GFSHTEDGFETTFQVN 141
               T + ++ TF++N
Sbjct: 98  FDELTFEQWKKTFEIN 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	100.0
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	100.0
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	100.0
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	100.0
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	100.0
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	100.0
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	100.0
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	100.0
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	100.0
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	100.0
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	100.0
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	100.0
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	100.0
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	100.0
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	100.0
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	100.0
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	100.0
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	100.0
3imf_A	257	Short chain dehydrogenase; structural genomics, in	100.0
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	100.0
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	100.0
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	100.0
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	100.0
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	100.0
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	100.0
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	100.0
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	100.0
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	100.0
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	100.0
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	100.0
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
4dqx_A	277	Probable oxidoreductase protein; structural genomi	100.0
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	100.0
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	100.0
3rih_A	293	Short chain dehydrogenase or reductase; structural	100.0
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	100.0
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	100.0
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	100.0
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	100.0
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	100.0
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	100.0
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	100.0
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	100.0
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	100.0
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	100.0
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	100.0
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	100.0
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	100.0
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	100.0
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	100.0
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	100.0
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	100.0
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	100.0
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	100.0
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	100.0
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	100.0
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	100.0
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	100.0
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	100.0
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	100.0
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	100.0
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	100.0
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	100.0
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	100.0
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	100.0
3cxt_A	291	Dehydrogenase with different specificities; rossma	100.0
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	100.0
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	100.0
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	100.0
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	100.0
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	100.0
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	100.0
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	100.0
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	100.0
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	100.0
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	100.0
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	100.0
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	100.0
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	100.0
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	100.0
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	100.0
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	100.0
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	100.0
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	100.0
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	100.0
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	100.0
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	100.0
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	100.0
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	100.0
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	100.0
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	100.0
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	100.0
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	100.0
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	100.0
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	100.0
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	100.0
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	100.0
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	100.0
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	100.0
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	100.0
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	100.0
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	100.0
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	100.0
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	100.0
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	100.0
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	100.0
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	100.0
1xhl_A	297	Short-chain dehydrogenase/reductase family member	100.0
1xkq_A	280	Short-chain reductase family member (5D234); parra	100.0
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	100.0
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	100.0
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	100.0
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	100.0
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	100.0
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	100.0
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	100.0
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	100.0
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	100.0
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	100.0
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	100.0
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	100.0
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	100.0
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	100.0
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	100.0
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	100.0
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	100.0
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	100.0
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	100.0
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	100.0
1xq1_A	266	Putative tropinone reducatse; structural genomics,	100.0
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	100.0
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	100.0
1spx_A	278	Short-chain reductase family member (5L265); paral	100.0
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	100.0
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	100.0
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	100.0
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	100.0
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	100.0
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	100.0
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	100.0
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	100.0
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	100.0
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	100.0
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	100.0
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	100.0
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	100.0
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	100.0
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	100.0
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	100.0
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	100.0
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	100.0
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	100.0
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	100.0
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	100.0
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	100.0
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	100.0
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	100.0
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	100.0
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	100.0
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	100.0
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	100.0
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.98
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.98
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.98
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.98
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.98
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.98
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.98
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.98
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.98
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.98
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.98
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.98
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.98
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.98
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.98
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.97
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.97
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.97
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.97
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.97
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.97
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.97
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.97
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.97
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.97
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.97
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.97
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.97
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.97
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.97
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.97
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.97
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.97
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.97
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.97
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.97
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.97
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.97
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.97
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.97
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.96
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.96
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.96
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.96
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.95
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.95
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.95
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.94
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.93
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.93
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.93
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.92
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.92
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.91
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.91
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.89
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.89
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.88
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.87
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.83
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.82
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.81
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.8
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.79
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.78
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.78
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.78
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.78
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.76
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.76
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.75
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.75
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.75
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.74
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.74
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.73
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.73
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.73
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.72
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.72
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.72
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.72
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.72
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.72
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.71
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.71
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.71
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.7
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.69
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.68
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.68
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.68
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.67
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.67
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.67
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.67
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.67
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.67
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.67
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.67
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.67
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.66
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.66
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.66
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.66
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.64
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.64
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.63
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.63
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.62
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.62
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.61
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.61
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.6
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.6
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.6
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.59
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.59
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.58
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.57
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.57
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.56
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.56
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.56
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.54
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.53
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.53
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.52
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.51
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.5
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.46
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.44
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.39
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.39
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.37
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.3
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.29
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.28
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.27
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.27
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.21
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.2
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.16
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.15
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.14
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.12
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.1
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.08
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.02
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	98.56
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.46
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	98.35
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.21
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.19
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	97.97
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.97
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	97.95
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.94
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.93
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.8
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.76
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.73
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.72
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.66
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.66
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.46
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.43
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	97.42
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.39
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	97.36
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.36
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	97.35
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	97.31
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.22
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	97.21
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.2
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.16
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	97.13
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	97.1
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.04
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.95
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.88
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.85
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.85
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.8
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	96.8
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.69
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.67
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.62
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.49
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.43
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.36
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	96.35
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.34
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.3
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.14
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.14
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.98
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.9
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	95.85
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.84
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.82
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.73
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.71
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.7
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.67
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.66
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.66
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	95.62
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.52
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.43
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.4
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.32
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.29
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.27
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.21
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.08
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.97
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.94
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.87
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	94.77
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.55
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.43
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	94.42
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.33
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.28
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.27
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.24
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.2
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	94.1
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.79
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.77
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	93.76
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	93.55
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	93.53
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.37
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.36
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.15
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	92.79
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.75
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	92.55
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	92.55
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	92.38
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	92.25
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.19
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	92.18
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	91.85
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	91.82
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	91.75
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	91.68
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	91.5
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	91.46
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.42
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	91.16
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	91.12
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	91.09
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	91.05
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	90.9
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	90.89
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	90.85
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	90.7
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	90.66
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	90.64
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	90.42
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	90.3
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	90.3
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	90.23
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.63
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	89.57
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	89.38
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	89.13
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	89.13
3tl2_A	315	Malate dehydrogenase; center for structural genomi	89.08
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	88.74
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	88.6
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	88.6
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	88.52
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	88.12
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	88.03
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	87.93
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	87.9
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	87.61
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	87.49
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	87.37
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	87.25
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	87.15
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	87.04
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	86.58
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	86.25
2l82_A	162	Designed protein OR32; structural genomics, northe	86.14
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	85.78
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	85.7
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	84.9
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	84.68
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	84.58
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.54
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	84.13
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	84.07
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	83.97
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	83.91
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	83.83
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	83.79
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	83.55
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	83.36
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	83.2
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	83.02
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	82.99
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	82.96
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	82.87
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	82.04
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	81.62
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	81.45
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	81.44
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	80.75
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	80.7
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	80.5
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	80.14

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=100.00  E-value=2e-43  Score=299.41  Aligned_cols=233  Identities=13%  Similarity=0.118  Sum_probs=196.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|+||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++++.  +.++.+++||++|+++
T Consensus         3 ~sL~gKval-VTGas------~GIG~ai---A~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dvt~~~~   70 (254)
T 4fn4_A            3 QSLKNKVVI-VTGAG------SGIGRAI---AKKFALNDSIVVAVELLEDRLNQIVQELRGM--GKEVLGVKADVSKKKD   70 (254)
T ss_dssp             GGGTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence            479999999 99999      9999999   666778888876  49999999999999877  6789999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+++|+||+||||||+..   ++.+.+.++|++.+++|+.|+|+++++++|+|++++.  |+||++||..+.
T Consensus        71 v~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~--G~IVnisS~~g~  148 (254)
T 4fn4_A           71 VEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGK--GVIVNTASIAGI  148 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEEechhhc
Confidence            99999999999999999999999753   4678899999999999999999999999999998887  999999999988


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       ...+|++||+++.+|++++|.|+.++|||||+|+||+|+ +|.......  ......
T Consensus       149 ~~~------------~-------~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~--~~~~~~  207 (254)
T 4fn4_A          149 RGG------------F-------AGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKP--SELGMR  207 (254)
T ss_dssp             CSS------------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSC--CHHHHH
T ss_pred             CCC------------C-------CChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCC--cHHHHH
Confidence            765            3       678999999999999999999999999999999999999 887654321  111111


Q ss_pred             hh-hccc--cccCCHHHhhc------ccccCCCCCcccc-CCcc
Q psy4251         255 WI-SRVR--PVTNFQVDLTG------TAEKVGLSGLPDS-EWMW  288 (292)
Q Consensus       255 ~~-~~~~--~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w  288 (292)
                      .. ....  ..+.+|+|.|.      ++.....+|+.+. |.-|
T Consensus       208 ~~~~~~~~~~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG~  251 (254)
T 4fn4_A          208 TLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGL  251 (254)
T ss_dssp             HHHHHHTTCCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred             HHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCCc
Confidence            11 1122  23568999987      6778888998663 4433

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=100.00  E-value=1.3e-42  Score=294.68  Aligned_cols=232  Identities=12%  Similarity=0.136  Sum_probs=197.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|+||+++ ||||+      +|||+++   +..|+++|+.|+.  |+.++++++.+++.+.  +.++..++||++|+++
T Consensus         5 f~L~gKval-VTGas------~GIG~ai---a~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~--g~~~~~~~~Dv~~~~~   72 (255)
T 4g81_D            5 FDLTGKTAL-VTGSA------RGLGFAY---AEGLAAAGARVILNDIRATLLAESVDTLTRK--GYDAHGVAFDVTDELA   72 (255)
T ss_dssp             TCCTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHH
T ss_pred             cCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHH
Confidence            479999999 99999      9999999   7778889988875  8999999999999887  6789999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+++++||+||||||+..  ++.+.+.++|++.+++|+.|+|+++++++|+|.++ ..  |+||++||..+.
T Consensus        73 v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~--G~IVnisS~~~~  150 (255)
T 4g81_D           73 IEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSG--GKIINIGSLTSQ  150 (255)
T ss_dssp             HHHHHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCC--CEEEEEeehhhc
Confidence            99999999999999999999999863  56788999999999999999999999999999654 56  999999999888


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       ....|++||+++.+|++++|.|+.++|||||+|+||+|+ ++.+.....   ..+..
T Consensus       151 ~~~------------~-------~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~---~~~~~  208 (255)
T 4g81_D          151 AAR------------P-------TVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIED---KQFDS  208 (255)
T ss_dssp             SBC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTC---HHHHH
T ss_pred             CCC------------C-------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCC---HHHHH
Confidence            765            3       678999999999999999999999999999999999999 988765432   12222


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCcccc-CCcc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPDS-EWMW  288 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w  288 (292)
                      ++..  ....+.+|+|.|.      ++.....+|+.+. |.-|
T Consensus       209 ~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG~  251 (255)
T 4g81_D          209 WVKSSTPSQRWGRPEELIGTAIFLSSKASDYINGQIIYVDGGW  251 (255)
T ss_dssp             HHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred             HHHhCCCCCCCcCHHHHHHHHHHHhCchhCCCcCCEEEECCCe
Confidence            2211  2223568999887      6778888998653 5444

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=100.00  E-value=9.2e-41  Score=285.79  Aligned_cols=225  Identities=15%  Similarity=0.126  Sum_probs=183.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..|+||++| ||||+      +|||+++   +..|+++|+.|+  .|+.++++++++++     +.++..++||++|+++
T Consensus        25 ~rL~gKval-VTGas------~GIG~ai---A~~la~~Ga~V~i~~r~~~~l~~~~~~~-----g~~~~~~~~Dv~~~~~   89 (273)
T 4fgs_A           25 QRLNAKIAV-ITGAT------SGIGLAA---AKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQADSANLAE   89 (273)
T ss_dssp             CTTTTCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTCEEEECCTTCHHH
T ss_pred             chhCCCEEE-EeCcC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeEEEEecCCCHHH
Confidence            459999999 99999      9999999   777888888876  49999998888776     5678899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+++|+||+||||||+.  .++.+.+.++|++.+++|+.|+|+++++++|+|++.    |+||+++|..+..
T Consensus        90 v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~----G~IInisS~~~~~  165 (273)
T 4fgs_A           90 LDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG----SSVVLTGSTAGST  165 (273)
T ss_dssp             HHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE----EEEEEECCGGGGS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC----CeEEEEeehhhcc
Confidence            9999999999999999999999986  367889999999999999999999999999999653    8999999998887


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC--ccchh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT--PVRTF  253 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~--~~~~~  253 (292)
                      +.            +       ...+|++||+++..|++++|.|+.++|||||+|+||+|+ ++.........  ...+.
T Consensus       166 ~~------------~-------~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~  226 (273)
T 4fgs_A          166 GT------------P-------AFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLL  226 (273)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHH
T ss_pred             CC------------C-------CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHH
Confidence            65            3       678999999999999999999999999999999999999 87765432110  01122


Q ss_pred             hhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+..  ....+.+|+|.|.      ++.....+|+.+
T Consensus       227 ~~~~~~~PlgR~g~peeiA~~v~FLaSd~a~~iTG~~i  264 (273)
T 4fgs_A          227 NALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGAEL  264 (273)
T ss_dssp             HHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCeE
Confidence            22211  2223568999987      677788888865

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=100.00  E-value=3.4e-40  Score=280.82  Aligned_cols=234  Identities=13%  Similarity=0.129  Sum_probs=186.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++. +..+++.+.  +.++.+++||++|+++
T Consensus         3 ~~L~gKval-VTGas------~GIG~ai---a~~la~~Ga~Vv~~~r~~~~~-~~~~~~~~~--~~~~~~~~~Dv~~~~~   69 (258)
T 4gkb_A            3 LNLQDKVVI-VTGGA------SGIGGAI---SMRLAEERAIPVVFARHAPDG-AFLDALAQR--QPRATYLPVELQDDAQ   69 (258)
T ss_dssp             CCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCCCH-HHHHHHHHH--CTTCEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEECCcccH-HHHHHHHhc--CCCEEEEEeecCCHHH
Confidence            479999999 99999      9999999   6778888887764  665543 344566666  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC-CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~-~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      ++++++++.+++|+||+||||||+.. .+.+.+.++|++.+++|+.++|+++++++|+|+++.   |+||++||..+..+
T Consensus        70 v~~~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~---G~IVnisS~~~~~~  146 (258)
T 4gkb_A           70 CRDAVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR---GAIVNISSKTAVTG  146 (258)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCTHHHHC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---CeEEEEeehhhccC
Confidence            99999999999999999999999864 456778999999999999999999999999997654   89999999998876


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc-CCccchhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF-GTPVRTFSW  255 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~-~~~~~~~~~  255 (292)
                      .            +       ...+|++||+++.+|++++|.|+.++|||||+|+||+|+ ++.+..... ..+......
T Consensus       147 ~------------~-------~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~  207 (258)
T 4gkb_A          147 Q------------G-------NTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAE  207 (258)
T ss_dssp             C------------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHH
T ss_pred             C------------C-------CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHH
Confidence            5            3       678999999999999999999999999999999999999 988764321 111222222


Q ss_pred             h-hccc--cccCCHHHhhc------ccccCCCCCcccc-CCccc
Q psy4251         256 I-SRVR--PVTNFQVDLTG------TAEKVGLSGLPDS-EWMWH  289 (292)
Q Consensus       256 ~-~~~~--~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w~  289 (292)
                      + .+.+  ..+.+|+|.|.      ++.....+|+.+. |.-|+
T Consensus       208 ~~~~~plg~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~T  251 (258)
T 4gkb_A          208 IAAKVPLGRRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGGYT  251 (258)
T ss_dssp             HHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred             HHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEEECCCcc
Confidence            2 1122  23568999987      7788888999663 55443

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.4e-40  Score=279.80  Aligned_cols=227  Identities=18%  Similarity=0.170  Sum_probs=184.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|+||+++ ||||+      +|||+++   +..|+++|+.|+.  |+.  .+++.+++.+.  +.++.+++||++|+++
T Consensus         5 f~L~GKval-VTGas------~GIG~ai---A~~la~~Ga~Vvi~~r~~--~~~~~~~~~~~--g~~~~~~~~Dv~d~~~   70 (247)
T 4hp8_A            5 FSLEGRKAL-VTGAN------TGLGQAI---AVGLAAAGAEVVCAARRA--PDETLDIIAKD--GGNASALLIDFADPLA   70 (247)
T ss_dssp             TCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSC--CHHHHHHHHHT--TCCEEEEECCTTSTTT
T ss_pred             cCCCCCEEE-EeCcC------CHHHHHH---HHHHHHcCCEEEEEeCCc--HHHHHHHHHHh--CCcEEEEEccCCCHHH
Confidence            579999999 99999      9999999   7778899988875  543  24566677666  6789999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      ++++++     +++||+||||||+..  ++.+.+.++|++.+++|+.|+|+++++++|+|.++. .  |+||++||..+.
T Consensus        71 v~~~~~-----~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~--G~IVnisS~~~~  143 (247)
T 4hp8_A           71 AKDSFT-----DAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRS--GKVVNIASLLSF  143 (247)
T ss_dssp             TTTSST-----TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--EEEEEECCGGGT
T ss_pred             HHHHHH-----hCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCC--cEEEEEechhhC
Confidence            877653     479999999999863  567889999999999999999999999999997653 6  999999999888


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC-ccchh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT-PVRTF  253 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~-~~~~~  253 (292)
                      .+.            +       ...+|++||+++.+|++++|.|+.++|||||+|+||+|+ +|.+....... ...+.
T Consensus       144 ~g~------------~-------~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~  204 (247)
T 4hp8_A          144 QGG------------I-------RVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAIL  204 (247)
T ss_dssp             SCC------------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHH
T ss_pred             CCC------------C-------CChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHH
Confidence            765            3       678999999999999999999999999999999999999 98876533210 11122


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCcccc-CCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPDS-EWMWH  289 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w~  289 (292)
                      ...  ....+.+|+|.|.      ++....++|+.+. |.-|+
T Consensus       205 ~~~--PlgR~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG~~  245 (247)
T 4hp8_A          205 ERI--PAGRWGHSEDIAGAAVFLSSAAADYVHGAILNVDGGWL  245 (247)
T ss_dssp             TTC--TTSSCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred             hCC--CCCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECcccc
Confidence            222  2223568999887      7778888998663 55554

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=100.00  E-value=2.6e-39  Score=273.13  Aligned_cols=201  Identities=20%  Similarity=0.190  Sum_probs=167.8

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|++| ||||+      +|||+++   +.+|++.|+.|+.  |+.+++++..    +.  ..++.+++||++|+++++++
T Consensus         2 nK~vl-VTGas------~GIG~ai---a~~la~~Ga~V~~~~~~~~~~~~~~----~~--~~~~~~~~~Dv~~~~~v~~~   65 (247)
T 3ged_A            2 NRGVI-VTGGG------HGIGKQI---CLDFLEAGDKVCFIDIDEKRSADFA----KE--RPNLFYFHGDVADPLTLKKF   65 (247)
T ss_dssp             CCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHH----TT--CTTEEEEECCTTSHHHHHHH
T ss_pred             CCEEE-EecCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHH----Hh--cCCEEEEEecCCCHHHHHHH
Confidence            47888 99999      9999999   7778888888764  8877665543    33  45788999999999999999


Q ss_pred             HHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++.+++++||+||||||+.  .++.+.+.++|++.+++|+.|+|+++++++|+|.+++   |+||++||..+..+.  
T Consensus        66 v~~~~~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~---G~IInisS~~~~~~~--  140 (247)
T 3ged_A           66 VEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK---GRIINIASTRAFQSE--  140 (247)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CEEEEECCGGGTSCC--
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CcEEEEeecccccCC--
Confidence            999999999999999999986  3567889999999999999999999999999998754   899999999888765  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhcc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRV  259 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~  259 (292)
                                +       ...+|++||+++..|++++|.|+.+ |||||+|+||+|+ ++......     ......  .
T Consensus       141 ----------~-------~~~~Y~asKaal~~ltk~lA~ela~-~IrVN~I~PG~i~t~~~~~~~~-----~~~~~~--P  195 (247)
T 3ged_A          141 ----------P-------DSEAYASAKGGIVALTHALAMSLGP-DVLVNCIAPGWINVTEQQEFTQ-----EDCAAI--P  195 (247)
T ss_dssp             ----------T-------TCHHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEEECSBCCCC---CCH-----HHHHTS--T
T ss_pred             ----------C-------CCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEecCcCCCCCcHHHHH-----HHHhcC--C
Confidence                      3       6789999999999999999999987 9999999999999 87655422     222222  2


Q ss_pred             ccccCCHHHhhc
Q psy4251         260 RPVTNFQVDLTG  271 (292)
Q Consensus       260 ~~~~~~~~~~a~  271 (292)
                      .....+|+|.|.
T Consensus       196 l~R~g~pediA~  207 (247)
T 3ged_A          196 AGKVGTPKDISN  207 (247)
T ss_dssp             TSSCBCHHHHHH
T ss_pred             CCCCcCHHHHHH
Confidence            233568998887

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=100.00  E-value=1.2e-39  Score=273.55  Aligned_cols=221  Identities=14%  Similarity=0.110  Sum_probs=176.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .++||+++ ||||+      +|||+++   +..|+++|+.|+.  |+.+++++       . .+.++..+++|++|++++
T Consensus         8 lf~GK~al-VTGas------~GIG~ai---a~~la~~Ga~Vv~~~~~~~~~~~-------~-~~~~~~~~~~Dv~~~~~v   69 (242)
T 4b79_A            8 IYAGQQVL-VTGGS------SGIGAAI---AMQFAELGAEVVALGLDADGVHA-------P-RHPRIRREELDITDSQRL   69 (242)
T ss_dssp             TTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSTTSTTS-------C-CCTTEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHhh-------h-hcCCeEEEEecCCCHHHH
Confidence            36899999 99999      9999999   7778888988874  76554432       1 146899999999999998


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++    ++++||+||||||+..+..+.+.++|++.+++|+.|+|+++++++|+|+++ .  |+||++||..+..+. 
T Consensus        70 ~~~~~----~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~-~--G~IVnisS~~~~~~~-  141 (242)
T 4b79_A           70 QRLFE----ALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR-G--GSILNIASMYSTFGS-  141 (242)
T ss_dssp             HHHHH----HCSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-C--EEEEEECCGGGTSCC-
T ss_pred             HHHHH----hcCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-C--CeEEEEeeccccCCC-
Confidence            88765    479999999999998878888999999999999999999999999999765 4  999999999888765 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cccchhhhhh
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TPVRTFSWIS  257 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~~~~~~~~~  257 (292)
                                 +       ...+|++||+++.+|++++|.|+.++|||||+|+||+|+ +|.+...... ....+.... 
T Consensus       142 -----------~-------~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~-  202 (242)
T 4b79_A          142 -----------A-------DRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRT-  202 (242)
T ss_dssp             -----------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTC-
T ss_pred             -----------C-------CCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcC-
Confidence                       3       678999999999999999999999999999999999999 9887654321 111122222 


Q ss_pred             ccccccCCHHHhhc------ccccCCCCCcccc-CCcc
Q psy4251         258 RVRPVTNFQVDLTG------TAEKVGLSGLPDS-EWMW  288 (292)
Q Consensus       258 ~~~~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w  288 (292)
                       ....+.+|+|.|.      ++.....+|+.+. |.-|
T Consensus       203 -PlgR~g~peeiA~~v~fLaSd~a~~iTG~~l~VDGG~  239 (242)
T 4b79_A          203 -PLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGY  239 (242)
T ss_dssp             -TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred             -CCCCCcCHHHHHHHHHHHhCchhcCccCceEEECccH
Confidence             2223578999987      7778888998663 5544

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=100.00  E-value=5.5e-38  Score=268.15  Aligned_cols=232  Identities=9%  Similarity=-0.039  Sum_probs=188.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          21 STYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      .+|+||++| ||||+      +  |||+++   +..|+++|+.|+  .|+.+.++++.+.+.+.. +.++.+++||++|+
T Consensus         2 ~~l~gK~al-VTGaa------~~~GIG~ai---A~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~   70 (256)
T 4fs3_A            2 LNLENKTYV-IMGIA------NKRSIAFGV---AKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSD   70 (256)
T ss_dssp             CCCTTCEEE-EECCC------STTCHHHHH---HHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCH
T ss_pred             cCCCCCEEE-EECCC------CCchHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCH
Confidence            478999999 99976      5  999999   666778888876  488888888887776653 45899999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      ++++++++++.+++++||+||||||+..      +..+.+.++|+..+++|+.+++.+++.+.|++++  .  |+||++|
T Consensus        71 ~~v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~--~--G~IVnis  146 (256)
T 4fs3_A           71 EEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPE--G--GSIVATT  146 (256)
T ss_dssp             HHHHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTT--C--EEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc--C--CEEEEEe
Confidence            9999999999999999999999999753      2345677889999999999999999999887754  3  9999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       ....|++||+++.+|++++|.|+.++|||||+|+||+|+ ++.+.....   
T Consensus       147 S~~~~~~~------------~-------~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~---  204 (256)
T 4fs3_A          147 YLGGEFAV------------Q-------NYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGF---  204 (256)
T ss_dssp             CGGGTSCC------------T-------TTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTH---
T ss_pred             ccccccCc------------c-------cchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCC---
Confidence            99888765            3       678999999999999999999999999999999999999 888765321   


Q ss_pred             cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         250 VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       250 ~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      ......+..  ......+|+|.|.      ++....++|+.+ .|.-|+
T Consensus       205 ~~~~~~~~~~~Pl~R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG~~  253 (256)
T 4fs3_A          205 NTILKEIKERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFH  253 (256)
T ss_dssp             HHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred             HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCEEEECcCHH
Confidence            122222211  2223568999987      677788899866 355453

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=100.00  E-value=2.1e-37  Score=264.63  Aligned_cols=229  Identities=16%  Similarity=0.116  Sum_probs=189.4

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.+
T Consensus         7 ~~~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~   74 (256)
T 3gaf_A            7 PFHLNDAVAI-VTGAA------AGIGRAI---AGTFAKAGASVVVTDLKSEGAEAVAAAIRQA--GGKAIGLECNVTDEQ   74 (256)
T ss_dssp             TTCCTTCEEE-ECSCS------SHHHHHH---HHHHHHHTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHH
Confidence            3678999999 99999      9999999   555667777765  48999999999998776  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCC-CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGL-GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~-~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++++.++++++|+||||||+... ..+.+.++|+..+++|+.|+++++++++|+|++++.  ++||++||..+..
T Consensus        75 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~~  152 (256)
T 3gaf_A           75 HREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGG--GAILNISSMAGEN  152 (256)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCGGGTC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEEcCHHHcC
Confidence            9999999999999999999999998742 237788999999999999999999999999988777  9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+..........+...
T Consensus       153 ~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~  213 (256)
T 3gaf_A          153 TN------------V-------RMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKH  213 (256)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTT
T ss_pred             CC------------C-------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCHHHHHHHHhc
Confidence            65            2       678999999999999999999999999999999999999 887654221001111111


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .  ......+|++.|.      ++.....+|+.+
T Consensus       214 ~--p~~r~~~~~dva~~~~~L~s~~~~~itG~~i  245 (256)
T 3gaf_A          214 T--PLGRLGEAQDIANAALFLCSPAAAWISGQVL  245 (256)
T ss_dssp             C--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             C--CCCCCCCHHHHHHHHHHHcCCcccCccCCEE
Confidence            1  1223568899887      556677788866

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=100.00  E-value=6.2e-37  Score=263.02  Aligned_cols=232  Identities=15%  Similarity=0.066  Sum_probs=192.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+..++.++.++++|++|.++
T Consensus         4 ~~l~~k~~l-VTGas------~GIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~   73 (265)
T 3lf2_A            4 YDLSEAVAV-VTGGS------SGIGLAT---VELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQ   73 (265)
T ss_dssp             CCCTTCEEE-EETCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHH
T ss_pred             cCcCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHH
Confidence            578999999 99999      9999999   666777787776  49999999999999876656679999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|.+++.  ++||++||..+..
T Consensus        74 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~  151 (265)
T 3lf2_A           74 VRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRAD--AAIVCVNSLLASQ  151 (265)
T ss_dssp             HHHHHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--EEEEEEEEGGGTS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--eEEEEECCcccCC
Confidence            99999999999999999999999863  5667899999999999999999999999999988777  9999999998877


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-----Ccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-----TPV  250 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-----~~~  250 (292)
                      +.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|+ ++.+......     ...
T Consensus       152 ~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~  212 (265)
T 3lf2_A          152 PE------------P-------HMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWA  212 (265)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHH
T ss_pred             CC------------C-------CchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHH
Confidence            65            3       678999999999999999999999999999999999999 8876543210     001


Q ss_pred             chhhhhhc----cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISR----VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~----~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+...+..    ......+|+|.|.      ++.....+|+.+
T Consensus       213 ~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i  255 (265)
T 3lf2_A          213 QWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSHI  255 (265)
T ss_dssp             HHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEE
T ss_pred             HHHHHHhhccCCCcCCCcCHHHHHHHHHHHhCchhcCcCCCEE
Confidence            11111100    1223458999987      566777888866

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=100.00  E-value=2.8e-38  Score=269.79  Aligned_cols=221  Identities=14%  Similarity=0.086  Sum_probs=177.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|+||+++ ||||+      +|||+++   +..|+++|+.|+.  |+.++          .  ..+..++++|++++++
T Consensus         7 ~~L~GK~al-VTGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~----------~--~~~~~~~~~Dv~~~~~   64 (261)
T 4h15_A            7 LNLRGKRAL-ITAGT------KGAGAAT---VSLFLELGAQVLTTARARPE----------G--LPEELFVEADLTTKEG   64 (261)
T ss_dssp             CCCTTCEEE-ESCCS------SHHHHHH---HHHHHHTTCEEEEEESSCCT----------T--SCTTTEEECCTTSHHH
T ss_pred             cCCCCCEEE-EeccC------cHHHHHH---HHHHHHcCCEEEEEECCchh----------C--CCcEEEEEcCCCCHHH
Confidence            479999999 99999      9999999   6678888988874  54321          1  2244578999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++.+++|+||+||||||+..    ++.+.+.++|++.+++|+.++++++++++|+|++++.  |+||++||..+
T Consensus        65 v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~--G~Iv~isS~~~  142 (261)
T 4h15_A           65 CAIVAEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGS--GVVVHVTSIQR  142 (261)
T ss_dssp             HHHHHHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCC--ceEEEEEehhh
Confidence            99999999999999999999999752    4567899999999999999999999999999998887  99999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc-----CC
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF-----GT  248 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~-----~~  248 (292)
                      ..+..           .       +...|++||+++..|++++|.|+.++|||||+|+||+|+ ++.......     +.
T Consensus       143 ~~~~~-----------~-------~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~  204 (261)
T 4h15_A          143 VLPLP-----------E-------STTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGT  204 (261)
T ss_dssp             TSCCT-----------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTC
T ss_pred             ccCCC-----------C-------ccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhcc
Confidence            76541           1       467899999999999999999999999999999999999 887653210     00


Q ss_pred             c----cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 P----VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~----~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .    .........  ......+|+|.|.      ++....++|+.+
T Consensus       205 ~~~~~~~~~~~~~~~~PlgR~g~peevA~~v~fLaS~~a~~itG~~i  251 (261)
T 4h15_A          205 DLEGGKKIIMDGLGGIPLGRPAKPEEVANLIAFLASDRAASITGAEY  251 (261)
T ss_dssp             CHHHHHHHHHHHTTCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             chhhHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCcEE
Confidence            0    011111101  1123568999987      677788899865

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=100.00  E-value=5.6e-37  Score=262.90  Aligned_cols=230  Identities=18%  Similarity=0.135  Sum_probs=189.7

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      +..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.. ..++.++++|++|.
T Consensus         4 ~m~~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~   72 (262)
T 3pk0_A            4 SMFDLQGRSVV-VTGGT------KGIGRGI---ATVFARAGANVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDR   72 (262)
T ss_dssp             CTTCCTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSH
T ss_pred             CccCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCH
Confidence            44678999999 99999      9999999   666777887776  499999999999987653 36899999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.+++.  ++||++||..+
T Consensus        73 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~--g~iv~isS~~~  150 (262)
T 3pk0_A           73 AQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGS--GRVVLTSSITG  150 (262)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSS--CEEEEECCSBT
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEEechhh
Confidence            9999999999999999999999999873  5677899999999999999999999999999988777  99999999877


Q ss_pred             c-cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         175 R-YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       175 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      . .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++....... ....+
T Consensus       151 ~~~~~------------~-------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~-~~~~~  210 (262)
T 3pk0_A          151 PITGY------------P-------GWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEE-YIASM  210 (262)
T ss_dssp             TTBCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTCHH-HHHHH
T ss_pred             ccCCC------------C-------CChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccCHH-HHHHH
Confidence            5 332            2       678999999999999999999999999999999999999 776543221 11111


Q ss_pred             hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....  ......+|++.|.      ++.....+|+.+
T Consensus       211 ~~~~--p~~r~~~p~dva~~v~~L~s~~~~~itG~~i  245 (262)
T 3pk0_A          211 ARSI--PAGALGTPEDIGHLAAFLATKEAGYITGQAI  245 (262)
T ss_dssp             HTTS--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HhcC--CCCCCcCHHHHHHHHHHHhCccccCCcCCEE
Confidence            1111  2223568999887      556667788866

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=100.00  E-value=7.2e-37  Score=263.27  Aligned_cols=228  Identities=17%  Similarity=0.146  Sum_probs=190.1

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.  +.++.++++|++|.+
T Consensus        23 ~~~l~~k~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~   90 (270)
T 3ftp_A           23 DKTLDKQVAI-VTGAS------RGIGRAI---ALELARRGAMVIGTATTEAGAEGIGAAFKQA--GLEGRGAVLNVNDAT   90 (270)
T ss_dssp             CCTTTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHHHH--TCCCEEEECCTTCHH
T ss_pred             ccCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEEeCCCHH
Confidence            3568999999 99999      9999999   666778887776  48999999999988876  568899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+.
T Consensus        91 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~  168 (270)
T 3ftp_A           91 AVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARG--GRIVNITSVVGS  168 (270)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CEEEEECchhhC
Confidence            999999999999999999999999864  4567789999999999999999999999999988777  999999999888


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||+++..|+++++.|+.++||+||+|+||+|. ++.+..... ....+..
T Consensus       169 ~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-~~~~~~~  228 (270)
T 3ftp_A          169 AGN------------P-------GQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQE-QQTALKT  228 (270)
T ss_dssp             HCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSCHH-HHHHHHT
T ss_pred             CCC------------C-------CchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcCHH-HHHHHHh
Confidence            765            3       678999999999999999999999999999999999999 887654221 0001111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|+      ++.....+|+.+
T Consensus       229 ~~--p~~r~~~pedvA~~v~~L~s~~~~~itG~~i  261 (270)
T 3ftp_A          229 QI--PLGRLGSPEDIAHAVAFLASPQAGYITGTTL  261 (270)
T ss_dssp             TC--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             cC--CCCCCCCHHHHHHHHHHHhCCCcCCccCcEE
Confidence            11  1123458999987      556677788866

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=100.00  E-value=9.1e-37  Score=259.51  Aligned_cols=224  Identities=16%  Similarity=0.154  Sum_probs=186.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.     .+..++++|++|+++
T Consensus         5 ~~l~gk~~l-VTGas------~gIG~a~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~   69 (248)
T 3op4_A            5 MNLEGKVAL-VTGAS------RGIGKAI---AELLAERGAKVIGTATSESGAQAISDYLG-----DNGKGMALNVTNPES   69 (248)
T ss_dssp             TCCTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----ccceEEEEeCCCHHH
Confidence            568899999 99999      9999999   666778887776  488888888877763     357889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|.+++.  ++||++||..+..
T Consensus        70 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~--g~iv~isS~~~~~  147 (248)
T 3op4_A           70 IEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQ--GRIINVGSVVGTM  147 (248)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CEEEEEcchhhcC
Confidence            99999999999999999999999874  4567789999999999999999999999999988777  9999999998887


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+..... ........
T Consensus       148 ~~------------~-------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~-~~~~~~~~  207 (248)
T 3op4_A          148 GN------------A-------GQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDE-QRTATLAQ  207 (248)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCHH-HHHHHHHT
T ss_pred             CC------------C-------CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCHH-HHHHHHhc
Confidence            65            3       678999999999999999999999999999999999999 887654321 00111111


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .  ......+|++.|+      ++.....+|+.+
T Consensus       208 ~--p~~r~~~p~dva~~v~~L~s~~~~~itG~~i  239 (248)
T 3op4_A          208 V--PAGRLGDPREIASAVAFLASPEAAYITGETL  239 (248)
T ss_dssp             C--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             C--CCCCCcCHHHHHHHHHHHcCCccCCccCcEE
Confidence            1  2223568999887      566677788866

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=100.00  E-value=1.1e-36  Score=262.28  Aligned_cols=227  Identities=13%  Similarity=0.146  Sum_probs=190.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+++++..+++.+.  +.++.++++|++|.++
T Consensus        22 ~~l~gk~~l-VTGas------~gIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~   89 (271)
T 4ibo_A           22 FDLGGRTAL-VTGSS------RGLGRAM---AEGLAVAGARILINGTDPSRVAQTVQEFRNV--GHDAEAVAFDVTSESE   89 (271)
T ss_dssp             GCCTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEECCSCHHHHHHHHHHHHHT--TCCEEECCCCTTCHHH
T ss_pred             cCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHH
Confidence            568999999 99999      9999999   6667788888774  8899999999999776  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+..
T Consensus        90 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iV~isS~~~~~  167 (271)
T 4ibo_A           90 IIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGY--GKIVNIGSLTSEL  167 (271)
T ss_dssp             HHHHHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEEccHHhCC
Confidence            99999999999999999999999863  4567789999999999999999999999999988777  9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+.....   ..+..+
T Consensus       168 ~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~---~~~~~~  225 (271)
T 4ibo_A          168 AR------------A-------TVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDN---PEFDAW  225 (271)
T ss_dssp             BC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHC---HHHHHH
T ss_pred             CC------------C-------CchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccC---HHHHHH
Confidence            65            2       678999999999999999999999999999999999999 887664221   011111


Q ss_pred             hhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +..  ......+|+|.|.      ++.....+|+.+
T Consensus       226 ~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i  261 (271)
T 4ibo_A          226 VKARTPAKRWGKPQELVGTAVFLSASASDYVNGQII  261 (271)
T ss_dssp             HHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEE
Confidence            111  2223568888887      556667788865

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=100.00  E-value=2.3e-36  Score=256.72  Aligned_cols=225  Identities=15%  Similarity=0.154  Sum_probs=187.2

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +.+|+++ ||||+      +|||+++   +.+|+++|+.|+.   ++.+++++..+++.+.  +.++.++++|++|.+++
T Consensus         2 l~~k~~l-VTGas------~gIG~~i---a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v   69 (246)
T 3osu_A            2 KMTKSAL-VTGAS------RGIGRSI---ALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK--GVDSFAIQANVADADEV   69 (246)
T ss_dssp             CCSCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TSCEEEEECCTTCHHHH
T ss_pred             CCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHH
Confidence            5688999 99999      9999999   6667788888763   4678888888888776  56899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+..+
T Consensus        70 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~  147 (246)
T 3osu_A           70 KAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRS--GAIINLSSVVGAVG  147 (246)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCHHHHHC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CEEEEEcchhhcCC
Confidence            9999999999999999999999874  4567889999999999999999999999999988777  99999999988876


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+..... ....+....
T Consensus       148 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~~  207 (246)
T 3osu_A          148 N------------P-------GQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDE-LKEQMLTQI  207 (246)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSCHH-HHHHHHTTC
T ss_pred             C------------C-------CChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccCHH-HHHHHHhcC
Confidence            5            3       678999999999999999999999999999999999999 887654321 111111111


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ......+|++.|.      ++.....+|+.+
T Consensus       208 --p~~r~~~~~dva~~v~~l~s~~~~~itG~~i  238 (246)
T 3osu_A          208 --PLARFGQDTDIANTVAFLASDKAKYITGQTI  238 (246)
T ss_dssp             --TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             --CCCCCcCHHHHHHHHHHHhCccccCCCCCEE
Confidence              2223568898887      555667788865

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=100.00  E-value=2.5e-36  Score=259.77  Aligned_cols=224  Identities=13%  Similarity=0.175  Sum_probs=188.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-CHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-CWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  | +.+.+++..+++.+.  +.++.++++|++|.+
T Consensus        24 ~~l~~k~vl-VTGas------~gIG~ai---a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~   91 (269)
T 4dmm_A           24 LPLTDRIAL-VTGAS------RGIGRAI---ALELAAAGAKVAVNYASSAGAADEVVAAIAAA--GGEAFAVKADVSQES   91 (269)
T ss_dssp             CTTTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHH
T ss_pred             cCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc--CCcEEEEECCCCCHH
Confidence            568999999 99999      9999999   6667788887763  5 788888888888766  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+.
T Consensus        92 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~  169 (269)
T 4dmm_A           92 EVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRS--GRIINIASVVGE  169 (269)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEECchhhc
Confidence            999999999999999999999999874  4567789999999999999999999999999988777  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+.....    .+..
T Consensus       170 ~~~------------~-------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~----~~~~  226 (269)
T 4dmm_A          170 MGN------------P-------GQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSELAAE----KLLE  226 (269)
T ss_dssp             HCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHHHHH----HHGG
T ss_pred             CCC------------C-------CchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccccccHH----HHHh
Confidence            765            3       678999999999999999999999999999999999999 887664321    2222


Q ss_pred             hhhccccccCCHHHhhc-------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG-------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~-------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|.       .+.....+|+.+
T Consensus       227 ~~--p~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i  260 (269)
T 4dmm_A          227 VI--PLGRYGEAAEVAGVVRFLAADPAAAYITGQVI  260 (269)
T ss_dssp             GC--TTSSCBCHHHHHHHHHHHHHCGGGGGCCSCEE
T ss_pred             cC--CCCCCCCHHHHHHHHHHHhCCcccCCCcCCEE
Confidence            22  2233568898887       335667788866

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=100.00  E-value=1.6e-36  Score=257.83  Aligned_cols=225  Identities=19%  Similarity=0.122  Sum_probs=186.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+++++..+++     +.++.++++|++|.++
T Consensus         2 ~~l~gk~vl-VTGas------~gIG~a~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~   66 (247)
T 3rwb_A            2 ERLAGKTAL-VTGAA------QGIGKAI---AARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAADISDPGS   66 (247)
T ss_dssp             CTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEECCCCTTCHHH
T ss_pred             CCcCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEcCCCCHHH
Confidence            568899999 99999      9999999   6667788887764  8888888877776     4588999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|.+++ .  ++||++||..+.
T Consensus        67 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~  144 (247)
T 3rwb_A           67 VKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKA--GRVISIASNTFF  144 (247)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--EEEEEECCTHHH
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC--cEEEEECchhhc
Confidence            99999999999999999999999873  456778999999999999999999999999998765 6  899999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||+++..|+++++.|+.++||+||+|+||+|+ ++.+..... ....+..
T Consensus       145 ~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~-~~~~~~~  204 (247)
T 3rwb_A          145 AGT------------P-------NMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHN-EAFGFVE  204 (247)
T ss_dssp             HTC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGG-GGHHHHH
T ss_pred             cCC------------C-------CchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChh-HHHHHHh
Confidence            765            3       678999999999999999999999999999999999999 877654322 1111111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .. .......+|++.|.      ++.....+|+.+
T Consensus       205 ~~-~~~~r~~~pedva~~v~~L~s~~~~~itG~~i  238 (247)
T 3rwb_A          205 ML-QAMKGKGQPEHIADVVSFLASDDARWITGQTL  238 (247)
T ss_dssp             HH-SSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             cc-cccCCCcCHHHHHHHHHHHhCccccCCCCCEE
Confidence            11 01223568999987      566667788866

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.6e-36  Score=259.96  Aligned_cols=230  Identities=19%  Similarity=0.145  Sum_probs=186.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.++
T Consensus        24 ~~~~~k~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~   91 (283)
T 3v8b_A           24 MNQPSPVAL-ITGAG------SGIGRAT---ALALAADGVTVGALGRTRTEVEEVADEIVGA--GGQAIALEADVSDELQ   91 (283)
T ss_dssp             ---CCCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHTTT--TCCEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence            567899999 99999      9999999   666777887776  49999999999988765  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+.   .+..+.+.++|++.+++|+.|+++++++++|+|++++.  ++||++||..+.
T Consensus        92 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~Iv~isS~~~~  169 (283)
T 3v8b_A           92 MRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGG--GAIVVVSSINGT  169 (283)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCSBTT
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--ceEEEEcChhhc
Confidence            9999999999999999999999985   35678899999999999999999999999999988777  999999998776


Q ss_pred             c--ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc--
Q psy4251         176 Y--SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV--  250 (292)
Q Consensus       176 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~--  250 (292)
                      .  +.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|+ ++.+.........  
T Consensus       170 ~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~  230 (283)
T 3v8b_A          170 RTFTT------------P-------GATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETA  230 (283)
T ss_dssp             TBCCS------------T-------TCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHS
T ss_pred             cCCCC------------C-------CchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhh
Confidence            5  32            2       678999999999999999999999999999999999999 8876542110000  


Q ss_pred             chhhhhhccc----cccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISRVR----PVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~~~----~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....+.....    ....+|+|.|.      ++.....+|+.+
T Consensus       231 ~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i  273 (283)
T 3v8b_A          231 IPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERARHVTGSPV  273 (283)
T ss_dssp             CCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             hhhhhhhhcCccccCCCCCHHHHHHHHHHHcCccccCCcCCEE
Confidence            0001110011    23468898887      566677888865

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=100.00  E-value=4.1e-36  Score=256.80  Aligned_cols=228  Identities=16%  Similarity=0.158  Sum_probs=184.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.++
T Consensus         2 ~~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~   69 (257)
T 3imf_A            2 NAMKEKVVI-ITGGS------SGMGKGM---ATRFAKEGARVVITGRTKEKLEEAKLEIEQF--PGQILTVQMDVRNTDD   69 (257)
T ss_dssp             CTTTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHCCS--TTCEEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence            468899999 99999      9999999   566777787776  49999999998888654  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh-cCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-GAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~-~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|.+ +..  ++||++||..+.
T Consensus        70 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~  147 (257)
T 3imf_A           70 IQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIK--GNIINMVATYAW  147 (257)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CEEEEECCGGGG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCC--cEEEEECchhhc
Confidence            99999999999999999999999863  4567889999999999999999999999999944 446  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc-CCCeEEEEecCCccc-ccccccc--ccCCccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY-KYKIALSSRHCCWKI-TVSKKWW--RFGTPVR  251 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~-~~gi~v~~v~PG~v~-~~~~~~~--~~~~~~~  251 (292)
                      .+.            +       +...|++||+++++|+++++.|+. +.||+||+|+||+|. ++.....  .......
T Consensus       148 ~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~  208 (257)
T 3imf_A          148 DAG------------P-------GVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKR  208 (257)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHH
T ss_pred             cCC------------C-------CcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHH
Confidence            664            3       678999999999999999999996 669999999999999 7654321  1111112


Q ss_pred             hhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +....  ......+|++.|.      ++.....+|+.+
T Consensus       209 ~~~~~--p~~r~~~pedvA~~v~~L~s~~~~~itG~~i  244 (257)
T 3imf_A          209 TIQSV--PLGRLGTPEEIAGLAYYLCSDEAAYINGTCM  244 (257)
T ss_dssp             HHTTS--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHhcC--CCCCCcCHHHHHHHHHHHcCchhcCccCCEE
Confidence            22111  2223568999887      556667788866

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=100.00  E-value=6.6e-36  Score=256.85  Aligned_cols=242  Identities=13%  Similarity=0.105  Sum_probs=189.8

Q ss_pred             CCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          18 HPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        18 ~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      .|..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+..++.++.++++|++|
T Consensus         6 ~~~~~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   75 (267)
T 1iy8_A            6 SPTTRFTDRVVL-ITGGG------SGLGRAT---AVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD   75 (267)
T ss_dssp             ----CCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS
T ss_pred             CCCccCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            344678999999 99999      9999999   556667787765  48999998888888776556689999999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      .++++++++++.++++++|+||||||+..   +..+.+.++|++.+++|+.|++.++++++|.|.+++.  ++||++||.
T Consensus        76 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~  153 (267)
T 1iy8_A           76 EAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGS--GMVVNTASV  153 (267)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CEEEEEcch
Confidence            99999999999999999999999999863   3456788999999999999999999999999988776  999999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc--c-ccCC
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW--W-RFGT  248 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~--~-~~~~  248 (292)
                      .+..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+..  . ....
T Consensus       154 ~~~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~  214 (267)
T 1iy8_A          154 GGIRGI------------G-------NQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPEN  214 (267)
T ss_dssp             GGTSBC------------S-------SBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTC
T ss_pred             hhccCC------------C-------CCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhh
Confidence            877654            2       678999999999999999999999999999999999999 876542  1 1111


Q ss_pred             ccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc-cCCcccc
Q psy4251         249 PVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWHY  290 (292)
Q Consensus       249 ~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~~  290 (292)
                      .......+..  ......+|++.|.      ++.....+|+.+ .+.-|+.
T Consensus       215 ~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~~  265 (267)
T 1iy8_A          215 PRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSA  265 (267)
T ss_dssp             HHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTT
T ss_pred             hhhHHHHHhccCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence            1100001111  1122568999887      445556788866 3444443

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=100.00  E-value=5.7e-36  Score=256.04  Aligned_cols=224  Identities=13%  Similarity=0.074  Sum_probs=186.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE---EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY---QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~---~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +||+++ ||||+      +|||+++   +.+|+++|+.|+   .|+.+++++..+++.+.  +.++.++++|++|.++++
T Consensus         3 ~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~   70 (258)
T 3oid_A            3 QNKCAL-VTGSS------RGVGKAA---AIRLAENGYNIVINYARSKKAALETAEEIEKL--GVKVLVVKANVGQPAKIK   70 (258)
T ss_dssp             CCCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHH
T ss_pred             CCCEEE-EecCC------chHHHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHH
Confidence            588999 99999      9999999   666778887764   48888999999888765  568999999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.+++++||+||||||+.  .+..+.+.++|+..+++|+.|+++++++++|+|.+++.  ++||++||..+..+.
T Consensus        71 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~--g~iv~isS~~~~~~~  148 (258)
T 3oid_A           71 EMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGG--GHIVSISSLGSIRYL  148 (258)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC--EEEEEEEEGGGTSBC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEECchhhCCCC
Confidence            99999999999999999999975  34567889999999999999999999999999998777  999999999887654


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhh
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWIS  257 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~  257 (292)
                                  +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+.....   ........
T Consensus       149 ------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~---~~~~~~~~  206 (258)
T 3oid_A          149 ------------E-------NYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNR---EDLLEDAR  206 (258)
T ss_dssp             ------------T-------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTH---HHHHHHHH
T ss_pred             ------------C-------CcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccC---HHHHHHHH
Confidence                        2       678999999999999999999999999999999999999 887765321   11111111


Q ss_pred             c--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         258 R--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       258 ~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .  ......+|++.|.      ++.....+|+.+
T Consensus       207 ~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i  240 (258)
T 3oid_A          207 QNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTI  240 (258)
T ss_dssp             HHCTTSSCBCHHHHHHHHHHHTSSTTTTCCSCEE
T ss_pred             hcCCCCCCcCHHHHHHHHHHHhCcccCCccCCEE
Confidence            1  2223568999887      455566778766

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.2e-36  Score=259.78  Aligned_cols=229  Identities=14%  Similarity=0.099  Sum_probs=187.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.++++++.+++.+.  +.++.++++|++|.++
T Consensus         4 ~~l~gk~vl-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~   71 (280)
T 3tox_A            4 SRLEGKIAI-VTGAS------SGIGRAA---ALLFAREGAKVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEAL   71 (280)
T ss_dssp             CTTTTCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHH
T ss_pred             cCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHH
Confidence            357899999 99999      9999999   6667788888774  8999999999888654  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..   +..+.+.++|++.+++|+.|+++++++++|.|.++..  ++||++||..+.
T Consensus        72 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~  149 (280)
T 3tox_A           72 HEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGG--GSLTFTSSFVGH  149 (280)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCSBTT
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--CEEEEEcChhhC
Confidence            99999999999999999999999763   4567789999999999999999999999999998777  999999998776


Q ss_pred             -cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         176 -YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       176 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                       .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.........+ ...
T Consensus       150 ~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~-~~~  209 (280)
T 3tox_A          150 TAGF------------A-------GVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAP-ETR  209 (280)
T ss_dssp             TBCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCT-HHH
T ss_pred             cCCC------------C-------CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCH-HHH
Confidence             332            2       678999999999999999999999999999999999999 877652211111 111


Q ss_pred             hhhhcc--ccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRV--RPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~--~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+...  .....+|++.|.      ++.....+|+.+
T Consensus       210 ~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i  247 (280)
T 3tox_A          210 GFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAAL  247 (280)
T ss_dssp             HHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHhccCccCCCcCHHHHHHHHHHHhCccccCCcCcEE
Confidence            111111  123568999887      555567788765

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.6e-36  Score=259.24  Aligned_cols=234  Identities=15%  Similarity=0.132  Sum_probs=190.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.. +.++.++++|++|.++
T Consensus        16 ~~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~   84 (266)
T 4egf_A           16 LRLDGKRAL-ITGAT------KGIGADI---ARAFAAAGARLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDA   84 (266)
T ss_dssp             GCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTH
T ss_pred             cCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHH
Confidence            468999999 99999      9999999   666777887776  499999999998887633 5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.+++ .  ++||++||..+.
T Consensus        85 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~--g~iv~isS~~~~  162 (266)
T 4egf_A           85 PAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEG--GAIITVASAAAL  162 (266)
T ss_dssp             HHHHHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC--eEEEEEcchhhc
Confidence            99999999999999999999999874  456778899999999999999999999999998765 5  899999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cccchh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TPVRTF  253 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~~~~~  253 (292)
                      .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+...... ....+.
T Consensus       163 ~~~------------~-------~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~  223 (266)
T 4egf_A          163 APL------------P-------DHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMI  223 (266)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHH
T ss_pred             cCC------------C-------CChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHH
Confidence            664            2       678999999999999999999999999999999999999 8876543210 001111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc-cCCcc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMW  288 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w  288 (292)
                      ...  ......+|+|.|.      ++.....+|+.+ .|.-|
T Consensus       224 ~~~--p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~  263 (266)
T 4egf_A          224 ARI--PLGRFAVPHEVSDAVVWLASDAASMINGVDIPVDGGY  263 (266)
T ss_dssp             TTC--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred             hcC--CCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCCc
Confidence            111  2223568999887      566677888865 34444

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=100.00  E-value=1.6e-36  Score=262.30  Aligned_cols=235  Identities=13%  Similarity=0.092  Sum_probs=184.5

Q ss_pred             CCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccC
Q psy4251          16 LLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDL   93 (292)
Q Consensus        16 ~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl   93 (292)
                      .+.+...++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.  +.++.++++|+
T Consensus        15 ~~~~~~m~~~k~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv   82 (279)
T 3sju_A           15 VPRGSHMSRPQTAF-VTGVS------SGIGLAV---ARTLAARGIAVYGCARDAKNVSAAVDGLRAA--GHDVDGSSCDV   82 (279)
T ss_dssp             ----------CEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCEEEEECCT
T ss_pred             CCCcccccCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEECCC
Confidence            34445668899999 99999      9999999   666777787776  49999999999999776  56899999999


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHH--HHHhcCCCCcEEEEE
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLEN--ALIKGAKLFARVVVV  169 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~--~l~~~~~~~~~iV~v  169 (292)
                      +|.++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|  .|.+++.  ++||++
T Consensus        83 ~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~--g~iV~i  160 (279)
T 3sju_A           83 TSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGW--GRIVNI  160 (279)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTC--EEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCC--cEEEEE
Confidence            9999999999999999999999999999874  456778899999999999999999999999  5776666  999999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-  247 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-  247 (292)
                      ||..+..+.            +       +...|++||+++..|+++++.|+.++||+||+|+||+|. ++.+...... 
T Consensus       161 sS~~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~  221 (279)
T 3sju_A          161 ASTGGKQGV------------M-------YAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYA  221 (279)
T ss_dssp             CCGGGTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCC
T ss_pred             CChhhccCC------------C-------CChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhh
Confidence            999887765            2       678999999999999999999999999999999999999 8876532100 


Q ss_pred             -----Cccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         248 -----TPVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       248 -----~~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                           ........+..  ......+|++.|.      ++.....+|+.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i  270 (279)
T 3sju_A          222 RHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYLVTDAAASITAQAL  270 (279)
T ss_dssp             SSSCCCHHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSSGGGGCCSCEE
T ss_pred             hcccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCcCCcEE
Confidence                 01111111111  1223568999987      455566788866

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=100.00  E-value=8.5e-36  Score=257.53  Aligned_cols=230  Identities=15%  Similarity=0.126  Sum_probs=187.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-------------CHHHHHHHHHHHHhhCCCCc
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-------------CWDKANDAISKILTEKPSAQ   85 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-------------~~~~~~~~~~~l~~~~~~~~   85 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |             +.+++++..+++...  +.+
T Consensus         7 ~~l~~k~~l-VTGas------~GIG~a~---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   74 (277)
T 3tsc_A            7 GKLEGRVAF-ITGAA------RGQGRAH---AVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA--NRR   74 (277)
T ss_dssp             CTTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--TCC
T ss_pred             cccCCCEEE-EECCc------cHHHHHH---HHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCe
Confidence            468999999 99999      9999999   6667788888764  5             688888888888766  568


Q ss_pred             eEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CC
Q psy4251          86 CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KL  162 (292)
Q Consensus        86 ~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~  162 (292)
                      +.++++|++|.++++++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++ . 
T Consensus        75 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~-  153 (277)
T 3tsc_A           75 IVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRG-  153 (277)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC-
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCC-
Confidence            999999999999999999999999999999999999874  345778999999999999999999999999998764 5 


Q ss_pred             CcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         163 FARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       163 ~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                       ++||++||..+..+.            +       +...|++||+++..|+++++.|+.++||+||+|+||+|. ++.+
T Consensus       154 -g~iv~isS~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~  213 (277)
T 3tsc_A          154 -GSIILISSAAGMKMQ------------P-------FMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGS  213 (277)
T ss_dssp             -EEEEEECCGGGTSCC------------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGS
T ss_pred             -CEEEEEccHhhCCCC------------C-------CchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCccc
Confidence             899999999887665            3       678999999999999999999999999999999999999 8876


Q ss_pred             ccccc------CCccchhhhh-hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         242 KWWRF------GTPVRTFSWI-SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       242 ~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....      .........+ ...+....+|++.|.      ++.....+|+.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i  268 (277)
T 3tsc_A          214 GDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQI  268 (277)
T ss_dssp             HHHHHHHHHHHHTCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             chhhhhhhhcccccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEE
Confidence            41100      0000011111 012223678999987      566677888865

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=100.00  E-value=3.8e-36  Score=258.22  Aligned_cols=225  Identities=18%  Similarity=0.170  Sum_probs=180.0

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|.+
T Consensus        22 m~~l~gk~vl-VTGas------~gIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~   86 (266)
T 3grp_A           22 MFKLTGRKAL-VTGAT------GGIGEAI---ARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSANLSDRK   86 (266)
T ss_dssp             TTCCTTCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHH
T ss_pred             hhccCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEeecCCHH
Confidence            4578999999 99999      9999999   666778887776  48888888776655     468999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+.
T Consensus        87 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~Iv~isS~~~~  164 (266)
T 3grp_A           87 SIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRY--GRIINITSIVGV  164 (266)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCC---
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEECCHHHc
Confidence            999999999999999999999999874  4567788999999999999999999999999988777  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+..... ....+..
T Consensus       165 ~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~-~~~~~~~  224 (266)
T 3grp_A          165 VGN------------P-------GQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEK-QKEAIMA  224 (266)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCCHH-HHHHHHT
T ss_pred             CCC------------C-------CchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccCHH-HHHHHHh
Confidence            664            2       678999999999999999999999999999999999999 887654221 0111111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|.      ++.....+|+.+
T Consensus       225 ~~--p~~r~~~~edvA~~v~~L~s~~~~~itG~~i  257 (266)
T 3grp_A          225 MI--PMKRMGIGEEIAFATVYLASDEAAYLTGQTL  257 (266)
T ss_dssp             TC--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             cC--CCCCCcCHHHHHHHHHHHhCccccCccCCEE
Confidence            11  2223568898887      556667788865

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=100.00  E-value=2e-35  Score=253.69  Aligned_cols=230  Identities=11%  Similarity=0.004  Sum_probs=182.5

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcc-cchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYT-GLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~-GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..+++||+++ ||||+      + |||+++   +.+|+++|+.|+  .|+.+++++..+++.+.. +.++.++++|++|.
T Consensus        17 ~~~l~~k~vl-ITGas------g~GIG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~   85 (266)
T 3o38_A           17 HGLLKGKVVL-VTAAA------GTGIGSTT---ARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTST   85 (266)
T ss_dssp             CSTTTTCEEE-ESSCS------SSSHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCH
T ss_pred             ccCCCCCEEE-EECCC------CCchHHHH---HHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCH
Confidence            4568999999 99995      4 999999   556667787776  499999999999986653 46899999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSES  173 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~  173 (292)
                      ++++++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.+++.++++++|+|.++ ..  ++||++||..
T Consensus        86 ~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~--~~iv~~sS~~  163 (266)
T 3o38_A           86 EAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHG--GVIVNNASVL  163 (266)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCC--EEEEEECCGG
T ss_pred             HHHHHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC--eEEEEeCCHH
Confidence            9999999999999999999999999864  44577899999999999999999999999999876 45  8999999998


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      +..+.            +       +...|++||++++.|+++++.++.++||+||+|+||+|+ ++.+..........+
T Consensus       164 ~~~~~------------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~  224 (266)
T 3o38_A          164 GWRAQ------------H-------SQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSSELLDRL  224 (266)
T ss_dssp             GTCCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC---------------
T ss_pred             HcCCC------------C-------CCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCcHHHHHHH
Confidence            87664            2       678999999999999999999999999999999999999 887665332111122


Q ss_pred             hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....  ......+|++.|.      ++.....+|+.+
T Consensus       225 ~~~~--~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i  259 (266)
T 3o38_A          225 ASDE--AFGRAAEPWEVAATIAFLASDYSSYMTGEVV  259 (266)
T ss_dssp             --CC--TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HhcC--CcCCCCCHHHHHHHHHHHcCccccCccCCEE
Confidence            2211  2223568999987      555667788876

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=100.00  E-value=2e-35  Score=251.84  Aligned_cols=226  Identities=18%  Similarity=0.175  Sum_probs=187.3

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccC--CC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDL--CR   95 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl--s~   95 (292)
                      ...++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.. +.++.++++|+  +|
T Consensus         7 ~~~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~   75 (252)
T 3f1l_A            7 QDLLNDRIIL-VTGAS------DGIGREA---AMTYARYGATVILLGRNEEKLRQVASHINEET-GRQPQWFILDLLTCT   75 (252)
T ss_dssp             TTTTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SCCCEEEECCTTTCC
T ss_pred             ccccCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCCceEEEEecccCC
Confidence            3568999999 99999      9999999   666777787776  499999999999887663 34788999999  99


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      .++++++++++.++++++|+||||||+.   .+..+.+.++|++.+++|+.|+++++++++|+|++++.  ++||++||.
T Consensus        76 ~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~--g~iv~isS~  153 (252)
T 3f1l_A           76 SENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDA--GSLVFTSSS  153 (252)
T ss_dssp             HHHHHHHHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSS--CEEEEECCG
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC--CEEEEECCh
Confidence            9999999999999999999999999985   35677889999999999999999999999999998877  999999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      .+..+.            +       +...|++||++++.|+++++.|+.+. |+||+|+||+|+ ++.........+  
T Consensus       154 ~~~~~~------------~-------~~~~Y~asK~a~~~l~~~la~e~~~~-irvn~v~PG~v~t~~~~~~~~~~~~--  211 (252)
T 3f1l_A          154 VGRQGR------------A-------NWGAYAASKFATEGMMQVLADEYQQR-LRVNCINPGGTRTAMRASAFPTEDP--  211 (252)
T ss_dssp             GGTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTTTT-CEEEEEECCSBSSHHHHHHCTTCCG--
T ss_pred             hhccCC------------C-------CCchhHHHHHHHHHHHHHHHHHhcCC-cEEEEEecCcccCchhhhhCCccch--
Confidence            887665            2       67899999999999999999999886 999999999999 887654221111  


Q ss_pred             hhhhhhccccccCCHHHhhc------ccccCCCCCcccc-CCccc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPDS-EWMWH  289 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w~  289 (292)
                               ....+|++.|.      ++.....+|+.+. |.-|+
T Consensus       212 ---------~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~~  247 (252)
T 3f1l_A          212 ---------QKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRK  247 (252)
T ss_dssp             ---------GGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC--
T ss_pred             ---------hccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCcC
Confidence                     12347777776      5666677888663 44443

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=100.00  E-value=5.4e-36  Score=257.03  Aligned_cols=229  Identities=13%  Similarity=0.099  Sum_probs=188.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.++
T Consensus         7 ~~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~   74 (264)
T 3ucx_A            7 GLLTDKVVV-ISGVG------PALGTTL---ARRCAEQGADLVLAARTVERLEDVAKQVTDT--GRRALSVGTDITDDAQ   74 (264)
T ss_dssp             CTTTTCEEE-EESCC------TTHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCcCCcEEE-EECCC------cHHHHHH---HHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHH
Confidence            458899999 99999      9999999   666777887776  49999999999999876  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||..   .+..+.+.++|++.+++|+.++++++++++|.|.++.   ++||++||..+.
T Consensus        75 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~  151 (264)
T 3ucx_A           75 VAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK---GAVVNVNSMVVR  151 (264)
T ss_dssp             HHHHHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT---CEEEEECCGGGG
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEECcchhc
Confidence            9999999999999999999999885   3456778999999999999999999999999998754   899999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc------CC
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF------GT  248 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~------~~  248 (292)
                      .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+.....      ..
T Consensus       152 ~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~  212 (264)
T 3ucx_A          152 HSQ------------A-------KYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTS  212 (264)
T ss_dssp             CCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCC
T ss_pred             cCC------------C-------ccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCC
Confidence            765            2       678999999999999999999999999999999999999 876653210      00


Q ss_pred             ccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 PVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...+...+..  ......+|+|.|.      ++.....+|+.+
T Consensus       213 ~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i  255 (264)
T 3ucx_A          213 VEDIYNAAAAGSDLKRLPTEDEVASAILFMASDLASGITGQAL  255 (264)
T ss_dssp             HHHHHHHHHTTSSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHHHhccCCcccCCCHHHHHHHHHHHcCccccCCCCCEE
Confidence            0111111111  1223568898887      556677888866

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=100.00  E-value=4.3e-36  Score=255.95  Aligned_cols=213  Identities=10%  Similarity=0.040  Sum_probs=167.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.++
T Consensus         3 ~~~~~k~vl-VTGas------~GIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~   70 (252)
T 3h7a_A            3 LTPRNATVA-VIGAG------DYIGAEI---AKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDE   70 (252)
T ss_dssp             --CCSCEEE-EECCS------SHHHHHH---HHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHH
Confidence            357899999 99999      9999999   666777787776  48999999999999876  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++ +++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|++++.  ++||++||..+..
T Consensus        71 v~~~~~~~~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~  147 (252)
T 3h7a_A           71 VTAFLNAADAH-APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQ--GKIFFTGATASLR  147 (252)
T ss_dssp             HHHHHHHHHHH-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEEEEGGGTC
T ss_pred             HHHHHHHHHhh-CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEECCHHHcC
Confidence            99999999999 99999999999864  4567889999999999999999999999999988777  9999999998877


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEE-EEecCCccc-cccccccccCCccchhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIAL-SSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v-~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      +.            +       +...|++||+++.+|+++++.|+.+.||+| |+|+||+|+ ++.+..... ....+..
T Consensus       148 ~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~-~~~~~~~  207 (252)
T 3h7a_A          148 GG------------S-------GFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQ-MFGKDAL  207 (252)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------
T ss_pred             CC------------C-------CCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchh-hhhhhhh
Confidence            65            3       678999999999999999999999999999 999999999 888765332 1111111


Q ss_pred             hhhccccccCCHHHhhc
Q psy4251         255 WISRVRPVTNFQVDLTG  271 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~  271 (292)
                      ..  .. ...+|++.|.
T Consensus       208 ~~--~~-~~~~pedvA~  221 (252)
T 3h7a_A          208 AN--PD-LLMPPAAVAG  221 (252)
T ss_dssp             ---------CCHHHHHH
T ss_pred             cC--Cc-cCCCHHHHHH
Confidence            11  11 2679999987

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=100.00  E-value=5.4e-36  Score=259.28  Aligned_cols=231  Identities=13%  Similarity=0.030  Sum_probs=188.5

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCC-CCceEEEEccCCCh
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKP-SAQCIAMELDLCRL   96 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~   96 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+... +.++.++++|++|+
T Consensus         6 ~~~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~   75 (281)
T 3svt_A            6 QLSFQDRTYL-VTGGG------SGIGKGV---AAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNE   75 (281)
T ss_dssp             --CCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSH
T ss_pred             ccCcCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCH
Confidence            3578999999 99999      9999999   666777787776  4999999999999987632 23899999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      ++++++++++.++++++|+||||||+.   .+..+.+.++|++.+++|+.|+++++++++|.|.+++.  |+||++||..
T Consensus        76 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~  153 (281)
T 3svt_A           76 DETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGG--GSFVGISSIA  153 (281)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEECCHH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEEeCHH
Confidence            999999999999999999999999984   24567788999999999999999999999999988777  9999999998


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cccc
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TPVR  251 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~~~  251 (292)
                      +..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+...... ....
T Consensus       154 ~~~~~------------~-------~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~  214 (281)
T 3svt_A          154 ASNTH------------R-------WFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSD  214 (281)
T ss_dssp             HHSCC------------T-------TCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHH
T ss_pred             HcCCC------------C-------CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHH
Confidence            87664            2       677899999999999999999999999999999999999 8876542110 0111


Q ss_pred             hhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +....  ......+|++.|.      ++.....+|+.+
T Consensus       215 ~~~~~--p~~r~~~~~dva~~~~~l~s~~~~~itG~~~  250 (281)
T 3svt_A          215 YAMCT--PLPRQGEVEDVANMAMFLLSDAASFVTGQVI  250 (281)
T ss_dssp             HHHHC--SSSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHhcC--CCCCCCCHHHHHHHHHHHhCcccCCCCCCEE
Confidence            11111  2233568999887      455566778766

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=100.00  E-value=1.2e-35  Score=256.50  Aligned_cols=229  Identities=15%  Similarity=0.105  Sum_probs=185.5

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      +..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|.
T Consensus        21 ~~~~l~~k~vl-VTGas------~GIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~   85 (277)
T 4dqx_A           21 QSMDLNQRVCI-VTGGG------SGIGRAT---AELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGVRVDVSSA   85 (277)
T ss_dssp             -CCTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHH-----CTTEEEEECCTTCH
T ss_pred             ccCCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEecCCCH
Confidence            45678999999 99999      9999999   666777887776  48888888877764     45789999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+
T Consensus        86 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~  163 (277)
T 4dqx_A           86 KDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGG--GSIINTTSYTA  163 (277)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTC--EEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--cEEEEECchhh
Confidence            9999999999999999999999999863  4567889999999999999999999999999988777  99999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc-cCCccch
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR-FGTPVRT  252 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~-~~~~~~~  252 (292)
                      ..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++...... .......
T Consensus       164 ~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~  224 (277)
T 4dqx_A          164 TSAI------------A-------DRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKL  224 (277)
T ss_dssp             TSCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHH
T ss_pred             CcCC------------C-------CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHH
Confidence            7664            2       678999999999999999999999999999999999999 87443221 1111111


Q ss_pred             hhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...+..  ......+|++.|.      ++.....+|+.+
T Consensus       225 ~~~~~~~~~~~r~~~pedvA~~v~~L~s~~~~~itG~~i  263 (277)
T 4dqx_A          225 RSDFNARAVMDRMGTAEEIAEAMLFLASDRSRFATGSIL  263 (277)
T ss_dssp             HHHHHTTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHhcCcccCCcCHHHHHHHHHHHhCCccCCCcCCEE
Confidence            111100  2223568999887      555666788866

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=100.00  E-value=2e-36  Score=261.13  Aligned_cols=222  Identities=15%  Similarity=0.084  Sum_probs=178.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH-------HHHHHHHHHHhhCCCCceEEEEc
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD-------KANDAISKILTEKPSAQCIAMEL   91 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~-------~~~~~~~~l~~~~~~~~~~~~~~   91 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+       .+++..+++...  +.++.++++
T Consensus         2 ~~l~~k~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   69 (274)
T 3e03_A            2 LTLSGKTLF-ITGAS------RGIGLAI---ALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKC   69 (274)
T ss_dssp             CCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEEC
T ss_pred             CCCCCcEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeC
Confidence            468899999 99999      9999999   6667777877763  6644       256667777666  678999999


Q ss_pred             cCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy4251          92 DLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV  169 (292)
Q Consensus        92 Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v  169 (292)
                      |++|.++++++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|.+++.  ++||++
T Consensus        70 Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~iv~i  147 (274)
T 3e03_A           70 DIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPN--PHILTL  147 (274)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSS--CEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCC--ceEEEE
Confidence            999999999999999999999999999999863  4567788999999999999999999999999988777  999999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCC-ccc-cccccccccC
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCC-WKI-TVSKKWWRFG  247 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG-~v~-~~~~~~~~~~  247 (292)
                      ||..+..+.                 .+.+...|++||+++..|++++++|+.++||+||+|+|| ++. ++.+..... 
T Consensus       148 sS~~~~~~~-----------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~~~~~~~-  209 (274)
T 3e03_A          148 APPPSLNPA-----------------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAINMLPGV-  209 (274)
T ss_dssp             CCCCCCCHH-----------------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------CC-
T ss_pred             CChHhcCCC-----------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchhhhcccc-
Confidence            998776541                 011677899999999999999999999999999999999 578 777443221 


Q ss_pred             CccchhhhhhccccccCCHHHhhc------ccccCCCCCccccC
Q psy4251         248 TPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPDSE  285 (292)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~~~  285 (292)
                                 ......+|++.|.      ++.....+|+++.+
T Consensus       210 -----------~~~~~~~pedvA~~v~~l~s~~~~~itG~~i~~  242 (274)
T 3e03_A          210 -----------DAAACRRPEIMADAAHAVLTREAAGFHGQFLID  242 (274)
T ss_dssp             -----------CGGGSBCTHHHHHHHHHHHTSCCTTCCSCEEEH
T ss_pred             -----------cccccCCHHHHHHHHHHHhCccccccCCeEEEc
Confidence                       0112458888887      55667778887743

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=100.00  E-value=1.9e-35  Score=255.83  Aligned_cols=232  Identities=16%  Similarity=0.179  Sum_probs=186.5

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC------------HHHHHHHHHHHHhhCCCC
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC------------WDKANDAISKILTEKPSA   84 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~------------~~~~~~~~~~l~~~~~~~   84 (292)
                      +..+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+            .+.+++..+++.+.  +.
T Consensus         4 ~m~~l~~k~~l-VTGas------~gIG~a~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   71 (281)
T 3s55_A            4 SMADFEGKTAL-ITGGA------RGMGRSH---AVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT--GR   71 (281)
T ss_dssp             --CTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT--TC
T ss_pred             cccccCCCEEE-EeCCC------chHHHHH---HHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc--CC
Confidence            34678999999 99999      9999999   6667788887764  65            67778877777765  56


Q ss_pred             ceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCC
Q psy4251          85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL  162 (292)
Q Consensus        85 ~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~  162 (292)
                      ++.++++|++|.++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++. 
T Consensus        72 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-  150 (281)
T 3s55_A           72 RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNY-  150 (281)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-
Confidence            8999999999999999999999999999999999999864  4577899999999999999999999999999988777 


Q ss_pred             CcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         163 FARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       163 ~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                       ++||++||..+..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+
T Consensus       151 -g~iv~isS~~~~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~  210 (281)
T 3s55_A          151 -GRIVTVSSMLGHSAN------------F-------AQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTH  210 (281)
T ss_dssp             -EEEEEECCGGGGSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTS
T ss_pred             -CEEEEECChhhcCCC------------C-------CCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCcccc
Confidence             999999999887765            2       678999999999999999999999999999999999999 8876


Q ss_pred             ccccc---------CCccchh---hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         242 KWWRF---------GTPVRTF---SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       242 ~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....         .......   ........-..+|++.|.      ++.....+|+.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i  270 (281)
T 3s55_A          211 NDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVL  270 (281)
T ss_dssp             SHHHHHC-------CCHHHHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             chhhhccccccccccchhHHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEE
Confidence            42100         0000000   001011123468899887      555667788865

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=100.00  E-value=3.1e-36  Score=262.14  Aligned_cols=229  Identities=15%  Similarity=0.092  Sum_probs=188.4

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+.. ..++.++++|++|.+
T Consensus        36 m~~l~~k~vl-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~  104 (293)
T 3rih_A           36 MFDLSARSVL-VTGGT------KGIGRGI---ATVFARAGANVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPG  104 (293)
T ss_dssp             TTCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHH
T ss_pred             ccCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHH
Confidence            4568999999 99999      9999999   666777887776  488888888888886652 258999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+.
T Consensus       105 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~iV~isS~~~~  182 (293)
T 3rih_A          105 SCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR--GRVILTSSITGP  182 (293)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS--CEEEEECCSBTT
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--CEEEEEeChhhc
Confidence            999999999999999999999999873  4567899999999999999999999999999988777  999999998775


Q ss_pred             -cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         176 -YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       176 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                       .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+..... ....+.
T Consensus       183 ~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~-~~~~~~  242 (293)
T 3rih_A          183 VTGY------------P-------GWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEE-YISGMA  242 (293)
T ss_dssp             TBBC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTCHH-HHHHHH
T ss_pred             cCCC------------C-------CCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhccHH-HHHHHH
Confidence             433            2       678999999999999999999999999999999999999 876654221 011111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ......+|++.|.      ++.....+|+.+
T Consensus       243 ~~~--p~~r~~~p~dvA~~v~fL~s~~a~~itG~~i  276 (293)
T 3rih_A          243 RSI--PMGMLGSPVDIGHLAAFLATDEAGYITGQAI  276 (293)
T ss_dssp             TTS--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hcC--CCCCCCCHHHHHHHHHHHhCccccCCCCCEE
Confidence            111  2223568998887      566677888866

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.1e-36  Score=258.86  Aligned_cols=226  Identities=14%  Similarity=0.076  Sum_probs=177.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..++||+++ ||||+      +|||+++   +.+|+++|+.|+.   |+.+.++++.+++...  +.++.++++|++|.+
T Consensus        23 m~~~~k~~l-VTGas------~GIG~ai---a~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~   90 (267)
T 3u5t_A           23 MMETNKVAI-VTGAS------RGIGAAI---AARLASDGFTVVINYAGKAAAAEEVAGKIEAA--GGKALTAQADVSDPA   90 (267)
T ss_dssp             ----CCEEE-EESCS------SHHHHHH---HHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             cccCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHH
Confidence            457899999 99999      9999999   6667778887763   5677888888888766  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+  .  ++||++||..+.
T Consensus        91 ~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~--g~iv~isS~~~~  166 (267)
T 3u5t_A           91 AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRV--G--GRIINMSTSQVG  166 (267)
T ss_dssp             HHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE--E--EEEEEECCTHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--C--CeEEEEeChhhc
Confidence            999999999999999999999999873  4567788999999999999999999999999964  3  899999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++............+..
T Consensus       167 ~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~  227 (267)
T 3u5t_A          167 LLH------------P-------SYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAK  227 (267)
T ss_dssp             HCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------CHHHHHT
T ss_pred             cCC------------C-------CchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHHHHHHh
Confidence            654            3       678999999999999999999999999999999999999 88765322211111211


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|.      ++.....+|+.+
T Consensus       228 ~~--p~~r~~~pedvA~~v~~L~s~~~~~itG~~i  260 (267)
T 3u5t_A          228 LA--PLERLGTPQDIAGAVAFLAGPDGAWVNGQVL  260 (267)
T ss_dssp             SS--TTCSCBCHHHHHHHHHHHHSTTTTTCCSEEE
T ss_pred             cC--CCCCCcCHHHHHHHHHHHhCccccCccCCEE
Confidence            11  2223568999987      556667788865

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=100.00  E-value=1.5e-35  Score=256.30  Aligned_cols=230  Identities=17%  Similarity=0.151  Sum_probs=187.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-------------CHHHHHHHHHHHHhhCCCCc
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-------------CWDKANDAISKILTEKPSAQ   85 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-------------~~~~~~~~~~~l~~~~~~~~   85 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |             +.++++++.+++.+.  +.+
T Consensus        11 ~~l~gk~~l-VTGas------~gIG~a~---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   78 (280)
T 3pgx_A           11 GSLQGRVAF-ITGAA------RGQGRSH---AVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ--GRK   78 (280)
T ss_dssp             CTTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT--TCC
T ss_pred             cccCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--CCe
Confidence            568999999 99999      9999999   6667788888764  5             788888888888765  668


Q ss_pred             eEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CC
Q psy4251          86 CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KL  162 (292)
Q Consensus        86 ~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~  162 (292)
                      +.++++|++|.++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|.+++ . 
T Consensus        79 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-  157 (280)
T 3pgx_A           79 ALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNG-  157 (280)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSC-
T ss_pred             EEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC-
Confidence            999999999999999999999999999999999999874  456778999999999999999999999999998764 6 


Q ss_pred             CcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         163 FARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       163 ~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                       ++||++||..+..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+
T Consensus       158 -g~iv~isS~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~  217 (280)
T 3pgx_A          158 -GSIVVVSSSAGLKAT------------P-------GNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIE  217 (280)
T ss_dssp             -EEEEEECCGGGTSCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC
T ss_pred             -CEEEEEcchhhccCC------------C-------CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccc
Confidence             899999999887765            3       678999999999999999999999999999999999999 8876


Q ss_pred             cccc------cCCccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         242 KWWR------FGTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       242 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....      ..............+....+|+|.|.      ++.....+|+.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i  271 (280)
T 3pgx_A          218 PEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQI  271 (280)
T ss_dssp             HHHHHHHHHHCGGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGTTCSSCEE
T ss_pred             hhhhhhhhhcCchhhhhhhhcccCCCCCCCHHHHHHHHHHHhCccccCCCCCEE
Confidence            4210      00000000000001112458999987      556667788866

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=100.00  E-value=5.8e-36  Score=258.58  Aligned_cols=230  Identities=13%  Similarity=0.078  Sum_probs=188.1

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.. +.++.++++|++|.+
T Consensus        22 ~~~l~~k~~l-VTGas------~GIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~   90 (277)
T 4fc7_A           22 PDLLRDKVAF-ITGGG------SGIGFRI---AEIFMRHGCHTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPP   90 (277)
T ss_dssp             TTTTTTCEEE-EETTT------SHHHHHH---HHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHH
T ss_pred             ccccCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHH
Confidence            4568999999 99999      9999999   666778887776  489999989888886543 468999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.++..  ++||++||..+.
T Consensus        91 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~  168 (277)
T 4fc7_A           91 AVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHG--GVIVNITATLGN  168 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC--EEEEEECCSHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CEEEEECchhhC
Confidence            999999999999999999999999763  4567889999999999999999999999999877666  999999999888


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||+++..|+++++.|+.++||+||+|+||+|. ++.......  ......
T Consensus       169 ~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~--~~~~~~  227 (277)
T 4fc7_A          169 RGQ------------A-------LQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGG--PQASLS  227 (277)
T ss_dssp             HTC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSC--CHHHHH
T ss_pred             CCC------------C-------CcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccC--CHHHHH
Confidence            765            2       678999999999999999999999999999999999999 654322110  011111


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....  ......+|+|.|.      ++.....+|+.+
T Consensus       228 ~~~~~~p~~r~~~p~dvA~~v~fL~s~~~~~itG~~i  264 (277)
T 4fc7_A          228 TKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVL  264 (277)
T ss_dssp             HHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHhccCCCCCCcCHHHHHHHHHHHcCCccCCcCCCEE
Confidence            1111  1223568999887      566677888866

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=100.00  E-value=7.5e-36  Score=256.94  Aligned_cols=231  Identities=18%  Similarity=0.191  Sum_probs=185.7

Q ss_pred             CCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          18 HPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        18 ~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      ....+++||+++ ||||+      +|||+++   +.+|++.|+.|+.   |+.+.++++.+++.+.  +.++.++++|++
T Consensus        11 ~~~~~l~~k~~l-VTGas------~gIG~ai---a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   78 (270)
T 3is3_A           11 YIPGRLDGKVAL-VTGSG------RGIGAAV---AVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL--GSDAIAIKADIR   78 (270)
T ss_dssp             CCTTCCTTCEEE-ESCTT------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTT
T ss_pred             cCCCCcCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCCC
Confidence            344679999999 99999      9999999   6667788888764   5677888888888776  568999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      |.++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+  .  ++||++||.
T Consensus        79 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~--g~iv~isS~  154 (270)
T 3is3_A           79 QVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTE--G--GRIVLTSSN  154 (270)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT--T--CEEEEECCT
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--C--CeEEEEeCc
Confidence            999999999999999999999999999863  4567789999999999999999999999999975  3  899999998


Q ss_pred             cc-ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC---
Q psy4251         173 SH-RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG---  247 (292)
Q Consensus       173 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~---  247 (292)
                      .+ ..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|+ ++.+......   
T Consensus       155 ~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~  215 (270)
T 3is3_A          155 TSKDFSV------------P-------KHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPN  215 (270)
T ss_dssp             TTTTCCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTT
T ss_pred             hhccCCC------------C-------CCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhcccc
Confidence            73 3332            2       678999999999999999999999999999999999999 8876432100   


Q ss_pred             ----Cccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         248 ----TPVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       248 ----~~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                          ...........  ......+|++.|.      ++.....+|+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i  263 (270)
T 3is3_A          216 GTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVL  263 (270)
T ss_dssp             GGGSCHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             ccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCcEE
Confidence                00111111111  1223567999887      556667788865

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=100.00  E-value=3.2e-35  Score=256.61  Aligned_cols=231  Identities=13%  Similarity=0.077  Sum_probs=187.5

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC------------HHHHHHHHHHHHhhCCCCc
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC------------WDKANDAISKILTEKPSAQ   85 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~------------~~~~~~~~~~l~~~~~~~~   85 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|++  |+            .+++++..+++.+.  +.+
T Consensus        23 ~~~l~gk~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   90 (299)
T 3t7c_A           23 AGKVEGKVAF-ITGAA------RGQGRSH---AITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--GRR   90 (299)
T ss_dssp             CCTTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT--TCC
T ss_pred             ccccCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc--CCc
Confidence            4568999999 99999      9999999   6667788888764  54            78888888888776  568


Q ss_pred             eEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-C
Q psy4251          86 CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-K  161 (292)
Q Consensus        86 ~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~  161 (292)
                      +.++++|++|.++++++++++.+++++||+||||||+..   +..+.+.++|++.+++|+.|+++++++++|.|.+++ .
T Consensus        91 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~  170 (299)
T 3t7c_A           91 IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRG  170 (299)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSC
T ss_pred             eEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999864   256789999999999999999999999999987654 6


Q ss_pred             CCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         162 LFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       162 ~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                        ++||++||..+..+.            +       +...|++||+++..|+++++.|+.++||+||+|+||+|+ ++.
T Consensus       171 --g~Iv~isS~~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~  229 (299)
T 3t7c_A          171 --GSIVFTSSIGGLRGA------------E-------NIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPML  229 (299)
T ss_dssp             --EEEEEECCGGGTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTT
T ss_pred             --cEEEEECChhhccCC------------C-------CcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccc
Confidence              899999999887665            2       678999999999999999999999999999999999999 887


Q ss_pred             cccccc---------CCccchh--h-hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         241 KKWWRF---------GTPVRTF--S-WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       241 ~~~~~~---------~~~~~~~--~-~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +.....         .....+.  . .....+.-..+|+|.|.      ++.....+|+.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~fL~s~~a~~itG~~i  290 (299)
T 3t7c_A          230 LNEPTYRMFRPDLENPTVEDFQVASRQMHVLPIPYVEPADISNAILFLVSDDARYITGVSL  290 (299)
T ss_dssp             SSHHHHHHHCTTSSSCCHHHHHHHHHHHSSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             cccchhhhhhhhhccchhhHHHHHhhhhcccCcCCCCHHHHHHHHHHHhCcccccCcCCEE
Confidence            642110         0000000  0 01011123458999987      566677888865

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=100.00  E-value=6.2e-36  Score=257.63  Aligned_cols=225  Identities=16%  Similarity=0.058  Sum_probs=183.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|.++
T Consensus         7 ~~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~   71 (271)
T 3tzq_B            7 AELENKVAI-ITGAC------GGIGLET---SRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHHVVDLTNEVS   71 (271)
T ss_dssp             CTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECTTSCHHHHHHHH-----CTTCEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCCeEEEECCCCCHHH
Confidence            568999999 99999      9999999   666777887776  48877777777666     4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCC----CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGL----GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~----~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++.++++++|+||||||+..+    ..+.+.++|++.+++|+.++++++++++|+|.+++.  ++||++||..+
T Consensus        72 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~iv~isS~~~  149 (271)
T 3tzq_B           72 VRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGG--GAIVNISSATA  149 (271)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEECCGGG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CEEEEECCHHH
Confidence            999999999999999999999998732    346788999999999999999999999999988877  99999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+..........+.
T Consensus       150 ~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~  210 (271)
T 3tzq_B          150 HAAY------------D-------MSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFA  210 (271)
T ss_dssp             TSBC------------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CHHHHHHHH
T ss_pred             cCCC------------C-------CChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCHHHHHHHH
Confidence            7665            2       678999999999999999999999999999999999999 8876322110111111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ......+|++.|.      ++.....+|+.+
T Consensus       211 ~~~--~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i  244 (271)
T 3tzq_B          211 THH--LAGRIGEPHEIAELVCFLASDRAAFITGQVI  244 (271)
T ss_dssp             TTS--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hcC--CCCCCcCHHHHHHHHHHHhCcccCCcCCCEE
Confidence            111  2223568999887      556667788866

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=100.00  E-value=3e-35  Score=255.26  Aligned_cols=231  Identities=15%  Similarity=0.142  Sum_probs=187.2

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC----------------HHHHHHHHHHHHhhC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC----------------WDKANDAISKILTEK   81 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~----------------~~~~~~~~~~l~~~~   81 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+                .+++++..+++... 
T Consensus         6 ~~~l~~k~~l-VTGas------~gIG~ai---a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   74 (286)
T 3uve_A            6 TGRVEGKVAF-VTGAA------RGQGRSH---AVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH-   74 (286)
T ss_dssp             CCTTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT-
T ss_pred             CcccCCCEEE-EeCCC------chHHHHH---HHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc-
Confidence            3568999999 99999      9999999   6667788888764  54                78888888888765 


Q ss_pred             CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh
Q psy4251          82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK  158 (292)
Q Consensus        82 ~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~  158 (292)
                       +.++.++++|++|.++++++++++.+++++||+||||||+..   +..+.+.++|++.+++|+.|+++++++++|+|.+
T Consensus        75 -~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~  153 (286)
T 3uve_A           75 -NRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIA  153 (286)
T ss_dssp             -TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             -CCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence             568999999999999999999999999999999999999864   2456789999999999999999999999999987


Q ss_pred             cC-CCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         159 GA-KLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       159 ~~-~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      +. .  ++||++||..+..+.            +       +...|++||+++..|+++++.|+.++||+||+|+||+|+
T Consensus       154 ~~~~--g~iv~isS~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~  212 (286)
T 3uve_A          154 GGRG--GSIILTSSVGGLKAY------------P-------HTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVK  212 (286)
T ss_dssp             HTSC--EEEEEECCGGGTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS
T ss_pred             CCCC--cEEEEECchhhccCC------------C-------CccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccc
Confidence            54 5  899999999887765            2       678999999999999999999999999999999999999


Q ss_pred             -ccccccccc---------CCccchh---hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         238 -TVSKKWWRF---------GTPVRTF---SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       238 -~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ++.+.....         ..+....   ......+.-..+|+|.|.      ++.....+|+.+
T Consensus       213 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~p~dvA~~v~fL~s~~a~~itG~~i  277 (286)
T 3uve_A          213 TPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLPIPWVEPIDISNAVLFFASDEARYITGVTL  277 (286)
T ss_dssp             STTTSSHHHHHHHCTTSSSCCHHHHHHHHHTTCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             CCcccccchhhhccccccccchhhHHHHHHhhhccCCCcCCHHHHHHHHHHHcCccccCCcCCEE
Confidence             887642100         0000000   011112223468899887      566677888865

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-36  Score=261.88  Aligned_cols=194  Identities=19%  Similarity=0.176  Sum_probs=170.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++|+.+.+.+..+..|+  .|+.++++++.+++.+..++.++.+++||++|.++
T Consensus        29 ~~l~~k~~l-VTGas------~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~  101 (287)
T 3rku_A           29 ERLAKKTVL-ITGAS------AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEK  101 (287)
T ss_dssp             HHHTTCEEE-EESTT------SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGG
T ss_pred             hhcCCCEEE-EecCC------ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHH
Confidence            457899999 99999      9999999555444433222444  59999999999999888777899999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+++++||+||||||+..   +..+.+.++|++.+++|+.|+++++++++|.|++++.  ++||++||..+.
T Consensus       102 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~IV~isS~~~~  179 (287)
T 3rku_A          102 IKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNS--GDIVNLGSIAGR  179 (287)
T ss_dssp             HHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCGGGT
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEECChhhc
Confidence            99999999999999999999999863   4567789999999999999999999999999988777  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .+.            +       +...|++||+++..|+++++.|+.+.||+||+|+||+|+ ++...
T Consensus       180 ~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~  228 (287)
T 3rku_A          180 DAY------------P-------TGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLV  228 (287)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHH
T ss_pred             CCC------------C-------CCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccc
Confidence            665            2       678999999999999999999999999999999999999 88643

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.9e-35  Score=255.32  Aligned_cols=227  Identities=16%  Similarity=0.152  Sum_probs=184.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|+++
T Consensus        25 ~~l~gk~vl-VTGas------~gIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~   89 (277)
T 3gvc_A           25 PDLAGKVAI-VTGAG------AGIGLAV---ARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAACRVDVSDEQQ   89 (277)
T ss_dssp             --CTTCEEE-ETTTT------STHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHH-----CSSCEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCcceEEEecCCCHHH
Confidence            568999999 99999      9999999   666778887776  48888888887776     4578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+..
T Consensus        90 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~Iv~isS~~~~~  167 (277)
T 3gvc_A           90 IIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGG--GAIVNLSSLAGQV  167 (277)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEEcchhhcc
Confidence            99999999999999999999999863  5667899999999999999999999999999988777  9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc---CCccch
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF---GTPVRT  252 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~---~~~~~~  252 (292)
                      +.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+.....   ......
T Consensus       168 ~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~  228 (277)
T 3gvc_A          168 AV------------G-------GTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGG  228 (277)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC------CC
T ss_pred             CC------------C-------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhhHHHHh
Confidence            65            2       678999999999999999999999999999999999999 887653221   011111


Q ss_pred             hhhh-hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWI-SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~-~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .... ........+|+|.|.      ++.....+|+.+
T Consensus       229 ~~~~~~~~~~r~~~pedvA~~v~~L~s~~a~~itG~~i  266 (277)
T 3gvc_A          229 ARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQ  266 (277)
T ss_dssp             HHHHHHHHHSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hhhhhhccccCCCCHHHHHHHHHHHcCCccCCccCcEE
Confidence            1100 001223568999887      556667788865

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=100.00  E-value=2.3e-35  Score=255.31  Aligned_cols=237  Identities=13%  Similarity=0.072  Sum_probs=184.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-CHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-CWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++.||+++ ||||+      +|||+++   +.+|+++|+.|+.  | +.+++++..+++.+.. +.++.++++|++|.+
T Consensus        21 ~~l~~k~~l-VTGas------~GIG~~i---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~   89 (281)
T 3v2h_A           21 QSMMTKTAV-ITGST------SGIGLAI---ARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPS   89 (281)
T ss_dssp             -CCTTCEEE-EETCS------SHHHHHH---HHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHH
T ss_pred             hccCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHH
Confidence            568899999 99999      9999999   6667788888764  5 6778888888886543 468999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+.
T Consensus        90 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~  167 (281)
T 3v2h_A           90 EIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGW--GRIINIASAHGL  167 (281)
T ss_dssp             HHHHHHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--CEEEEECCcccc
Confidence            999999999999999999999999863  4567789999999999999999999999999988777  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc-----
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP-----  249 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~-----  249 (292)
                      .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+........     
T Consensus       168 ~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~  228 (281)
T 3v2h_A          168 VAS------------P-------FKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGIT  228 (281)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----------------
T ss_pred             cCC------------C-------CchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCC
Confidence            665            2       678999999999999999999999999999999999999 887654221000     


Q ss_pred             -cchh-hhhhc--cccccCCHHHhhc------ccccCCCCCcccc-CCccc
Q psy4251         250 -VRTF-SWISR--VRPVTNFQVDLTG------TAEKVGLSGLPDS-EWMWH  289 (292)
Q Consensus       250 -~~~~-~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w~  289 (292)
                       .... ..+..  ......+|++.|.      ++.....+|+.+. |.-|+
T Consensus       229 ~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG~~  279 (281)
T 3v2h_A          229 EEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGWT  279 (281)
T ss_dssp             -----------CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTTGG
T ss_pred             HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCCcc
Confidence             0000 00100  1223568888887      5555667888663 54444

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=100.00  E-value=1.8e-36  Score=259.68  Aligned_cols=226  Identities=12%  Similarity=0.045  Sum_probs=178.4

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-----cCHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-----NCWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-----r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+.     |+.++++++.+++.+.  +.++.++++|++
T Consensus         6 ~~~l~~k~vl-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   73 (262)
T 3ksu_A            6 YHDLKNKVIV-IAGGI------KNLGALT---AKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLS   73 (262)
T ss_dssp             CSCCTTCEEE-EETCS------SHHHHHH---HHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCC
T ss_pred             ccCCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCC
Confidence            3578999999 99999      9999999   7778889988764     3567888888888766  668999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      |.++++++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.+  .  ++||++||.
T Consensus        74 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~--g~iv~isS~  149 (262)
T 3ksu_A           74 NEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNP--N--GHIITIATS  149 (262)
T ss_dssp             SHHHHHHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE--E--EEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcC--C--CEEEEEech
Confidence            999999999999999999999999999874  4567789999999999999999999999999843  3  899999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      .+..+.            +       +...|++||+++..|+++++.|+.++||+||+|+||+|+ ++.+..........
T Consensus       150 ~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~  210 (262)
T 3ksu_A          150 LLAAYT------------G-------FYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKESTAF  210 (262)
T ss_dssp             HHHHHH------------C-------CCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC-------
T ss_pred             hhccCC------------C-------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCchHHHHH
Confidence            877654            2       567899999999999999999999999999999999999 88765322111111


Q ss_pred             hhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +....  ......+|++.|.      ++ ....+|+.+
T Consensus       211 ~~~~~--~~~r~~~pedvA~~v~~L~s~-~~~itG~~i  245 (262)
T 3ksu_A          211 HKSQA--MGNQLTKIEDIAPIIKFLTTD-GWWINGQTI  245 (262)
T ss_dssp             -------CCCCSCCGGGTHHHHHHHHTT-TTTCCSCEE
T ss_pred             HHhcC--cccCCCCHHHHHHHHHHHcCC-CCCccCCEE
Confidence            11111  2223568888887      44 567788876

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=2.4e-35  Score=253.69  Aligned_cols=232  Identities=16%  Similarity=0.117  Sum_probs=184.1

Q ss_pred             CCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccC
Q psy4251          17 LHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDL   93 (292)
Q Consensus        17 ~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl   93 (292)
                      +-|...+++|+++ ||||+      +|||+++   +.+|++.|+.|++   ++.+..++..+++...  +.++.++++|+
T Consensus        17 ~~p~~~~~~k~vl-ITGas------~gIG~~~---a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl   84 (269)
T 3gk3_A           17 QGPGSMQAKRVAF-VTGGM------GGLGAAI---SRRLHDAGMAVAVSHSERNDHVSTWLMHERDA--GRDFKAYAVDV   84 (269)
T ss_dssp             -------CCCEEE-ETTTT------SHHHHHH---HHHHHTTTCEEEEEECSCHHHHHHHHHHHHTT--TCCCEEEECCT
T ss_pred             CCchhhhcCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCceEEEEecC
Confidence            3345568899999 99999      9999999   6667788887764   6677777777777654  56899999999


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      +|.++++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.+++.+++.++|.|.+++.  ++||++||
T Consensus        85 ~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--g~iv~isS  162 (269)
T 3gk3_A           85 ADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRF--GRIVNIGS  162 (269)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CEEEEeCC
Confidence            9999999999999999999999999999873  4567789999999999999999999999999988777  99999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV  250 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~  250 (292)
                      ..+..+.            +       +...|++||+++..|++++++++.++||+||+|+||+|+ ++.+.........
T Consensus       163 ~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~  223 (269)
T 3gk3_A          163 VNGSRGA------------F-------GQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVLEA  223 (269)
T ss_dssp             HHHHHCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------C
T ss_pred             hhhccCC------------C-------CcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchhHHHH
Confidence            9888765            3       678999999999999999999999999999999999999 8887654321111


Q ss_pred             chhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+....  ......+|++.|.      ++.....+|+.+
T Consensus       224 ~~~~~~--~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i  260 (269)
T 3gk3_A          224 KILPQI--PVGRLGRPDEVAALIAFLCSDDAGFVTGADL  260 (269)
T ss_dssp             CSGGGC--TTSSCBCHHHHHHHHHHHTSTTCTTCCSCEE
T ss_pred             HhhhcC--CcCCccCHHHHHHHHHHHhCCCcCCeeCcEE
Confidence            222222  2223458999887      445566788865

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=100.00  E-value=6.9e-36  Score=255.06  Aligned_cols=232  Identities=15%  Similarity=0.085  Sum_probs=185.0

Q ss_pred             CCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEcc
Q psy4251          16 LLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELD   92 (292)
Q Consensus        16 ~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~D   92 (292)
                      ++.+..++++|+++ ||||+      +|||+++   +.+|+++|+.|+.   |+.++.++..+++.+.  +.++.++++|
T Consensus         4 ~~~~~~~~~~k~vl-ITGas------~giG~~i---a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D   71 (256)
T 3ezl_A            4 HHHHHMVMSQRIAY-VTGGM------GGIGTSI---CQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL--GFDFYASEGN   71 (256)
T ss_dssp             ---------CEEEE-ETTTT------SHHHHHH---HHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT--TCCCEEEECC
T ss_pred             CCCCCCCCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCeeEEEecC
Confidence            34456778999999 99999      9999999   6667788887764   6666777777777665  5689999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          93 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        93 ls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      ++|.++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.+++.  ++||++|
T Consensus        72 v~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~is  149 (256)
T 3ezl_A           72 VGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGW--GRIINIS  149 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CEEEEEc
Confidence            99999999999999999999999999999874  4567889999999999999999999999999988877  9999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       +...|++||++++.|++++++++.++||+||+|+||+|. ++.+..... ..
T Consensus       150 S~~~~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~  209 (256)
T 3ezl_A          150 SVNGQKGQ------------F-------GQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPD-VL  209 (256)
T ss_dssp             CCCGGGSC------------S-------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHH-HH
T ss_pred             chhhccCC------------C-------CCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCHH-HH
Confidence            99888765            3       678999999999999999999999999999999999999 887654321 11


Q ss_pred             cchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+....  ......+|++.|.      ++.....+|+.+
T Consensus       210 ~~~~~~~--~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i  247 (256)
T 3ezl_A          210 EKIVATI--PVRRLGSPDEIGSIVAWLASEESGFSTGADF  247 (256)
T ss_dssp             HHHHHHS--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHhcC--CCCCCcCHHHHHHHHHHHhCCcccCCcCcEE
Confidence            1111111  2223568999887      555667788865

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.2e-35  Score=256.98  Aligned_cols=227  Identities=17%  Similarity=0.061  Sum_probs=173.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|++   |+.+++++..+++.+.  +.++.++++|++|++
T Consensus        25 ~~~~~k~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~   92 (280)
T 4da9_A           25 TQKARPVAI-VTGGR------RGIGLGI---ARALAASGFDIAITGIGDAEGVAPVIAELSGL--GARVIFLRADLADLS   92 (280)
T ss_dssp             SCCCCCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT--TCCEEEEECCTTSGG
T ss_pred             hccCCCEEE-EecCC------CHHHHHH---HHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHH
Confidence            457899999 99999      9999999   6667788887763   5788888888888776  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEccccc----CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC---CCCcEEEEEc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA---KLFARVVVVS  170 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~---~~~~~iV~vs  170 (292)
                      +++++++++.+++++||+||||||+.    .+..+.+.++|++.+++|+.|+++++++++|.|.++.   .  ++||++|
T Consensus        93 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~--g~Iv~is  170 (280)
T 4da9_A           93 SHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARAS--RSIINIT  170 (280)
T ss_dssp             GHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCC--EEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCC--CEEEEEc
Confidence            99999999999999999999999983    2456778999999999999999999999999998765   5  8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       +...|++||++++.|+++++.++.++||+||+|+||+|. ++.+..... ..
T Consensus       171 S~~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-~~  230 (280)
T 4da9_A          171 SVSAVMTS------------P-------ERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGK-YD  230 (280)
T ss_dssp             CC--------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------
T ss_pred             chhhccCC------------C-------CccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchh-HH
Confidence            99887665            2       678899999999999999999999999999999999999 887764321 11


Q ss_pred             cchhh-hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFS-WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~-~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..... ..  ......+|++.|.      ++.....+|+.+
T Consensus       231 ~~~~~~~~--p~~r~~~pedvA~~v~~L~s~~~~~itG~~i  269 (280)
T 4da9_A          231 GLIESGLV--PMRRWGEPEDIGNIVAGLAGGQFGFATGSVI  269 (280)
T ss_dssp             -------------CCBCHHHHHHHHHHHHTSTTGGGTTCEE
T ss_pred             HHHhhcCC--CcCCcCCHHHHHHHHHHHhCccccCCCCCEE
Confidence            11111 11  1223568999987      455556678765

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=100.00  E-value=2.2e-35  Score=250.61  Aligned_cols=226  Identities=16%  Similarity=0.161  Sum_probs=188.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.  +.++.++++|++|.+++
T Consensus         2 ~l~~k~vl-ITGas------~gIG~~~---a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~   69 (247)
T 3lyl_A            2 SLNEKVAL-VTGAS------RGIGFEV---AHALASKGATVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESI   69 (247)
T ss_dssp             TTTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHH
Confidence            57899999 99999      9999999   556667787776  49999999999888776  56899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.+++.+++.++|.|.+++.  ++||++||..+..+
T Consensus        70 ~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--g~iv~isS~~~~~~  147 (247)
T 3lyl_A           70 QNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRW--GRIISIGSVVGSAG  147 (247)
T ss_dssp             HHHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCTHHHHC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--eEEEEEcchhhccC
Confidence            9999999999999999999999874  3457788999999999999999999999999988777  99999999988776


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|++||++++.|++++++++.++||+||+|+||+|. ++.+..... ....+....
T Consensus       148 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~~~~~~~  207 (247)
T 3lyl_A          148 N------------P-------GQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTDE-QKSFIATKI  207 (247)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCHH-HHHHHHTTS
T ss_pred             C------------C-------CcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccHH-HHHHHhhcC
Confidence            5            3       678999999999999999999999999999999999999 887764321 000111111


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ......+|++.|.      ++.....+|+.+
T Consensus       208 --~~~~~~~~~dva~~i~~l~s~~~~~~tG~~i  238 (247)
T 3lyl_A          208 --PSGQIGEPKDIAAAVAFLASEEAKYITGQTL  238 (247)
T ss_dssp             --TTCCCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             --CCCCCcCHHHHHHHHHHHhCCCcCCccCCEE
Confidence              2223568899887      555667788866

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.9e-35  Score=253.40  Aligned_cols=210  Identities=15%  Similarity=0.100  Sum_probs=168.9

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +.||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.++++
T Consensus         2 l~~k~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~   69 (264)
T 3tfo_A            2 VMDKVIL-ITGAS------GGIGEGI---ARELGVAGAKILLGARRQARIEAIATEIRDA--GGTALAQVLDVTDRHSVA   69 (264)
T ss_dssp             CTTCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHH
T ss_pred             CCCCEEE-EeCCc------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHH
Confidence            5789999 99999      9999999   666777887776  49999999999999876  568999999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  |+||++||..+..+.
T Consensus        70 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~IV~isS~~~~~~~  147 (264)
T 3tfo_A           70 AFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRS--GQIINIGSIGALSVV  147 (264)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--eEEEEEcCHHHcccC
Confidence            999999999999999999999873  4567789999999999999999999999999988777  999999999887765


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhh
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWIS  257 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~  257 (292)
                                  +       +...|++||+++..|+++++.++ + ||+||+|+||+|+ ++.+........ .....  
T Consensus       148 ------------~-------~~~~Y~asKaal~~l~~~la~e~-~-gIrvn~v~PG~v~T~~~~~~~~~~~~-~~~~~--  203 (264)
T 3tfo_A          148 ------------P-------TAAVYCATKFAVRAISDGLRQES-T-NIRVTCVNPGVVESELAGTITHEETM-AAMDT--  203 (264)
T ss_dssp             ------------T-------TCHHHHHHHHHHHHHHHHHHHHC-S-SEEEEEEEECCC----------------------
T ss_pred             ------------C-------CChhHHHHHHHHHHHHHHHHHhC-C-CCEEEEEecCCCcCcccccccchhHH-HHHHh--
Confidence                        3       67899999999999999999998 4 9999999999999 887664322111 11111  


Q ss_pred             ccccccCCHHHhhc
Q psy4251         258 RVRPVTNFQVDLTG  271 (292)
Q Consensus       258 ~~~~~~~~~~~~a~  271 (292)
                       ......+|++.|.
T Consensus       204 -~~~~~~~pedvA~  216 (264)
T 3tfo_A          204 -YRAIALQPADIAR  216 (264)
T ss_dssp             -----CCCHHHHHH
T ss_pred             -hhccCCCHHHHHH
Confidence             1112468998887

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=100.00  E-value=1.6e-35  Score=255.67  Aligned_cols=228  Identities=16%  Similarity=0.154  Sum_probs=187.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.++
T Consensus        28 ~~l~gk~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~   95 (276)
T 3r1i_A           28 FDLSGKRAL-ITGAS------TGIGKKV---ALAYAEAGAQVAVAARHSDALQVVADEIAGV--GGKALPIRCDVTQPDQ   95 (276)
T ss_dssp             GCCTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCCCEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEcCCCCHHH
Confidence            468999999 99999      9999999   666777787776  48888899999988776  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.++. .  ++||++||..+.
T Consensus        96 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~--g~iv~isS~~~~  173 (276)
T 3r1i_A           96 VRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLG--GTIITTASMSGH  173 (276)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cEEEEECchHhc
Confidence            99999999999999999999999874  456778999999999999999999999999998764 5  899999998876


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+..+          +       +...|++||++++.|+++++.|+.++||+||+|+||+|+ ++.+.....  ...+..
T Consensus       174 ~~~~~----------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~--~~~~~~  234 (276)
T 3r1i_A          174 IINIP----------Q-------QVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLADY--HALWEP  234 (276)
T ss_dssp             SCCCS----------S-------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGGGGG--HHHHGG
T ss_pred             ccCCC----------C-------CcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccchHH--HHHHHh
Confidence            54310          1       467899999999999999999999999999999999999 887764221  111111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|+|.|.      ++.....+|+.+
T Consensus       235 ~~--p~~r~~~pedvA~~v~fL~s~~~~~itG~~i  267 (276)
T 3r1i_A          235 KI--PLGRMGRPEELTGLYLYLASAASSYMTGSDI  267 (276)
T ss_dssp             GS--TTSSCBCGGGSHHHHHHHHSGGGTTCCSCEE
T ss_pred             cC--CCCCCcCHHHHHHHHHHHcCccccCccCcEE
Confidence            11  1223568888887      566677888866

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=100.00  E-value=9.1e-36  Score=251.31  Aligned_cols=199  Identities=13%  Similarity=-0.027  Sum_probs=164.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+|+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.     .++.++++|++|.+++++
T Consensus         2 s~k~vl-VTGas------~GIG~a~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~   66 (235)
T 3l6e_A            2 SLGHII-VTGAG------SGLGRAL---TIGLVERGHQVSMMGRRYQRLQQQELLLG-----NAVIGIVADLAHHEDVDV   66 (235)
T ss_dssp             -CCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTSHHHHHH
T ss_pred             CCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHhc-----CCceEEECCCCCHHHHHH
Confidence            478888 99999      9999999   666777787776  499998888887772     268999999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|++++   ++||++||..+..+. 
T Consensus        67 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---~~iv~isS~~~~~~~-  142 (235)
T 3l6e_A           67 AFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG---GVLANVLSSAAQVGK-  142 (235)
T ss_dssp             HHHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---EEEEEECCEECCSSC-
T ss_pred             HHHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEEeCHHhcCCC-
Confidence            99999999999999999999863  456788999999999999999999999999997654   799999999887765 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISR  258 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~  258 (292)
                                 +       +...|++||+++.+|+++++.|+.+.||+||+|+||+|+ ++.+.....            
T Consensus       143 -----------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~------------  192 (235)
T 3l6e_A          143 -----------A-------NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDHV------------  192 (235)
T ss_dssp             -----------S-------SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC-------------------
T ss_pred             -----------C-------CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccCCC------------
Confidence                       3       678999999999999999999999999999999999999 887664321            


Q ss_pred             cccccCCHHHhhc
Q psy4251         259 VRPVTNFQVDLTG  271 (292)
Q Consensus       259 ~~~~~~~~~~~a~  271 (292)
                      ......+|++.|+
T Consensus       193 ~~~~~~~pedvA~  205 (235)
T 3l6e_A          193 DPSGFMTPEDAAA  205 (235)
T ss_dssp             ----CBCHHHHHH
T ss_pred             CCcCCCCHHHHHH
Confidence            1123468999887

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=100.00  E-value=3.1e-35  Score=249.67  Aligned_cols=226  Identities=17%  Similarity=0.185  Sum_probs=184.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-CHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-CWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+.  | +.++++++.+++.+.  +.++.++++|++|.++
T Consensus         1 ~l~~k~vl-VTGas------~giG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   68 (246)
T 2uvd_A            1 MLKGKVAL-VTGAS------RGIGRAI---AIDLAKQGANVVVNYAGNEQKANEVVDEIKKL--GSDAIAVRADVANAED   68 (246)
T ss_dssp             CCTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHH
Confidence            46789999 99999      9999999   6667778877763  7 888888888888765  4578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.+++.  ++||++||..+..
T Consensus        69 ~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~  146 (246)
T 2uvd_A           69 VTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRH--GRIVNIASVVGVT  146 (246)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCTHHHH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEECCHHhcC
Confidence            99999999999999999999999863  4456788999999999999999999999999987777  9999999998776


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||+++..|+++++.|+.++||+||+|+||+++ ++.+..... ....+...
T Consensus       147 ~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~  206 (246)
T 2uvd_A          147 GN------------P-------GQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDEN-IKAEMLKL  206 (246)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTT-HHHHHHHT
T ss_pred             CC------------C-------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHH-HHHHHHhc
Confidence            54            2       678999999999999999999999999999999999999 886543211 00111111


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .  ......+|++.|.      ++.....+|+.+
T Consensus       207 ~--p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~  238 (246)
T 2uvd_A          207 I--PAAQFGEAQDIANAVTFFASDQSKYITGQTL  238 (246)
T ss_dssp             C--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             C--CCCCCcCHHHHHHHHHHHcCchhcCCCCCEE
Confidence            1  1123568999887      445556678765

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=100.00  E-value=4e-35  Score=252.50  Aligned_cols=225  Identities=17%  Similarity=0.121  Sum_probs=185.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.   ++.+++++..+++.+.  +.++.++++|++|.+
T Consensus        27 ~~l~gk~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~   94 (271)
T 3v2g_A           27 ISLAGKTAF-VTGGS------RGIGAAI---AKRLALEGAAVALTYVNAAERAQAVVSEIEQA--GGRAVAIRADNRDAE   94 (271)
T ss_dssp             TCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             cCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCcEEEEECCCCCHH
Confidence            568999999 99999      9999999   6667788888763   4577888888888766  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|++  .  ++||++||..+.
T Consensus        95 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~--~--g~iv~isS~~~~  170 (271)
T 3v2g_A           95 AIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGD--G--GRIITIGSNLAE  170 (271)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT--T--CEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--C--CEEEEEeChhhc
Confidence            999999999999999999999999863  4567889999999999999999999999999864  3  899999998765


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      ....           +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++......  .......
T Consensus       171 ~~~~-----------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~--~~~~~~~  230 (271)
T 3v2g_A          171 LVPW-----------P-------GISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGD--HAEAQRE  230 (271)
T ss_dssp             CCCS-----------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCS--SHHHHHH
T ss_pred             cCCC-----------C-------CchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccch--hHHHHHh
Confidence            5421           2       678999999999999999999999999999999999999 88765321  1112222


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|.      ++.....+|+.+
T Consensus       231 ~~--~~~r~~~pedvA~~v~fL~s~~~~~itG~~i  263 (271)
T 3v2g_A          231 RI--ATGSYGEPQDIAGLVAWLAGPQGKFVTGASL  263 (271)
T ss_dssp             TC--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             cC--CCCCCCCHHHHHHHHHHHhCcccCCccCCEE
Confidence            22  2223568999887      566677888865

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=100.00  E-value=3.5e-35  Score=251.23  Aligned_cols=227  Identities=17%  Similarity=0.138  Sum_probs=183.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|+++
T Consensus         4 ~~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~   68 (259)
T 4e6p_A            4 KRLEGKSAL-ITGSA------RGIGRAF---AEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQMDVTRQDS   68 (259)
T ss_dssp             CTTTTCEEE-EETCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHH
T ss_pred             ccCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCCceEEEeeCCCHHH
Confidence            357899999 99999      9999999   666777887776  48888888887776     3478999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++ .  ++||++||..+.
T Consensus        69 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~  146 (259)
T 4e6p_A           69 IDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRG--GKIINMASQAGR  146 (259)
T ss_dssp             HHHHHHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC--eEEEEECChhhc
Confidence            99999999999999999999999864  456778999999999999999999999999998764 5  899999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc------cCC
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR------FGT  248 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~------~~~  248 (292)
                      .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+....      ...
T Consensus       147 ~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~  207 (259)
T 4e6p_A          147 RGE------------A-------LVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFARYENRP  207 (259)
T ss_dssp             SCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHHHHHHHHHHTCC
T ss_pred             cCC------------C-------CChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhhhhhhhhhccCC
Confidence            665            2       678999999999999999999999999999999999999 87665310      000


Q ss_pred             ccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 PVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .......+..  ......+|+|.|.      ++.....+|+.+
T Consensus       208 ~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i  250 (259)
T 4e6p_A          208 RGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTY  250 (259)
T ss_dssp             TTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEE
T ss_pred             hHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEE
Confidence            0011111111  1223568888887      555667778755

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=100.00  E-value=7.1e-35  Score=251.83  Aligned_cols=234  Identities=15%  Similarity=0.115  Sum_probs=184.2

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC------------HHHHHHHHHHHHhhCCCC
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC------------WDKANDAISKILTEKPSA   84 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~------------~~~~~~~~~~l~~~~~~~   84 (292)
                      +..+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+            .+++++..+++.+.  +.
T Consensus         7 ~~~~l~gk~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   74 (278)
T 3sx2_A            7 SEGPLTGKVAF-ITGAA------RGQGRAH---AVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--GS   74 (278)
T ss_dssp             --CTTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH--TC
T ss_pred             CCCCCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc--CC
Confidence            45678999999 99999      9999999   6667788888764  55            78888888888776  56


Q ss_pred             ceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCC
Q psy4251          85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLF  163 (292)
Q Consensus        85 ~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~  163 (292)
                      ++.++++|++|+++++++++++.+++++||+||||||+.....  +.++|++.+++|+.++++++++++|.|.+++ .  
T Consensus        75 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~--~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~--  150 (278)
T 3sx2_A           75 RIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTG--  150 (278)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSS--THHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSC--
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC--CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC--
Confidence            8999999999999999999999999999999999999874322  5789999999999999999999999998764 5  


Q ss_pred             cEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         164 ARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       164 ~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      ++||++||..+..+.               ....++...|++||++++.|+++++.|+.+.||+||+|+||+|. ++.+.
T Consensus       151 g~iv~isS~~~~~~~---------------~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~  215 (278)
T 3sx2_A          151 GSIVLISSSAGLAGV---------------GSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINN  215 (278)
T ss_dssp             EEEEEECCGGGTSCC---------------CCSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSS
T ss_pred             cEEEEEccHHhcCCC---------------ccCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchh
Confidence            899999999877653               11123678999999999999999999999999999999999999 88764


Q ss_pred             ccccCCccchh------hhh-hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         243 WWRFGTPVRTF------SWI-SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       243 ~~~~~~~~~~~------~~~-~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...........      ... ...+....+|++.|.      ++.....+|+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~dvA~~v~~l~s~~~~~itG~~i  269 (278)
T 3sx2_A          216 EFTREWLAKMAAATDTPGAMGNAMPVEVLAPEDVANAVAWLVSDQARYITGVTL  269 (278)
T ss_dssp             HHHHHHHHHHHHHCC--CTTSCSSSCSSBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             hhHHHHHhhccchhhhhhhhhhhcCcCcCCHHHHHHHHHHHhCcccccccCCEE
Confidence            21100000000      000 001123458999887      556667788865

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-35  Score=251.42  Aligned_cols=208  Identities=17%  Similarity=0.188  Sum_probs=172.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCC-CceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPS-AQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dls~~~~   98 (292)
                      +++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++.+..++ .++.++++|++|.++
T Consensus         4 ~~~~k~~l-VTGas------~GIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   73 (250)
T 3nyw_A            4 EKQKGLAI-ITGAS------QGIGAVI---AAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTK   73 (250)
T ss_dssp             -CCCCEEE-EESTT------SHHHHHH---HHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHH
T ss_pred             cCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHH
Confidence            57899999 99999      9999999   555666777765  59999999999999877544 689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC-CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~-~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      ++++++++.++++++|+||||||+.. ...+.+.++|++.+++|+.|++.++++++|.|++++.  ++||++||..+..+
T Consensus        74 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~~~  151 (250)
T 3nyw_A           74 ADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKN--GYIFNVASRAAKYG  151 (250)
T ss_dssp             HHHHHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECC------
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--eEEEEEccHHhcCC
Confidence            99999999999999999999999863 2236788999999999999999999999999988777  99999999988764


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|++||+++..|+++++.++.++||+||+|+||+|+ ++.+..... .        
T Consensus       152 ~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~-~--------  203 (250)
T 3nyw_A          152 F------------A-------DGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTP-F--------  203 (250)
T ss_dssp             -------------C-------CTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHTTCC-S--------
T ss_pred             C------------C-------CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchhhhcCCC-c--------
Confidence            4            2       567899999999999999999999999999999999999 887654321 0        


Q ss_pred             hccccccCCHHHhhc
Q psy4251         257 SRVRPVTNFQVDLTG  271 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~  271 (292)
                        ....+.+|++.|.
T Consensus       204 --~~~~~~~p~dva~  216 (250)
T 3nyw_A          204 --KDEEMIQPDDLLN  216 (250)
T ss_dssp             --CGGGSBCHHHHHH
T ss_pred             --ccccCCCHHHHHH
Confidence              1112458888876

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=100.00  E-value=6e-35  Score=251.42  Aligned_cols=228  Identities=14%  Similarity=0.071  Sum_probs=183.2

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--Ec-CHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QN-CWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .| +.+..++..+++.+.  +.++.++++|++|.
T Consensus        24 ~m~l~~k~vl-ITGas------~gIG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~   91 (271)
T 4iin_A           24 AMQFTGKNVL-ITGAS------KGIGAEI---AKTLASMGLKVWINYRSNAEVADALKNELEEK--GYKAAVIKFDAASE   91 (271)
T ss_dssp             CCCCSCCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCH
T ss_pred             hcccCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc--CCceEEEECCCCCH
Confidence            3678999999 99999      9999999   666777887776  36 566777777777665  56899999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.+++++++.++|.|.+++.  ++||++||..+
T Consensus        92 ~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~  169 (271)
T 4iin_A           92 SDFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRF--GSVVNVASIIG  169 (271)
T ss_dssp             HHHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC--CEEEEEechhh
Confidence            9999999999999999999999999874  3456788999999999999999999999999998877  99999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       +...|++||++++.++++++.++.+.||+||+|+||+|. ++.+..... ....+.
T Consensus       170 ~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~-~~~~~~  229 (271)
T 4iin_A          170 ERGN------------M-------GQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDE-LKADYV  229 (271)
T ss_dssp             HHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-------------CG
T ss_pred             cCCC------------C-------CchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcHH-HHHHHH
Confidence            7765            3       678999999999999999999999999999999999999 887765331 111222


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ......+|++.|.      ++.....+|+.+
T Consensus       230 ~~~--~~~~~~~p~dvA~~i~~l~s~~~~~itG~~i  263 (271)
T 4iin_A          230 KNI--PLNRLGSAKEVAEAVAFLLSDHSSYITGETL  263 (271)
T ss_dssp             GGC--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hcC--CcCCCcCHHHHHHHHHHHhCCCcCCCcCCEE
Confidence            222  2223568999887      555567788866

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=100.00  E-value=2.4e-35  Score=251.25  Aligned_cols=226  Identities=15%  Similarity=0.123  Sum_probs=164.2

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.  +.++.++++|++|++
T Consensus         4 ~~~~~~k~vl-ITGas------~giG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   71 (253)
T 3qiv_A            4 SMRFENKVGI-VTGSG------GGIGQAY---AEALAREGAAVVVADINAEAAEAVAKQIVAD--GGTAISVAVDVSDPE   71 (253)
T ss_dssp             -CTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTSHH
T ss_pred             ccccCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHH
Confidence            4678999999 99999      9999999   666777787765  49999999999999776  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC-----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG-----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~-----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +++++++++.++++++|+||||||+..     +..+.+.++|++.+++|+.++++++++++|.|.+++.  ++||++||.
T Consensus        72 ~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~  149 (253)
T 3qiv_A           72 SAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGG--GAIVNQSST  149 (253)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEECC-
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--CEEEEECCc
Confidence            999999999999999999999999842     3457788999999999999999999999999988777  999999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      .+..                      +...|++||++++.|+++++.++.+.||+||+|+||+|. ++.+..........
T Consensus       150 ~~~~----------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~  207 (253)
T 3qiv_A          150 AAWL----------------------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDD  207 (253)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-------------------
T ss_pred             cccC----------------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHHHHHH
Confidence            7652                      456799999999999999999999999999999999999 88766433212222


Q ss_pred             hhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +....  ......+|++.|.      ++.....+|+.|
T Consensus       208 ~~~~~--~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~  243 (253)
T 3qiv_A          208 IVKGL--PLSRMGTPDDLVGMCLFLLSDEASWITGQIF  243 (253)
T ss_dssp             --------------CCHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HhccC--CCCCCCCHHHHHHHHHHHcCccccCCCCCEE
Confidence            22222  2223457778776      455566788766

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=100.00  E-value=3.5e-35  Score=252.37  Aligned_cols=231  Identities=20%  Similarity=0.277  Sum_probs=183.7

Q ss_pred             CCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          18 HPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        18 ~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      .+..+++||+++ ||||+      +|||+++   +..|+++|+.|+  .|+.+++++..+++.+.. +.++.++++|++|
T Consensus        14 ~~~~~l~~k~~l-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~   82 (267)
T 1vl8_A           14 KEVFDLRGRVAL-VTGGS------RGLGFGI---AQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSN   82 (267)
T ss_dssp             ---CCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTC
T ss_pred             CCCcCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCC
Confidence            345778999999 99999      9999999   666677787776  489988888888883322 4578899999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      .++++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.|+++++++++|.|.+++.  ++||++||..
T Consensus        83 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~--g~iv~isS~~  160 (267)
T 1vl8_A           83 YEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDN--PSIINIGSLT  160 (267)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSS--CEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--cEEEEECCcc
Confidence            99999999999999999999999999864  4466788999999999999999999999999987766  8999999987


Q ss_pred             -cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         174 -HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       174 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                       +..+.            +       +...|++||++++.|+++++.++.+.||+||+|+||++. ++.+.....  + .
T Consensus       161 ~~~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~--~-~  218 (267)
T 1vl8_A          161 VEEVTM------------P-------NISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSD--P-E  218 (267)
T ss_dssp             GTCCCS------------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTC--H-H
T ss_pred             hhccCC------------C-------CChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccC--h-H
Confidence             55443            2       577999999999999999999999999999999999999 887653210  0 1


Q ss_pred             hhhhh-hc-cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWI-SR-VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~-~~-~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....+ .. ......+|++.|.      ++.....+|+.+
T Consensus       219 ~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~itG~~i  258 (267)
T 1vl8_A          219 KLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQII  258 (267)
T ss_dssp             HHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHhhCCCCCCcCHHHHHHHHHHHcCccccCCcCCeE
Confidence            11111 00 1123568888887      444556778765

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=100.00  E-value=2.3e-35  Score=254.23  Aligned_cols=228  Identities=17%  Similarity=0.176  Sum_probs=182.7

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+. .+.+.+++..+++.+.  +.++.++++|++|.++
T Consensus        26 ~~~l~gk~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~   93 (273)
T 3uf0_A           26 PFSLAGRTAV-VTGAG------SGIGRAI---AHGYARAGAHVLAWGRTDGVKEVADEIADG--GGSAEAVVADLADLEG   93 (273)
T ss_dssp             TTCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSTHHHHHHHHHHTT--TCEEEEEECCTTCHHH
T ss_pred             ccCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEcCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHH
Confidence            3678999999 99999      9999999   6667788887764 2335567777777665  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++.+.+ ++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+..
T Consensus        94 v~~~~~~~-~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~IV~isS~~~~~  170 (273)
T 3uf0_A           94 AANVAEEL-AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGS--GRIVTIASMLSFQ  170 (273)
T ss_dssp             HHHHHHHH-HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTS
T ss_pred             HHHHHHHH-HhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CEEEEEcchHhcC
Confidence            99995554 55689999999999874  4567789999999999999999999999999988777  9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cccchhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TPVRTFS  254 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~~~~~~  254 (292)
                      +.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+...... ....+..
T Consensus       171 ~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~  231 (273)
T 3uf0_A          171 GG------------R-------NVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITA  231 (273)
T ss_dssp             CC------------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHH
T ss_pred             CC------------C-------CChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHh
Confidence            65            2       678999999999999999999999999999999999999 8876542210 0011111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|.      ++.....+|+.+
T Consensus       232 ~~--p~~r~~~pedva~~v~~L~s~~a~~itG~~i  264 (273)
T 3uf0_A          232 RI--PAGRWATPEDMVGPAVFLASDAASYVHGQVL  264 (273)
T ss_dssp             HS--TTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE
T ss_pred             cC--CCCCCCCHHHHHHHHHHHhCchhcCCcCCEE
Confidence            11  2223568888887      556667788866

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=2.2e-35  Score=252.59  Aligned_cols=225  Identities=16%  Similarity=0.097  Sum_probs=176.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.   ++.+.+++..+++.+.  +.++.++++|++|.+
T Consensus         4 ~~l~~k~vl-VTGas------~GIG~ai---a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~   71 (259)
T 3edm_A            4 QRFTNRTIV-VAGAG------RDIGRAC---AIRFAQEGANVVLTYNGAAEGAATAVAEIEKL--GRSALAIKADLTNAA   71 (259)
T ss_dssp             CTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT--TSCCEEEECCTTCHH
T ss_pred             cCCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHH
Confidence            468899999 99999      9999999   6667788887763   5677788888888765  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +++++++++.++++++|+||||||..   .+..+.+.++|++.+++|+.|+++++++++|.|.+  .  ++||++||..+
T Consensus        72 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~--g~iv~isS~~~  147 (259)
T 3edm_A           72 EVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAK--G--GAIVTFSSQAG  147 (259)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--E--EEEEEECCHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C--CEEEEEcCHHh
Confidence            99999999999999999999999976   24567889999999999999999999999999975  3  89999999987


Q ss_pred             c-cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         175 R-YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       175 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      . .+.            +       +...|++||++++.|+++++.|+.+. |+||+|+||+|+ ++.+..........+
T Consensus       148 ~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~-I~vn~v~PG~v~T~~~~~~~~~~~~~~~  207 (259)
T 3edm_A          148 RDGGG------------P-------GALAYATSKGAVMTFTRGLAKEVGPK-IRVNAVCPGMISTTFHDTFTKPEVRERV  207 (259)
T ss_dssp             HHCCS------------T-------TCHHHHHHHHHHHHHHHHHHHHHTTT-CEEEEEEECCBCC---------------
T ss_pred             ccCCC------------C-------CcHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCcCcccccccChHHHHHH
Confidence            7 333            2       67899999999999999999999886 999999999999 888765322111222


Q ss_pred             hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....  ......+|++.|.      ++.....+|+.+
T Consensus       208 ~~~~--p~~r~~~pedva~~v~~L~s~~~~~itG~~i  242 (259)
T 3edm_A          208 AGAT--SLKREGSSEDVAGLVAFLASDDAAYVTGACY  242 (259)
T ss_dssp             ---------CCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HhcC--CCCCCcCHHHHHHHHHHHcCccccCccCCEE
Confidence            2222  2223568999887      566677888877

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=100.00  E-value=2e-35  Score=254.84  Aligned_cols=228  Identities=14%  Similarity=0.055  Sum_probs=186.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.  +.++.++++|++|.++
T Consensus        29 ~~l~gk~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~   96 (275)
T 4imr_A           29 FGLRGRTAL-VTGSS------RGIGAAI---AEGLAGAGAHVILHGVKPGSTAAVQQRIIAS--GGTAQELAGDLSEAGA   96 (275)
T ss_dssp             HCCTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSTTTTHHHHHHHHHT--TCCEEEEECCTTSTTH
T ss_pred             CCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEecCCCHHH
Confidence            468999999 99999      9999999   666777887776  48888888888888775  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+. +++|+||||||+..  +..+.+.++|+..+++|+.|+++++++++|.|.+++.  ++||++||..+..
T Consensus        97 ~~~~~~~~~~~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~Iv~isS~~~~~  173 (275)
T 4imr_A           97 GTDLIERAEAI-APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKW--GRVVSIGSINQLR  173 (275)
T ss_dssp             HHHHHHHHHHH-SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTS
T ss_pred             HHHHHHHHHHh-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEECCHHhCC
Confidence            99999999888 89999999999863  4567789999999999999999999999999988777  9999999998776


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||+++..|+++++.++.++||+||+|+||+|+ ++.+..... .+......
T Consensus       174 ~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-~~~~~~~~  233 (275)
T 4imr_A          174 PK------------S-------VVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQ-DPEGWDEY  233 (275)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHH-CHHHHHHH
T ss_pred             CC------------C-------CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCccccccccc-ChHHHHHH
Confidence            54            2       567899999999999999999999999999999999999 877654211 01111111


Q ss_pred             hhcc--ccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRV--RPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~--~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....  .....+|++.|.      ++.....+|+.+
T Consensus       234 ~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i  269 (275)
T 4imr_A          234 VRTLNWMGRAGRPEEMVGAALFLASEACSFMTGETI  269 (275)
T ss_dssp             HHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEE
T ss_pred             HhhcCccCCCcCHHHHHHHHHHHcCcccCCCCCCEE
Confidence            1111  123568888887      566677788865

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.6e-35  Score=256.90  Aligned_cols=221  Identities=10%  Similarity=0.004  Sum_probs=181.5

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH-------HHHHHHHHHHhhCCCCceEEEE
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD-------KANDAISKILTEKPSAQCIAME   90 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~-------~~~~~~~~l~~~~~~~~~~~~~   90 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+       .+++..+++.+.  +.++.+++
T Consensus         4 ~m~l~~k~vl-VTGas------~GIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   71 (285)
T 3sc4_A            4 SMSLRGKTMF-ISGGS------RGIGLAI---AKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA--GGQALPIV   71 (285)
T ss_dssp             --CCTTCEEE-EESCS------SHHHHHH---HHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH--TSEEEEEE
T ss_pred             CcCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc--CCcEEEEE
Confidence            3568999999 99999      9999999   6667788888764  7655       467777777766  56899999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q psy4251          91 LDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVV  168 (292)
Q Consensus        91 ~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~  168 (292)
                      ||++|.++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|++++.  ++||+
T Consensus        72 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~iv~  149 (285)
T 3sc4_A           72 GDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDN--PHILT  149 (285)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSS--CEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEE
Confidence            9999999999999999999999999999999874  4667899999999999999999999999999988777  99999


Q ss_pred             EcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCC-ccc-ccccccccc
Q psy4251         169 VSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCC-WKI-TVSKKWWRF  246 (292)
Q Consensus       169 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG-~v~-~~~~~~~~~  246 (292)
                      +||..+..+..           +       +...|++||+++.+|+++++.|+.++||+||+|+|| .+. ++.+.....
T Consensus       150 isS~~~~~~~~-----------~-------~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~~~~~~~~~  211 (285)
T 3sc4_A          150 LSPPIRLEPKW-----------L-------RPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATAAVQNLLGG  211 (285)
T ss_dssp             CCCCCCCSGGG-----------S-------CSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCHHHHHHHTS
T ss_pred             ECChhhccCCC-----------C-------CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccHHHHhhccc
Confidence            99987765531           1       568899999999999999999999999999999999 577 777654332


Q ss_pred             CCccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         247 GTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..          ......+|++.|.      ++.. ..+|+.+
T Consensus       212 ~~----------~~~r~~~pedvA~~~~~l~s~~~-~~tG~~i  243 (285)
T 3sc4_A          212 DE----------AMARSRKPEVYADAAYVVLNKPS-SYTGNTL  243 (285)
T ss_dssp             CC----------CCTTCBCTHHHHHHHHHHHTSCT-TCCSCEE
T ss_pred             cc----------cccCCCCHHHHHHHHHHHhCCcc-cccceEE
Confidence            11          1123458888887      3333 6677765

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=100.00  E-value=1.2e-34  Score=249.83  Aligned_cols=230  Identities=17%  Similarity=0.112  Sum_probs=181.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.  +.++.++++|++|+++
T Consensus        17 ~~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   84 (273)
T 1ae1_A           17 WSLKGTTAL-VTGGS------KGIGYAI---VEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTE   84 (273)
T ss_dssp             CCCTTCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EECCc------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHH
Confidence            568899999 99999      9999999   666777787776  48998888888888765  5678999999999999


Q ss_pred             HHHHHHHHHHhC-CCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKF-RSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~-~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+++ +++|+||||||+..  +..+.+.++|+..+++|+.+++.++++++|.|+++..  ++||++||..+.
T Consensus        85 ~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~--g~iv~isS~~~~  162 (273)
T 1ae1_A           85 RDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQN--GNVIFLSSIAGF  162 (273)
T ss_dssp             HHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEEcCHhhc
Confidence            999999999999 89999999999863  4567788999999999999999999999999987766  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cccchh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TPVRTF  253 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~~~~~  253 (292)
                      .+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+...... ......
T Consensus       163 ~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~  223 (273)
T 1ae1_A          163 SAL------------P-------SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEI  223 (273)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHH
T ss_pred             CCC------------C-------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHH
Confidence            654            2       678999999999999999999999999999999999999 8865432100 001111


Q ss_pred             hhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+..  ......+|++.|.      ++.....+|+.+
T Consensus       224 ~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i  261 (273)
T 1ae1_A          224 DNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQII  261 (273)
T ss_dssp             HHHHHHSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCCEE
Confidence            11101  1122568999887      455566778765

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.6e-35  Score=254.11  Aligned_cols=216  Identities=16%  Similarity=0.025  Sum_probs=170.3

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+.. +..+.++++|++|.+
T Consensus        28 ~~~l~gk~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~   96 (281)
T 4dry_A           28 KGSGEGRIAL-VTGGG------TGVGRGI---AQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-GNIVRAVVCDVGDPD   96 (281)
T ss_dssp             ------CEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHH
T ss_pred             CCCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCHH
Confidence            4678999999 99999      9999999   666777787776  499999999998887653 334589999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC--CCCcEEEEEcCc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA--KLFARVVVVSSE  172 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~--~~~~~iV~vsS~  172 (292)
                      +++++++++.+++++||+||||||+..   +..+.+.++|++.+++|+.|+++++++++|.|.++.  .  ++||++||.
T Consensus        97 ~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~--g~IV~isS~  174 (281)
T 4dry_A           97 QVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRG--GRIINNGSI  174 (281)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCC--EEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCC--cEEEEECCH
Confidence            999999999999999999999999863   456788999999999999999999999999998765  5  899999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      .+..+.            +       +...|++||++++.|+++++.|+.+.||+||+|+||+|. ++.+..... .. .
T Consensus       175 ~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-~~-~  233 (281)
T 4dry_A          175 SAQTPR------------P-------NSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMSTG-VL-Q  233 (281)
T ss_dssp             GGTCCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------CE-EE-C
T ss_pred             HhCCCC------------C-------CChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhcch-hh-h
Confidence            887765            3       678999999999999999999999999999999999999 887765321 00 1


Q ss_pred             hhhhhhccccccCCHHHhhc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~  271 (292)
                      .....  ......+|+|.|.
T Consensus       234 ~~~~~--~~~~~~~pedvA~  251 (281)
T 4dry_A          234 ANGEV--AAEPTIPIEHIAE  251 (281)
T ss_dssp             TTSCE--EECCCBCHHHHHH
T ss_pred             hhhcc--cccCCCCHHHHHH
Confidence            11111  1122458898887

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=100.00  E-value=2e-34  Score=244.63  Aligned_cols=222  Identities=17%  Similarity=0.152  Sum_probs=184.8

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccC--C
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDL--C   94 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl--s   94 (292)
                      +..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++.+.. ..+..++.+|+  +
T Consensus         8 ~~~~l~~k~vl-ITGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~d~~   76 (247)
T 3i1j_A            8 HPELLKGRVIL-VTGAA------RGIGAAA---ARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-QPQPLIIALNLENA   76 (247)
T ss_dssp             CTTTTTTCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-SCCCEEEECCTTTC
T ss_pred             CCccCCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-CCCceEEEeccccC
Confidence            34678999999 99999      9999999   555667777765  499999999999997764 24666777777  9


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      +.++++++++++.++++++|+||||||+..   +..+.+.++|++.+++|+.+++.++++++|+|++++.  ++||++||
T Consensus        77 ~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~~iv~isS  154 (247)
T 3i1j_A           77 TAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSED--ASIAFTSS  154 (247)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS--EEEEEECC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC--CeEEEEcc
Confidence            999999999999999999999999999863   4567788999999999999999999999999988777  99999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC-CCeEEEEecCCccc-cccccccccCCc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK-YKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      ..+..+.            +       +...|++||++++.|+++++.++.+ .||+||+|+||+|+ ++.+....... 
T Consensus       155 ~~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~~~~~~~~~-  214 (247)
T 3i1j_A          155 SVGRKGR------------A-------NWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRAQAYPDEN-  214 (247)
T ss_dssp             GGGTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHHHHHHSTTSC-
T ss_pred             hhhcCCC------------C-------CcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCccchhcccccC-
Confidence            9887665            2       6789999999999999999999976 79999999999999 88765432211 


Q ss_pred             cchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        .        ....+|++.|.      +++....+|+.+
T Consensus       215 --~--------~~~~~p~dva~~~~~l~s~~~~~itG~~i  244 (247)
T 3i1j_A          215 --P--------LNNPAPEDIMPVYLYLMGPDSTGINGQAL  244 (247)
T ss_dssp             --G--------GGSCCGGGGTHHHHHHHSGGGTTCCSCEE
T ss_pred             --c--------cCCCCHHHHHHHHHHHhCchhccccCeee
Confidence              0        12346888877      566777888865

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=100.00  E-value=1.4e-34  Score=247.57  Aligned_cols=227  Identities=15%  Similarity=0.095  Sum_probs=177.5

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHH-HHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDK-ANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++||+++ ||||+      +|||+++   +..|++.|+.|+.  |+.++ ++++.+++.+.. +.++.++++|++|.+++
T Consensus         2 l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v   70 (260)
T 1x1t_A            2 LKGKVAV-VTGST------SGIGLGI---ATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAV   70 (260)
T ss_dssp             CTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHH
T ss_pred             CCCCEEE-EeCCC------cHHHHHH---HHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHH
Confidence            6789999 99999      9999999   6667778887764  77766 778777776542 34788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.++++++++++|.|.+++.  ++||++||..+..+
T Consensus        71 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~  148 (260)
T 1x1t_A           71 RGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGF--GRIINIASAHGLVA  148 (260)
T ss_dssp             HHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTSC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEEEECcHHhCcC
Confidence            9999999999999999999999863  3456788999999999999999999999999987766  99999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc----------
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF----------  246 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~----------  246 (292)
                      .            +       +...|++||++++.|+++++.++.++||+||+|+||+|. ++.+.....          
T Consensus       149 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~  209 (260)
T 1x1t_A          149 S------------A-------NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQE  209 (260)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------
T ss_pred             C------------C-------CCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchH
Confidence            4            2       678999999999999999999999999999999999999 886643210          


Q ss_pred             CCccch-hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         247 GTPVRT-FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       247 ~~~~~~-~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....+ ....  ....+.+|++.|.      ++.....+|+.+
T Consensus       210 ~~~~~~~~~~~--p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~  251 (260)
T 1x1t_A          210 TAARELLSEKQ--PSLQFVTPEQLGGTAVFLASDAAAQITGTTV  251 (260)
T ss_dssp             -----CHHHHC--TTCCCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHhhccC--CCCCCcCHHHHHHHHHHHhChhhcCCCCCEE
Confidence            000111 1111  1123568999887      445556778765

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.3e-34  Score=254.74  Aligned_cols=189  Identities=19%  Similarity=0.181  Sum_probs=167.6

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC------------HHHHHHHHHHHHhhCCCCc
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC------------WDKANDAISKILTEKPSAQ   85 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~------------~~~~~~~~~~l~~~~~~~~   85 (292)
                      ..+++||+++ ||||+      +|||+++   +..|++.|+.|++  |+            .+++++..+++.+.  +.+
T Consensus        41 m~~l~gk~~l-VTGas------~GIG~ai---a~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  108 (317)
T 3oec_A           41 MNRLQGKVAF-ITGAA------RGQGRTH---AVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ--GRR  108 (317)
T ss_dssp             -CTTTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT--TCC
T ss_pred             hhccCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc--CCe
Confidence            3468999999 99999      9999999   6667788887764  44            77888888888765  568


Q ss_pred             eEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CC
Q psy4251          86 CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KL  162 (292)
Q Consensus        86 ~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~  162 (292)
                      +.++++|++|+++++++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++ . 
T Consensus       109 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~-  187 (317)
T 3oec_A          109 IIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQG-  187 (317)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSC-
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-
Confidence            999999999999999999999999999999999999874  457788999999999999999999999999998764 5 


Q ss_pred             CcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         163 FARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       163 ~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                       ++||++||..+..+.            +       +...|++||++++.|+++++.|+.+.||+||+|+||+|. ++..
T Consensus       188 -g~Iv~isS~~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~  247 (317)
T 3oec_A          188 -GSVIFVSSTVGLRGA------------P-------GQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMAL  247 (317)
T ss_dssp             -EEEEEECCGGGSSCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH
T ss_pred             -CEEEEECcHHhcCCC------------C-------CCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCcccc
Confidence             899999999887664            2       678999999999999999999999999999999999999 8764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=100.00  E-value=8.6e-35  Score=249.24  Aligned_cols=189  Identities=15%  Similarity=0.157  Sum_probs=167.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.++
T Consensus         3 ~~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   70 (262)
T 1zem_A            3 KKFNGKVCL-VTGAG------GNIGLAT---ALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEA   70 (262)
T ss_dssp             CTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHH
T ss_pred             cccCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHH
Confidence            357899999 99999      9999999   666777787765  48998888888888765  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+.   .+..+.+.++|++.+++|+.++++++++++|.|.+++.  ++||++||..+.
T Consensus        71 ~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~  148 (262)
T 1zem_A           71 VIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNY--GRIVNTASMAGV  148 (262)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEEcchhhc
Confidence            9999999999999999999999976   24567788999999999999999999999999987766  999999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .+.            +       +...|++||+++..|+++++.++.++||+||+|+||++. ++.+.
T Consensus       149 ~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~  197 (262)
T 1zem_A          149 KGP------------P-------NMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWE  197 (262)
T ss_dssp             SCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHH
T ss_pred             cCC------------C-------CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhh
Confidence            654            2       678999999999999999999999999999999999999 88654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.1e-35  Score=250.53  Aligned_cols=225  Identities=15%  Similarity=0.049  Sum_probs=166.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|.++
T Consensus         3 ~~l~~k~~l-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~   67 (257)
T 3tpc_A            3 MQLKSRVFI-VTGAS------SGLGAAV---TRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRNADVTNEAD   67 (257)
T ss_dssp             -CCTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHH
T ss_pred             cccCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEccCCCHHH
Confidence            357899999 99999      9999999   666777887776  47877777766665     3578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCC------CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc------CCCCcEE
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLG------FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARV  166 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~------~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~------~~~~~~i  166 (292)
                      ++++++++.++++++|+||||||+....      .+.+.++|++.+++|+.|+++++++++|.|.++      ..  ++|
T Consensus        68 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~--g~i  145 (257)
T 3tpc_A           68 ATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGER--GVI  145 (257)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCC--EEE
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCC--eEE
Confidence            9999999999999999999999987421      256788999999999999999999999999875      34  899


Q ss_pred             EEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc
Q psy4251         167 VVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR  245 (292)
Q Consensus       167 V~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~  245 (292)
                      |++||..+..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+....
T Consensus       146 v~isS~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~  206 (257)
T 3tpc_A          146 VNTASIAAFDGQ------------I-------GQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQ  206 (257)
T ss_dssp             EEECCTHHHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC-------
T ss_pred             EEEechhhccCC------------C-------CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCH
Confidence            999999888765            2       678999999999999999999999999999999999999 88766533


Q ss_pred             cCCccchhhhhhccccccCCHHHhhc----ccccCCCCCccc
Q psy4251         246 FGTPVRTFSWISRVRPVTNFQVDLTG----TAEKVGLSGLPD  283 (292)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~~~~G~~~  283 (292)
                      . ....+.... .......+|++.|.    .-.....+|+.+
T Consensus       207 ~-~~~~~~~~~-p~~~r~~~~~dva~~v~~l~s~~~itG~~i  246 (257)
T 3tpc_A          207 D-VQDALAASV-PFPPRLGRAEEYAALVKHICENTMLNGEVI  246 (257)
T ss_dssp             --------CCS-SSSCSCBCHHHHHHHHHHHHHCTTCCSCEE
T ss_pred             H-HHHHHHhcC-CCCCCCCCHHHHHHHHHHHcccCCcCCcEE
Confidence            1 111111111 01133568898887    112245677755

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=100.00  E-value=3.1e-34  Score=245.45  Aligned_cols=230  Identities=19%  Similarity=0.156  Sum_probs=184.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.  +.++.++++|++|+++
T Consensus         5 ~~l~~k~vl-VTGas------~giG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   72 (260)
T 2ae2_A            5 WNLEGCTAL-VTGGS------RGIGYGI---VEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSE   72 (260)
T ss_dssp             TCCTTCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHH
Confidence            458899999 99999      9999999   666777887776  48998888888888765  5688999999999999


Q ss_pred             HHHHHHHHHHhC-CCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKF-RSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~-~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+++ +++|+||||||+..  +..+.+.++|+..+++|+.++++++++++|.|.+++.  ++||++||..+.
T Consensus        73 ~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~  150 (260)
T 2ae2_A           73 RQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASER--GNVVFISSVSGA  150 (260)
T ss_dssp             HHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSS--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEEcchhhc
Confidence            999999999999 89999999999863  3456788999999999999999999999999988777  999999998876


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||++++.++++++.++.++||+||+|+||++. ++.+.............
T Consensus       151 ~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~  211 (260)
T 2ae2_A          151 LAV------------P-------YEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLN  211 (260)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHH
T ss_pred             cCC------------C-------CcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHH
Confidence            654            2       678999999999999999999999899999999999999 87654321100001000


Q ss_pred             hh-hc-cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WI-SR-VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~-~~-~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+ .. ......+|++.|.      ++.....+|+.+
T Consensus       212 ~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~  248 (260)
T 2ae2_A          212 KLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQII  248 (260)
T ss_dssp             HHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHhcCCCCCCCCHHHHHHHHHHHcCccccCCCCCEE
Confidence            11 00 1122568999887      445556778765

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=100.00  E-value=2e-34  Score=246.91  Aligned_cols=208  Identities=16%  Similarity=0.102  Sum_probs=171.8

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+.  +.++.++++|++|.+
T Consensus        24 m~~l~~k~vl-ITGas------~gIG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   91 (262)
T 3rkr_A           24 MSSLSGQVAV-VTGAS------RGIGAAI---ARKLGSLGARVVLTARDVEKLRAVEREIVAA--GGEAESHACDLSHSD   91 (262)
T ss_dssp             -CTTTTCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHH
T ss_pred             hhccCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--CCceeEEEecCCCHH
Confidence            4568899999 99999      9999999   556667777765  49999999999998776  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +++++++++.++++++|+||||||+.   .+..+.+.++|+..+++|+.|++.++++++|.|.+++.  ++||++||..+
T Consensus        92 ~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~  169 (262)
T 3rkr_A           92 AIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKR--GHIINISSLAG  169 (262)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--CEEEEECSSCS
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--ceEEEEechhh
Confidence            99999999999999999999999984   24567788999999999999999999999999988777  99999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       +...|++||++++.|+++++.++.+.||+||+|+||+|+ ++.......    .  
T Consensus       170 ~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~----~--  224 (262)
T 3rkr_A          170 KNPV------------A-------DGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLSAK----K--  224 (262)
T ss_dssp             SCCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------
T ss_pred             cCCC------------C-------CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccccccc----c--
Confidence            7654            2       678999999999999999999999999999999999999 887664321    0  


Q ss_pred             hhhhccccccCCHHHhhc
Q psy4251         254 SWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~  271 (292)
                           ......+|++.|.
T Consensus       225 -----~~~~~~~p~dvA~  237 (262)
T 3rkr_A          225 -----SALGAIEPDDIAD  237 (262)
T ss_dssp             ---------CCCHHHHHH
T ss_pred             -----ccccCCCHHHHHH
Confidence                 1112358888887

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=100.00  E-value=2e-34  Score=249.96  Aligned_cols=247  Identities=13%  Similarity=0.076  Sum_probs=188.8

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC------------HHHHHHHHHHHHhhCCCC
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC------------WDKANDAISKILTEKPSA   84 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~------------~~~~~~~~~~l~~~~~~~   84 (292)
                      +..+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+            .+.+++...++...  +.
T Consensus         4 ~m~~l~gk~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   71 (287)
T 3pxx_A            4 SMGRVQDKVVL-VTGGA------RGQGRSH---AVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--GR   71 (287)
T ss_dssp             SCCTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT--TS
T ss_pred             cccccCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc--CC
Confidence            44678999999 99999      9999999   6667788887764  65            77888888887765  67


Q ss_pred             ceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCc
Q psy4251          85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA  164 (292)
Q Consensus        85 ~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~  164 (292)
                      ++.++++|++|.++++++++++.++++++|+||||||+.....+.+.++|+..+++|+.|+++++++++|+|.  ..  +
T Consensus        72 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~--g  147 (287)
T 3pxx_A           72 KAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLT--SG--A  147 (287)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCC--TT--C
T ss_pred             ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhh--cC--c
Confidence            8999999999999999999999999999999999999975445578899999999999999999999999983  34  8


Q ss_pred             EEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         165 RVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       165 ~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      +||++||..+..+.....        ......+++...|++||++++.|++++++++.++||+||+|+||+|. ++.+..
T Consensus       148 ~iv~isS~~~~~~~~~~~--------~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~  219 (287)
T 3pxx_A          148 SIITTGSVAGLIAAAQPP--------GAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSA  219 (287)
T ss_dssp             EEEEECCHHHHHHHHCCC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSH
T ss_pred             EEEEeccchhcccccccc--------cccccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc
Confidence            999999998776531100        00111223678999999999999999999999999999999999999 887642


Q ss_pred             ccc-----C-Cccch---hh---hhhccccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         244 WRF-----G-TPVRT---FS---WISRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       244 ~~~-----~-~~~~~---~~---~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      ...     . .....   ..   .....+.-..+|+|.|.      ++.....+|+.+ .|.-|+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~~  284 (287)
T 3pxx_A          220 PMYRQFRPDLEAPSRADALLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAM  284 (287)
T ss_dssp             HHHHHHCTTSSSCCHHHHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred             chhhhhccccccchhHHHHhhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECchhh
Confidence            110     0 00000   00   11112233568888887      566677888865 354444

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=100.00  E-value=1e-34  Score=250.01  Aligned_cols=211  Identities=16%  Similarity=0.055  Sum_probs=165.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++.+|+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|+++
T Consensus        24 ~~~~~k~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~   88 (272)
T 4dyv_A           24 SKTGKKIAI-VTGAG------SGVGRAV---AVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCVPTDVTDPDS   88 (272)
T ss_dssp             ----CCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----TSCCEEEECCTTSHHH
T ss_pred             cCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEecCCCHHH
Confidence            357899999 99999      9999999   666777787776  48998888888776     3578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC--CCCcEEEEEcCcc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA--KLFARVVVVSSES  173 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~--~~~~~iV~vsS~~  173 (292)
                      ++++++++.++++++|+||||||+..   +..+.+.++|++.+++|+.|+++++++++|.|.++.  .  ++||++||..
T Consensus        89 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~--g~IV~isS~~  166 (272)
T 4dyv_A           89 VRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRG--GRIINNGSIS  166 (272)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCC--EEEEEECCSS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCC--cEEEEECchh
Confidence            99999999999999999999999863   456778999999999999999999999999998765  5  8999999998


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      +..+.            +       +...|++||++++.|+++++.|+.+.||+||+|+||+|+ ++.+..... .....
T Consensus       167 ~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-~~~~~  226 (272)
T 4dyv_A          167 ATSPR------------P-------YSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAG-VPQAD  226 (272)
T ss_dssp             TTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC----------------
T ss_pred             hcCCC------------C-------CchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhccc-chhhh
Confidence            87665            2       678999999999999999999999999999999999999 888765321 11111


Q ss_pred             hhhhhccccccCCHHHhhc
Q psy4251         253 FSWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~  271 (292)
                       ...  ......+|++.|.
T Consensus       227 -~~~--~~~~~~~pedvA~  242 (272)
T 4dyv_A          227 -LSI--KVEPVMDVAHVAS  242 (272)
T ss_dssp             ------------CHHHHHH
T ss_pred             -hcc--cccCCCCHHHHHH
Confidence             111  1112468888887

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=2.1e-34  Score=246.60  Aligned_cols=226  Identities=17%  Similarity=0.116  Sum_probs=174.4

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|.+
T Consensus         4 ~m~l~~k~vl-ITGas------~gIG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~   68 (261)
T 3n74_A            4 SMSLEGKVAL-ITGAG------SGFGEGM---AKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAVAADISKEA   68 (261)
T ss_dssp             -CTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTSHH
T ss_pred             cccCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEecCCCHH
Confidence            3678999999 99999      9999999   566667787766  49998888887766     457899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC----CCCcEEEEEc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA----KLFARVVVVS  170 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~----~~~~~iV~vs  170 (292)
                      +++++++++.++++++|+||||||+..   +..+.+.++|++.+++|+.++++++++++|.|.++.    .  ++||++|
T Consensus        69 ~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~--~~iv~is  146 (261)
T 3n74_A           69 DVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQE--CVILNVA  146 (261)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCC--EEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCC--eEEEEeC
Confidence            999999999999999999999999864   335568899999999999999999999999998653    4  7899999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc---
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF---  246 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~---  246 (292)
                      |..+..+.            +       ....|++||++++.|+++++.|+.++||+||+|+||+++ ++.+.....   
T Consensus       147 S~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~  207 (261)
T 3n74_A          147 STGAGRPR------------P-------NLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSE  207 (261)
T ss_dssp             CTTTTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------
T ss_pred             chhhcCCC------------C-------CccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcH
Confidence            99877654            2       677899999999999999999999999999999999999 887654211   


Q ss_pred             CCccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         247 GTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....+....  ......+|++.|.      ++.....+|+.+
T Consensus       208 ~~~~~~~~~~--~~~~~~~~~dva~~~~~l~s~~~~~itG~~i  248 (261)
T 3n74_A          208 EIRKKFRDSI--PMGRLLKPDDLAEAAAFLCSPQASMITGVAL  248 (261)
T ss_dssp             ---------C--TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             HHHHHHhhcC--CcCCCcCHHHHHHHHHHHcCCcccCcCCcEE
Confidence            0111111111  2223568999887      556667788866

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=100.00  E-value=4.9e-35  Score=254.49  Aligned_cols=226  Identities=17%  Similarity=0.104  Sum_probs=179.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH-HHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD-KANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+ ..+...+.+.+.  +.++.++++|++|.+
T Consensus        43 ~~l~gk~vl-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~  110 (291)
T 3ijr_A           43 EKLKGKNVL-ITGGD------SGIGRAV---SIAFAKEGANIAIAYLDEEGDANETKQYVEKE--GVKCVLLPGDLSDEQ  110 (291)
T ss_dssp             STTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT--TCCEEEEESCTTSHH
T ss_pred             cCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--CCcEEEEECCCCCHH
Confidence            568999999 99999      9999999   6667788877763  6654 444445555443  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +++++++++.++++++|+||||||+..   +..+.+.++|++.+++|+.|+++++++++|+|++  .  ++||++||..+
T Consensus       111 ~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~--g~iv~isS~~~  186 (291)
T 3ijr_A          111 HCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ--G--DVIINTASIVA  186 (291)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT--T--CEEEEECCTHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh--C--CEEEEEechHh
Confidence            999999999999999999999999863   3456788999999999999999999999999864  3  89999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++............+.
T Consensus       187 ~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~  247 (291)
T 3ijr_A          187 YEGN------------E-------TLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFG  247 (291)
T ss_dssp             HHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHHHHHHTT
T ss_pred             cCCC------------C-------CChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHHHHHHHH
Confidence            8765            2       678999999999999999999999999999999999999 8865432110001111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ......+|+|.|.      ++.....+|+.+
T Consensus       248 ~~~--p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i  281 (291)
T 3ijr_A          248 SNV--PMQRPGQPYELAPAYVYLASSDSSYVTGQMI  281 (291)
T ss_dssp             TTS--TTSSCBCGGGTHHHHHHHHSGGGTTCCSCEE
T ss_pred             ccC--CCCCCcCHHHHHHHHHHHhCCccCCCcCCEE
Confidence            111  1223457888887      556667788865

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=100.00  E-value=6.2e-35  Score=249.16  Aligned_cols=224  Identities=16%  Similarity=0.122  Sum_probs=181.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++     +.++.++++|++|.++
T Consensus         4 ~~l~gk~~l-VTGas------~gIG~a~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~   68 (255)
T 4eso_A            4 GNYQGKKAI-VIGGT------HGMGLAT---VRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNE   68 (255)
T ss_dssp             CTTTTCEEE-EETCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHH
Confidence            357899999 99999      9999999   666777887776  48988888877766     3578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|++  .  ++||++||.++..
T Consensus        69 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~--g~iv~isS~~~~~  144 (255)
T 4eso_A           69 IAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIRE--G--GSIVFTSSVADEG  144 (255)
T ss_dssp             HHHHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--E--EEEEEECCGGGSS
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc--C--CEEEEECChhhcC
Confidence            99999999999999999999999873  4567799999999999999999999999998865  3  8999999998877


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cccchhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TPVRTFS  254 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~~~~~~  254 (292)
                      +.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+...... ....+..
T Consensus       145 ~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~  205 (255)
T 4eso_A          145 GH------------P-------GMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKT  205 (255)
T ss_dssp             BC------------T-------TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHH
T ss_pred             CC------------C-------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHH
Confidence            65            3       678999999999999999999999999999999999999 8765421100 0001111


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....  ......+|+|.|.      ++ ....+|+.+
T Consensus       206 ~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~itG~~i  241 (255)
T 4eso_A          206 LGDNITPMKRNGTADEVARAVLFLAFE-ATFTTGAKL  241 (255)
T ss_dssp             HHHHHSTTSSCBCHHHHHHHHHHHHHT-CTTCCSCEE
T ss_pred             HHhccCCCCCCcCHHHHHHHHHHHcCc-CcCccCCEE
Confidence            1111  1223568999987      33 567788865

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=100.00  E-value=3.6e-34  Score=245.06  Aligned_cols=228  Identities=13%  Similarity=0.080  Sum_probs=181.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+..++.++.++++|++|++++
T Consensus         4 ~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   73 (260)
T 2z1n_A            4 GIQGKLAV-VTAGS------SGLGFAS---ALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDI   73 (260)
T ss_dssp             CCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHH
Confidence            57899999 99999      9999999   555667787776  489988888888887543334789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++ +|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.+++.  ++||++||..+..+
T Consensus        74 ~~~~~~~~~~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~  150 (260)
T 2z1n_A           74 DRLFEKARDLGG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGW--GRMVYIGSVTLLRP  150 (260)
T ss_dssp             HHHHHHHHHTTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTSC
T ss_pred             HHHHHHHHHhcC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEECchhhcCC
Confidence            999999999999 999999999863  3456788999999999999999999999999988777  99999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc----------cccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK----------WWRF  246 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~----------~~~~  246 (292)
                      .            +       +...|++||+++..++++++.++.++||+||+|+||+|. ++.+.          ....
T Consensus       151 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~  211 (260)
T 2z1n_A          151 W------------Q-------DLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVE  211 (260)
T ss_dssp             C------------T-------TBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC---------------
T ss_pred             C------------C-------CCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHH
Confidence            4            2       678999999999999999999999999999999999999 88762          1110


Q ss_pred             CCccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         247 GTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....+....  ......+|++.|.      ++.....+|+.+
T Consensus       212 ~~~~~~~~~~--p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i  252 (260)
T 2z1n_A          212 EALKSMASRI--PMGRVGKPEELASVVAFLASEKASFITGAVI  252 (260)
T ss_dssp             --------CC--TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             HHHHHHHhcC--CCCCccCHHHHHHHHHHHhCccccCCCCCEE
Confidence            0001111111  1122458999887      444566788765

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=100.00  E-value=2.9e-34  Score=246.67  Aligned_cols=233  Identities=18%  Similarity=0.205  Sum_probs=186.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+..++..+..+++|+++.++
T Consensus         6 ~~l~~k~~l-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~   75 (267)
T 3t4x_A            6 MQLKGKTAL-VTGST------AGIGKAI---ATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQG   75 (267)
T ss_dssp             CCCTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHH
T ss_pred             cccCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHH
Confidence            468899999 99999      9999999   666777887776  49999999999999888777789999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++    +++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+..
T Consensus        76 ~~~~~~----~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~  149 (267)
T 3t4x_A           76 CQDVIE----KYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKE--GRVIFIASEAAIM  149 (267)
T ss_dssp             HHHHHH----HCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTE--EEEEEECCGGGTS
T ss_pred             HHHHHH----hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--CEEEEEcchhhcc
Confidence            877754    4689999999999874  4567788999999999999999999999999988777  9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc------
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP------  249 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~------  249 (292)
                      +.            +       +...|++||++++.|+++++.++.++||+||+|+||++. ++.+.......+      
T Consensus       150 ~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~  210 (267)
T 3t4x_A          150 PS------------Q-------EMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTI  210 (267)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCH
T ss_pred             CC------------C-------cchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCH
Confidence            65            2       678999999999999999999999999999999999999 876543211000      


Q ss_pred             cchhh-hhhc-----cccccCCHHHhhc------ccccCCCCCcccc-CCcc
Q psy4251         250 VRTFS-WISR-----VRPVTNFQVDLTG------TAEKVGLSGLPDS-EWMW  288 (292)
Q Consensus       250 ~~~~~-~~~~-----~~~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w  288 (292)
                      ..... .+..     ...-..+|+|.|.      ++.....+|+.+. |.-|
T Consensus       211 ~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~  262 (267)
T 3t4x_A          211 EEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGGL  262 (267)
T ss_dssp             HHHHHHHHHHHCTTCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred             HHHHHHHhhccCCcccccCccCHHHHHHHHHHHcCccccCccCCeEEECCCc
Confidence            00100 1100     1123568888887      5666778888663 4444

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=100.00  E-value=2.7e-34  Score=245.07  Aligned_cols=223  Identities=14%  Similarity=0.089  Sum_probs=179.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|.+++
T Consensus         2 ~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~   66 (254)
T 1hdc_A            2 DLSGKTVI-ITGGA------RGLGAEA---ARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDW   66 (254)
T ss_dssp             CCCCSEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHH
Confidence            47899999 99999      9999999   666777887776  48888777766554     34788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.++++++++++|.|++++.  ++||++||..+..+
T Consensus        67 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~  144 (254)
T 1hdc_A           67 QRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGG--GSIVNISSAAGLMG  144 (254)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CEEEEECchhhccC
Confidence            9999999999999999999999863  3456788999999999999999999999999988766  99999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|++||++++.|+++++.++.+.||+||+|+||++. ++.+..... ....+....
T Consensus       145 ~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~  204 (254)
T 1hdc_A          145 L------------A-------LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIR-QGEGNYPNT  204 (254)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTCC-CSTTSCTTS
T ss_pred             C------------C-------CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccccccchh-HHHHHHhcC
Confidence            4            2       678999999999999999999999889999999999999 876653211 111111111


Q ss_pred             hccccccC-CHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTN-FQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~-~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ...... +|++.|.      ++.....+|+.+
T Consensus       205 --p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~  236 (254)
T 1hdc_A          205 --PMGRVGNEPGEIAGAVVKLLSDTSSYVTGAEL  236 (254)
T ss_dssp             --TTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             --CCCCCCCCHHHHHHHHHHHhCchhcCCCCCEE
Confidence              111234 8999887      444556778766

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=100.00  E-value=2.9e-34  Score=249.83  Aligned_cols=224  Identities=11%  Similarity=0.028  Sum_probs=175.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCccc--chhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTG--LKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~G--iG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      .+++||+++ ||||+      +|  ||+++   +..|++.|+.|+.  |+.+ ..+..+++.+..  .++.+++||++|.
T Consensus        27 ~~l~gk~~l-VTGas------g~~GIG~ai---a~~la~~G~~V~~~~r~~~-~~~~~~~~~~~~--~~~~~~~~Dv~d~   93 (293)
T 3grk_A           27 GLLQGKRGL-ILGVA------NNRSIAWGI---AKAAREAGAELAFTYQGDA-LKKRVEPLAEEL--GAFVAGHCDVADA   93 (293)
T ss_dssp             CTTTTCEEE-EECCC------SSSSHHHHH---HHHHHHTTCEEEEEECSHH-HHHHHHHHHHHH--TCEEEEECCTTCH
T ss_pred             ccCCCCEEE-EEcCC------CCCcHHHHH---HHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhc--CCceEEECCCCCH
Confidence            468999999 99998      76  99999   6667778877764  6743 344445554442  3688999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      ++++++++++.+++++||+||||||+..      +..+.+.++|+..+++|+.++++++++++|.|.+  .  ++||++|
T Consensus        94 ~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~--g~Iv~is  169 (293)
T 3grk_A           94 ASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD--G--GSILTLT  169 (293)
T ss_dssp             HHHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT--C--EEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC--C--CEEEEEe
Confidence            9999999999999999999999999863      4567789999999999999999999999999975  4  9999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       +...|++||+++..|+++++.|+.++||+||+|+||+|+ ++.+.....   
T Consensus       170 S~~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~---  227 (293)
T 3grk_A          170 YYGAEKVM------------P-------NYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDF---  227 (293)
T ss_dssp             CGGGTSBC------------T-------TTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCH---
T ss_pred             ehhhccCC------------C-------chHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccch---
Confidence            99887664            2       678999999999999999999999999999999999999 887654221   


Q ss_pred             cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....+...  ......+|++.|.      ++.....+|+.+
T Consensus       228 ~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i  269 (293)
T 3grk_A          228 RYILKWNEYNAPLRRTVTIDEVGDVGLYFLSDLSRSVTGEVH  269 (293)
T ss_dssp             HHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCCcceEE
Confidence            111111111  2223568999887      555667788876

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=100.00  E-value=3e-34  Score=249.56  Aligned_cols=223  Identities=12%  Similarity=0.082  Sum_probs=180.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--E-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH-
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--Q-NCWDKANDAISKILTEKPSAQCIAMELDLCRLK-   97 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~-   97 (292)
                      +++||+++ ||||+      +|||+++   +..|+++|+.|+  . |+.++++++.+++.+.. +.++.++++|++|.+ 
T Consensus         6 ~l~~k~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~   74 (291)
T 1e7w_A            6 APTVPVAL-VTGAA------KRLGRSI---AEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVAT   74 (291)
T ss_dssp             --CCCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCB
T ss_pred             CCCCCEEE-EECCC------chHHHHH---HHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhc-CCeeEEEEeecCCccc
Confidence            57899999 99999      9999999   556667787765  5 89999999888886333 468999999999999 


Q ss_pred             ----------------HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCC--------------CcchhhhhhhhhhHH
Q psy4251          98 ----------------SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHT--------------EDGFETTFQVNHLAH  145 (292)
Q Consensus        98 ----------------~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~--------------~~~~~~~~~vN~~~~  145 (292)
                                      +++++++++.++++++|+||||||+..  +..+.+              .++|+..+++|+.++
T Consensus        75 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~  154 (291)
T 1e7w_A           75 APVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAP  154 (291)
T ss_dssp             CCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHH
T ss_pred             ccccccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHH
Confidence                            999999999999999999999999863  445667              889999999999999


Q ss_pred             HHHHHHHHHHHHhcC------CCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHh
Q psy4251         146 FYLTLQLENALIKGA------KLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLAT  219 (292)
Q Consensus       146 ~~l~~~ll~~l~~~~------~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~  219 (292)
                      ++++++++|.|.+++      .  ++||++||..+..+.            +       +...|++||+++..|+++++.
T Consensus       155 ~~l~~~~~~~m~~~~~~~~~~~--g~Iv~isS~~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~  213 (291)
T 1e7w_A          155 YFLIKAFAHRVAGTPAKHRGTN--YSIINMVDAMTNQPL------------L-------GYTIYTMAKGALEGLTRSAAL  213 (291)
T ss_dssp             HHHHHHHHHHHHTSCGGGSCSC--EEEEEECCTTTTSCC------------T-------TCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCCC--cEEEEEechhhcCCC------------C-------CCchhHHHHHHHHHHHHHHHH
Confidence            999999999998765      5  899999999877654            2       678999999999999999999


Q ss_pred             HhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhc-c-cc-ccCCHHHhhc------ccccCCCCCccc
Q psy4251         220 LWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISR-V-RP-VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       220 ~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      |+.++||+||+|+||+|+ ++ + ...     .....+.. . .. ...+|++.|.      ++.....+|+.+
T Consensus       214 e~~~~gI~vn~v~PG~v~T~~-~-~~~-----~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i  280 (291)
T 1e7w_A          214 ELAPLQIRVNGVGPGLSVLVD-D-MPP-----AVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCV  280 (291)
T ss_dssp             HHGGGTEEEEEEEESSBCCGG-G-SCH-----HHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHhcCeEEEEEeeCCccCCc-c-CCH-----HHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCCcccCccCcEE
Confidence            999999999999999999 88 4 211     11111111 1 11 3568999987      555667788866

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=100.00  E-value=4.2e-34  Score=243.18  Aligned_cols=222  Identities=18%  Similarity=0.185  Sum_probs=172.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH-HHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW-DKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +++||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+. +++++   ++.+.  +.++.++++|++|.++
T Consensus         4 ~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~Dv~~~~~   68 (249)
T 2ew8_A            4 RLKDKLAV-ITGGA------NGIGRAI---AERFAVEGADIAIADLVPAPEAEA---AIRNL--GRRVLTVKCDVSQPGD   68 (249)
T ss_dssp             TTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCCHHHHH---HHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEcCCchhHHHH---HHHhc--CCcEEEEEeecCCHHH
Confidence            57899999 99999      9999999   6667778877764  776 66554   34333  4578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|++++.  ++||++||..+..
T Consensus        69 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~  146 (249)
T 2ew8_A           69 VEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGW--GRIINLTSTTYWL  146 (249)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGGS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--eEEEEEcchhhcc
Confidence            99999999999999999999999863  4466788999999999999999999999999988766  9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc-ccccc--CCccch
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK-KWWRF--GTPVRT  252 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~-~~~~~--~~~~~~  252 (292)
                      +.            +       +...|++||++++.|+++++.|+.+.||+||+|+||+|. ++.+ .....  .....+
T Consensus       147 ~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~  207 (249)
T 2ew8_A          147 KI------------E-------AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNM  207 (249)
T ss_dssp             CC------------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC------------------CT
T ss_pred             CC------------C-------CchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccchhhHHHHh
Confidence            54            2       678999999999999999999999999999999999999 8866 32100  011111


Q ss_pred             hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .  .  ......+|++.|.      ++.....+|+.+
T Consensus       208 ~--~--~~~~~~~p~dva~~~~~l~s~~~~~~tG~~~  240 (249)
T 2ew8_A          208 L--Q--AIPRLQVPLDLTGAAAFLASDDASFITGQTL  240 (249)
T ss_dssp             T--S--SSCSCCCTHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             h--C--ccCCCCCHHHHHHHHHHHcCcccCCCCCcEE
Confidence            1  1  1123568898887      445556788765

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=100.00  E-value=1.6e-34  Score=251.66  Aligned_cols=226  Identities=16%  Similarity=0.074  Sum_probs=181.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC--HHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC--WDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+  .+..+++.+.+.+.  +.++.++++|++|.
T Consensus        45 ~~l~~k~vl-VTGas------~GIG~ai---a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~  112 (294)
T 3r3s_A           45 GRLKDRKAL-VTGGD------SGIGRAA---AIAYAREGADVAINYLPAEEEDAQQVKALIEEC--GRKAVLLPGDLSDE  112 (294)
T ss_dssp             STTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT--TCCEEECCCCTTSH
T ss_pred             cCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc--CCcEEEEEecCCCH
Confidence            468899999 99999      9999999   6667788888765  43  45566666666554  56899999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      ++++++++++.++++++|+||||||+..   +..+.+.++|++.+++|+.|+++++++++|.|.+  .  ++||++||..
T Consensus       113 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~--g~Iv~isS~~  188 (294)
T 3r3s_A          113 SFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPK--G--ASIITTSSIQ  188 (294)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCT--T--CEEEEECCGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc--C--CEEEEECChh
Confidence            9999999999999999999999999853   4567789999999999999999999999999864  3  8999999998


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc-cCCccc
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR-FGTPVR  251 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~-~~~~~~  251 (292)
                      +..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++...... ......
T Consensus       189 ~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~  249 (294)
T 3r3s_A          189 AYQPS------------P-------HLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQ  249 (294)
T ss_dssp             GTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTT
T ss_pred             hccCC------------C-------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHHH
Confidence            87764            2       678999999999999999999999999999999999999 87433211 101111


Q ss_pred             hhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +....  ......+|+|.|.      ++.....+|+.+
T Consensus       250 ~~~~~--p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i  285 (294)
T 3r3s_A          250 FGQQT--PMKRAGQPAELAPVYVYLASQESSYVTAEVH  285 (294)
T ss_dssp             TTTTS--TTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHhcC--CCCCCcCHHHHHHHHHHHhCccccCCCCCEE
Confidence            11111  2223568888887      566677788865

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=100.00  E-value=6.1e-34  Score=241.90  Aligned_cols=188  Identities=19%  Similarity=0.176  Sum_probs=166.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.+++
T Consensus         4 ~l~~k~~l-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~~   71 (247)
T 2jah_A            4 ALQGKVAL-ITGAS------SGIGEAT---ARALAAEGAAVAIAARRVEKLRALGDELTAA--GAKVHVLELDVADRQGV   71 (247)
T ss_dssp             TTTTCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHH
T ss_pred             cCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHH
Confidence            57899999 99999      9999999   666777787776  48999999888888765  56889999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.++.   ++||++||..+..+
T Consensus        72 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~~  148 (247)
T 2jah_A           72 DAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK---GTVVQMSSIAGRVN  148 (247)
T ss_dssp             HHHHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGTCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC---CEEEEEccHHhcCC
Confidence            9999999999999999999999863  456778899999999999999999999999997654   89999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .            +       +...|++||+++..|+++++.|+.++||+||+|+||+++ ++....
T Consensus       149 ~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~  196 (247)
T 2jah_A          149 V------------R-------NAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHI  196 (247)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGC
T ss_pred             C------------C-------CCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcc
Confidence            4            2       678999999999999999999999999999999999999 886543

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=100.00  E-value=4.2e-34  Score=244.09  Aligned_cols=226  Identities=15%  Similarity=0.097  Sum_probs=181.3

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.++++++
T Consensus         2 ~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~   69 (256)
T 1geg_A            2 KKVAL-VTGAG------QGIGKAI---ALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAA   69 (256)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHH
T ss_pred             CCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHH
Confidence            67888 99999      9999999   566677787776  48998888888888765  45789999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccccC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.+++ .  ++||++||..+..+. 
T Consensus        70 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-  146 (256)
T 1geg_A           70 VEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHG--GKIINACSQAGHVGN-  146 (256)
T ss_dssp             HHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC--EEEEEECCGGGTSCC-
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC--CEEEEECchhhcCCC-
Confidence            9999999999999999999863  456678899999999999999999999999998765 6  899999999877654 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc---c--C-Cccch
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR---F--G-TPVRT  252 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~---~--~-~~~~~  252 (292)
                                 +       +...|++||++++.|+++++.|+.+.||+||+|+||+|. ++.+....   .  + .....
T Consensus       147 -----------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~  208 (256)
T 1geg_A          147 -----------P-------ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYG  208 (256)
T ss_dssp             -----------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHH
T ss_pred             -----------C-------CchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHH
Confidence                       2       678999999999999999999999999999999999999 87654310   0  0 00011


Q ss_pred             hhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...+..  ......+|++.|.      ++.....+|+.+
T Consensus       209 ~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i  247 (256)
T 1geg_A          209 TAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSL  247 (256)
T ss_dssp             HHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEE
Confidence            111111  1123568999887      445556778765

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=100.00  E-value=7.9e-34  Score=248.53  Aligned_cols=210  Identities=21%  Similarity=0.226  Sum_probs=163.6

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      +...+++|+++ ||||+      +|||+++   +.+|+++|+.|+  +|+.+++++..+++.+.. +.++.++++|++|.
T Consensus         6 ~~~~~~~k~vl-ITGas------~GIG~~~---a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~   74 (311)
T 3o26_A            6 PNTVTKRRCAV-VTGGN------KGIGFEI---CKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDP   74 (311)
T ss_dssp             ------CCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSC
T ss_pred             CCccCCCcEEE-EecCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCc
Confidence            34567899999 99999      9999999   555667787776  499999999999997764 45899999999998


Q ss_pred             -HHHHHHHHHHHHhCCCccEEEEcccccC--------------------------------CCCCCCCcchhhhhhhhhh
Q psy4251          97 -KSVKKFAEEYQKKFRSLNILVLNAGVFG--------------------------------LGFSHTEDGFETTFQVNHL  143 (292)
Q Consensus        97 -~~v~~~~~~~~~~~~~id~lI~nAg~~~--------------------------------~~~~~~~~~~~~~~~vN~~  143 (292)
                       ++++++++.+.+++++||+||||||+..                                +..+.+.+++++++++|+.
T Consensus        75 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~  154 (311)
T 3o26_A           75 IATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYN  154 (311)
T ss_dssp             HHHHHHHHHHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeee
Confidence             9999999999999999999999999863                                2234577889999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC-----CccccC------------------cCCCCCC-hh
Q psy4251         144 AHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI-----SKSVLS------------------VENYSDF-WA  199 (292)
Q Consensus       144 ~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~-----~~~~~~------------------~~~~~~~-~~  199 (292)
                      |+++++++++|.|.+++.  ++||++||..+..+.......     +.+.+.                  ......+ .+
T Consensus       155 g~~~l~~~~~~~l~~~~~--~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (311)
T 3o26_A          155 GVKSVTEVLIPLLQLSDS--PRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSF  232 (311)
T ss_dssp             HHHHHHHHHHHHHTTSSS--CEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSS
T ss_pred             hHHHHHHHhhHhhccCCC--CeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCccc
Confidence            999999999999988777  999999999877653110000     000000                  0001111 24


Q ss_pred             hhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         200 MTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       200 ~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      ...|++||+++++|++++++++++  |+||+|+||+|. +|.+..
T Consensus       233 ~~~Y~~SK~a~~~~~~~la~e~~~--i~v~~v~PG~v~T~~~~~~  275 (311)
T 3o26_A          233 GAAYTTSKACLNAYTRVLANKIPK--FQVNCVCPGLVKTEMNYGI  275 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTT--SEEEEECCCSBCSGGGTTC
T ss_pred             chhhHHHHHHHHHHHHHHHhhcCC--ceEEEecCCceecCCcCCC
Confidence            578999999999999999999974  999999999999 887654

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=100.00  E-value=3.4e-34  Score=248.86  Aligned_cols=239  Identities=15%  Similarity=0.080  Sum_probs=178.1

Q ss_pred             ccCCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCH-HHHHHHHHHHHhhCCCCceEEEE
Q psy4251          14 NKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCW-DKANDAISKILTEKPSAQCIAME   90 (292)
Q Consensus        14 ~~~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~-~~~~~~~~~l~~~~~~~~~~~~~   90 (292)
                      ..+..+..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+. ++++++.+++.... +.++.+++
T Consensus        12 ~~~~~~~~~l~~k~~l-VTGas------~gIG~ai---a~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~   80 (288)
T 2x9g_A           12 SGLVPRGSHMEAPAAV-VTGAA------KRIGRAI---AVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-SNTAVVCQ   80 (288)
T ss_dssp             ----------CCCEEE-ETTCS------SHHHHHH---HHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEE
T ss_pred             cccCCCCcCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc-CCceEEEE
Confidence            3344455678999999 99999      9999999   555667777765  4777 88888888886333 46899999


Q ss_pred             ccCCC----hHHHHHHHHHHHHhCCCccEEEEcccccC--CC-----CC-----CCCcchhhhhhhhhhHHHHHHHHHHH
Q psy4251          91 LDLCR----LKSVKKFAEEYQKKFRSLNILVLNAGVFG--LG-----FS-----HTEDGFETTFQVNHLAHFYLTLQLEN  154 (292)
Q Consensus        91 ~Dls~----~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~-----~~-----~~~~~~~~~~~vN~~~~~~l~~~ll~  154 (292)
                      +|++|    .++++++++++.++++++|+||||||+..  +.     .+     .+.++|+..+++|+.+++++++.++|
T Consensus        81 ~Dv~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~  160 (288)
T 2x9g_A           81 ADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQ  160 (288)
T ss_dssp             CCCSCSTTHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             eecCCccCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999    99999999999999999999999999863  33     34     67788999999999999999999999


Q ss_pred             HHHhcC------CCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEE
Q psy4251         155 ALIKGA------KLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIAL  228 (292)
Q Consensus       155 ~l~~~~------~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v  228 (292)
                      .|.++.      .  ++||++||..+..+.            +       +...|++||+++..|+++++.++.++||+|
T Consensus       161 ~~~~~~~~~~~~~--g~iv~isS~~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~v  219 (288)
T 2x9g_A          161 RQKGTNPNCTSSN--LSIVNLCDAMVDQPC------------M-------AFSLYNMGKHALVGLTQSAALELAPYGIRV  219 (288)
T ss_dssp             HC--------CCC--EEEEEECCTTTTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred             HHhhcCCCCCCCC--eEEEEEecccccCCC------------C-------CCchHHHHHHHHHHHHHHHHHHhhccCeEE
Confidence            997754      5  899999999877654            2       678999999999999999999999999999


Q ss_pred             EEecCCccc-cccccccccCCccchhhhhhcccccc-CCHHHhhc------ccccCCCCCcccc-CCccc
Q psy4251         229 SSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVRPVT-NFQVDLTG------TAEKVGLSGLPDS-EWMWH  289 (292)
Q Consensus       229 ~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~------~~~~~~~~G~~~~-~~~w~  289 (292)
                      |+|+||+|. ++ +.. .. ....+....  ..... .+|++.|.      ++.....+|+.+. +.-|+
T Consensus       220 n~v~PG~v~t~~-~~~-~~-~~~~~~~~~--p~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~  284 (288)
T 2x9g_A          220 NGVAPGVSLLPV-AMG-EE-EKDKWRRKV--PLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLS  284 (288)
T ss_dssp             EEEEESSCSCCT-TSC-HH-HHHHHHHTC--TTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred             EEEEeccccCcc-ccC-hH-HHHHHHhhC--CCCCCCCCHHHHHHHHHHHhCccccCccCCEEEECcchh
Confidence            999999999 88 321 10 001111111  11123 68999987      5556677888763 44443

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=100.00  E-value=8.4e-34  Score=242.77  Aligned_cols=228  Identities=15%  Similarity=0.106  Sum_probs=183.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.  +.++.++++|++|.++
T Consensus        10 ~~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~   77 (260)
T 2zat_A           10 KPLENKVAL-VTAST------DGIGLAI---ARRLAQDGAHVVVSSRKQENVDRTVATLQGE--GLSVTGTVCHVGKAED   77 (260)
T ss_dssp             CTTTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEccCCCHHH
Confidence            568899999 99999      9999999   666777787776  48988888888888765  5578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..   +..+.+.++|++.+++|+.++++++++++|.|.+++.  ++||++||..+.
T Consensus        78 ~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~  155 (260)
T 2zat_A           78 RERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGG--GSVLIVSSVGAY  155 (260)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--CEEEEEechhhc
Confidence            99999999999999999999999752   4456788999999999999999999999999987777  999999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc-cchh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP-VRTF  253 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~-~~~~  253 (292)
                      .+.            +       +...|++||++++.|+++++.++.++||+||+|+||++. ++.+........ ..+.
T Consensus       156 ~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~  216 (260)
T 2zat_A          156 HPF------------P-------NLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMK  216 (260)
T ss_dssp             SCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHH
T ss_pred             CCC------------C-------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHH
Confidence            654            2       678999999999999999999999999999999999999 886543211000 0111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ......+|++.|.      ++.....+|+.+
T Consensus       217 ~~~--~~~~~~~~~dva~~v~~l~s~~~~~~tG~~~  250 (260)
T 2zat_A          217 ESL--RIRRLGNPEDCAGIVSFLCSEDASYITGETV  250 (260)
T ss_dssp             HHH--TCSSCBCGGGGHHHHHHHTSGGGTTCCSCEE
T ss_pred             hcC--CCCCCCCHHHHHHHHHHHcCcccCCccCCEE
Confidence            111  1123568888887      344455677654

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=100.00  E-value=1.8e-34  Score=248.18  Aligned_cols=223  Identities=15%  Similarity=0.085  Sum_probs=174.2

Q ss_pred             CCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          17 LHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        17 ~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      +.+..+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+..            ...+..+++|++
T Consensus         6 ~~~~~~~~~k~vl-VTGas------~GIG~ai---a~~l~~~G~~V~~~~r~~~~~------------~~~~~~~~~Dv~   63 (269)
T 3vtz_A            6 HHHMEEFTDKVAI-VTGGS------SGIGLAV---VDALVRYGAKVVSVSLDEKSD------------VNVSDHFKIDVT   63 (269)
T ss_dssp             ----CTTTTCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEEEESCC--C------------TTSSEEEECCTT
T ss_pred             cccccCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCchhc------------cCceeEEEecCC
Confidence            4456789999999 99999      9999999   6667788888764  654332            125778999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      |.++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||.
T Consensus        64 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~--g~iv~isS~  141 (269)
T 3vtz_A           64 NEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGH--GSIINIASV  141 (269)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCG
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CEEEEECch
Confidence            999999999999999999999999999863  4566788999999999999999999999999988777  999999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc---CC
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF---GT  248 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~---~~  248 (292)
                      .+..+.            +       +...|++||+++++|+++++.|+.+ ||+||+|+||+|. ++.+.....   ..
T Consensus       142 ~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~-~i~vn~v~PG~v~T~~~~~~~~~~~~~~  201 (269)
T 3vtz_A          142 QSYAAT------------K-------NAAAYVTSKHALLGLTRSVAIDYAP-KIRCNAVCPGTIMTPMVIKAAKMEVGED  201 (269)
T ss_dssp             GGTSBC------------T-------TCHHHHHHHHHHHHHHHHHHHHHTT-TEEEEEEEECSBCCHHHHHHHHHHHCCS
T ss_pred             hhccCC------------C-------CChhHHHHHHHHHHHHHHHHHHhcC-CCEEEEEEECCCcCcchhhhhhcccccc
Confidence            887765            2       6789999999999999999999988 8999999999999 876543210   00


Q ss_pred             c---cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 P---VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~---~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .   ......+..  ......+|++.|.      ++.....+|+.+
T Consensus       202 ~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i  247 (269)
T 3vtz_A          202 ENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLASDRSSFITGACL  247 (269)
T ss_dssp             TTHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             chhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCccCCCcCcEE
Confidence            0   011111111  1223458999887      555566777765

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=100.00  E-value=5.5e-34  Score=249.03  Aligned_cols=190  Identities=13%  Similarity=0.124  Sum_probs=170.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.++
T Consensus        27 ~~l~gk~vl-VTGas------~gIG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~   94 (301)
T 3tjr_A           27 SGFDGRAAV-VTGGA------SGIGLAT---ATEFARRGARLVLSDVDQPALEQAVNGLRGQ--GFDAHGVVCDVRHLDE   94 (301)
T ss_dssp             CCSTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             hccCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEEccCCCHHH
Confidence            348899999 99999      9999999   666777787766  49999999999999876  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.|+++++++++|.|.+++ .  ++||++||..+.
T Consensus        95 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~--g~iv~isS~~~~  172 (301)
T 3tjr_A           95 MVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTG--GHIAFTASFAGL  172 (301)
T ss_dssp             HHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC--cEEEEeCchhhc
Confidence            99999999999999999999999873  456778999999999999999999999999998765 6  899999999888


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+.            +       +...|++||++++.|+++++.++.+.||+|++|+||+|+ ++.+..
T Consensus       173 ~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~  222 (301)
T 3tjr_A          173 VPN------------A-------GLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNS  222 (301)
T ss_dssp             SCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHH
T ss_pred             CCC------------C-------CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccccccc
Confidence            765            3       678999999999999999999999999999999999999 887653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=100.00  E-value=3.1e-34  Score=250.07  Aligned_cols=225  Identities=12%  Similarity=0.041  Sum_probs=178.2

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      ..+++||+++ ||||+      +  |||+++   +.+|++.|+.|+.  |+.+..+.. +++.+..  ..+.+++||++|
T Consensus        25 ~~~l~~k~vl-VTGas------g~~GIG~~i---a~~la~~G~~V~~~~r~~~~~~~~-~~~~~~~--~~~~~~~~Dv~d   91 (296)
T 3k31_A           25 GMLMEGKKGV-IIGVA------NDKSLAWGI---AKAVCAQGAEVALTYLSETFKKRV-DPLAESL--GVKLTVPCDVSD   91 (296)
T ss_dssp             CCTTTTCEEE-EECCC------STTSHHHHH---HHHHHHTTCEEEEEESSGGGHHHH-HHHHHHH--TCCEEEECCTTC
T ss_pred             hhccCCCEEE-EEeCC------CCCCHHHHH---HHHHHHCCCEEEEEeCChHHHHHH-HHHHHhc--CCeEEEEcCCCC
Confidence            3568999999 99998      7  999999   6667788887764  775443333 3333332  346889999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEccccc------CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVF------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV  169 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~------~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v  169 (292)
                      .++++++++++.+++++||+||||||+.      .+..+.+.++|++.+++|+.++++++++++|.|.+  .  ++||++
T Consensus        92 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~--g~IV~i  167 (296)
T 3k31_A           92 AESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN--G--GSILTL  167 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--C--EEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C--CEEEEE
Confidence            9999999999999999999999999986      34567789999999999999999999999999875  4  999999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT  248 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~  248 (292)
                      ||..+..+.            +       +...|++||+++..|+++++.|+.++||+||+|+||+|. ++.+.....  
T Consensus       168 sS~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~--  226 (296)
T 3k31_A          168 SYYGAEKVV------------P-------HYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDF--  226 (296)
T ss_dssp             ECGGGTSCC------------T-------TTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHH--
T ss_pred             EehhhccCC------------C-------CchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccch--
Confidence            999887654            2       678999999999999999999999999999999999999 887654321  


Q ss_pred             ccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 PVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       .........  ......+|++.|.      ++.....+|+.+
T Consensus       227 -~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i  268 (296)
T 3k31_A          227 -HYILTWNKYNSPLRRNTTLDDVGGAALYLLSDLGRGTTGETV  268 (296)
T ss_dssp             -HHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             -HHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCCEE
Confidence             011111111  2223568999987      555667788866

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=100.00  E-value=1.5e-34  Score=251.49  Aligned_cols=231  Identities=25%  Similarity=0.238  Sum_probs=174.3

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|.+
T Consensus        11 ~~~l~gk~vl-VTGas------~gIG~~~---a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~   75 (291)
T 3rd5_A           11 LPSFAQRTVV-ITGAN------SGLGAVT---ARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLS   75 (291)
T ss_dssp             CCCCTTCEEE-EECCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHH
T ss_pred             ccCCCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHH
Confidence            3568999999 99999      9999999   666777787776  48988887776554     468999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++++    +++|+||||||+..+..+.+.++|+.++++|+.|+++++++++|.|.      .|||++||..+..+
T Consensus        76 ~v~~~~~~~----~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~------~riv~isS~~~~~~  145 (291)
T 3rd5_A           76 SVRRFADGV----SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLT------DRVVTVSSMAHWPG  145 (291)
T ss_dssp             HHHHHHHTC----CCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEE------EEEEEECCGGGTTC
T ss_pred             HHHHHHHhc----CCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------hheeEeechhhccC
Confidence            999998876    78999999999987777789999999999999999999999999886      69999999988765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCC--eEEEEecCCccc-cccccccccCCccchhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYK--IALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~g--i~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      ...     ++++.. ....+.+...|++||++++.|++++++++.+.|  |+||+|+||+|+ ++.+..... ....+..
T Consensus       146 ~~~-----~~~~~~-~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~-~~~~~~~  218 (291)
T 3rd5_A          146 RIN-----LEDLNW-RSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRK-LGDALMS  218 (291)
T ss_dssp             CCC-----SSCTTC-SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC---------------
T ss_pred             CCC-----cccccc-cccCCCCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchH-HHHHHHH
Confidence            432     222222 123455788999999999999999999998877  999999999999 998775321 1112222


Q ss_pred             hhhccccccCCHHHhhc----ccccCCCCCcccc
Q psy4251         255 WISRVRPVTNFQVDLTG----TAEKVGLSGLPDS  284 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~----~~~~~~~~G~~~~  284 (292)
                      ..  ...+..+|+++|.    .......+|+++.
T Consensus       219 ~~--~~~~~~~~~~~A~~~~~l~~~~~~~G~~~~  250 (291)
T 3rd5_A          219 AA--TRVVATDADFGARQTLYAASQDLPGDSFVG  250 (291)
T ss_dssp             --------CHHHHHHHHHHHHHHHSCCCTTCEEE
T ss_pred             HH--HHHHhCCHHHHHHHHHHHHcCCCCCCceeC
Confidence            22  3334556999887    1111367888874

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=100.00  E-value=2.7e-34  Score=253.28  Aligned_cols=229  Identities=14%  Similarity=0.112  Sum_probs=182.2

Q ss_pred             CCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC----------HHHHHHHHHHHHhhCCCC
Q psy4251          17 LHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC----------WDKANDAISKILTEKPSA   84 (292)
Q Consensus        17 ~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~----------~~~~~~~~~~l~~~~~~~   84 (292)
                      |....+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+          .+.+++..+++.+.  +.
T Consensus        19 p~~m~~l~gk~vl-VTGas------~GIG~ai---a~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~   86 (322)
T 3qlj_A           19 PGSMGVVDGRVVI-VTGAG------GGIGRAH---ALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA--GG   86 (322)
T ss_dssp             ---CCTTTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT--TC
T ss_pred             CchhcccCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc--CC
Confidence            3344668999999 99999      9999999   6667788888775  55          67788888888776  56


Q ss_pred             ceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC-
Q psy4251          85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK-  161 (292)
Q Consensus        85 ~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~-  161 (292)
                      ++.++++|++|.++++++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|.+... 
T Consensus        87 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~  166 (322)
T 3qlj_A           87 EAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKA  166 (322)
T ss_dssp             EEEEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcccc
Confidence            8999999999999999999999999999999999999874  4567789999999999999999999999999875320 


Q ss_pred             ---CCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-
Q psy4251         162 ---LFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-  237 (292)
Q Consensus       162 ---~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-  237 (292)
                         +.++||++||..+..+.            +       +...|++||++++.|+++++.|+.+.||+||+|+|| +. 
T Consensus       167 ~~~~~g~IV~isS~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t  226 (322)
T 3qlj_A          167 GKAVDGRIINTSSGAGLQGS------------V-------GQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ART  226 (322)
T ss_dssp             TCCCCEEEEEECCHHHHHCB------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTS
T ss_pred             CCCCCcEEEEEcCHHHccCC------------C-------CCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCC
Confidence               01799999999888765            2       678999999999999999999999999999999999 88 


Q ss_pred             cccccccccCCccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         238 TVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ++.......    ......  ......+|++.|.      ++.....+|+.+
T Consensus       227 ~~~~~~~~~----~~~~~~--~~~~~~~pedva~~v~~L~s~~~~~itG~~i  272 (322)
T 3qlj_A          227 RMTETVFAE----MMATQD--QDFDAMAPENVSPLVVWLGSAEARDVTGKVF  272 (322)
T ss_dssp             CCSCCSCCC--------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEE
T ss_pred             ccchhhhhh----hhhccc--cccCCCCHHHHHHHHHHHhCccccCCCCCEE
Confidence            777654321    111111  1112347888776      455556677766

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=100.00  E-value=1e-33  Score=243.25  Aligned_cols=226  Identities=13%  Similarity=0.041  Sum_probs=184.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++.+|+++ ||||+      +|||+++   +.+|+++|+.|++   |+.+++++..+++.+.  +.++.++++|++|.+
T Consensus        22 ~~l~~k~vl-VTGas------~gIG~~l---a~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~   89 (267)
T 4iiu_A           22 SNAMSRSVL-VTGAS------KGIGRAI---ARQLAADGFNIGVHYHRDAAGAQETLNAIVAN--GGNGRLLSFDVANRE   89 (267)
T ss_dssp             ---CCCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             cccCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--CCceEEEEecCCCHH
Confidence            457899999 99999      9999999   6667788877742   7888899999988876  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHH-hcCCCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALI-KGAKLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~-~~~~~~~~iV~vsS~~~  174 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.+++++++.+++.|. ++..  ++||++||..+
T Consensus        90 ~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~--g~iv~isS~~~  167 (267)
T 4iiu_A           90 QCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQG--GRIITLSSVSG  167 (267)
T ss_dssp             HHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC--EEEEEECCHHH
T ss_pred             HHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--cEEEEEcchHh
Confidence            999999999999999999999999874  345678899999999999999999999998886 4556  99999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       +...|++||+++..|+++++.++.+.||+||+|+||+|+ ++.+.....  .....
T Consensus       168 ~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~  226 (267)
T 4iiu_A          168 VMGN------------R-------GQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEMEESA--LKEAM  226 (267)
T ss_dssp             HHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCCHHH--HHHHH
T ss_pred             ccCC------------C-------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCcccccHHH--HHHHH
Confidence            8765            3       678999999999999999999999999999999999999 887654211  11111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ......+|++.|.      ++.....+|+.+
T Consensus       227 ~~~--p~~~~~~~edva~~~~~L~s~~~~~itG~~i  260 (267)
T 4iiu_A          227 SMI--PMKRMGQAEEVAGLASYLMSDIAGYVTRQVI  260 (267)
T ss_dssp             HTC--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hcC--CCCCCcCHHHHHHHHHHHhCCcccCccCCEE
Confidence            111  2223568999887      555667788865

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=100.00  E-value=6.5e-34  Score=243.84  Aligned_cols=190  Identities=17%  Similarity=0.161  Sum_probs=166.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.. +.++.++++|++|.++
T Consensus         3 ~~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~   71 (263)
T 3ai3_A            3 MGISGKVAV-ITGSS------SGIGLAI---AEGFAKEGAHIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEG   71 (263)
T ss_dssp             CCCTTCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHH
T ss_pred             CCCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHH
Confidence            357899999 99999      9999999   666777787776  489888888888886542 3478899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.+++.++++++|.|.+++.  ++||++||..+..
T Consensus        72 ~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~  149 (263)
T 3ai3_A           72 VDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGG--GAIIHNASICAVQ  149 (263)
T ss_dssp             HHHHHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEECchhhcC
Confidence            99999999999999999999999863  4567788999999999999999999999999987766  9999999998776


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       +...|++||++++.++++++.++.++||+||+|+||+|. ++.+.
T Consensus       150 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~  197 (263)
T 3ai3_A          150 PL------------W-------YEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIK  197 (263)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHH
T ss_pred             CC------------C-------CcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhh
Confidence            54            2       677899999999999999999999899999999999999 87654

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=6.7e-34  Score=241.37  Aligned_cols=220  Identities=12%  Similarity=0.087  Sum_probs=175.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +  +.++++|++|.+++
T Consensus         2 ~l~~k~vl-VTGas------~giG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~--~~~~~~D~~~~~~~   64 (245)
T 1uls_A            2 RLKDKAVL-ITGAA------HGIGRAT---LELFAKEGARLVACDIEEGPLREAAEAV-----G--AHPVVMDVADPASV   64 (245)
T ss_dssp             TTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHTT-----T--CEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHc-----C--CEEEEecCCCHHHH
Confidence            46789999 99999      9999999   566777887776  48887776655433     2  78899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.+++.  ++||++||.. ..+
T Consensus        65 ~~~~~~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~--g~iv~isS~~-~~~  141 (245)
T 1uls_A           65 ERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNP--GSIVLTASRV-YLG  141 (245)
T ss_dssp             HHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--EEEEEECCGG-GGC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CEEEEEccch-hcC
Confidence            9999999999999999999999863  4466788999999999999999999999999987766  9999999987 544


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|++||+++..|+++++.|+.++||+||+|+||+|+ ++.+..... ....+....
T Consensus       142 ~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~~~~~~~  201 (245)
T 1uls_A          142 N------------L-------GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEK-VREKAIAAT  201 (245)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHH-HHHHHHHTC
T ss_pred             C------------C-------CchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcCHH-HHHHHHhhC
Confidence            3            2       577899999999999999999999999999999999999 886543210 000111111


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ......+|++.|.      ++.....+|+.+
T Consensus       202 --p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~  232 (245)
T 1uls_A          202 --PLGRAGKPLEVAYAALFLLSDESSFITGQVL  232 (245)
T ss_dssp             --TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             --CCCCCcCHHHHHHHHHHHhCchhcCCcCCEE
Confidence              1123568999887      444556778765

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-34  Score=243.95  Aligned_cols=222  Identities=16%  Similarity=0.094  Sum_probs=172.8

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ||+++ ||||+      +|||+++|+.+.+. ..++.|+  .|+.++++++.+++     +.++.++++|++|.++++++
T Consensus         2 gk~~l-VTGas------~GIG~aia~~l~~~-g~~~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~   68 (254)
T 3kzv_A            2 GKVIL-VTGVS------RGIGKSIVDVLFSL-DKDTVVYGVARSEAPLKKLKEKY-----GDRFFYVVGDITEDSVLKQL   68 (254)
T ss_dssp             CCEEE-ECSTT------SHHHHHHHHHHHHH-CSSCEEEEEESCHHHHHHHHHHH-----GGGEEEEESCTTSHHHHHHH
T ss_pred             CCEEE-EECCC------chHHHHHHHHHHhc-CCCeEEEEecCCHHHHHHHHHHh-----CCceEEEECCCCCHHHHHHH
Confidence            68888 99999      99999995554433 2245654  48888888877765     45899999999999999999


Q ss_pred             HHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++++.++++++|+||||||+.   .+..+.+.++|++.+++|+.|+++++++++|+|++++   ++||++||..+..+. 
T Consensus        69 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~---g~iv~isS~~~~~~~-  144 (254)
T 3kzv_A           69 VNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN---GNVVFVSSDACNMYF-  144 (254)
T ss_dssp             HHHHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCSCCCCSS-
T ss_pred             HHHHHHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---CeEEEEcCchhccCC-
Confidence            999999999999999999985   3456788999999999999999999999999998764   899999999877654 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC----Cccchhh
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG----TPVRTFS  254 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~----~~~~~~~  254 (292)
                                 +       +...|++||++++.|+++++.|+  .||+||+|+||+|+ ++.+......    .......
T Consensus       145 -----------~-------~~~~Y~asK~a~~~~~~~la~e~--~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~  204 (254)
T 3kzv_A          145 -----------S-------SWGAYGSSKAALNHFAMTLANEE--RQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLK  204 (254)
T ss_dssp             -----------C-------CSHHHHHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHH
T ss_pred             -----------C-------CcchHHHHHHHHHHHHHHHHhhc--cCcEEEEEeCCcccchhHHHhhcccCccccCHHHHH
Confidence                       2       67899999999999999999998  48999999999999 8887643211    0111111


Q ss_pred             hhhc--cccccCCHHHhhc------ccc-cCCCCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAE-KVGLSGLPD  283 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~-~~~~~G~~~  283 (292)
                      .+..  ......+|++.|.      ++. ....+|+++
T Consensus       205 ~~~~~~~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i  242 (254)
T 3kzv_A          205 MFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYL  242 (254)
T ss_dssp             HHHHHHTTC----CHHHHHHHHHHHHHCCCGGGTTCEE
T ss_pred             HHHHHHhcCCcCCcccHHHHHHHHHhhcccCCCCccEE
Confidence            1111  1223568888887      444 256788876

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=100.00  E-value=6.6e-34  Score=243.45  Aligned_cols=220  Identities=14%  Similarity=0.086  Sum_probs=165.9

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++.+.   +.+.    .+.++++|++|.+
T Consensus        22 ~m~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~---~~~~----~~~~~~~Dv~~~~   84 (260)
T 3gem_A           22 HMTLSSAPIL-ITGAS------QRVGLHC---ALRLLEHGHRVIISYRTEHASVTE---LRQA----GAVALYGDFSCET   84 (260)
T ss_dssp             -----CCCEE-ESSTT------SHHHHHH---HHHHHHTTCCEEEEESSCCHHHHH---HHHH----TCEEEECCTTSHH
T ss_pred             CcCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCChHHHHHH---HHhc----CCeEEECCCCCHH
Confidence            4668999999 99999      9999999   555667777665  4776554333   3333    3788999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC-CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~-~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++++.++++++|+||||||+.. ...+.+.++|++.+++|+.|+++++++++|+|.+++.  ++||++||..+..
T Consensus        85 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~--g~iv~isS~~~~~  162 (260)
T 3gem_A           85 GIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEV--ADIVHISDDVTRK  162 (260)
T ss_dssp             HHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSS--CEEEEECCGGGGT
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cEEEEECChhhcC
Confidence            999999999999999999999999874 3356677899999999999999999999999998877  9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||++++.|+++++.|+.+ +|+||+|+||+|. ++.....   ....+...
T Consensus       163 ~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~-~Irvn~v~PG~v~t~~~~~~~---~~~~~~~~  219 (260)
T 3gem_A          163 GS------------S-------KHIAYCATKAGLESLTLSFAARFAP-LVKVNGIAPALLMFQPKDDAA---YRANALAK  219 (260)
T ss_dssp             CC------------S-------SCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECTTCC------------------
T ss_pred             CC------------C-------CcHhHHHHHHHHHHHHHHHHHHHCC-CCEEEEEeecccccCCCCCHH---HHHHHHhc
Confidence            65            2       6789999999999999999999988 7999999999999 7654221   11122222


Q ss_pred             hhccccccCCHHHhhc----ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG----TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~----~~~~~~~~G~~~  283 (292)
                      .  ......+|++.|.    ..+....+|+.+
T Consensus       220 ~--p~~r~~~~edva~~v~~L~~~~~itG~~i  249 (260)
T 3gem_A          220 S--ALGIEPGAEVIYQSLRYLLDSTYVTGTTL  249 (260)
T ss_dssp             C--CSCCCCCTHHHHHHHHHHHHCSSCCSCEE
T ss_pred             C--CCCCCCCHHHHHHHHHHHhhCCCCCCCEE
Confidence            2  2233567888887    223456677755

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=100.00  E-value=1.2e-33  Score=243.49  Aligned_cols=227  Identities=13%  Similarity=0.060  Sum_probs=177.1

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE---EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY---QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~---~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .++|+++ ||||+      +|||+++   +.+|++.|+.|+   .|+.+.+++..+++.+.  +.++.++++|++|.+++
T Consensus        24 ~~~k~vl-ITGas------~gIG~a~---a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v   91 (272)
T 4e3z_A           24 SDTPVVL-VTGGS------RGIGAAV---CRLAARQGWRVGVNYAANREAADAVVAAITES--GGEAVAIPGDVGNAADI   91 (272)
T ss_dssp             CCSCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHH
T ss_pred             cCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc--CCcEEEEEcCCCCHHHH
Confidence            4678888 99999      9999999   666778888774   37888888888888766  56899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc---CCCCcEEEEEcCcc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG---AKLFARVVVVSSES  173 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~---~~~~~~iV~vsS~~  173 (292)
                      +++++++.++++++|+||||||+..   +..+.+.++|++.+++|+.|++++++.++|.|.+.   ..  ++||++||..
T Consensus        92 ~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~--g~iv~isS~~  169 (272)
T 4e3z_A           92 AAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQG--GAIVNVSSMA  169 (272)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC--EEEEEECCTH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCC--CEEEEEcchH
Confidence            9999999999999999999999863   34567889999999999999999999999999763   34  8999999998


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      +..+..           +       ....|++||++++.|++++++++.+.||+|++|+||+|. ++.+..........+
T Consensus       170 ~~~~~~-----------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~  231 (272)
T 4e3z_A          170 AILGSA-----------T-------QYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREM  231 (272)
T ss_dssp             HHHCCT-----------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------------
T ss_pred             hccCCC-----------C-------CcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChHHHHHH
Confidence            876542           1       456899999999999999999999999999999999999 887653211111111


Q ss_pred             hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....  ......+|++.|+      ++.....+|+.+
T Consensus       232 ~~~~--~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i  266 (272)
T 4e3z_A          232 APSV--PMQRAGMPEEVADAILYLLSPSASYVTGSIL  266 (272)
T ss_dssp             --CC--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hhcC--CcCCCcCHHHHHHHHHHHhCCccccccCCEE
Confidence            1111  2223457899887      555666788765

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=100.00  E-value=7e-34  Score=252.52  Aligned_cols=222  Identities=14%  Similarity=0.088  Sum_probs=181.9

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHH-------HHHHHHHHHhhCCCCceEEEE
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDK-------ANDAISKILTEKPSAQCIAME   90 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~-------~~~~~~~l~~~~~~~~~~~~~   90 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.++       +++..+++.+.  +.++.+++
T Consensus        40 ~~~l~gk~vl-VTGas------~GIG~ai---a~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~--g~~~~~~~  107 (346)
T 3kvo_A           40 TGRLAGCTVF-ITGAS------RGIGKAI---ALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV--GGKALPCI  107 (346)
T ss_dssp             CSTTTTCEEE-EETTT------SHHHHHH---HHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT--TCEEEEEE
T ss_pred             CCCCCCCEEE-EeCCC------hHHHHHH---HHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc--CCeEEEEE
Confidence            4678999999 99999      9999999   6667788887764  76543       56677777665  67899999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q psy4251          91 LDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVV  168 (292)
Q Consensus        91 ~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~  168 (292)
                      +|++|+++++++++++.+++++||+||||||+..  +..+.+.++|+..+++|+.|+++++++++|+|++++.  ++||+
T Consensus       108 ~Dv~d~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~--g~IV~  185 (346)
T 3kvo_A          108 VDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKV--AHILN  185 (346)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSS--CEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC--CEEEE
Confidence            9999999999999999999999999999999863  5577888999999999999999999999999998877  99999


Q ss_pred             EcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCc-cc-ccccccccc
Q psy4251         169 VSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCW-KI-TVSKKWWRF  246 (292)
Q Consensus       169 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~-v~-~~~~~~~~~  246 (292)
                      +||..+..+..          .+       +...|++||+++.+|+++++.|+. .||+||+|+||+ +. ++.+.....
T Consensus       186 iSS~~~~~~~~----------~~-------~~~~Y~aSKaal~~l~~~la~e~~-~gIrvn~v~PG~~i~T~~~~~~~~~  247 (346)
T 3kvo_A          186 ISPPLNLNPVW----------FK-------QHCAYTIAKYGMSMYVLGMAEEFK-GEIAVNALWPKTAIHTAAMDMLGGP  247 (346)
T ss_dssp             ECCCCCCCGGG----------TS-------SSHHHHHHHHHHHHHHHHHHHHTT-TTCEEEEEECSBCBCCHHHHHHCC-
T ss_pred             ECCHHHcCCCC----------CC-------CchHHHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCCccccHHHHhhccc
Confidence            99988765420          02       678999999999999999999999 899999999995 77 776554321


Q ss_pred             CCccchhhhhhccccccCCHHHhhc------ccccCCCCCccccC
Q psy4251         247 GTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPDSE  285 (292)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~~~  285 (292)
                          .       ......+|++.|.      ++ ....+|+++.|
T Consensus       248 ----~-------~~~r~~~pedvA~~v~~L~s~-~~~itG~~ivd  280 (346)
T 3kvo_A          248 ----G-------IESQCRKVDIIADAAYSIFQK-PKSFTGNFVID  280 (346)
T ss_dssp             ------------CGGGCBCTHHHHHHHHHHHTS-CTTCCSCEEEH
T ss_pred             ----c-------ccccCCCHHHHHHHHHHHHhc-CCCCCceEEEC
Confidence                0       1112458888887      34 56678887743

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=100.00  E-value=1.4e-33  Score=244.21  Aligned_cols=224  Identities=17%  Similarity=0.113  Sum_probs=173.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|.+++
T Consensus         2 ~l~gk~~l-VTGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v   66 (281)
T 3zv4_A            2 KLTGEVAL-ITGGA------SGLGRAL---VDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVGDVRSLQDQ   66 (281)
T ss_dssp             TTTTCEEE-EETCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHT-----BTTEEEEECCTTCHHHH
T ss_pred             CcCCCEEE-EECCC------cHHHHHH---HHHHHHCcCEEEEEeCCHHHHHHHHHHc-----CCcEEEEEcCCCCHHHH
Confidence            57899999 99999      9999999   666777887776  48888877765543     46899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCC---C----CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGL---G----FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~---~----~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +++++++.++++++|+||||||+...   .    .+.+.++|++.+++|+.++++++++++|+|.++.   ++||++||.
T Consensus        67 ~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~---g~iv~isS~  143 (281)
T 3zv4_A           67 KRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR---GSVVFTISN  143 (281)
T ss_dssp             HHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCG
T ss_pred             HHHHHHHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC---CeEEEEecc
Confidence            99999999999999999999998632   1    2334457999999999999999999999997754   899999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc----C
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF----G  247 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~----~  247 (292)
                      .+..+.            +       +...|++||+++++|+++++.|+.+. |+||+|+||+|+ ++.......    .
T Consensus       144 ~~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~-Irvn~v~PG~v~T~~~~~~~~~~~~~~  203 (281)
T 3zv4_A          144 AGFYPN------------G-------GGPLYTATKHAVVGLVRQMAFELAPH-VRVNGVAPGGMNTDLRGPSSLGLSEQS  203 (281)
T ss_dssp             GGTSSS------------S-------SCHHHHHHHHHHHHHHHHHHHHHTTT-SEEEEEEECSSCC--CCCTTCC-----
T ss_pred             hhccCC------------C-------CCchhHHHHHHHHHHHHHHHHHhcCC-CEEEEEECCcCcCCccccccccccccc
Confidence            887665            2       67889999999999999999999886 999999999999 886542110    0


Q ss_pred             C-ccchhhhhhc--cccccCCHHHhhc------c-cccCCCCCccc
Q psy4251         248 T-PVRTFSWISR--VRPVTNFQVDLTG------T-AEKVGLSGLPD  283 (292)
Q Consensus       248 ~-~~~~~~~~~~--~~~~~~~~~~~a~------~-~~~~~~~G~~~  283 (292)
                      . .......+..  ......+|+|.|.      + +.....+|+.+
T Consensus       204 ~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i  249 (281)
T 3zv4_A          204 ISSVPLADMLKSVLPIGRMPALEEYTGAYVFFATRGDSLPATGALL  249 (281)
T ss_dssp             ---CCHHHHHHHTCTTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEE
T ss_pred             ccchhHHHHHHhcCCCCCCCCHHHHHHHHHHhhcccccccccCcEE
Confidence            0 0011111111  2223568888887      4 55666788866

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=100.00  E-value=5.4e-34  Score=244.77  Aligned_cols=211  Identities=11%  Similarity=0.043  Sum_probs=169.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++.+|+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..        ..++.++++|++|.++
T Consensus        12 ~~~~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dv~d~~~   73 (266)
T 3p19_A           12 RGSMKKLVV-ITGAS------SGIGEAI---ARRFSEEGHPLLLLARRVERLKALN--------LPNTLCAQVDVTDKYT   73 (266)
T ss_dssp             ---CCCEEE-EESTT------SHHHHHH---HHHHHHTTCCEEEEESCHHHHHTTC--------CTTEEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHhh--------cCCceEEEecCCCHHH
Confidence            457899999 99999      9999999   666777777665  48876654321        3378899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|++++.  ++||++||..+..
T Consensus        74 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~--g~IV~isS~~~~~  151 (266)
T 3p19_A           74 FDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNC--GTIINISSIAGKK  151 (266)
T ss_dssp             HHHHHHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEEcChhhCC
Confidence            99999999999999999999999863  5567788999999999999999999999999988777  9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||+++..|+++++.++.++||+||+|+||+|. ++.+..........+..+
T Consensus       152 ~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~  212 (266)
T 3p19_A          152 TF------------P-------DHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAW  212 (266)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHH
T ss_pred             CC------------C-------CCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhh
Confidence            64            2       678999999999999999999999999999999999999 887764321000111111


Q ss_pred             hhccccccCCHHHhhc
Q psy4251         256 ISRVRPVTNFQVDLTG  271 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~  271 (292)
                      . .......+|++.|.
T Consensus       213 ~-~~~~r~~~pedvA~  227 (266)
T 3p19_A          213 R-VDMGGVLAADDVAR  227 (266)
T ss_dssp             H-HHTTCCBCHHHHHH
T ss_pred             c-ccccCCCCHHHHHH
Confidence            0 01123568888887

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=100.00  E-value=1.2e-33  Score=243.99  Aligned_cols=229  Identities=13%  Similarity=0.136  Sum_probs=183.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +..|+++|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.+++
T Consensus        19 ~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~~~~~v   86 (277)
T 2rhc_B           19 TQDSEVAL-VTGAT------SGIGLEI---ARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEI   86 (277)
T ss_dssp             CTTSCEEE-EETCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHH
T ss_pred             cCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHH
Confidence            58899999 99999      9999999   566667787776  48998888888888765  45789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHH--HHhcCCCCcEEEEEcCcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENA--LIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~--l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.++++++++++|.  |.+++.  ++||++||..+.
T Consensus        87 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~--g~iv~isS~~~~  164 (277)
T 2rhc_B           87 EALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT--GRIVNIASTGGK  164 (277)
T ss_dssp             HHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTE--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCC--eEEEEECccccc
Confidence            9999999999999999999999863  3456788899999999999999999999998  877666  899999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc---c--CCc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR---F--GTP  249 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~---~--~~~  249 (292)
                      .+.            +       +...|++||++++.|+++++.|+.+.||+||+|+||++. ++.+....   .  ...
T Consensus       165 ~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~  225 (277)
T 2rhc_B          165 QGV------------V-------HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVS  225 (277)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCC
T ss_pred             cCC------------C-------CCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccc
Confidence            654            2       678899999999999999999999999999999999999 87654310   0  000


Q ss_pred             -cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 -VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 -~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ......+..  ......+|++.|+      ++.....+|+.+
T Consensus       226 ~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~  268 (277)
T 2rhc_B          226 TEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQAL  268 (277)
T ss_dssp             HHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEE
Confidence             011111101  1122568999887      444556778765

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2e-33  Score=242.50  Aligned_cols=228  Identities=18%  Similarity=0.117  Sum_probs=181.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.+++++..+++.+.  + ++.++++|++|.++
T Consensus        25 ~~l~~k~vl-VTGas------~gIG~ai---a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~-~~~~~~~Dv~d~~~   91 (276)
T 2b4q_A           25 FSLAGRIAL-VTGGS------RGIGQMI---AQGLLEAGARVFICARDAEACADTATRLSAY--G-DCQAIPADLSSEAG   91 (276)
T ss_dssp             TCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEECSCHHHHHHHHHHHTTS--S-CEEECCCCTTSHHH
T ss_pred             cCCCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--C-ceEEEEeeCCCHHH
Confidence            458899999 99999      9999999   6667778877764  8888888888877543  3 78899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC--CCcEEEEEcCccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK--LFARVVVVSSESH  174 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~--~~~~iV~vsS~~~  174 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.+++.++++++|.|.++..  +.++||++||..+
T Consensus        92 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~  171 (276)
T 2b4q_A           92 ARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAG  171 (276)
T ss_dssp             HHHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHH
Confidence            99999999999999999999999863  4567788999999999999999999999999976531  1179999999987


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhh-HHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMT-AYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      ..+.            +       ... .|++||++++.|+++++.|+.+.||+||+|+||++. ++.+..... ....+
T Consensus       172 ~~~~------------~-------~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-~~~~~  231 (276)
T 2b4q_A          172 ISAM------------G-------EQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIAND-PQALE  231 (276)
T ss_dssp             TCCC------------C-------CSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHHC-HHHHH
T ss_pred             cCCC------------C-------CCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcchh-HHHHH
Confidence            7654            2       345 899999999999999999999889999999999999 887653211 00111


Q ss_pred             hh--hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FS--WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~--~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ..  ......+|++.|.      ++.....+|+.+
T Consensus       232 ~~~~~~--p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i  268 (276)
T 2b4q_A          232 ADSASI--PMGRWGRPEEMAALAISLAGTAGAYMTGNVI  268 (276)
T ss_dssp             HHHHTS--TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HhhcCC--CCCCcCCHHHHHHHHHHHhCccccCCCCCEE
Confidence            11  11  1123568999887      444556788765

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=100.00  E-value=1.8e-33  Score=248.54  Aligned_cols=225  Identities=12%  Similarity=0.057  Sum_probs=180.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--E-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH-
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--Q-NCWDKANDAISKILTEKPSAQCIAMELDLCRLK-   97 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~-   97 (292)
                      +++||+++ ||||+      +|||+++   +..|++.|+.|+  . |+.++++++.+++.... +.++.++++|++|.+ 
T Consensus        43 ~l~~k~~l-VTGas------~GIG~ai---a~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~d~~~  111 (328)
T 2qhx_A           43 APTVPVAL-VTGAA------KRLGRSI---AEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVAT  111 (328)
T ss_dssp             --CCCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCB
T ss_pred             ccCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCeEEEEEeeCCCchh
Confidence            38899999 99999      9999999   666777787765  5 89999998888886333 468999999999999 


Q ss_pred             ----------------HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCC--------------CcchhhhhhhhhhHH
Q psy4251          98 ----------------SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHT--------------EDGFETTFQVNHLAH  145 (292)
Q Consensus        98 ----------------~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~--------------~~~~~~~~~vN~~~~  145 (292)
                                      +++++++++.++++++|+||||||+..  +..+.+              .++|+..+++|+.++
T Consensus       112 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~  191 (328)
T 2qhx_A          112 APVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAP  191 (328)
T ss_dssp             CC-------CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHH
T ss_pred             ccccccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHH
Confidence                            999999999999999999999999863  445566              788999999999999


Q ss_pred             HHHHHHHHHHHHhcC------CCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHh
Q psy4251         146 FYLTLQLENALIKGA------KLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLAT  219 (292)
Q Consensus       146 ~~l~~~ll~~l~~~~------~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~  219 (292)
                      ++++++++|.|.++.      .  ++||++||..+..+.            +       +...|++||+++..|+++++.
T Consensus       192 ~~l~~~~~~~m~~~~~~~~~~~--g~IV~isS~~~~~~~------------~-------~~~~Y~asKaal~~l~~~la~  250 (328)
T 2qhx_A          192 YFLIKAFAHRVAGTPAKHRGTN--YSIINMVDAMTNQPL------------L-------GYTIYTMAKGALEGLTRSAAL  250 (328)
T ss_dssp             HHHHHHHHHHHHHSCGGGSCSC--EEEEEECCTTTTSCC------------T-------TCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcCCCCC--cEEEEECchhhccCC------------C-------CcHHHHHHHHHHHHHHHHHHH
Confidence            999999999998765      6  899999999877654            2       678999999999999999999


Q ss_pred             HhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhcccc-ccCCHHHhhc------ccccCCCCCccc
Q psy4251         220 LWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVRP-VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       220 ~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      |+.+.||+||+|+||+|. ++ +....  ....+....  ... ...+|++.|.      ++.....+|+.+
T Consensus       251 el~~~gIrvn~v~PG~v~T~~-~~~~~--~~~~~~~~~--p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i  317 (328)
T 2qhx_A          251 ELAPLQIRVNGVGPGLSVLVD-DMPPA--VWEGHRSKV--PLYQRDSSAAEVSDVVIFLCSSKAKYITGTCV  317 (328)
T ss_dssp             HHGGGTEEEEEEEESSBSCCC-CSCHH--HHHHHHTTC--TTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHhhcCcEEEEEecCcccCCc-cccHH--HHHHHHhhC--CCCCCCCCHHHHHHHHHHHhCccccCccCcEE
Confidence            999999999999999999 88 33211  001111111  112 3568999987      455667788866

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=100.00  E-value=1.3e-33  Score=240.66  Aligned_cols=224  Identities=15%  Similarity=0.089  Sum_probs=179.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+++++..+++     +.++.++++|++|+++
T Consensus         2 ~~l~~k~vl-VTGas------~giG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~   66 (253)
T 1hxh_A            2 NRLQGKVAL-VTGGA------SGVGLEV---VKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEAD   66 (253)
T ss_dssp             CTTTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCceEEEEccCCCHHH
Confidence            367899999 99999      9999999   6667778877764  8888887777666     3578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.+++.++++++|.|++++   ++||++||..+..
T Consensus        67 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~  143 (253)
T 1hxh_A           67 WTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG---GSIINMASVSSWL  143 (253)
T ss_dssp             HHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC---EEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC---CEEEEEcchhhcC
Confidence            99999999999999999999999863  456778899999999999999999999999997653   8999999998776


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCC--CeEEEEecCCccc-cccccccccCCccc-h
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKY--KIALSSRHCCWKI-TVSKKWWRFGTPVR-T  252 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~--gi~v~~v~PG~v~-~~~~~~~~~~~~~~-~  252 (292)
                      +.            +       +...|++||++++.|+++++.|+.++  ||+||+|+||++. ++.+.......... +
T Consensus       144 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~  204 (253)
T 1hxh_A          144 PI------------E-------QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMV  204 (253)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHH
T ss_pred             CC------------C-------CCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHHHH
Confidence            54            2       67899999999999999999999887  8999999999999 87654211111111 1


Q ss_pred             hh---hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FS---WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~---~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..   ..  ......+|++.|.      ++.....+|+.+
T Consensus       205 ~~~~~~~--p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~  242 (253)
T 1hxh_A          205 LHDPKLN--RAGRAYMPERIAQLVLFLASDESSVMSGSEL  242 (253)
T ss_dssp             BCBTTTB--TTCCEECHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hhhhccC--ccCCCCCHHHHHHHHHHHcCccccCCCCcEE
Confidence            11   11  1112458899887      445556778766

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=1.1e-33  Score=246.54  Aligned_cols=230  Identities=15%  Similarity=0.081  Sum_probs=182.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCC---ceEEEEccCCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSA---QCIAMELDLCR   95 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~---~~~~~~~Dls~   95 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++.+.  +.   ++.++++|++|
T Consensus        22 ~~l~~k~vl-VTGas------~gIG~ai---a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~~Dv~d   89 (297)
T 1xhl_A           22 ARFSGKSVI-ITGSS------NGIGRSA---AVIFAKEGAQVTITGRNEDRLEETKQQILKA--GVPAEKINAVVADVTE   89 (297)
T ss_dssp             -CCTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCGGGEEEEECCTTS
T ss_pred             cCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEEecCCCC
Confidence            458899999 99999      9999999   566667787776  49999999888888765  33   78999999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccC--C--CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFG--L--GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~--~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      .++++++++++.++++++|+||||||+..  +  ..+.+.++|++.+++|+.+++.++++++|.|.+++   ++||++||
T Consensus        90 ~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~---g~IV~isS  166 (297)
T 1xhl_A           90 ASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK---GEIVNVSS  166 (297)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC---CEEEEEcC
Confidence            99999999999999999999999999863  3  45678899999999999999999999999997654   89999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccc--cc-C
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWW--RF-G  247 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~--~~-~  247 (292)
                      ..+..+..           +       +...|++||++++.|+++++.|+.+.||+||+|+||+|. ++.+...  .. .
T Consensus       167 ~~~~~~~~-----------~-------~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~  228 (297)
T 1xhl_A          167 IVAGPQAH-----------S-------GYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETAS  228 (297)
T ss_dssp             GGGSSSCC-----------T-------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHH
T ss_pred             chhccCCC-----------C-------CcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccc
Confidence            87765430           1       567899999999999999999999999999999999999 8865431  00 0


Q ss_pred             -Cccchhhhhhc--cccccCCHHHhhc------ccc-cCCCCCccc
Q psy4251         248 -TPVRTFSWISR--VRPVTNFQVDLTG------TAE-KVGLSGLPD  283 (292)
Q Consensus       248 -~~~~~~~~~~~--~~~~~~~~~~~a~------~~~-~~~~~G~~~  283 (292)
                       ........+..  ......+|++.|.      ++. ....+|+.+
T Consensus       229 ~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i  274 (297)
T 1xhl_A          229 DKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSI  274 (297)
T ss_dssp             HHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEE
T ss_pred             cchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCcEE
Confidence             00011111100  1123568999887      344 556788766

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=1.2e-33  Score=244.39  Aligned_cols=229  Identities=15%  Similarity=0.094  Sum_probs=181.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCC---ceEEEEccCCCh
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSA---QCIAMELDLCRL   96 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~---~~~~~~~Dls~~   96 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.  +.   ++.++++|++|.
T Consensus         3 ~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dv~~~   70 (280)
T 1xkq_A            3 RFSNKTVI-ITGSS------NGIGRTT---AILFAQEGANVTITGRSSERLEETRQIILKS--GVSEKQVNSVVADVTTE   70 (280)
T ss_dssp             TTTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TCCGGGEEEEECCTTSH
T ss_pred             CCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcceEEEEecCCCH
Confidence            47899999 99999      9999999   666777787776  48999998888888764  33   789999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--C----CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--L----GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--~----~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      ++++++++++.++++++|+||||||+..  +    ..+.+.++|++.+++|+.+++.++++++|.|.++.   ++||++|
T Consensus        71 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~is  147 (280)
T 1xkq_A           71 DGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVS  147 (280)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC---CcEEEec
Confidence            9999999999999999999999999864  2    44668889999999999999999999999997654   8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccc--cc-
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWW--RF-  246 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~--~~-  246 (292)
                      |..+..+..           +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+...  .. 
T Consensus       148 S~~~~~~~~-----------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~  209 (280)
T 1xkq_A          148 SIVAGPQAQ-----------P-------DFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQA  209 (280)
T ss_dssp             CGGGSSSCC-----------C-------SSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHH
T ss_pred             CccccCCCC-----------C-------cccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCccccccccccc
Confidence            987765430           1       567899999999999999999999999999999999999 8865431  00 


Q ss_pred             C-Cccchhhhhhc--cccccCCHHHhhc------ccc-cCCCCCccc
Q psy4251         247 G-TPVRTFSWISR--VRPVTNFQVDLTG------TAE-KVGLSGLPD  283 (292)
Q Consensus       247 ~-~~~~~~~~~~~--~~~~~~~~~~~a~------~~~-~~~~~G~~~  283 (292)
                      . ....+...+..  ......+|++.|.      ++. ....+|+.+
T Consensus       210 ~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i  256 (280)
T 1xkq_A          210 SQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSI  256 (280)
T ss_dssp             HHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEE
T ss_pred             ccchHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCcccccCccCCeE
Confidence            0 00011111100  1123568999887      344 556778765

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=100.00  E-value=8.2e-34  Score=242.58  Aligned_cols=226  Identities=15%  Similarity=0.110  Sum_probs=178.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHH--HHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDK--ANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~--~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++  +++..+++.+.  +.++.++++|++|.++++
T Consensus         2 ~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~   69 (258)
T 3a28_C            2 SKVAM-VTGGA------QGIGRGI---SEKLAADGFDIAVADLPQQEEQAAETIKLIEAA--DQKAVFVGLDVTDKANFD   69 (258)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT--TCCEEEEECCTTCHHHHH
T ss_pred             CCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHH
Confidence            68888 99999      9999999   555667777765  477666  77777777654  568999999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYS  177 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~  177 (292)
                      ++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.++++++++++|.|.+++ +  ++||++||..+..+
T Consensus        70 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~  147 (258)
T 3a28_C           70 SAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVK--GKIINAASIAAIQG  147 (258)
T ss_dssp             HHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--CEEEEECCGGGTSC
T ss_pred             HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCC--cEEEEECcchhccC
Confidence            999999999999999999999863  445678899999999999999999999999997654 3  79999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc------cCCcc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR------FGTPV  250 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~------~~~~~  250 (292)
                      .            +       +...|++||++++.|+++++.|+.++||+||+|+||+|+ ++.+....      .....
T Consensus       148 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~  208 (258)
T 3a28_C          148 F------------P-------ILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIG  208 (258)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTT
T ss_pred             C------------C-------CchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchH
Confidence            4            2       678999999999999999999999999999999999999 87654210      00001


Q ss_pred             chhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....+..  ......+|++.|.      ++.....+|+.+
T Consensus       209 ~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i  249 (258)
T 3a28_C          209 ENFKEYSSSIALGRPSVPEDVAGLVSFLASENSNYVTGQVM  249 (258)
T ss_dssp             HHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHHhcCCCCCccCHHHHHHHHHHHhCcccCCCCCCEE
Confidence            11111111  1122568999887      455556788765

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=100.00  E-value=1.5e-33  Score=241.61  Aligned_cols=227  Identities=15%  Similarity=0.041  Sum_probs=174.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++.+|+++ ||||+      +|||+++   +.+|++.|+.|+.  |+ .+..+...+.+.+.  +.++.++++|++|.++
T Consensus         4 ~~~~k~vl-VTGas------~gIG~~~---a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~   71 (264)
T 3i4f_A            4 GRFVRHAL-ITAGT------KGLGKQV---TEKLLAKGYSVTVTYHSDTTAMETMKETYKDV--EERLQFVQADVTKKED   71 (264)
T ss_dssp             --CCCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHTGGG--GGGEEEEECCTTSHHH
T ss_pred             ccccCEEE-EeCCC------chhHHHH---HHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc--CCceEEEEecCCCHHH
Confidence            45688999 99999      9999999   6667778877763  44 44455555444433  4689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc----CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++.++++++|+||||||+.    .+..+.+.++|++.+++|+.+++.++++++|.|.+++.  ++||++||..+
T Consensus        72 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--g~iv~iss~~~  149 (264)
T 3i4f_A           72 LHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNF--GRIINYGFQGA  149 (264)
T ss_dssp             HHHHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCTTG
T ss_pred             HHHHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC--CeEEEEeechh
Confidence            9999999999999999999999943    24566788999999999999999999999999988877  99999999743


Q ss_pred             c-cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         175 R-YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       175 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      . ...                  +.+...|++||++++.|+++++.++.++||+||+|+||+|. ++.+..... ....+
T Consensus       150 ~~~~~------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~~~  210 (264)
T 3i4f_A          150 DSAPG------------------WIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATIQE-ARQLK  210 (264)
T ss_dssp             GGCCC------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCHHH-HHHC-
T ss_pred             cccCC------------------CCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhccHH-HHHHH
Confidence            3 221                  12568999999999999999999999999999999999999 887664321 00011


Q ss_pred             hhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....  ......+|++.|+      ++.....+|+.+
T Consensus       211 ~~~~--p~~r~~~~~dva~~v~~l~s~~~~~itG~~i  245 (264)
T 3i4f_A          211 EHNT--PIGRSGTGEDIARTISFLCEDDSDMITGTII  245 (264)
T ss_dssp             ---------CCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hhcC--CCCCCcCHHHHHHHHHHHcCcccCCCCCcEE
Confidence            1111  1122458898887      455566788866

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=100.00  E-value=2.6e-33  Score=246.66  Aligned_cols=192  Identities=19%  Similarity=0.153  Sum_probs=166.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+  +|+.++++++.+++....++.++.++++|++|.++
T Consensus         4 ~~l~~k~vl-VTGas------~gIG~~l---a~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~   73 (319)
T 3ioy_A            4 KDFAGRTAF-VTGGA------NGVGIGL---VRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREG   73 (319)
T ss_dssp             CCCTTCEEE-EETTT------STHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EcCCc------hHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHH
Confidence            467899999 99999      9999999   666777787776  49999999999999877544589999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc------CCCCcEEEEEc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARVVVVS  170 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~------~~~~~~iV~vs  170 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++++..+++|+.|+++++++++|.|.++      ..  ++||++|
T Consensus        74 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~--g~iV~is  151 (319)
T 3ioy_A           74 FKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKG--GHVVNTA  151 (319)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCC--CEEEEEC
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCC--cEEEEec
Confidence            99999999999999999999999863  55677889999999999999999999999999764      34  8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      |.++..+.            +       +...|++||+++.+|+++++.++.+.||+|++|+||+|. ++....
T Consensus       152 S~a~~~~~------------~-------~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~  206 (319)
T 3ioy_A          152 SMAAFLAA------------G-------SPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASD  206 (319)
T ss_dssp             CGGGTCCC------------S-------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-------
T ss_pred             ccccccCC------------C-------CCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCccccc
Confidence            99888765            3       678999999999999999999999899999999999999 887653

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=100.00  E-value=5.5e-33  Score=237.74  Aligned_cols=229  Identities=15%  Similarity=0.119  Sum_probs=177.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++.+.  +.++.++++|++|.+++
T Consensus         2 ~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v   69 (260)
T 2qq5_A            2 PMNGQVCV-VTGAS------RGIGRGI---ALQLCKAGATVYITGRHLDTLRVVAQEAQSL--GGQCVPVVCDSSQESEV   69 (260)
T ss_dssp             TTTTCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--SSEEEEEECCTTSHHHH
T ss_pred             CCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--CCceEEEECCCCCHHHH
Confidence            46799999 99999      9999999   666777787776  48999998888888766  56899999999999999


Q ss_pred             HHHHHHHHHh-CCCccEEEEccc--cc-------CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy4251         100 KKFAEEYQKK-FRSLNILVLNAG--VF-------GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV  169 (292)
Q Consensus       100 ~~~~~~~~~~-~~~id~lI~nAg--~~-------~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v  169 (292)
                      +++++++.++ ++++|+||||||  +.       .+..+.+.++|+..+++|+.+++++++.++|.|.+++.  ++||++
T Consensus        70 ~~~~~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--g~iv~i  147 (260)
T 2qq5_A           70 RSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQ--GLIVVI  147 (260)
T ss_dssp             HHHHHHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTC--CEEEEE
T ss_pred             HHHHHHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCC--cEEEEE
Confidence            9999999886 899999999994  42       34567788999999999999999999999999987767  999999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-  247 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-  247 (292)
                      ||..+..+.                    +...|++||++++.|+++++.|+.+.||+||+|+||+|+ ++.+...... 
T Consensus       148 sS~~~~~~~--------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~  207 (260)
T 2qq5_A          148 SSPGSLQYM--------------------FNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEE  207 (260)
T ss_dssp             CCGGGTSCC--------------------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC--------
T ss_pred             cChhhcCCC--------------------CCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhcccc
Confidence            998776532                    457899999999999999999999999999999999999 8876532110 


Q ss_pred             Cc-cchhhhhhccccccCCHHHhhc------cccc-CCCCCcccc
Q psy4251         248 TP-VRTFSWISRVRPVTNFQVDLTG------TAEK-VGLSGLPDS  284 (292)
Q Consensus       248 ~~-~~~~~~~~~~~~~~~~~~~~a~------~~~~-~~~~G~~~~  284 (292)
                      .. ...............+|++.|.      ++.. ...+|+++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~pe~va~~v~~l~s~~~~~~itG~~i~  252 (260)
T 2qq5_A          208 VLQDPVLKQFKSAFSSAETTELSGKCVVALATDPNILSLSGKVLP  252 (260)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHTCTTGGGGTTCEEE
T ss_pred             ccchhHHHHHHhhhccCCCHHHHHHHHHHHhcCcccccccceeec
Confidence            00 0111101000112357888886      3332 356888774

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=100.00  E-value=2e-33  Score=238.82  Aligned_cols=225  Identities=15%  Similarity=0.108  Sum_probs=166.4

Q ss_pred             CCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccC
Q psy4251          16 LLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDL   93 (292)
Q Consensus        16 ~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl   93 (292)
                      ++.+..++++|+++ ||||+      +|||+++   +..|++.|+.|+  .|+.+++++..+++     ..++.++.+|+
T Consensus         5 ~~~~~~~~~~k~vl-VTGas------~gIG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~   69 (249)
T 3f9i_A            5 HHHHMIDLTGKTSL-ITGAS------SGIGSAI---ARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNL   69 (249)
T ss_dssp             ----CCCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCT
T ss_pred             CccccccCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCC
Confidence            44556789999999 99999      9999999   566777787766  48988888877766     34788999999


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      ++.++++++++++    +++|+||||||+..  +..+.+.++|+..+++|+.+++.++++++|.|.++..  ++||++||
T Consensus        70 ~~~~~~~~~~~~~----~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--g~iv~isS  143 (249)
T 3f9i_A           70 ANKEECSNLISKT----SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRY--GRIINISS  143 (249)
T ss_dssp             TSHHHHHHHHHTC----SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECC
T ss_pred             CCHHHHHHHHHhc----CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cEEEEEcc
Confidence            9999988887653    78999999999874  3456788999999999999999999999999988777  99999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV  250 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~  250 (292)
                      ..+..+.            +       +...|++||++++.|+++++.++.++||+||+|+||+|. ++.+..... ...
T Consensus       144 ~~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~  203 (249)
T 3f9i_A          144 IVGIAGN------------P-------GQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEK-QRE  203 (249)
T ss_dssp             CCC--CC------------S-------CSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCHH-HHH
T ss_pred             HHhccCC------------C-------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCHH-HHH
Confidence            9887665            3       678999999999999999999999999999999999999 887664321 111


Q ss_pred             chhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+....  ......++++.|.      ++.....+|+.+
T Consensus       204 ~~~~~~--~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~  240 (249)
T 3f9i_A          204 AIVQKI--PLGTYGIPEDVAYAVAFLASNNASYITGQTL  240 (249)
T ss_dssp             HHHHHC--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHhcC--CCCCCcCHHHHHHHHHHHcCCccCCccCcEE
Confidence            111111  2223567888887      455566788866

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=100.00  E-value=1e-33  Score=242.02  Aligned_cols=230  Identities=13%  Similarity=0.054  Sum_probs=180.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhh---cCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQ---SSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~---~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++   .|+.|+  .|+.++++++.+++.+..++.++.++++|++|
T Consensus         2 ~~l~~k~~l-VTGas------~gIG~~i---a~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~   71 (259)
T 1oaa_A            2 DGLGCAVCV-LTGAS------RGFGRAL---APQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             CCCBSEEEE-ESSCS------SHHHHHH---HHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCCCCcEEE-EeCCC------ChHHHHH---HHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            357899999 99999      9999999   555666   787776  49999999999999876556789999999999


Q ss_pred             hHHHHHHHHHHHH--hCCCcc--EEEEcccccC----CCCC-CCCcchhhhhhhhhhHHHHHHHHHHHHHHhc--CCCCc
Q psy4251          96 LKSVKKFAEEYQK--KFRSLN--ILVLNAGVFG----LGFS-HTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFA  164 (292)
Q Consensus        96 ~~~v~~~~~~~~~--~~~~id--~lI~nAg~~~----~~~~-~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~--~~~~~  164 (292)
                      +++++++++++.+  .++++|  +||||||+..    +..+ .+.++|+..+++|+.|+++++++++|.|.++  ..  +
T Consensus        72 ~~~v~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~--g  149 (259)
T 1oaa_A           72 EAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLS--K  149 (259)
T ss_dssp             HHHHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCE--E
T ss_pred             HHHHHHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--c
Confidence            9999999999988  678898  9999999863    2344 5788999999999999999999999999776  45  8


Q ss_pred             EEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         165 RVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       165 ~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      +||++||..+..+.            +       +...|++||++++.|+++++.|+++  |+||+|+||+|+ ++.+..
T Consensus       150 ~iv~isS~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~--i~vn~v~PG~v~T~~~~~~  208 (259)
T 1oaa_A          150 TVVNISSLCALQPY------------K-------GWGLYCAGKAARDMLYQVLAAEEPS--VRVLSYAPGPLDNDMQQLA  208 (259)
T ss_dssp             EEEEECCGGGTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHCTT--EEEEEEECCSBSSHHHHHH
T ss_pred             eEEEEcCchhcCCC------------C-------CccHHHHHHHHHHHHHHHHHhhCCC--ceEEEecCCCcCcchHHHH
Confidence            99999999887654            2       6789999999999999999999974  999999999999 886653


Q ss_pred             cccCCccchhhhhhc--cccccCCHHHhhc-----ccccCCCCCccc
Q psy4251         244 WRFGTPVRTFSWISR--VRPVTNFQVDLTG-----TAEKVGLSGLPD  283 (292)
Q Consensus       244 ~~~~~~~~~~~~~~~--~~~~~~~~~~~a~-----~~~~~~~~G~~~  283 (292)
                      ............+..  ......+|++.|.     .......+|+.+
T Consensus       209 ~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~~~~~~itG~~i  255 (259)
T 1oaa_A          209 RETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKDTFQSGAHV  255 (259)
T ss_dssp             HHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHHCCSCTTEEE
T ss_pred             hhccCChhHHHHHHHhhhcCCcCCHHHHHHHHHHHHhhccccCCcEE
Confidence            210000011111100  1233578999987     112345567654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=100.00  E-value=1.1e-33  Score=242.81  Aligned_cols=226  Identities=9%  Similarity=0.001  Sum_probs=179.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCccc--chhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTG--LKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~G--iG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      .+++||+++ ||||+      ++  ||+++   +.+|++.|+.|+.  |+. +..+..+++.+..+..++.++++|++|.
T Consensus         3 ~~l~~k~vl-VTGas------g~~GIG~~i---a~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~   71 (266)
T 3oig_A            3 FSLEGRNIV-VMGVA------NKRSIAWGI---ARSLHEAGARLIFTYAGE-RLEKSVHELAGTLDRNDSIILPCDVTND   71 (266)
T ss_dssp             SCCTTCEEE-EECCC------STTSHHHHH---HHHHHHTTCEEEEEESSG-GGHHHHHHHHHTSSSCCCEEEECCCSSS
T ss_pred             cccCCCEEE-EEcCC------CCCcHHHHH---HHHHHHCCCEEEEecCch-HHHHHHHHHHHhcCCCCceEEeCCCCCH
Confidence            468899999 99998      66  99999   6667778887764  664 3334455555555445899999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      ++++++++++.++++++|+||||||+..      +..+.+.++|+..+++|+.+++.++++++|.|++  .  ++||++|
T Consensus        72 ~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~--g~iv~is  147 (266)
T 3oig_A           72 AEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE--G--GSIVTLT  147 (266)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--C--EEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC--C--ceEEEEe
Confidence            9999999999999999999999999863      3456788999999999999999999999999864  3  8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       +...|++||++++.|++++++|+.++||+||+|+||+|. ++.+.....   
T Consensus       148 S~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~---  205 (266)
T 3oig_A          148 YLGGELVM------------P-------NYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDF---  205 (266)
T ss_dssp             CGGGTSCC------------T-------TTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTH---
T ss_pred             cccccccC------------C-------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccch---
Confidence            99887765            3       678999999999999999999999999999999999999 887664321   


Q ss_pred             cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ......+..  ......+|++.|+      ++.....+|+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~p~dva~~v~~l~s~~~~~~tG~~i  247 (266)
T 3oig_A          206 NSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENL  247 (266)
T ss_dssp             HHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCchhcCcCCEE
Confidence            111111111  1223568999987      455566788866

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=100.00  E-value=4.7e-33  Score=238.18  Aligned_cols=218  Identities=16%  Similarity=0.137  Sum_probs=177.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.     .++.++++|++|.+++
T Consensus         4 ~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v   68 (260)
T 1nff_A            4 RLTGKVAL-VSGGA------RGMGASH---VRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQW   68 (260)
T ss_dssp             TTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----cCceEEEecCCCHHHH
Confidence            57899999 99999      9999999   666777887776  488888877766653     2588899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|++++.  ++||++||..+..+
T Consensus        69 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~  146 (260)
T 1nff_A           69 KAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGR--GSIINISSIEGLAG  146 (260)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CEEEEEeehhhcCC
Confidence            9999999999999999999999863  4567788999999999999999999999999988766  99999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|++||++++.++++++.++.+.||+||+|+||+|. ++.+ ....    .+. ..
T Consensus       147 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-~~~~----~~~-~~  201 (260)
T 1nff_A          147 T------------V-------ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-WVPE----DIF-QT  201 (260)
T ss_dssp             C------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-TSCT----TCS-CC
T ss_pred             C------------C-------CchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc-cchh----hHH-hC
Confidence            4            2       667999999999999999999999889999999999999 8764 2111    111 11


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ......+|++.|.      ++.....+|+.+
T Consensus       202 --~~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~  232 (260)
T 1nff_A          202 --ALGRAAEPVEVSNLVVYLASDESSYSTGAEF  232 (260)
T ss_dssp             --SSSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             --ccCCCCCHHHHHHHHHHHhCccccCCcCCEE
Confidence              1123468888887      344455667655

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=100.00  E-value=5.1e-33  Score=234.30  Aligned_cols=223  Identities=13%  Similarity=0.068  Sum_probs=178.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++|+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.. +.++.++++|++|++++++
T Consensus         1 ~~k~vl-ITGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~   69 (235)
T 3l77_A            1 EMKVAV-ITGAS------RGIGEAI---ARALARDGYALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEE   69 (235)
T ss_dssp             CCCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHH
Confidence            478888 99999      9999999   566667787765  499999999998887443 5689999999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++.++++++|+||||||+..  +..+.+.++|+..+++|+.|+++++++++|.|.++ .  +++|+++|..+..+. 
T Consensus        70 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~--~~ii~~sS~~~~~~~-  145 (235)
T 3l77_A           70 FSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRT-G--GLALVTTSDVSARLI-  145 (235)
T ss_dssp             HCC-HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T--CEEEEECCGGGSSCC-
T ss_pred             HHHHHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C--CcEEEEecchhcccC-
Confidence            99999999999999999999863  45677999999999999999999999999999544 4  899999998776654 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISR  258 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~  258 (292)
                                 +       ....|++||+++..|+++++.+  ..||+||+|+||+|+ ++.+......   ..      
T Consensus       146 -----------~-------~~~~Y~~sKaa~~~~~~~l~~~--~~~i~v~~v~PG~v~T~~~~~~~~~~---~~------  196 (235)
T 3l77_A          146 -----------P-------YGGGYVSTKWAARALVRTFQIE--NPDVRFFELRPGAVDTYFGGSKPGKP---KE------  196 (235)
T ss_dssp             -----------T-------TCHHHHHHHHHHHHHHHHHHHH--CTTSEEEEEEECSBSSSTTTCCSCCC---GG------
T ss_pred             -----------C-------CcchHHHHHHHHHHHHHHHhhc--CCCeEEEEEeCCccccccccccCCcc---cc------
Confidence                       2       5678999999999999999444  568999999999999 8877653320   00      


Q ss_pred             cccccCCHHHhhc------ccccCCCCCcc-ccCCccccCC
Q psy4251         259 VRPVTNFQVDLTG------TAEKVGLSGLP-DSEWMWHYQY  292 (292)
Q Consensus       259 ~~~~~~~~~~~a~------~~~~~~~~G~~-~~~~~w~~~~  292 (292)
                        ....+|++.|+      +......+|+. +.+..+..+|
T Consensus       197 --~~~~~p~dva~~v~~l~~~~~~~~~~~~~~~~~~~~~~~  235 (235)
T 3l77_A          197 --KGYLKPDEIAEAVRCLLKLPKDVRVEELMLRSVYQRPEY  235 (235)
T ss_dssp             --GTCBCHHHHHHHHHHHHTSCTTCCCCEEEECCTTSCCCC
T ss_pred             --cCCCCHHHHHHHHHHHHcCCCCCccceEEEeecccCCCC
Confidence              12358899887      44444556664 4566666655

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=9.9e-34  Score=242.78  Aligned_cols=220  Identities=15%  Similarity=0.127  Sum_probs=174.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     ..++.++++|++|.+++
T Consensus         3 ~l~~k~vl-ITGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v   67 (263)
T 2a4k_A            3 RLSGKTIL-VTGAA------SGIGRAA---LDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAV   67 (263)
T ss_dssp             TTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHH
T ss_pred             CCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHH
Confidence            47899999 99999      9999999   666777787776  48888777766544     24788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.| ++ .  ++||++||..+. +
T Consensus        68 ~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~-~--g~iv~isS~~~~-~  142 (263)
T 2a4k_A           68 EAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE-G--GSLVLTGSVAGL-G  142 (263)
T ss_dssp             HHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT-T--CEEEEECCCTTC-C
T ss_pred             HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc-C--CEEEEEecchhc-C
Confidence            9999999999999999999999864  45677889999999999999999999999999 54 5  999999999877 4


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|++||+++..|+++++.|+.++||+||+|+||+|. ++.+..... ....+....
T Consensus       143 ~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~~~~~~~  202 (263)
T 2a4k_A          143 A------------F-------GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPW-AWEQEVGAS  202 (263)
T ss_dssp             H------------H-------HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHH-HHHHHHHTS
T ss_pred             C------------C-------CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcCHH-HHHHHHhcC
Confidence            3            2       678999999999999999999999999999999999999 887653210 000111111


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ......+|++.|.      ++.....+|+.+
T Consensus       203 --p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i  233 (263)
T 2a4k_A          203 --PLGRAGRPEEVAQAALFLLSEESAYITGQAL  233 (263)
T ss_dssp             --TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             --CCCCCcCHHHHHHHHHHHhCccccCCcCCEE
Confidence              1123568999887      444556778765

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=100.00  E-value=1.3e-33  Score=242.32  Aligned_cols=231  Identities=14%  Similarity=0.140  Sum_probs=181.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH-HHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD-KANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ ||||+    ..+|||+++   +.+|++.|+.|+.  |+.+ ..++..+++.+.. +.++.++++|++|.+
T Consensus        16 ~~l~~k~vl-ITGas----~~~giG~~~---a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~   86 (267)
T 3gdg_A           16 LSLKGKVVV-VTGAS----GPKGMGIEA---ARGCAEMGAAVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYE   86 (267)
T ss_dssp             HCCTTCEEE-ETTCC----SSSSHHHHH---HHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHH
T ss_pred             cCcCCCEEE-EECCC----CCCChHHHH---HHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHH
Confidence            468999999 99986    003999999   6667788888764  4433 3366677776544 568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.+++++||+||||||+..  +..+.+.++|+..+++|+.++++++++++|.|.+++.  ++||++||..+.
T Consensus        87 ~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~  164 (267)
T 3gdg_A           87 SCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGT--GSLVITASMSGH  164 (267)
T ss_dssp             HHHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCC--ceEEEEcccccc
Confidence            999999999999999999999999874  4567789999999999999999999999999988777  999999998877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+..+          +       +...|++||++++.|++++++++.+. |+||+|+||+|+ ++.+..... ....+..
T Consensus       165 ~~~~~----------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~-i~v~~v~PG~v~t~~~~~~~~~-~~~~~~~  225 (267)
T 3gdg_A          165 IANFP----------Q-------EQTSYNVAKAGCIHMARSLANEWRDF-ARVNSISPGYIDTGLSDFVPKE-TQQLWHS  225 (267)
T ss_dssp             SCCSS----------S-------CCHHHHHHHHHHHHHHHHHHHHTTTT-CEEEEEEECCEECSCGGGSCHH-HHHHHHT
T ss_pred             ccCCC----------C-------CCCcchHHHHHHHHHHHHHHHHhccC-cEEEEEECCccccchhhhCCHH-HHHHHHh
Confidence            65310          1       56789999999999999999999887 999999999999 887654321 0111111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|.      ++.....+|+.+
T Consensus       226 ~~--~~~r~~~~~dva~~~~~l~s~~~~~itG~~i  258 (267)
T 3gdg_A          226 MI--PMGRDGLAKELKGAYVYFASDASTYTTGADL  258 (267)
T ss_dssp             TS--TTSSCEETHHHHHHHHHHHSTTCTTCCSCEE
T ss_pred             cC--CCCCCcCHHHHHhHhheeecCccccccCCEE
Confidence            11  1122456888877      555667788865

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=100.00  E-value=4.2e-33  Score=237.94  Aligned_cols=221  Identities=15%  Similarity=0.060  Sum_probs=174.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++ ++..+++.      + .++++|++|.+++
T Consensus         3 ~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~-~~~~~~~~------~-~~~~~D~~~~~~~   64 (256)
T 2d1y_A            3 LFAGKGVL-VTGGA------RGIGRAI---AQAFAREGALVALCDLRPEG-KEVAEAIG------G-AFFQVDLEDERER   64 (256)
T ss_dssp             TTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSTTH-HHHHHHHT------C-EEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCChhH-HHHHHHhh------C-CEEEeeCCCHHHH
Confidence            47899999 99999      9999999   666777887776  477666 55555542      4 7889999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|++++.  ++||++||..+..+
T Consensus        65 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~--g~iv~isS~~~~~~  142 (256)
T 2d1y_A           65 VRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGG--GAIVNVASVQGLFA  142 (256)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTSB
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEEccccccCC
Confidence            9999999999999999999999863  4567788899999999999999999999999988777  99999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc----c-ccCCccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW----W-RFGTPVR  251 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~----~-~~~~~~~  251 (292)
                      .            +       +...|++||++++.|+++++.++.+.||+||+|+||++. ++....    . .......
T Consensus       143 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~  203 (256)
T 2d1y_A          143 E------------Q-------ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRD  203 (256)
T ss_dssp             C------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHH
T ss_pred             C------------C-------CChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHH
Confidence            4            2       678999999999999999999999899999999999999 876542    1 1101111


Q ss_pred             hhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +....  ......+|++.|.      ++.....+|+.+
T Consensus       204 ~~~~~--~~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~  239 (256)
T 2d1y_A          204 WEDLH--ALRRLGKPEEVAEAVLFLASEKASFITGAIL  239 (256)
T ss_dssp             HHTTS--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHhcC--CCCCCcCHHHHHHHHHHHhCchhcCCCCCEE
Confidence            11111  1123568999887      444455677755

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=100.00  E-value=2e-33  Score=239.77  Aligned_cols=186  Identities=16%  Similarity=0.135  Sum_probs=160.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+  ++..+++.+.  +.++.++++|++|.+++
T Consensus         1 ~l~~k~vl-VTGas------~giG~~i---a~~l~~~G~~V~~~~r~~~--~~~~~~l~~~--~~~~~~~~~D~~~~~~v   66 (255)
T 2q2v_A            1 TLKGKTAL-VTGST------SGIGLGI---AQVLARAGANIVLNGFGDP--APALAEIARH--GVKAVHHPADLSDVAQI   66 (255)
T ss_dssp             CCTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEECSSCC--HHHHHHHHTT--SCCEEEECCCTTSHHHH
T ss_pred             CCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCch--HHHHHHHHhc--CCceEEEeCCCCCHHHH
Confidence            36789999 99999      9999999   6667778888764  5544  4555666544  45788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.+++.  ++||++||..+..+
T Consensus        67 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~  144 (255)
T 2q2v_A           67 EALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNW--GRIINIASVHGLVG  144 (255)
T ss_dssp             HHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEEcCchhccC
Confidence            9999999999999999999999863  3456788999999999999999999999999988777  99999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .            +       +...|++||+++..|+++++.|+.++||+||+|+||+|. ++.+.
T Consensus       145 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~  191 (255)
T 2q2v_A          145 S------------T-------GKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQK  191 (255)
T ss_dssp             C------------T-------TBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHH
T ss_pred             C------------C-------CchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhh
Confidence            4            2       678999999999999999999999999999999999999 87654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=100.00  E-value=1.7e-33  Score=241.96  Aligned_cols=230  Identities=11%  Similarity=0.017  Sum_probs=175.9

Q ss_pred             CCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          17 LHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        17 ~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      +.+..++++|+++ ||||+    .++|||+++   +.+|+++|+.|+.  |+ ++..+..+++.+..  .++.+++||++
T Consensus         6 ~~~~~~~~~k~vl-ITGa~----~~~giG~~i---a~~l~~~G~~V~~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dv~   74 (271)
T 3ek2_A            6 HHHMGFLDGKRIL-LTGLL----SNRSIAYGI---AKACKREGAELAFTYVG-DRFKDRITEFAAEF--GSELVFPCDVA   74 (271)
T ss_dssp             ---CCTTTTCEEE-ECCCC----STTSHHHHH---HHHHHHTTCEEEEEESS-GGGHHHHHHHHHHT--TCCCEEECCTT
T ss_pred             CCCccccCCCEEE-EeCCC----CCCcHHHHH---HHHHHHcCCCEEEEecc-hhhHHHHHHHHHHc--CCcEEEECCCC
Confidence            3456788999999 99952    016999999   6667778877763  66 33445555665553  35889999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC------CCCC-CCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEE
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFS-HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVV  167 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~-~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV  167 (292)
                      |.++++++++++.+++++||+||||||+..      +..+ .+.++|+..+++|+.++++++++++|.|.+  .  ++||
T Consensus        75 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~--g~iv  150 (271)
T 3ek2_A           75 DDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSD--D--ASLL  150 (271)
T ss_dssp             CHHHHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEE--E--EEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhcc--C--ceEE
Confidence            999999999999999999999999999863      3344 788999999999999999999999999874  3  8999


Q ss_pred             EEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc
Q psy4251         168 VVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF  246 (292)
Q Consensus       168 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~  246 (292)
                      ++||.++..+.            +       +...|++||+++..|+++++.++.++||+||+|+||+|. ++.+.....
T Consensus       151 ~isS~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~  211 (271)
T 3ek2_A          151 TLSYLGAERAI------------P-------NYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSF  211 (271)
T ss_dssp             EEECGGGTSBC------------T-------TTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHH
T ss_pred             EEeccccccCC------------C-------CccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccch
Confidence            99999887665            3       678999999999999999999999999999999999999 887764321


Q ss_pred             CCccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         247 GTPVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       247 ~~~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                         .........  ......+|++.|+      ++.....+|+.+
T Consensus       212 ---~~~~~~~~~~~~~~~~~~pedva~~i~~l~s~~~~~~tG~~i  253 (271)
T 3ek2_A          212 ---GKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVM  253 (271)
T ss_dssp             ---HHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSEEE
T ss_pred             ---HHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcccCCeeeeEE
Confidence               011111111  2223568999987      555667788866

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=100.00  E-value=1.8e-33  Score=239.76  Aligned_cols=220  Identities=15%  Similarity=0.134  Sum_probs=165.1

Q ss_pred             CCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          17 LHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        17 ~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      |.+..++++|+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+++             ..+.++++|++
T Consensus        13 ~~~~~~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~Dl~   69 (253)
T 2nm0_A           13 GLVPRSHMSRSVL-VTGGN------RGIGLAI---ARAFADAGDKVAITYRSGEPP-------------EGFLAVKCDIT   69 (253)
T ss_dssp             -------CCCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSSCCC-------------TTSEEEECCTT
T ss_pred             CCCccCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCChHhh-------------ccceEEEecCC
Confidence            3445678899999 99999      9999999   6667778887764  654321             13788999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      |+++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.+++.++++++|.|.+++.  ++||++||.
T Consensus        70 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~--g~iv~isS~  147 (253)
T 2nm0_A           70 DTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKK--GRVVLISSV  147 (253)
T ss_dssp             SHHHHHHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEEEECch
Confidence            999999999999999999999999999863  4567789999999999999999999999999987766  999999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      .+..+.            +       +...|++||++++.|+++++.|+.+.||+||+|+||+|+ ++.+..... ....
T Consensus       148 ~~~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~-~~~~  207 (253)
T 2nm0_A          148 VGLLGS------------A-------GQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTDE-QRAN  207 (253)
T ss_dssp             CCCCCH------------H-------HHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC----------CHHH
T ss_pred             hhCCCC------------C-------CcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCHH-HHHH
Confidence            776543            2       678999999999999999999999999999999999999 886643211 1111


Q ss_pred             hhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +....  ......+|++.|.      ++.....+|+.+
T Consensus       208 ~~~~~--p~~~~~~p~dvA~~i~~l~s~~~~~~tG~~i  243 (253)
T 2nm0_A          208 IVSQV--PLGRYARPEEIAATVRFLASDDASYITGAVI  243 (253)
T ss_dssp             HHTTC--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHhcC--CCCCCcCHHHHHHHHHHHhCccccCCcCcEE
Confidence            11111  1123568999887      445556778765

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=100.00  E-value=7.2e-34  Score=242.81  Aligned_cols=221  Identities=12%  Similarity=0.028  Sum_probs=165.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++   ..+++     +.++.++++|++|.++
T Consensus         5 m~l~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~---~~~~~-----~~~~~~~~~D~~~~~~   66 (257)
T 3tl3_A            5 MEIRDAVAV-VTGGA------SGLGLAT---TKRLLDAGAQVVVLDIRGED---VVADL-----GDRARFAAADVTDEAA   66 (257)
T ss_dssp             -----CEEE-EETTT------SHHHHHH---HHHHHHHTCEEEEEESSCHH---HHHHT-----CTTEEEEECCTTCHHH
T ss_pred             ceecCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCchHH---HHHhc-----CCceEEEECCCCCHHH
Confidence            568899999 99999      9999999   6667777877764  54322   22222     4689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh--------cCCCCc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK--------GAKLFA  164 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~--------~~~~~~  164 (292)
                      ++++++.+.+ ++++|+||||||+..      +..+.+.++|++.+++|+.++++++++++|.|.+        +..  +
T Consensus        67 v~~~~~~~~~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~--g  143 (257)
T 3tl3_A           67 VASALDLAET-MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEER--G  143 (257)
T ss_dssp             HHHHHHHHHH-HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCS--E
T ss_pred             HHHHHHHHHH-hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCC--c
Confidence            9999998877 899999999999863      1234788999999999999999999999999987        345  8


Q ss_pred             EEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         165 RVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       165 ~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      +||++||..+..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|+ ++.+..
T Consensus       144 ~iv~isS~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~  204 (257)
T 3tl3_A          144 VIINTASVAAFDGQ------------I-------GQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASL  204 (257)
T ss_dssp             EEEEECCCC--CCH------------H-------HHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---
T ss_pred             EEEEEcchhhcCCC------------C-------CCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhc
Confidence            99999999887654            2       678999999999999999999999999999999999999 888764


Q ss_pred             cccCCccchhhhhhccccccCCHHHhhc----ccccCCCCCccc
Q psy4251         244 WRFGTPVRTFSWISRVRPVTNFQVDLTG----TAEKVGLSGLPD  283 (292)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~~~~G~~~  283 (292)
                      ... ....+.... .......+|++.|.    .-.....+|+.+
T Consensus       205 ~~~-~~~~~~~~~-~~~~r~~~p~dva~~v~~l~s~~~itG~~i  246 (257)
T 3tl3_A          205 PEE-ARASLGKQV-PHPSRLGNPDEYGALAVHIIENPMLNGEVI  246 (257)
T ss_dssp             CHH-HHHHHHHTS-SSSCSCBCHHHHHHHHHHHHHCTTCCSCEE
T ss_pred             cHH-HHHHHHhcC-CCCCCccCHHHHHHHHHHHhcCCCCCCCEE
Confidence            321 011111111 01134568999987    112256678755

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=100.00  E-value=2e-33  Score=239.53  Aligned_cols=227  Identities=19%  Similarity=0.176  Sum_probs=183.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..++||+++ ||||+      +|||+++   +.+|++.|+.|+.   |+.+++++..+++.+.  +.++.++++|+++.+
T Consensus         3 ~~l~~k~vl-ITGas------~gIG~~~---a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   70 (255)
T 3icc_A            3 SMLKGKVAL-VTGAS------RGIGRAI---AKRLANDGALVAIHYGNRKEEAEETVYEIQSN--GGSAFSIGANLESLH   70 (255)
T ss_dssp             CTTTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCSHHHHHHHHHHHHT--TCEEEEEECCTTSHH
T ss_pred             CccCCCEEE-EECCC------ChHHHHH---HHHHHHCCCeEEEEeCCchHHHHHHHHHHHhc--CCceEEEecCcCCHH
Confidence            357899999 99999      9999999   6667778877653   6788888888888776  568999999999999


Q ss_pred             HHHHHHHHHHHhCC------CccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy4251          98 SVKKFAEEYQKKFR------SLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV  169 (292)
Q Consensus        98 ~v~~~~~~~~~~~~------~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v  169 (292)
                      +++++++++.++++      ++|+||||||+..  +..+.+.++|++.+++|+.++++++++++|.|.+  .  ++||++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~--~~iv~i  146 (255)
T 3icc_A           71 GVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD--N--SRIINI  146 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--E--EEEEEE
T ss_pred             HHHHHHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCC--C--CEEEEe
Confidence            99999999987764      4999999999863  3456788999999999999999999999999843  3  899999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT  248 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~  248 (292)
                      ||..+..+.            +       ....|++||++++.|++++++++.++||+||+|+||+|+ ++.+.......
T Consensus       147 sS~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~  207 (255)
T 3icc_A          147 SSAATRISL------------P-------DFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPM  207 (255)
T ss_dssp             CCGGGTSCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHH
T ss_pred             CChhhccCC------------C-------CcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHH
Confidence            999887765            3       678999999999999999999999999999999999999 98876533210


Q ss_pred             ccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 PVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ........ .......+|++.|.      ++.....+|+.+
T Consensus       208 ~~~~~~~~-~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i  247 (255)
T 3icc_A          208 MKQYATTI-SAFNRLGEVEDIADTAAFLASPDSRWVTGQLI  247 (255)
T ss_dssp             HHHHHHHT-STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHhhhcc-CCcCCCCCHHHHHHHHHHHhCcccCCccCCEE
Confidence            01111111 01123468999887      566677888876

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=100.00  E-value=1.4e-32  Score=238.28  Aligned_cols=228  Identities=16%  Similarity=0.153  Sum_probs=181.4

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +..|++.|+.|++  |+.+++++..+++.+.  +.++.++++|++|.+
T Consensus        39 ~~~l~~k~vl-ITGas------ggIG~~l---a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~  106 (285)
T 2c07_A           39 YYCGENKVAL-VTGAG------RGIGREI---AKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKE  106 (285)
T ss_dssp             CCCCSSCEEE-EESTT------SHHHHHH---HHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHH
T ss_pred             cccCCCCEEE-EECCC------cHHHHHH---HHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc--CCceeEEECCCCCHH
Confidence            3567899999 99999      9999999   6667788887764  7888888888888765  568899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.+++.+++.++|.|.+++.  ++||++||..+.
T Consensus       107 ~v~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~~iv~isS~~~~  184 (285)
T 2c07_A          107 EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY--GRIINISSIVGL  184 (285)
T ss_dssp             HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC--EEEEEECCTHHH
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC--CEEEEECChhhc
Confidence            999999999999999999999999863  4567788999999999999999999999999987776  899999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||++++.++++++.++.+.||+|++|+||++. ++.+..... ....+..
T Consensus       185 ~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~  244 (285)
T 2c07_A          185 TGN------------V-------GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQ-IKKNIIS  244 (285)
T ss_dssp             HCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHH-HHHHHHT
T ss_pred             cCC------------C-------CCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcCHH-HHHHHHh
Confidence            654            2       678899999999999999999999889999999999999 876543210 0001111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......++++.|+      .+.....+|+.+
T Consensus       245 ~~--~~~~~~~~~dvA~~~~~l~~~~~~~~~G~~i  277 (285)
T 2c07_A          245 NI--PAGRMGTPEEVANLACFLSSDKSGYINGRVF  277 (285)
T ss_dssp             TC--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hC--CCCCCCCHHHHHHHHHHHhCCCcCCCCCCEE
Confidence            11  1122568898887      344455677765

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=100.00  E-value=3.8e-33  Score=241.29  Aligned_cols=226  Identities=11%  Similarity=0.030  Sum_probs=178.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+    ..+|||+++   +.+|++.|+.|+.  |+.  .++..+++.+..  .++.+++||++|.++
T Consensus        22 ~~l~~k~vl-VTGas----g~~GIG~~i---a~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~--~~~~~~~~Dl~~~~~   89 (280)
T 3nrc_A           22 GFLAGKKIL-ITGLL----SNKSIAYGI---AKAMHREGAELAFTYVGQ--FKDRVEKLCAEF--NPAAVLPCDVISDQE   89 (280)
T ss_dssp             CTTTTCEEE-ECCCC----STTCHHHHH---HHHHHHTTCEEEEEECTT--CHHHHHHHHGGG--CCSEEEECCTTCHHH
T ss_pred             cccCCCEEE-EECCC----CCCCHHHHH---HHHHHHcCCEEEEeeCch--HHHHHHHHHHhc--CCceEEEeecCCHHH
Confidence            568899999 99965    004599999   6667778877764  665  455666676663  358899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCC------CCC-CCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGL------GFS-HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~------~~~-~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      ++++++++.+++++||+||||||+...      ..+ .+.++|+..+++|+.++++++++++|.|.++ .  ++||++||
T Consensus        90 v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~--g~iv~isS  166 (280)
T 3nrc_A           90 IKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNR-N--ASMVALTY  166 (280)
T ss_dssp             HHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-T--CEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--CeEEEEec
Confidence            999999999999999999999998642      223 7889999999999999999999999999866 4  89999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV  250 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~  250 (292)
                      ..+..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+.....   .
T Consensus       167 ~~~~~~~------------~-------~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~---~  224 (280)
T 3nrc_A          167 IGAEKAM------------P-------SYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNF---K  224 (280)
T ss_dssp             GGGTSCC------------T-------TTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTH---H
T ss_pred             cccccCC------------C-------CchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcch---H
Confidence            9887665            3       678999999999999999999999999999999999999 887764321   1


Q ss_pred             chhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ........  ......+|++.|.      ++.....+|+.+
T Consensus       225 ~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~tG~~i  265 (280)
T 3nrc_A          225 KMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVV  265 (280)
T ss_dssp             HHHHHHHHHSTTCSCCCHHHHHHHHHHTTSGGGTTCCSCEE
T ss_pred             HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCcCCcEE
Confidence            11111111  1223568999887      455566788866

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=100.00  E-value=2.5e-33  Score=240.61  Aligned_cols=219  Identities=16%  Similarity=0.056  Sum_probs=173.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+.+             .....+++|+++.++
T Consensus        24 ~~l~gk~vl-VTGas------~gIG~ai---a~~la~~G~~V~~~~r~~~~~-------------~~~~~~~~Dv~~~~~   80 (266)
T 3uxy_A           24 QGFEGKVAL-VTGAA------GGIGGAV---VTALRAAGARVAVADRAVAGI-------------AADLHLPGDLREAAY   80 (266)
T ss_dssp             --CTTCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEECSSCCTTS-------------CCSEECCCCTTSHHH
T ss_pred             hCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHH-------------HhhhccCcCCCCHHH
Confidence            568999999 99999      9999999   6667788988875  543221             122456899999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|.+++.  ++||++||..+..
T Consensus        81 ~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~iv~isS~~~~~  158 (266)
T 3uxy_A           81 ADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGG--GAIVNVASCWGLR  158 (266)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCSBTTB
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEECCHHhCC
Confidence            99999999999999999999999874  4567789999999999999999999999999988777  9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC--Cccchh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG--TPVRTF  253 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~--~~~~~~  253 (292)
                      +.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+......  ......
T Consensus       159 ~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~  219 (266)
T 3uxy_A          159 PG------------P-------GHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAV  219 (266)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHH
T ss_pred             CC------------C-------CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHH
Confidence            54            2       678999999999999999999999999999999999999 8876532210  011111


Q ss_pred             hhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+..  ......+|++.|.      ++.....+|+.+
T Consensus       220 ~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i  257 (266)
T 3uxy_A          220 AELGRTVPLGRIAEPEDIADVVLFLASDAARYLCGSLV  257 (266)
T ss_dssp             HHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEE
Confidence            11111  1223568999987      555667788866

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=100.00  E-value=1.9e-32  Score=234.88  Aligned_cols=229  Identities=14%  Similarity=0.073  Sum_probs=167.5

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+.  +.++.++++|+++.+
T Consensus         9 ~~~l~~k~vl-ITGas------ggiG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~   76 (266)
T 1xq1_A            9 RWSLKAKTVL-VTGGT------KGIGHAI---VEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRP   76 (266)
T ss_dssp             TTCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHH
T ss_pred             CCCCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeeEEEECCCCCHH
Confidence            4568899999 99999      9999999   556667787776  48988888888888765  557899999999999


Q ss_pred             HHHHHHHHHHHhC-CCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKF-RSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~-~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +++++++++.+++ +++|+||||||+..  +..+.+.++|++.+++|+.+++.++++++|.|.+++.  ++||++||..+
T Consensus        77 ~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~--~~iv~isS~~~  154 (266)
T 1xq1_A           77 EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGC--GNIIFMSSIAG  154 (266)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CEEEEEC----
T ss_pred             HHHHHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEEccchh
Confidence            9999999999988 89999999999863  4566788999999999999999999999999987766  89999999887


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       +...|++||++++.+++++++++.+.||++++|+||++. ++.+..........+.
T Consensus       155 ~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~  215 (266)
T 1xq1_A          155 VVSA------------S-------VGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVI  215 (266)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------
T ss_pred             ccCC------------C-------CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCHHHHHHHH
Confidence            6553            2       567899999999999999999998889999999999999 8866532111111111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ......++++.|.      .+.....+|+.+
T Consensus       216 ~~~--~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  249 (266)
T 1xq1_A          216 SRK--PLGRFGEPEEVSSLVAFLCMPAASYITGQTI  249 (266)
T ss_dssp             ----------CCGGGGHHHHHHHTSGGGTTCCSCEE
T ss_pred             hcC--CCCCCcCHHHHHHHHHHHcCccccCccCcEE
Confidence            111  1112457888876      334445667654

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=6.4e-33  Score=238.82  Aligned_cols=188  Identities=16%  Similarity=0.152  Sum_probs=158.7

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++ |+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++...   .++.++++|++|.+
T Consensus        17 ~~~~~-k~vl-VTGas------~gIG~ai---a~~La~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~   82 (272)
T 2nwq_A           17 GSHMS-STLF-ITGAT------SGFGEAC---ARRFAEAGWSLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRA   82 (272)
T ss_dssp             ----C-CEEE-ESSTT------TSSHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHH
T ss_pred             CCCcC-cEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHH
Confidence            35677 8888 99999      9999999   666777887776  48988888888777532   47899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCc-EEEEEcCcc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA-RVVVVSSES  173 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~-~iV~vsS~~  173 (292)
                      +++++++++.++++++|+||||||+..   +..+.+.++|+..+++|+.|+++++++++|.|.+++.  + +||++||..
T Consensus        83 ~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~--g~~IV~isS~~  160 (272)
T 2nwq_A           83 AMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGA--GASIVNLGSVA  160 (272)
T ss_dssp             HHHHHHHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCT--TCEEEEECCGG
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcEEEEeCCch
Confidence            999999999999999999999999853   4556788999999999999999999999999987766  7 999999998


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +..+.            +       +...|++||++++.|+++++.|+.+.||+||+|+||+|+ ++.+.
T Consensus       161 ~~~~~------------~-------~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~  211 (272)
T 2nwq_A          161 GKWPY------------P-------GSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLV  211 (272)
T ss_dssp             GTSCC------------T-------TCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC------
T ss_pred             hccCC------------C-------CCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhc
Confidence            77654            2       677899999999999999999999999999999999999 88653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=100.00  E-value=8.6e-33  Score=239.40  Aligned_cols=230  Identities=15%  Similarity=0.181  Sum_probs=179.2

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH-HHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW-DKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|++  |+. +..+++.+++.+.  +.++.++++|++|.
T Consensus        24 ~~~~~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~   91 (283)
T 1g0o_A           24 SASLEGKVAL-VTGAG------RGIGREM---AMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANVGVV   91 (283)
T ss_dssp             GGCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTCH
T ss_pred             ccCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh--CCCeEEEEcCCCCH
Confidence            3568899999 99999      9999999   6667778887764  664 3466667777655  56889999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.|+++++++++|.|.  ..  ++||++||..+
T Consensus        92 ~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~--g~iv~isS~~~  167 (283)
T 1g0o_A           92 EDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE--IG--GRLILMGSITG  167 (283)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSC--TT--CEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC--CeEEEEechhh
Confidence            9999999999999999999999999863  456678899999999999999999999999983  34  89999999887


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc----CC-
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF----GT-  248 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~----~~-  248 (292)
                      ..+..           +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+.....    .. 
T Consensus       168 ~~~~~-----------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~  229 (283)
T 1g0o_A          168 QAKAV-----------P-------KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGEN  229 (283)
T ss_dssp             TCSSC-----------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTT
T ss_pred             ccCCC-----------C-------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccc
Confidence            65431           1       367899999999999999999999999999999999999 876543110    00 


Q ss_pred             -ccchhhhhhc----cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 -PVRTFSWISR----VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 -~~~~~~~~~~----~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       .......+..    ......+|++.|.      ++.....+|+.+
T Consensus       230 ~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i  275 (283)
T 1g0o_A          230 LSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVI  275 (283)
T ss_dssp             CCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             cCHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHHhCccccCcCCCEE
Confidence             0111111111    1122468999887      455566788765

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=100.00  E-value=9.9e-33  Score=238.32  Aligned_cols=189  Identities=16%  Similarity=0.122  Sum_probs=156.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhC-CCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEK-PSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~   98 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.... .+.++.++++|++|.++
T Consensus         3 ~~~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   72 (278)
T 1spx_A            3 RFAEKVAI-ITGSS------NGIGRAT---AVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAG   72 (278)
T ss_dssp             TTTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHH
T ss_pred             CCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHH
Confidence            46789999 99999      9999999   666677787776  489988888888774321 24578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCC----CCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSH----TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~----~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ++++++++.++++++|+||||||+..  +..+.    +.++|+..+++|+.|++.++++++|.|.++.   ++||++||.
T Consensus        73 ~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---g~iv~isS~  149 (278)
T 1spx_A           73 QDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISSI  149 (278)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCT
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CeEEEEecc
Confidence            99999999999999999999999863  34455    8889999999999999999999999997653   899999998


Q ss_pred             cc-ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         173 SH-RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       173 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .+ ..+.            +       +...|++||++++.++++++.++.+.||+||+|+||+|. ++...
T Consensus       150 ~~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~  202 (278)
T 1spx_A          150 ASGLHAT------------P-------DFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSA  202 (278)
T ss_dssp             TSSSSCC------------T-------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC---
T ss_pred             cccccCC------------C-------CccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccc
Confidence            77 5443            2       677899999999999999999999889999999999999 87654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=100.00  E-value=8.9e-33  Score=236.77  Aligned_cols=227  Identities=15%  Similarity=0.111  Sum_probs=177.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.     .++.++++|++|.++
T Consensus         8 ~~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~d~~~   72 (263)
T 3ak4_A            8 FDLSGRKAI-VTGGS------KGIGAAI---ARALDKAGATVAIADLDVMAAQAVVAGLE-----NGGFAVEVDVTKRAS   72 (263)
T ss_dssp             TCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHTCT-----TCCEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHh-----cCCeEEEEeCCCHHH
Confidence            457899999 99999      9999999   666777887776  488877766655442     267889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.+++.++++++|.|.+++ .  ++||++||..+.
T Consensus        73 v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~  150 (263)
T 3ak4_A           73 VDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTK--GVIVNTASLAAK  150 (263)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC--CEEEEECCGGGT
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC--eEEEEecccccc
Confidence            99999999999999999999999863  346678889999999999999999999999998766 6  899999998876


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccc-----ccCC-
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWW-----RFGT-  248 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~-----~~~~-  248 (292)
                      .+.            +       +...|++||++++.|+++++.++.+.||+||+|+||++. ++.+...     .... 
T Consensus       151 ~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~  211 (263)
T 3ak4_A          151 VGA------------P-------LLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMT  211 (263)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSC
T ss_pred             cCC------------C-------CchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccC
Confidence            554            2       577899999999999999999999889999999999999 8765421     0000 


Q ss_pred             ccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 PVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .......+..  ......+|++.|.      ++.....+|+.+
T Consensus       212 ~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~  254 (263)
T 3ak4_A          212 PEAVRAEYVSLTPLGRIEEPEDVADVVVFLASDAARFMTGQGI  254 (263)
T ss_dssp             HHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             cHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEE
Confidence            0011111101  1122568999887      444456678755

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=100.00  E-value=1.4e-32  Score=233.55  Aligned_cols=180  Identities=14%  Similarity=0.201  Sum_probs=155.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++     +.++.++++|++|.+++++++
T Consensus         1 k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~   65 (248)
T 3asu_A            1 MIVL-VTGAT------AGFGECI---TRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEML   65 (248)
T ss_dssp             CEEE-ETTTT------STTHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHH
T ss_pred             CEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cCceEEEEcCCCCHHHHHHHH
Confidence            4677 99999      9999999   666667787776  48888888777766     247889999999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +++.++++++|+||||||+..   +..+.+.++|+..+++|+.|+++++++++|.|.+++.  ++||++||..+..+.  
T Consensus        66 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~--g~iv~isS~~~~~~~--  141 (248)
T 3asu_A           66 ASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNH--GHIINIGSTAGSWPY--  141 (248)
T ss_dssp             HTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCGGGTSCC--
T ss_pred             HHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--ceEEEEccchhccCC--
Confidence            999999999999999999862   4567788999999999999999999999999987766  999999999877654  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc--cccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI--TVSK  241 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~--~~~~  241 (292)
                                +       +...|++||++++.|+++++.|+.++||+||+|+||+|.  ++.+
T Consensus       142 ----------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~  187 (248)
T 3asu_A          142 ----------A-------GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSN  187 (248)
T ss_dssp             ----------T-------TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-----
T ss_pred             ----------C-------CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchh
Confidence                      2       678999999999999999999999999999999999998  5543

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=100.00  E-value=1.6e-32  Score=236.79  Aligned_cols=226  Identities=12%  Similarity=0.068  Sum_probs=172.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--Ec-CHHHHHHHHHHHHhhCCCCceEEEEccCCCh-
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QN-CWDKANDAISKILTEKPSAQCIAMELDLCRL-   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-   96 (292)
                      .+++||+++ ||||+      +|||+++   +..|++.|+.|+  .| +.++++++.+++.+.. +.++.++++|++|. 
T Consensus         7 ~~~~~k~~l-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~   75 (276)
T 1mxh_A            7 EASECPAAV-ITGGA------RRIGHSI---AVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSS   75 (276)
T ss_dssp             ----CCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSST
T ss_pred             hccCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCcc
Confidence            457899999 99999      9999999   556677787776  48 8888988888887653 34789999999999 


Q ss_pred             ---HHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCC-----------cchhhhhhhhhhHHHHHHHHHHHHHHhcC
Q psy4251          97 ---KSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTE-----------DGFETTFQVNHLAHFYLTLQLENALIKGA  160 (292)
Q Consensus        97 ---~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~-----------~~~~~~~~vN~~~~~~l~~~ll~~l~~~~  160 (292)
                         ++++++++++.++++++|+||||||+..  +..+.+.           ++|+..+++|+.++++++++++|.|.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~  155 (276)
T 1mxh_A           76 SLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGG  155 (276)
T ss_dssp             THHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC----
T ss_pred             ccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence               9999999999999999999999999863  3456677           89999999999999999999999886211


Q ss_pred             ---CCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         161 ---KLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       161 ---~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                         ...++||++||..+..+.            +       +...|++||++++.|+++++.++.++||+||+|+||+|.
T Consensus       156 ~~~~~~g~iv~isS~~~~~~~------------~-------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~  216 (276)
T 1mxh_A          156 AWRSRNLSVVNLCDAMTDLPL------------P-------GFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSL  216 (276)
T ss_dssp             ---CCCEEEEEECCGGGGSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS
T ss_pred             CCCCCCcEEEEECchhhcCCC------------C-------CCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccc
Confidence               001799999999887654            2       678999999999999999999999999999999999999


Q ss_pred             -cccccccccCCccchhhhhhccccc---cCCHHHhhc------ccccCCCCCccc
Q psy4251         238 -TVSKKWWRFGTPVRTFSWISRVRPV---TNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       238 -~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       +  .....     .....+....+.   ..+|++.|.      ++.....+|+.+
T Consensus       217 t~--~~~~~-----~~~~~~~~~~p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~  265 (276)
T 1mxh_A          217 LP--PAMPQ-----ETQEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTL  265 (276)
T ss_dssp             CC--SSSCH-----HHHHHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             CC--ccCCH-----HHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCccccCccCcEE
Confidence             8  22111     111111011122   458999887      445556778765

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=100.00  E-value=1.4e-32  Score=237.76  Aligned_cols=225  Identities=12%  Similarity=0.049  Sum_probs=178.1

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++     +.++.++++|++|.+
T Consensus        25 ~~~l~~k~vl-VTGas------~GIG~ai---a~~l~~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~   89 (281)
T 3ppi_A           25 IKQFEGASAI-VSGGA------GGLGEAT---VRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFVSTNVTSED   89 (281)
T ss_dssp             CGGGTTEEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHH
T ss_pred             hhccCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEcCCCCHH
Confidence            3578999999 99999      9999999   555667787766  48998888888777     457999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEc-ccccCC--C-----CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh------cCCCC
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLN-AGVFGL--G-----FSHTEDGFETTFQVNHLAHFYLTLQLENALIK------GAKLF  163 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~n-Ag~~~~--~-----~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~------~~~~~  163 (292)
                      +++++++++ ++++++|++||| ||+...  .     .+.+.++|++.+++|+.+++++++.++|.+.+      +..  
T Consensus        90 ~v~~~~~~~-~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~--  166 (281)
T 3ppi_A           90 SVLAAIEAA-NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGER--  166 (281)
T ss_dssp             HHHHHHHHH-TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCC--
T ss_pred             HHHHHHHHH-HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCC--
Confidence            999999999 788999999999 554321  1     25677889999999999999999999999986      334  


Q ss_pred             cEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         164 ARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       164 ~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      ++||++||..+..+.            +       +...|++||+++..|+++++.|+.+.||+||+|+||+|. ++.+.
T Consensus       167 g~iv~isS~~~~~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~  227 (281)
T 3ppi_A          167 GALVLTASIAGYEGQ------------I-------GQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES  227 (281)
T ss_dssp             EEEEEECCGGGTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT
T ss_pred             eEEEEEecccccCCC------------C-------CCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhc
Confidence            899999999888765            2       678999999999999999999999999999999999999 88766


Q ss_pred             ccccCCccchhhhhhccccccCCHHHhhc----ccccCCCCCccc
Q psy4251         243 WWRFGTPVRTFSWISRVRPVTNFQVDLTG----TAEKVGLSGLPD  283 (292)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~~~~G~~~  283 (292)
                      .... ....+.... .......+|++.|+    .-.....+|+.+
T Consensus       228 ~~~~-~~~~~~~~~-~~~~~~~~pedvA~~v~~l~s~~~~tG~~i  270 (281)
T 3ppi_A          228 VGEE-ALAKFAANI-PFPKRLGTPDEFADAAAFLLTNGYINGEVM  270 (281)
T ss_dssp             TCHH-HHHHHHHTC-CSSSSCBCHHHHHHHHHHHHHCSSCCSCEE
T ss_pred             ccHH-HHHHHHhcC-CCCCCCCCHHHHHHHHHHHHcCCCcCCcEE
Confidence            4321 011111111 01123568999987    112246677755

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=100.00  E-value=4.7e-33  Score=238.19  Aligned_cols=217  Identities=12%  Similarity=0.042  Sum_probs=172.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++|+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++.           ...++.++++|++|+++
T Consensus        24 ~~~~~k~vl-VTGas------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~-----------~~~~~~~~~~Dv~d~~~   82 (260)
T 3un1_A           24 MRNQQKVVV-ITGAS------QGIGAGL---VRAYRDRNYRVVATSRSIKPS-----------ADPDIHTVAGDISKPET   82 (260)
T ss_dssp             HHTTCCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEESSCCCC-----------SSTTEEEEESCTTSHHH
T ss_pred             hCcCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCChhhc-----------ccCceEEEEccCCCHHH
Confidence            347899999 99999      9999999   6667788888764  553221           13478999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.+++.  ++||++||..+..
T Consensus        83 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--g~iv~isS~~~~~  160 (260)
T 3un1_A           83 ADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGS--GHIVSITTSLVDQ  160 (260)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCTTTTS
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--cEEEEEechhhcc
Confidence            99999999999999999999999874  4567788999999999999999999999999998877  9999999987653


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +..                 ..+...|++||++++.|+++++.++.++||+||+|+||+|. ++.......    .+...
T Consensus       161 ~~~-----------------~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~----~~~~~  219 (260)
T 3un1_A          161 PMV-----------------GMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAETHS----TLAGL  219 (260)
T ss_dssp             CBT-----------------TCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGGGHH----HHHTT
T ss_pred             CCC-----------------CCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHHHHH----HHhcc
Confidence            221                 11457899999999999999999999999999999999999 887542211    11111


Q ss_pred             hhccccccCCHHHhhc----ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG----TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~----~~~~~~~~G~~~  283 (292)
                      .  ......+|++.|+    .......+|+.+
T Consensus       220 ~--p~~r~~~~~dva~av~~L~~~~~itG~~i  249 (260)
T 3un1_A          220 H--PVGRMGEIRDVVDAVLYLEHAGFITGEIL  249 (260)
T ss_dssp             S--TTSSCBCHHHHHHHHHHHHHCTTCCSCEE
T ss_pred             C--CCCCCcCHHHHHHHHHHhcccCCCCCcEE
Confidence            1  1223568888887    334455677755

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=100.00  E-value=2e-32  Score=241.31  Aligned_cols=187  Identities=14%  Similarity=0.096  Sum_probs=159.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-----CHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-----CWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-----~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      ++++|+++ ||||+      +|||+++   +.+|++.|+.|++  |     +.++++++.+.+...  +.++.++++|++
T Consensus         2 ~m~~k~vl-VTGas------~GIG~ai---a~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~--~~~~~~~~~Dvt   69 (324)
T 3u9l_A            2 VMSKKIIL-ITGAS------SGFGRLT---AEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN--DVDLRTLELDVQ   69 (324)
T ss_dssp             ---CCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHH--TCCEEEEECCTT
T ss_pred             CCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhc--CCcEEEEEeecC
Confidence            35688998 99999      9999999   6667788988873  3     467777777777665  568999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      |.++++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|.+++.  ++||++||.
T Consensus        70 d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~--g~iV~isS~  147 (324)
T 3u9l_A           70 SQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKH--GLLIWISSS  147 (324)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCG
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CEEEEEecc
Confidence            999999999999999999999999999863  5667889999999999999999999999999988777  999999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ++.....           +       ....|++||++++.++++++.|+.+.||+|++|+||++. ++.
T Consensus       148 ~~~~~~~-----------~-------~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~  198 (324)
T 3u9l_A          148 SSAGGTP-----------P-------YLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTN  198 (324)
T ss_dssp             GGTSCCC-----------S-------SCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC-----
T ss_pred             hhccCCC-----------C-------cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCch
Confidence            8774331           2       567899999999999999999999999999999999997 554

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=100.00  E-value=7.3e-33  Score=238.88  Aligned_cols=225  Identities=14%  Similarity=0.051  Sum_probs=176.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+    .++|||+++   +..|+++|+.|+.  |+.+ .++..+++.+..+  .+.++++|++|.+++
T Consensus         3 ~l~~k~vl-VTGas----~~~gIG~~~---a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~v   71 (275)
T 2pd4_A            3 FLKGKKGL-IVGVA----NNKSIAYGI---AQSCFNQGATLAFTYLNES-LEKRVRPIAQELN--SPYVYELDVSKEEHF   71 (275)
T ss_dssp             TTTTCEEE-EECCC----STTSHHHHH---HHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT--CCCEEECCTTCHHHH
T ss_pred             CCCCCEEE-EECCC----CCCcHHHHH---HHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC--CcEEEEcCCCCHHHH
Confidence            47899999 99984    015999999   6667788887764  7764 5556666665532  478899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +++++++.++++++|+||||||+..      +..+.+.++|+..+++|+.++++++++++|.|++  .  ++||++||..
T Consensus        72 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~--g~iv~isS~~  147 (275)
T 2pd4_A           72 KSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN--G--ASVLTLSYLG  147 (275)
T ss_dssp             HHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--E--EEEEEEECGG
T ss_pred             HHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--C--CEEEEEecch
Confidence            9999999999999999999999863      3457788999999999999999999999999864  3  8999999988


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      +..+.            +       +...|++||++++.|+++++.++.++||+||+|+||+|. ++.+.....   ...
T Consensus       148 ~~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~---~~~  205 (275)
T 2pd4_A          148 STKYM------------A-------HYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADF---RMI  205 (275)
T ss_dssp             GTSBC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTH---HHH
T ss_pred             hcCCC------------C-------CchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhcccc---HHH
Confidence            77654            2       677899999999999999999999999999999999999 887653210   111


Q ss_pred             hhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...+..  ......+|++.|.      ++.....+|+++
T Consensus       206 ~~~~~~~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~  244 (275)
T 2pd4_A          206 LKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVH  244 (275)
T ss_dssp             HHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHhcCCcCCCCCHHHHHHHHHHHhCccccCCCCCEE
Confidence            111111  1123568999987      444566778765

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=100.00  E-value=4.1e-32  Score=231.93  Aligned_cols=228  Identities=14%  Similarity=0.096  Sum_probs=181.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++|+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++++.  +.++.++++|++|.++
T Consensus         9 ~~l~~k~vl-ItGas------ggiG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~   76 (260)
T 3awd_A            9 LRLDNRVAI-VTGGA------QNIGLAC---VTALAEAGARVIIADLDEAMATKAVEDLRME--GHDVSSVVMDVTNTES   76 (260)
T ss_dssp             GCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHH
Confidence            457899999 99999      9999999   555667777776  48888888888888765  4579999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..   +..+.+.++|+..+++|+.+++.++++++|.|.+++.  ++||++||..+.
T Consensus        77 ~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~  154 (260)
T 3awd_A           77 VQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQ--GVIVAIGSMSGL  154 (260)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC--CEEEEEecchhc
Confidence            99999999999999999999999864   3456788899999999999999999999999987766  999999998776


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc-cccccCCccchh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK-KWWRFGTPVRTF  253 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~-~~~~~~~~~~~~  253 (292)
                      .+.            +     ..+...|++||++++.+++++++++.+.||++++|+||+|. ++.+ .....    .+.
T Consensus       155 ~~~------------~-----~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~----~~~  213 (260)
T 3awd_A          155 IVN------------R-----PQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKP----ELY  213 (260)
T ss_dssp             SCC------------S-----SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCH----HHH
T ss_pred             ccC------------C-----CCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCCh----HHH
Confidence            543            1     00237899999999999999999999889999999999999 8876 32110    111


Q ss_pred             hhh-hc-cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWI-SR-VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~-~~-~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+ .. ......+|++.|+      .......+|+.+
T Consensus       214 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  251 (260)
T 3awd_A          214 DAWIAGTPMGRVGQPDEVASVVQFLASDAASLMTGAIV  251 (260)
T ss_dssp             HHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHhcCCcCCCCCHHHHHHHHHHHhCchhccCCCcEE
Confidence            111 11 1123568898887      344455677655

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=100.00  E-value=3.1e-32  Score=232.95  Aligned_cols=227  Identities=16%  Similarity=0.171  Sum_probs=181.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--Ec-CHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QN-CWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .| +.+++++..+++.+.  +.++.++++|++|.+
T Consensus         3 ~~l~~k~vl-ITGas------ggiG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~   70 (261)
T 1gee_A            3 KDLEGKVVV-ITGSS------TGLGKSM---AIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVES   70 (261)
T ss_dssp             GGGTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHH
T ss_pred             CCCCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc--CCceEEEECCCCCHH
Confidence            357899999 99999      9999999   555667787766  47 888888888888765  458899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~  174 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.+++.++++++|.|.++. .  ++||++||..+
T Consensus        71 ~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~--~~iv~isS~~~  148 (261)
T 1gee_A           71 DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIK--GTVINMSSVHE  148 (261)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC--CEEEEECCGGG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCC--CEEEEeCCHHh
Confidence            999999999999999999999999864  345678889999999999999999999999998765 6  89999999877


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       +...|++||++++.++++++.++.+.||++++|+||++. ++.+.....  + ...
T Consensus       149 ~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~-~~~  206 (261)
T 1gee_A          149 KIPW------------P-------LFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFAD--P-EQR  206 (261)
T ss_dssp             TSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHS--H-HHH
T ss_pred             cCCC------------C-------CccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccC--h-hHH
Confidence            6554            2       678999999999999999999999889999999999999 887653211  0 111


Q ss_pred             hhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+..  ......+|++.|.      ++.....+|+.+
T Consensus       207 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  244 (261)
T 1gee_A          207 ADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITL  244 (261)
T ss_dssp             HHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEE
Confidence            11100  1122468898887      344456677765

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=100.00  E-value=1.9e-32  Score=237.42  Aligned_cols=226  Identities=11%  Similarity=-0.001  Sum_probs=174.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+    .++|||+++   +..|++.|+.|+  .|+.+ .++..+++.+..+  .+.++++|++|.+++
T Consensus        18 ~l~~k~vl-VTGas----~~~gIG~~i---a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v   86 (285)
T 2p91_A           18 LLEGKRAL-ITGVA----NERSIAYGI---AKSFHREGAQLAFTYATPK-LEKRVREIAKGFG--SDLVVKCDVSLDEDI   86 (285)
T ss_dssp             TTTTCEEE-ECCCS----STTSHHHHH---HHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTT--CCCEEECCTTCHHHH
T ss_pred             ccCCCEEE-EECCC----CCCcHHHHH---HHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcC--CeEEEEcCCCCHHHH
Confidence            48899999 99985    004999999   566677787776  37664 5556666665532  378899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +++++++.++++++|+||||||+..      +..+.+.++|+..+++|+.|+++++++++|.|.++ .  ++||++||..
T Consensus        87 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~--g~iv~isS~~  163 (285)
T 2p91_A           87 KNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR-N--GAIVTLSYYG  163 (285)
T ss_dssp             HHHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS-C--CEEEEEECGG
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-C--CEEEEEccch
Confidence            9999999999999999999999863      34467889999999999999999999999999754 4  8999999987


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      +..+.            +       +...|++||++++.|+++++.++.++||+||+|+||+|. ++.+.....   ...
T Consensus       164 ~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~---~~~  221 (285)
T 2p91_A          164 AEKVV------------P-------HYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGF---HLL  221 (285)
T ss_dssp             GTSBC------------T-------TTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTH---HHH
T ss_pred             hccCC------------C-------CccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccch---HHH
Confidence            77654            2       567899999999999999999999999999999999999 886543210   111


Q ss_pred             hhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...+..  ......+|++.|.      ++.....+|+.+
T Consensus       222 ~~~~~~~~p~~~~~~~~dva~~~~~l~s~~~~~~tG~~~  260 (285)
T 2p91_A          222 MEHTTKVNPFGKPITIEDVGDTAVFLCSDWARAITGEVV  260 (285)
T ss_dssp             HHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             HHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCCCCEE
Confidence            111111  1123568999987      444556677754

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=100.00  E-value=3e-32  Score=239.65  Aligned_cols=183  Identities=15%  Similarity=0.188  Sum_probs=159.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-----------cCHHHHHHHHHHHHhhCCCCceEEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-----------NCWDKANDAISKILTEKPSAQCIAM   89 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-----------r~~~~~~~~~~~l~~~~~~~~~~~~   89 (292)
                      .+++||+++ ||||+      +|||+++   +..|+++|+.|++           |+.++++++.+++.+.  +..   .
T Consensus         5 ~~l~gk~~l-VTGas------~GIG~~~---a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~--~~~---~   69 (319)
T 1gz6_A            5 LRFDGRVVL-VTGAG------GGLGRAY---ALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR--GGK---A   69 (319)
T ss_dssp             CCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT--TCE---E
T ss_pred             CCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhh--CCe---E
Confidence            568899999 99999      9999999   6667788888764           4678888888888765  222   3


Q ss_pred             EccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEE
Q psy4251          90 ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVV  167 (292)
Q Consensus        90 ~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV  167 (292)
                      .+|+++.++++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.|+++++++++|.|++++.  ++||
T Consensus        70 ~~D~~~~~~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~--grIV  147 (319)
T 1gz6_A           70 VANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY--GRII  147 (319)
T ss_dssp             EEECCCGGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEE
T ss_pred             EEeCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--CEEE
Confidence            58999999999999999999999999999999874  3456788999999999999999999999999988777  9999


Q ss_pred             EEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccccc
Q psy4251         168 VVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITV  239 (292)
Q Consensus       168 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~~~  239 (292)
                      ++||..+..+.            +       +...|++||+++..|++++++++.+.||+||+|+||++.++
T Consensus       148 ~vsS~~~~~~~------------~-------~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~t~~  200 (319)
T 1gz6_A          148 MTASASGIYGN------------F-------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRM  200 (319)
T ss_dssp             EECCHHHHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTT
T ss_pred             EECChhhccCC------------C-------CCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCcccc
Confidence            99999887664            2       67899999999999999999999999999999999987433

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=100.00  E-value=4.2e-32  Score=230.59  Aligned_cols=224  Identities=12%  Similarity=0.084  Sum_probs=177.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+.. +.++.++++|++|+++++++
T Consensus         2 ~k~vl-ItGas------ggiG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~   70 (250)
T 2cfc_A            2 SRVAI-VTGAS------SGNGLAI---ATRFLARGDRVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAA   70 (250)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHH
T ss_pred             CCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHH
Confidence            67888 99999      9999999   555667777765  488888888777772222 45789999999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccCC-----CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGL-----GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~-----~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      ++++.++++++|+||||||+...     ..+.+.++++..+++|+.+++.+++.++|.|.+++.  ++||++||..+..+
T Consensus        71 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~isS~~~~~~  148 (250)
T 2cfc_A           71 IAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGA--GVIVNIASVASLVA  148 (250)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTSC
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC--CEEEEECChhhccC
Confidence            99999999999999999998642     445678899999999999999999999999988776  99999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|++||++++.++++++.++.+.||++++|+||+|. ++.+.....   ..+...+
T Consensus       149 ~------------~-------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~~~~~~  206 (250)
T 2cfc_A          149 F------------P-------GRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQ---PELRDQV  206 (250)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTS---HHHHHHH
T ss_pred             C------------C-------CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCC---HHHHHHH
Confidence            4            2       678999999999999999999999889999999999999 886642110   0111111


Q ss_pred             hc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|+      .+.....+|+.+
T Consensus       207 ~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  241 (250)
T 2cfc_A          207 LARIPQKEIGTAAQVADAVMFLAGEDATYVNGAAL  241 (250)
T ss_dssp             HTTCTTCSCBCHHHHHHHHHHHHSTTCTTCCSCEE
T ss_pred             HhcCCCCCCcCHHHHHHHHHHHcCchhhcccCCEE
Confidence            11  1122468999887      333445677765

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=100.00  E-value=5.1e-32  Score=229.25  Aligned_cols=223  Identities=15%  Similarity=0.151  Sum_probs=178.4

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE---EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY---QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~---~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ||+++ ||||+      +|||+++   +.+|+++|+.|+   .|+.++.++..+++.+.  +.++.++++|++|.+++++
T Consensus         1 ~k~vl-VTGas------ggiG~~l---a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~   68 (244)
T 1edo_A            1 SPVVV-VTGAS------RGIGKAI---ALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEA   68 (244)
T ss_dssp             CCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHH
T ss_pred             CCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEeCCCCCHHHHHH
Confidence            57888 99999      9999999   556667787765   37888888888888765  4588999999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++.++++++|+||||||+..  +..+.+.+++++.+++|+.+++.+++.++|.|.+++.  ++||++||..+..+. 
T Consensus        69 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~~~-  145 (244)
T 1edo_A           69 MMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK--GRIINIASVVGLIGN-  145 (244)
T ss_dssp             HHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCTHHHHCC-
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC--CEEEEECChhhcCCC-
Confidence            99999999999999999999864  3456688899999999999999999999999987766  999999999777654 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISR  258 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~  258 (292)
                                 +       +...|++||++++.++++++.++.+.||++++++||++. ++.+..... ....+....  
T Consensus       146 -----------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~--  204 (244)
T 1edo_A          146 -----------I-------GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED-MEKKILGTI--  204 (244)
T ss_dssp             -----------T-------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHH-HHHHHHTSC--
T ss_pred             -----------C-------CCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcChH-HHHHHhhcC--
Confidence                       2       677899999999999999999999889999999999999 876543211 000111111  


Q ss_pred             cccccCCHHHhhc-------ccccCCCCCccc
Q psy4251         259 VRPVTNFQVDLTG-------TAEKVGLSGLPD  283 (292)
Q Consensus       259 ~~~~~~~~~~~a~-------~~~~~~~~G~~~  283 (292)
                      ......+|++.|.       .+.....+|+.+
T Consensus       205 ~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~  236 (244)
T 1edo_A          205 PLGRTGQPENVAGLVEFLALSPAASYITGQAF  236 (244)
T ss_dssp             TTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEE
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCccCCcCCCEE
Confidence            1112468888886       334445677765

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=100.00  E-value=1.3e-31  Score=226.89  Aligned_cols=202  Identities=14%  Similarity=0.162  Sum_probs=170.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-------EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-------LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-------~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      +|+++ ||||+      +|||++++   .+|++.|+       .|+  .|+.+++++..+++...  +.++.++++|++|
T Consensus         2 ~k~vl-ITGas------ggiG~~la---~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~   69 (244)
T 2bd0_A            2 KHILL-ITGAG------KGIGRAIA---LEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISD   69 (244)
T ss_dssp             CEEEE-EETTT------SHHHHHHH---HHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTS
T ss_pred             CCEEE-EECCC------ChHHHHHH---HHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCC
Confidence            67888 99999      99999994   45556665       554  58888888888888654  5689999999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      .++++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.+++.++++++|.|.+++.  ++||++||..
T Consensus        70 ~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~isS~~  147 (244)
T 2bd0_A           70 MADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS--GHIFFITSVA  147 (244)
T ss_dssp             HHHHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGG
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC--CEEEEEecch
Confidence            99999999999999999999999999863  3456788899999999999999999999999987766  9999999998


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      +..+.            +       +...|++||++++.++++++.++.+.||++++|+||+|. ++.+.....    . 
T Consensus       148 ~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~----~-  203 (244)
T 2bd0_A          148 ATKAF------------R-------HSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDE----M-  203 (244)
T ss_dssp             GTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCST----T-
T ss_pred             hcCCC------------C-------CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcccc----c-
Confidence            77654            2       678899999999999999999999999999999999999 887654221    0 


Q ss_pred             hhhhhccccccCCHHHhhc
Q psy4251         253 FSWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~  271 (292)
                        .     ....+|++.|.
T Consensus       204 --~-----~~~~~~~dva~  215 (244)
T 2bd0_A          204 --Q-----ALMMMPEDIAA  215 (244)
T ss_dssp             --G-----GGSBCHHHHHH
T ss_pred             --c-----ccCCCHHHHHH
Confidence              0     12458888887

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=100.00  E-value=6e-32  Score=231.44  Aligned_cols=229  Identities=16%  Similarity=0.160  Sum_probs=174.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhC-----CCCceEEEEccC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEK-----PSAQCIAMELDL   93 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~-----~~~~~~~~~~Dl   93 (292)
                      .++++|+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+..     +..++.++++|+
T Consensus         3 ~~~~~k~vl-ITGas------ggiG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   72 (264)
T 2pd6_A            3 NRLRSALAL-VTGAG------SGIGRAV---SVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADV   72 (264)
T ss_dssp             CCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCT
T ss_pred             cccCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecC
Confidence            357899999 99999      9999999   555667777766  488888887776665431     115789999999


Q ss_pred             CChHHHHHHHHHHHHhCCCc-cEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEE
Q psy4251          94 CRLKSVKKFAEEYQKKFRSL-NILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVV  169 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~i-d~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~v  169 (292)
                      +|.++++++++++.++++++ |+||||||...  +..+.+.++++..+++|+.+++.++++++|.|.+++ .  ++||++
T Consensus        73 ~~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~--g~iv~i  150 (264)
T 2pd6_A           73 SEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCR--GSIINI  150 (264)
T ss_dssp             TSHHHHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--EEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC--ceEEEE
Confidence            99999999999999999999 99999999864  345678889999999999999999999999998765 5  899999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT  248 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~  248 (292)
                      ||..+..+.            +       +...|++||++++.+++++++++.+.||++++|+||++. ++.+..... .
T Consensus       151 sS~~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~  210 (264)
T 2pd6_A          151 SSIVGKVGN------------V-------GQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQK-V  210 (264)
T ss_dssp             CCTHHHHCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC---------
T ss_pred             CChhhccCC------------C-------CChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcCHH-H
Confidence            998777654            2       678999999999999999999999889999999999999 876543221 1


Q ss_pred             ccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         249 PVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...+....  ......++++.|+      .......+|+.+
T Consensus       211 ~~~~~~~~--~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  249 (264)
T 2pd6_A          211 VDKITEMI--PMGHLGDPEDVADVVAFLASEDSGYITGTSV  249 (264)
T ss_dssp             --CTGGGC--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHhC--CCCCCCCHHHHHHHHHHHcCCcccCCCCCEE
Confidence            11111111  1123468888887      333445667655

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=100.00  E-value=9.9e-32  Score=228.84  Aligned_cols=226  Identities=18%  Similarity=0.154  Sum_probs=180.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+.  +.++.++++|++|+++
T Consensus         7 ~~~~~~~vl-VtGas------ggiG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   74 (255)
T 1fmc_A            7 LRLDGKCAI-ITGAG------AGIGKEI---AITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQE   74 (255)
T ss_dssp             GCCTTCEEE-ETTTT------SHHHHHH---HHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EECCc------cHHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh--CCceEEEEcCCCCHHH
Confidence            457899999 99999      9999999   666777887776  48888888888888765  4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCC-CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGL-GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~-~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      ++++++++.++++++|+||||||.... ..+.+.++++..+++|+.+++.++++++|.|.++..  ++||++||..+..+
T Consensus        75 ~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~~  152 (255)
T 1fmc_A           75 LSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG--GVILTITSMAAENK  152 (255)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEEcchhhcCC
Confidence            999999999999999999999998642 236788899999999999999999999999987766  89999999877654


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|++||++++.+++++++++.+.||++++++||++. ++.+.....    .+...+
T Consensus       153 ~------------~-------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~----~~~~~~  209 (255)
T 1fmc_A          153 N------------I-------NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITP----EIEQKM  209 (255)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCH----HHHHHH
T ss_pred             C------------C-------CCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccCh----HHHHHH
Confidence            3            2       677899999999999999999999889999999999999 776542111    111111


Q ss_pred             -hc-cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 -SR-VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 -~~-~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       .. ......++++.|.      .+.....+|+.|
T Consensus       210 ~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  244 (255)
T 1fmc_A          210 LQHTPIRRLGQPQDIANAALFLCSPAASWVSGQIL  244 (255)
T ss_dssp             HHTCSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HhcCCcccCCCHHHHHHHHHHHhCCccccCCCcEE
Confidence             00 1122568888887      333344567644

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=100.00  E-value=4.2e-32  Score=230.19  Aligned_cols=226  Identities=14%  Similarity=0.127  Sum_probs=164.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|++   |+.+++++..+++.+.  +.++.++++|++|.++
T Consensus         2 ~l~~~~vl-ItGas------ggiG~~~---a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   69 (247)
T 2hq1_A            2 QLKGKTAI-VTGSS------RGLGKAI---AWKLGNMGANIVLNGSPASTSLDATAEEFKAA--GINVVVAKGDVKNPED   69 (247)
T ss_dssp             TTTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT--TCCEEEEESCTTSHHH
T ss_pred             CCCCcEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHH
Confidence            46789999 99999      9999999   5666677877763   5666777777777654  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++++..+++|+.+++.++++++|.|.+++.  ++||++||..+..
T Consensus        70 ~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~  147 (247)
T 2hq1_A           70 VENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKS--GKIINITSIAGII  147 (247)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTC--EEEEEECC-----
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--cEEEEEcChhhcc
Confidence            99999999999999999999999863  3456788899999999999999999999999987766  8999999987765


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||++++.+++++++++.+.||++|+++||++. ++.+..... ....+...
T Consensus       148 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~  207 (247)
T 2hq1_A          148 GN------------A-------GQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDK-VKEMYLNN  207 (247)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHH-HHHHHHTT
T ss_pred             CC------------C-------CCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcchH-HHHHHHhh
Confidence            54            2       567899999999999999999999889999999999999 776543210 00011111


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .  ......++++.|+      .+.....+|+.+
T Consensus       208 ~--~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  239 (247)
T 2hq1_A          208 I--PLKRFGTPEEVANVVGFLASDDSNYITGQVI  239 (247)
T ss_dssp             S--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             C--CCCCCCCHHHHHHHHHHHcCcccccccCcEE
Confidence            1  1123568888887      333345567644

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=100.00  E-value=1.4e-32  Score=260.43  Aligned_cols=186  Identities=16%  Similarity=0.180  Sum_probs=158.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+++||+++ ||||+      +|||+++   +..|+++|+.|++.+.+.++++.+++.+.  +.++..+.+|++  ++++
T Consensus       318 ~~l~gkval-VTGas------~GIG~a~---A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~--~~~~  383 (604)
T 2et6_A          318 VSLKDKVVL-ITGAG------AGLGKEY---AKWFAKYGAKVVVNDFKDATKTVDEIKAA--GGEAWPDQHDVA--KDSE  383 (604)
T ss_dssp             CCCTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEECSSCCHHHHHHHHHT--TCEEEEECCCHH--HHHH
T ss_pred             cccCCCeEE-EECcc------hHHHHHH---HHHHHHCCCEEEEEeCccHHHHHHHHHhc--CCeEEEEEcChH--HHHH
Confidence            468999999 99999      9999999   77788899988864433456667777665  557888888884  5567


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.+++++||+||||||+..  ++.+++.++|++.+++|+.|+++++++++|+|+++..  |+||++||.++..+.
T Consensus       384 ~~~~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~--G~IVnisS~ag~~~~  461 (604)
T 2et6_A          384 AIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQF--GRIINITSTSGIYGN  461 (604)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCHHHHSCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--CEEEEECChhhccCC
Confidence            888999999999999999999863  5678899999999999999999999999999988777  999999999887765


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                  +       +...|++||+++.+|+++++.|+.++||+||+|+||. . +|.+.
T Consensus       462 ------------~-------~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~~  506 (604)
T 2et6_A          462 ------------F-------GQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTLS  506 (604)
T ss_dssp             ------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC---
T ss_pred             ------------C-------CChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCccccc
Confidence                        3       6789999999999999999999999999999999995 8 77654

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=100.00  E-value=2e-32  Score=232.60  Aligned_cols=217  Identities=13%  Similarity=0.143  Sum_probs=167.3

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++++             .+..+++|++|.+
T Consensus        10 ~~~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~D~~~~~   66 (247)
T 1uzm_A           10 KPPFVSRSVL-VTGGN------RGIGLAI---AQRLAADGHKVAVTHRGSGAPK-------------GLFGVEVDVTDSD   66 (247)
T ss_dssp             CCCCCCCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTCHH
T ss_pred             cccCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCChHHHH-------------HhcCeeccCCCHH
Confidence            4568899999 99999      9999999   6667777877764  6543221             1224899999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.++++++++++|.|++++.  ++||++||..+.
T Consensus        67 ~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~  144 (247)
T 1uzm_A           67 AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKF--GRMIFIGSVSGL  144 (247)
T ss_dssp             HHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCCCC-
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--CEEEEECCHhhc
Confidence            999999999999999999999999864  4567788999999999999999999999999988777  999999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||++++.|++++++|+.++||+||+|+||+++ ++.+..... ....+..
T Consensus       145 ~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~~~~~~~  204 (247)
T 1uzm_A          145 WGI------------G-------NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDER-IQQGALQ  204 (247)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHH-HHHHHGG
T ss_pred             cCC------------C-------CChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcCHH-HHHHHHh
Confidence            654            2       577899999999999999999999899999999999999 876543110 0001111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|.      ++.....+|+.+
T Consensus       205 ~~--p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~i  237 (247)
T 1uzm_A          205 FI--PAKRVGTPAEVAGVVSFLASEDASYISGAVI  237 (247)
T ss_dssp             GC--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             cC--CCCCCcCHHHHHHHHHHHcCccccCCcCCEE
Confidence            11  1123568999887      455566788765

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=100.00  E-value=8e-32  Score=229.21  Aligned_cols=218  Identities=14%  Similarity=0.125  Sum_probs=164.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+.         +.   ..+.++++|++|.++
T Consensus         3 m~l~~k~vl-VTGas------~giG~~i---a~~l~~~G~~V~~~~r~~~~---------~~---~~~~~~~~D~~d~~~   60 (250)
T 2fwm_X            3 MDFSGKNVW-VTGAG------KGIGYAT---ALAFVEAGAKVTGFDQAFTQ---------EQ---YPFATEVMDVADAAQ   60 (250)
T ss_dssp             CCCTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCCCS---------SC---CSSEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCchhh---------hc---CCceEEEcCCCCHHH
Confidence            357899999 99999      9999999   6667788887764  65431         11   127889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.+++.++++++|.|.+++.  ++||++||..+..
T Consensus        61 ~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~--g~iv~isS~~~~~  138 (250)
T 2fwm_X           61 VAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRG--GAIVTVASDAAHT  138 (250)
T ss_dssp             HHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCC--CEEEEECchhhCC
Confidence            99999999999999999999999863  4567788999999999999999999999999988777  9999999998776


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc-CCcc-chh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF-GTPV-RTF  253 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~-~~~~-~~~  253 (292)
                      +.            +       +...|++||++++.|+++++.|+.+.||+||+|+||++. ++.+..... .... .+.
T Consensus       139 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~  199 (250)
T 2fwm_X          139 PR------------I-------GMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIR  199 (250)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC--------------------
T ss_pred             CC------------C-------CCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHh
Confidence            54            2       678999999999999999999999889999999999999 886543110 0001 111


Q ss_pred             h-------hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 S-------WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~-------~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .       ..  ......+|++.|.      ++.....+|+.+
T Consensus       200 ~~~~~~~~~~--p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i  240 (250)
T 2fwm_X          200 GFGEQFKLGI--PLGKIARPQEIANTILFLASDLASHITLQDI  240 (250)
T ss_dssp             ------------------CHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hhhhcccccC--CCCCCcCHHHHHHHHHHHhCccccCCCCCEE
Confidence            1       01  1112468898887      444556778765

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=100.00  E-value=4e-32  Score=234.90  Aligned_cols=184  Identities=19%  Similarity=0.173  Sum_probs=161.2

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +++|+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|.++++
T Consensus         3 ~~~k~vl-VTGas------~gIG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~   67 (281)
T 3m1a_A            3 ESAKVWL-VTGAS------SGFGRAI---AEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERID   67 (281)
T ss_dssp             -CCCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHH
T ss_pred             CCCcEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHH
Confidence            5688999 99999      9999999   666777887776  48877766655433     457999999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.++++++|+||||||+.  .+..+.+.++|+..+++|+.|++.++++++|.|++++.  ++||++||..+..+.
T Consensus        68 ~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~~~~  145 (281)
T 3m1a_A           68 VVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGS--GSVVNISSFGGQLSF  145 (281)
T ss_dssp             HHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTCCC
T ss_pred             HHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEEEEcCccccCCC
Confidence            99999999999999999999986  35667888999999999999999999999999988777  999999999887664


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                  +       +...|++||++++.++++++.++.++||+||+|+||+|. ++...
T Consensus       146 ------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~  191 (281)
T 3m1a_A          146 ------------A-------GFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGK  191 (281)
T ss_dssp             ------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCC
T ss_pred             ------------C-------CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccc
Confidence                        2       678999999999999999999999999999999999999 87654

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=100.00  E-value=9.1e-32  Score=230.45  Aligned_cols=226  Identities=16%  Similarity=0.091  Sum_probs=173.0

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.++++|++|.+
T Consensus         7 ~~~~~~k~vl-VTGas------ggiG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~   71 (265)
T 2o23_A            7 CRSVKGLVAV-ITGGA------SGLGLAT---AERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEK   71 (265)
T ss_dssp             -CCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHH
T ss_pred             ccCCCCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEeCCcHhHHHHHHHh-----CCceEEEEcCCCCHH
Confidence            3568899999 99999      9999999   556667787776  47777777666655     357899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCC--CC------CCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc------CCCC
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGL--GF------SHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLF  163 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~--~~------~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~------~~~~  163 (292)
                      +++++++++.++++++|+||||||+...  ..      +.+.++|+..+++|+.+++.++++++|.|.++      +.  
T Consensus        72 ~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~--  149 (265)
T 2o23_A           72 DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQR--  149 (265)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCC--
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCC--
Confidence            9999999999999999999999998642  22      35778899999999999999999999999876      45  


Q ss_pred             cEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         164 ARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       164 ~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      ++||++||..+..+.            +       +...|++||++++.++++++.++.+.||+||+|+||++. ++.+.
T Consensus       150 ~~iv~isS~~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~  210 (265)
T 2o23_A          150 GVIINTASVAAFEGQ------------V-------GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS  210 (265)
T ss_dssp             EEEEEECCTHHHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----
T ss_pred             cEEEEeCChhhcCCC------------C-------CCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccc
Confidence            899999999877654            2       678999999999999999999999889999999999999 88765


Q ss_pred             ccccCCccchhhhhhccccccCCHHHhhc----ccccCCCCCccc
Q psy4251         243 WWRFGTPVRTFSWISRVRPVTNFQVDLTG----TAEKVGLSGLPD  283 (292)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~~~~G~~~  283 (292)
                      .... ....+.... .......+|++.|.    .......+|+.+
T Consensus       211 ~~~~-~~~~~~~~~-~~~~~~~~~~dva~~~~~l~~~~~~~G~~i  253 (265)
T 2o23_A          211 LPEK-VCNFLASQV-PFPSRLGDPAEYAHLVQAIIENPFLNGEVI  253 (265)
T ss_dssp             -------CHHHHTC-SSSCSCBCHHHHHHHHHHHHHCTTCCSCEE
T ss_pred             cCHH-HHHHHHHcC-CCcCCCCCHHHHHHHHHHHhhcCccCceEE
Confidence            3221 111111111 01123568898887    112345667654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=100.00  E-value=3.7e-32  Score=232.74  Aligned_cols=226  Identities=10%  Similarity=0.016  Sum_probs=174.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+    ..+|||+++   +.+|+++|+.|+  .|+.+ .++..+++.+..+  .+.++++|++|.++
T Consensus         4 ~~l~~k~vl-VTGas----~~~gIG~~i---a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~--~~~~~~~D~~~~~~   72 (261)
T 2wyu_A            4 VDLSGKKAL-VMGVT----NQRSLGFAI---AAKLKEAGAEVALSYQAER-LRPEAEKLAEALG--GALLFRADVTQDEE   72 (261)
T ss_dssp             ECCTTCEEE-EESCC----SSSSHHHHH---HHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTT--CCEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EECCC----CCCcHHHHH---HHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcC--CcEEEECCCCCHHH
Confidence            357899999 99984    005999999   555667777766  47754 4455666655532  47889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ++++++++.++++++|+||||||+..      +..+.+.++|++.+++|+.++++++++++|.|.+  .  ++||++||.
T Consensus        73 v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~--g~iv~isS~  148 (261)
T 2wyu_A           73 LDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE--G--GGIVTLTYY  148 (261)
T ss_dssp             HHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--E--EEEEEEECG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcc--C--CEEEEEecc
Confidence            99999999999999999999999863      3456788999999999999999999999998863  3  899999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      .+..+.            +       +...|++||++++.++++++.++.++||+||+|+||+|. ++.+.....   ..
T Consensus       149 ~~~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~  206 (261)
T 2wyu_A          149 ASEKVV------------P-------KYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGF---TK  206 (261)
T ss_dssp             GGTSBC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTH---HH
T ss_pred             cccCCC------------C-------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhcccc---HH
Confidence            776654            2       567899999999999999999999999999999999999 876543210   11


Q ss_pred             hhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....+..  ......+|++.|.      ++.....+|+.+
T Consensus       207 ~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~  246 (261)
T 2wyu_A          207 MYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVV  246 (261)
T ss_dssp             HHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEE
Confidence            1111111  1123568999987      444556678755

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=100.00  E-value=2e-31  Score=226.08  Aligned_cols=227  Identities=18%  Similarity=0.142  Sum_probs=179.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.+.. +.++.++++|++|.+++
T Consensus         4 ~~~~~~vl-VtGas------ggiG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~   72 (248)
T 2pnf_A            4 KLQGKVSL-VTGST------RGIGRAI---AEKLASAGSTVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESI   72 (248)
T ss_dssp             CCTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHH
T ss_pred             ccCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHH
Confidence            57899999 99999      9999999   555667787766  488888888887776522 45789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||...  +..+.+.++++..+++|+.++++++++++|.|.+++.  ++||++||..+..+
T Consensus        73 ~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~~  150 (248)
T 2pnf_A           73 NKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRW--GRIVNISSVVGFTG  150 (248)
T ss_dssp             HHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTC--EEEEEECCHHHHHC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC--cEEEEEccHHhcCC
Confidence            9999999999999999999999864  3456678899999999999999999999999987766  89999999877665


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|+++|++++.+++++++++.+.||++++++||++. ++....... ....+....
T Consensus       151 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~  210 (248)
T 2pnf_A          151 N------------V-------GQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEE-IKQKYKEQI  210 (248)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHH-HHHHHHHTC
T ss_pred             C------------C-------CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhccHH-HHHHHHhcC
Confidence            4            2       567899999999999999999998889999999999999 876543210 000111111


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ......++++.|.      .+.....+|+.+
T Consensus       211 --~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  241 (248)
T 2pnf_A          211 --PLGRFGSPEEVANVVLFLCSELASYITGEVI  241 (248)
T ss_dssp             --TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             --CCCCccCHHHHHHHHHHHhCchhhcCCCcEE
Confidence              1122457888887      333345567654

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=100.00  E-value=3.5e-32  Score=233.35  Aligned_cols=225  Identities=11%  Similarity=0.018  Sum_probs=173.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+    ..+|||+++   +.+|+++|+.|+  .|+. +.++..+++.+..+  ...++++|++|.+++
T Consensus         6 ~l~~k~vl-VTGas----~~~gIG~~i---a~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v   74 (265)
T 1qsg_A            6 FLSGKRIL-VTGVA----SKLSIAYGI---AQAMHREGAELAFTYQND-KLKGRVEEFAAQLG--SDIVLQCDVAEDASI   74 (265)
T ss_dssp             TTTTCEEE-ECCCC----STTSHHHHH---HHHHHHTTCEEEEEESST-TTHHHHHHHHHHTT--CCCEEECCTTCHHHH
T ss_pred             ccCCCEEE-EECCC----CCCCHHHHH---HHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcC--CcEEEEccCCCHHHH
Confidence            37899999 99984    004999999   566777787776  3765 45556666665532  347899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC------CCCC-CCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG------LGFS-HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~------~~~~-~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +++++++.++++++|+||||||+..      +..+ .+.++|+..+++|+.++++++++++|.|.+  .  ++||++||.
T Consensus        75 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~--g~iv~isS~  150 (265)
T 1qsg_A           75 DTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP--G--SALLTLSYL  150 (265)
T ss_dssp             HHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--E--EEEEEEECG
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--C--CEEEEEcch
Confidence            9999999999999999999999864      2234 688899999999999999999999999864  3  899999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      .+..+.            +       +...|++||++++.|+++++.++.++||+||+|+||+|. ++.+.....   ..
T Consensus       151 ~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~---~~  208 (265)
T 1qsg_A          151 GAERAI------------P-------NYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDF---RK  208 (265)
T ss_dssp             GGTSBC------------T-------TTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTH---HH
T ss_pred             hhccCC------------C-------CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhccccc---HH
Confidence            777654            2       567899999999999999999999999999999999999 886543210   11


Q ss_pred             hhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ....+..  ......+|++.|.      ++.....+|+.+
T Consensus       209 ~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~  248 (265)
T 1qsg_A          209 MLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVV  248 (265)
T ss_dssp             HHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             HHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCccCCEE
Confidence            1111111  1123568999987      444556678755

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=100.00  E-value=4e-32  Score=232.93  Aligned_cols=217  Identities=16%  Similarity=0.109  Sum_probs=171.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++             +.++.++++|++|.+++
T Consensus         5 ~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~Dl~~~~~v   61 (264)
T 2dtx_A            5 DLRDKVVI-VTGAS------MGIGRAI---AERFVDEGSKVIDLSIHDPG-------------EAKYDHIECDVTNPDQV   61 (264)
T ss_dssp             GGTTCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESSCCC-------------SCSSEEEECCTTCHHHH
T ss_pred             ccCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEecCccc-------------CCceEEEEecCCCHHHH
Confidence            57899999 99999      9999999   6667778887764  55322             34788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.+++.++++++|.|.+++.  ++||++||..+..+
T Consensus        62 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~~~  139 (264)
T 2dtx_A           62 KASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRD--PSIVNISSVQASII  139 (264)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS--CEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--cEEEEECCchhccC
Confidence            9999999999999999999999863  4567788999999999999999999999999987766  99999999987765


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc--CCcc----
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF--GTPV----  250 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~--~~~~----  250 (292)
                      .            +       +...|++||++++.|+++++.++.+. |+||+|+||++. ++.+.....  ....    
T Consensus       140 ~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~  199 (264)
T 2dtx_A          140 T------------K-------NASAYVTSKHAVIGLTKSIALDYAPL-LRCNAVCPATIDTPLVRKAAELEVGSDPMRIE  199 (264)
T ss_dssp             C------------T-------TBHHHHHHHHHHHHHHHHHHHHHTTT-SEEEEEEECSBCSHHHHHHHHHHHCSCHHHHH
T ss_pred             C------------C-------CchhHHHHHHHHHHHHHHHHHHhcCC-cEEEEEEeCCCcCcchhhhhhcccccCchhhH
Confidence            4            2       67899999999999999999999988 999999999999 876543100  0000    


Q ss_pred             chhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....+..  ......+|++.|.      ++.....+|+.+
T Consensus       200 ~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i  240 (264)
T 2dtx_A          200 KKISEWGHEHPMQRIGKPQEVASAVAFLASREASFITGTCL  240 (264)
T ss_dssp             HHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEE
Confidence            11111100  1123568999887      444556677765

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=100.00  E-value=3.2e-31  Score=231.44  Aligned_cols=231  Identities=16%  Similarity=0.089  Sum_probs=179.1

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      +..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+.. +.++.++++|++|.
T Consensus        20 ~~~~l~~k~vl-ITGas------ggiG~~l---a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~   88 (302)
T 1w6u_A           20 PPNSFQGKVAF-ITGGG------TGLGKGM---TTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDP   88 (302)
T ss_dssp             CTTTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCH
T ss_pred             CcccCCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCH
Confidence            34678999999 99999      9999999   555667787776  489888888888886653 34789999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHH-hcCCCCcEEEEEcCcc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALI-KGAKLFARVVVVSSES  173 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~-~~~~~~~~iV~vsS~~  173 (292)
                      ++++++++++.++++++|+||||||+..  +..+.+.++++..+++|+.+++.++++++|.+. ++..  ++||++||..
T Consensus        89 ~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~--~~iv~isS~~  166 (302)
T 1w6u_A           89 DMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKG--AAFLSITTIY  166 (302)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--EEEEEECCTH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC--CEEEEEcccc
Confidence            9999999999999999999999999753  345678889999999999999999999999997 3445  8999999998


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-c-ccccccccCCc-c
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-T-VSKKWWRFGTP-V  250 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~-~~~~~~~~~~~-~  250 (292)
                      +..+.            +       +...|++||++++.+++++++++.+.||++++|+||++. + +.......... .
T Consensus       167 ~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~  227 (302)
T 1w6u_A          167 AETGS------------G-------FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEK  227 (302)
T ss_dssp             HHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHH
T ss_pred             cccCC------------C-------CcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHH
Confidence            77654            2       677899999999999999999999889999999999998 5 54432111000 0


Q ss_pred             chhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+....  ......++++.|+      .+.....+|+.+
T Consensus       228 ~~~~~~--p~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  264 (302)
T 1w6u_A          228 EMIGRI--PCGRLGTVEELANLAAFLCSDYASWINGAVI  264 (302)
T ss_dssp             HHHTTC--TTSSCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             HHHhcC--CcCCCCCHHHHHHHHHHHcCCcccccCCCEE
Confidence            111111  1122468898887      333445567655

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=100.00  E-value=1.8e-31  Score=226.78  Aligned_cols=225  Identities=17%  Similarity=0.080  Sum_probs=178.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++...   .++.++++|++|.++
T Consensus         2 ~~~~~k~vl-VtGas------ggiG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~   68 (251)
T 1zk4_A            2 NRLDGKVAI-ITGGT------LGIGLAI---ATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDG   68 (251)
T ss_dssp             CTTTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHH
T ss_pred             CCCCCcEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHH
Confidence            457899999 99999      9999999   555667777766  48888887777766432   478999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|++.+++|+.+++.+++.++|.|.+++ +  ++||++||..+.
T Consensus        69 ~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~--~~iv~isS~~~~  146 (251)
T 1zk4_A           69 WTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLG--ASIINMSSIEGF  146 (251)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC--CEEEEeCCchhc
Confidence            99999999999999999999999863  456678899999999999999999999999997654 3  699999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      .+.            +       +...|++||++++.++++++.++.  +.||++++|+||++. ++.+.....    ..
T Consensus       147 ~~~------------~-------~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~----~~  203 (251)
T 1zk4_A          147 VGD------------P-------SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGA----EE  203 (251)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTH----HH
T ss_pred             cCC------------C-------CCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCch----hh
Confidence            654            2       678999999999999999999987  889999999999999 876643210    11


Q ss_pred             hhhhhccc--cccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISRVR--PVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~~~--~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ........  ....++++.|.      .......+|+.+
T Consensus       204 ~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  242 (251)
T 1zk4_A          204 AMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEF  242 (251)
T ss_dssp             HHTSTTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hHHHhhcCCCCCCcCHHHHHHHHHHHcCcccccccCcEE
Confidence            11010011  12468888887      344445677755

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.98  E-value=8.6e-32  Score=227.49  Aligned_cols=221  Identities=14%  Similarity=0.111  Sum_probs=171.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++   ..+++     +  +.++++|+++ ++++++
T Consensus         2 ~k~vl-VTGas------~giG~~~---a~~l~~~G~~V~~~~r~~~~---~~~~~-----~--~~~~~~D~~~-~~~~~~   60 (239)
T 2ekp_A            2 ERKAL-VTGGS------RGIGRAI---AEALVARGYRVAIASRNPEE---AAQSL-----G--AVPLPTDLEK-DDPKGL   60 (239)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCHH---HHHHH-----T--CEEEECCTTT-SCHHHH
T ss_pred             CCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHH---HHHhh-----C--cEEEecCCch-HHHHHH
Confidence            67888 99999      9999999   666777787776  477654   22333     2  6788999999 999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++.++++++|+||||||+..  +..+.+.++|++.+++|+.+++.++++++|.|.+++.  ++||++||..+..+.. 
T Consensus        61 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~~-  137 (239)
T 2ekp_A           61 VKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGW--GRVLFIGSVTTFTAGG-  137 (239)
T ss_dssp             HHHHHHHHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTSCCT-
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEECchhhccCCC-
Confidence            9999999999999999999863  4567788999999999999999999999999988767  9999999998765430 


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhc-
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISR-  258 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~-  258 (292)
                                      ..+...|++||++++.|++++++++.++||+||+|+||++. ++.+.....  + .....+.. 
T Consensus       138 ----------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~-~~~~~~~~~  198 (239)
T 2ekp_A          138 ----------------PVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQN--P-ELYEPITAR  198 (239)
T ss_dssp             ----------------TSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTC--H-HHHHHHHTT
T ss_pred             ----------------CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccC--H-HHHHHHHhc
Confidence                            01567999999999999999999999999999999999999 886543210  0 11111101 


Q ss_pred             -cccccCCHHHhhc------ccccCCCCCcccc-CCcc
Q psy4251         259 -VRPVTNFQVDLTG------TAEKVGLSGLPDS-EWMW  288 (292)
Q Consensus       259 -~~~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w  288 (292)
                       ......+|++.|.      ++.....+|+.+. +.-|
T Consensus       199 ~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~  236 (239)
T 2ekp_A          199 IPMGRWARPEEIARVAAVLCGDEAEYLTGQAVAVDGGF  236 (239)
T ss_dssp             CTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred             CCCCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECCCc
Confidence             1123568999987      4445567888653 4434

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.98  E-value=2.4e-32  Score=234.87  Aligned_cols=223  Identities=10%  Similarity=-0.047  Sum_probs=170.9

Q ss_pred             CCCCceEEEEcCC--CCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHH-HHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          22 TYNGCLAILCTGD--MEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDK-ANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        22 ~l~g~~~vlItGa--~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      +++||+++ ||||  +      +|||+++   +..|++.|+.|+  .|+.++ +++..    +.. +.++.++++|++|+
T Consensus         4 ~l~~k~vl-VTGa~~s------~gIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~----~~~-~~~~~~~~~Dv~~~   68 (269)
T 2h7i_A            4 LLDGKRIL-VSGIITD------SSIAFHI---ARVAQEQGAQLVLTGFDRLRLIQRIT----DRL-PAKAPLLELDVQNE   68 (269)
T ss_dssp             TTTTCEEE-ECCCSST------TSHHHHH---HHHHHHTTCEEEEEECSCHHHHHHHH----TTS-SSCCCEEECCTTCH
T ss_pred             ccCCCEEE-EECCCCC------CchHHHH---HHHHHHCCCEEEEEecChHHHHHHHH----Hhc-CCCceEEEccCCCH
Confidence            47899999 9999  9      9999999   666777787776  466544 33333    222 34688899999999


Q ss_pred             HHHHHHHHHHHHhCC---CccEEEEcccccC-------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEE
Q psy4251          97 KSVKKFAEEYQKKFR---SLNILVLNAGVFG-------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARV  166 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~---~id~lI~nAg~~~-------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~i  166 (292)
                      ++++++++++.++++   ++|+||||||+..       +..+.+.++|++.+++|+.++++++++++|+|.++    ++|
T Consensus        69 ~~v~~~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----g~i  144 (269)
T 2h7i_A           69 EHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPG----GSI  144 (269)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEE
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC----CeE
Confidence            999999999999998   9999999999864       34567889999999999999999999999998643    899


Q ss_pred             EEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc
Q psy4251         167 VVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR  245 (292)
Q Consensus       167 V~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~  245 (292)
                      |++||.... +.            +       ....|++||++++.|+++++.|+.++||+||+|+||+|+ ++.+....
T Consensus       145 v~iss~~~~-~~------------~-------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~  204 (269)
T 2h7i_A          145 VGMDFDPSR-AM------------P-------AYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVG  204 (269)
T ss_dssp             EEEECCCSS-CC------------T-------TTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHT
T ss_pred             EEEcCcccc-cc------------C-------chHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhcccc
Confidence            999997652 22            2       578899999999999999999999999999999999999 87654311


Q ss_pred             cCCccc-------hhhhhhcccc---ccCCHHHhhc------ccccCCCCCccc
Q psy4251         246 FGTPVR-------TFSWISRVRP---VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       246 ~~~~~~-------~~~~~~~~~~---~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ......       +...+....|   ...+|+|.|.      ++.....+|+.+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~p~dvA~~v~~L~s~~~~~itG~~i  258 (269)
T 2h7i_A          205 GALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDII  258 (269)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEE
T ss_pred             ccchhhHHHHHHHHHHhhhccCCcccCCCCHHHHHHHHHHHhCchhccCcceEE
Confidence            000000       1111101112   2468888887      555667788765

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.98  E-value=4.7e-31  Score=227.53  Aligned_cols=231  Identities=16%  Similarity=0.142  Sum_probs=180.2

Q ss_pred             CCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          18 HPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        18 ~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      .+..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++.++..+++..   ..++.++++|++|
T Consensus         9 ~~~~~l~~k~vl-ITGas------ggiG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~   75 (278)
T 2bgk_A            9 SSTNRLQDKVAI-ITGGA------GGIGETT---AKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTK   75 (278)
T ss_dssp             --CCTTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTC
T ss_pred             CCcccccCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEcCChhHHHHHHHHhCC---CCceEEEECCCCC
Confidence            345678999999 99999      9999999   556667787776  4888777776666632   2378999999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      .++++++++++.++++++|+||||||+..    +..+.+.++|+..+++|+.+++.++++++|.|.+++.  ++||++||
T Consensus        76 ~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~iv~isS  153 (278)
T 2bgk_A           76 DEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKK--GSIVFTAS  153 (278)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTC--EEEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC--CeEEEEee
Confidence            99999999999999999999999999863    3456778899999999999999999999999987766  99999999


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV  250 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~  250 (292)
                      ..+..+..           .       +...|++||++++.+++++++++.+.||++++|+||++. ++.+.....  ..
T Consensus       154 ~~~~~~~~-----------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~  213 (278)
T 2bgk_A          154 ISSFTAGE-----------G-------VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGV--DS  213 (278)
T ss_dssp             GGGTCCCT-----------T-------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSC--CH
T ss_pred             ccccCCCC-----------C-------CCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhccc--ch
Confidence            98775431           1       456899999999999999999999889999999999999 876653210  01


Q ss_pred             chhhhhhc----cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISR----VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~----~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....+..    ......++++.|+      .+.....+|+.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  256 (278)
T 2bgk_A          214 SRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNL  256 (278)
T ss_dssp             HHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hHHHHhhhcccccccccCCHHHHHHHHHHHcCcccccCCCCEE
Confidence            11111100    1123568999887      334455677765

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.98  E-value=4.9e-32  Score=256.63  Aligned_cols=213  Identities=19%  Similarity=0.153  Sum_probs=172.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH---------HHHHHHHHHHHhhCCCCceEEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW---------DKANDAISKILTEKPSAQCIAM   89 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~---------~~~~~~~~~l~~~~~~~~~~~~   89 (292)
                      .+++||+++ ||||+      +|||+++   +..|+++|+.|++  |+.         ++++++.+++.+.  +.++   
T Consensus         4 ~~l~gkval-VTGas------~GIG~a~---A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~--g~~~---   68 (604)
T 2et6_A            4 VDFKDKVVI-ITGAG------GGLGKYY---SLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN--GGVA---   68 (604)
T ss_dssp             CCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT--TCEE---
T ss_pred             CCCCCCEEE-EeCCC------cHHHHHH---HHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc--CCeE---
Confidence            457899999 99999      9999999   6778888988875  332         5677778888765  3333   


Q ss_pred             EccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEE
Q psy4251          90 ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVV  167 (292)
Q Consensus        90 ~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV  167 (292)
                      .+|++|.++++++++++.+++|+||+||||||+..  ++.+.+.++|++.+++|+.|+++++++++|+|++++.  |+||
T Consensus        69 ~~d~~d~~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~--G~IV  146 (604)
T 2et6_A           69 VADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKY--GRIV  146 (604)
T ss_dssp             EEECCCTTCHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEE
T ss_pred             EEEcCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--CEEE
Confidence            36999999999999999999999999999999863  5678899999999999999999999999999988777  9999


Q ss_pred             EEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc
Q psy4251         168 VVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF  246 (292)
Q Consensus       168 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~  246 (292)
                      ++||.++..+.            +       +...|++||+++.+|+++++.|+.++||+||+|+|| +. +|...... 
T Consensus       147 nisS~ag~~~~------------~-------~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~m~~~~~~-  205 (604)
T 2et6_A          147 NTSSPAGLYGN------------F-------GQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSRMTESIMP-  205 (604)
T ss_dssp             EECCHHHHHCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCHHHHTTSC-
T ss_pred             EECCHHHcCCC------------C-------CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCccccccCC-
Confidence            99999888765            3       678999999999999999999999999999999998 56 66543211 


Q ss_pred             CCccchhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         247 GTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                         ....        -..+|++.|.      ++. ...+|+.+
T Consensus       206 ---~~~~--------~~~~pe~vA~~v~~L~s~~-~~itG~~~  236 (604)
T 2et6_A          206 ---PPML--------EKLGPEKVAPLVLYLSSAE-NELTGQFF  236 (604)
T ss_dssp             ---HHHH--------TTCSHHHHHHHHHHHTSSS-CCCCSCEE
T ss_pred             ---hhhh--------ccCCHHHHHHHHHHHhCCc-ccCCCCEE
Confidence               0111        1237888776      333 55677655

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.98  E-value=2.2e-31  Score=229.28  Aligned_cols=189  Identities=21%  Similarity=0.232  Sum_probs=165.1

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +..|++.|+.|+  .|+.+++++..+++.+.  +.++.++++|++|.+
T Consensus        26 ~~~l~~k~vl-ITGas------ggIG~~l---a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~   93 (272)
T 1yb1_A           26 RKSVTGEIVL-ITGAG------HGIGRLT---AYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNRE   93 (272)
T ss_dssp             CCCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             ccccCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc--CCeEEEEEeeCCCHH
Confidence            4668999999 99999      9999999   555667777766  48888888888888765  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++++..+++|+.+++.+++.++|.|.+++.  ++||++||..+.
T Consensus        94 ~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~~iv~isS~~~~  171 (272)
T 1yb1_A           94 DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNH--GHIVTVASAAGH  171 (272)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCCC-C
T ss_pred             HHHHHHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CEEEEEechhhc
Confidence            999999999999999999999999864  3455677899999999999999999999999988777  999999999876


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc---CCCeEEEEecCCccc-cccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY---KYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~---~~gi~v~~v~PG~v~-~~~~  241 (292)
                      .+.            +       +...|++||++++.++++++.++.   +.||+|++|+||+|+ ++.+
T Consensus       172 ~~~------------~-------~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~  222 (272)
T 1yb1_A          172 VSV------------P-------FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIK  222 (272)
T ss_dssp             CCH------------H-------HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTT
T ss_pred             CCC------------C-------CchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Confidence            653            2       678999999999999999999996   668999999999999 8754

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.98  E-value=1.1e-31  Score=229.80  Aligned_cols=236  Identities=17%  Similarity=0.112  Sum_probs=177.9

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..++++|+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++.++..+++.+.. +.++.++++|++|.+
T Consensus         9 ~~~~~~k~vl-ITGas------ggiG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~   77 (265)
T 1h5q_A            9 TISFVNKTII-VTGGN------RGIGLAF---TRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTD   77 (265)
T ss_dssp             EECCTTEEEE-EETTT------SHHHHHH---HHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHH
T ss_pred             CcccCCCEEE-EECCC------chHHHHH---HHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHH
Confidence            3568899999 99999      9999999   556667787776  476555555566665433 457899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~  174 (292)
                      +++++++++.++++++|+||||||+..  +..+.+.++++..+++|+.+++.++++++|.|.++. .  ++||++||..+
T Consensus        78 ~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~--~~iv~~sS~~~  155 (265)
T 1h5q_A           78 IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQK--GSIVVTSSMSS  155 (265)
T ss_dssp             HHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--EEEEEECCGGG
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCC--ceEEEeCCchh
Confidence            999999999999999999999999863  345678899999999999999999999999987653 5  89999999877


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+...          .  .....+...|++||++++.+++++++++.+.||++++|+||+|. ++.+..... ....+.
T Consensus       156 ~~~~~~----------~--~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~  222 (265)
T 1h5q_A          156 QIINQS----------S--LNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKK-IRDHQA  222 (265)
T ss_dssp             TSCCEE----------E--TTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHH-HHHHHH
T ss_pred             hccccc----------c--ccccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccchh-HHHHHH
Confidence            654310          0  00111367899999999999999999999889999999999999 887653211 000111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ......++++.|.      .......+|+.+
T Consensus       223 ~~~--~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  256 (265)
T 1h5q_A          223 SNI--PLNRFAQPEEMTGQAILLLSDHATYMTGGEY  256 (265)
T ss_dssp             HTC--TTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE
T ss_pred             hcC--cccCCCCHHHHHHHHHhhccCchhcCcCcEE
Confidence            111  1122458888877      344445677644

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.98  E-value=3e-31  Score=225.80  Aligned_cols=225  Identities=15%  Similarity=0.135  Sum_probs=177.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCce-EEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQC-IAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dls~~~   97 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++     +.++ .++++|++|.+
T Consensus         7 ~~~~~k~vl-ITGas------ggiG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~   71 (254)
T 2wsb_A            7 FRLDGACAA-VTGAG------SGIGLEI---CRAFAASGARLILIDREAAALDRAAQEL-----GAAVAARIVADVTDAE   71 (254)
T ss_dssp             TCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEEECCTTCHH
T ss_pred             cCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh-----cccceeEEEEecCCHH
Confidence            568899999 99999      9999999   555667777765  48888887777766     2356 88999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.+ ++++|+||||||+..  +..+.+.+++++.+++|+.+++.+++.++|.|.+++.  ++||++||..+.
T Consensus        72 ~~~~~~~~~~~-~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--~~iv~isS~~~~  148 (254)
T 2wsb_A           72 AMTAAAAEAEA-VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGA--GAIVNLGSMSGT  148 (254)
T ss_dssp             HHHHHHHHHHH-HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHh-hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--cEEEEEecchhc
Confidence            99999999988 889999999999864  4566788899999999999999999999999988777  999999998876


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +     ..+...|++||++++.++++++.++.++||++++|+||++. ++.+.....  + .+..
T Consensus       149 ~~~------------~-----~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~-~~~~  208 (254)
T 2wsb_A          149 IVN------------R-----PQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRER--P-ELFE  208 (254)
T ss_dssp             SCC------------S-----SSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTC--H-HHHH
T ss_pred             cCC------------C-----CCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccC--h-HHHH
Confidence            543            1     00237899999999999999999999889999999999999 876543210  0 1111


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+..  ......+|++.|.      .+.....+|+.+
T Consensus       209 ~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  245 (254)
T 2wsb_A          209 TWLDMTPMGRCGEPSEIAAAALFLASPAASYVTGAIL  245 (254)
T ss_dssp             HHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHhcCCCCCCCCHHHHHHHHHHHhCcccccccCCEE
Confidence            1100  1123568898887      344455677765

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.98  E-value=8e-32  Score=231.79  Aligned_cols=224  Identities=16%  Similarity=0.108  Sum_probs=175.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++.      ++.++++|++|.++
T Consensus         5 ~~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~Dv~d~~~   68 (270)
T 1yde_A            5 TRYAGKVVV-VTGGG------RGIGAGI---VRAFVNSGARVVICDKDESGGRALEQELP------GAVFILCDVTQEDD   68 (270)
T ss_dssp             CTTTTCEEE-EETCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHCT------TEEEEECCTTSHHH
T ss_pred             CCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHhc------CCeEEEcCCCCHHH
Confidence            457899999 99999      9999999   666777787776  488877766655431      47889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++++|+||||||+..   +..+.+.++|++.+++|+.++++++++++|+|.++ .  ++||++||..+.
T Consensus        69 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~--g~iv~isS~~~~  145 (270)
T 1yde_A           69 VKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-Q--GNVINISSLVGA  145 (270)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T--CEEEEECCHHHH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-C--CEEEEEcCcccc
Confidence            99999999999999999999999863   34567888999999999999999999999999765 4  899999998877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc-CCccc-h
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF-GTPVR-T  252 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~-~~~~~-~  252 (292)
                      .+.            +       +...|++||++++.++++++.++.++||+||+|+||+|. ++.+..... ..... +
T Consensus       146 ~~~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~  206 (270)
T 1yde_A          146 IGQ------------A-------QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASI  206 (270)
T ss_dssp             HCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHH
T ss_pred             CCC------------C-------CCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHH
Confidence            654            2       567899999999999999999999999999999999999 876543210 00001 1


Q ss_pred             hhhhhc-cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISR-VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~-~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...... ......+|+|.|.      ++ ....+|+.+
T Consensus       207 ~~~~~~~p~~r~~~p~dva~~v~~L~s~-~~~itG~~i  243 (270)
T 1yde_A          207 REGMLAQPLGRMGQPAEVGAAAVFLASE-ANFCTGIEL  243 (270)
T ss_dssp             HHHHHTSTTSSCBCHHHHHHHHHHHHHH-CTTCCSCEE
T ss_pred             HHHhhcCCCCCCcCHHHHHHHHHHHccc-CCCcCCCEE
Confidence            110000 1122468888887      33 456677654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.98  E-value=7.6e-31  Score=226.63  Aligned_cols=194  Identities=16%  Similarity=0.117  Sum_probs=164.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +..|++.|+.|+  .|+.+++++..+++.+.....++.++++|++|.++
T Consensus        28 ~~l~~k~vl-VTGas------ggIG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~   97 (279)
T 1xg5_A           28 ERWRDRLAL-VTGAS------GGIGAAV---ARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEED   97 (279)
T ss_dssp             GGGTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHH
T ss_pred             cccCCCEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHH
Confidence            458899999 99999      9999999   555667787766  48998888888888766434578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.+++.+++.++|.|.++..+.++||++||..+..
T Consensus        98 v~~~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~  177 (279)
T 1xg5_A           98 ILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR  177 (279)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcc
Confidence            99999999999999999999999863  4556788899999999999999999999999987641117999999987662


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-cccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~  241 (292)
                      ..                 ...+...|+++|++++.|+++++.++.  ..||++++|+||+|. ++..
T Consensus       178 ~~-----------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~  228 (279)
T 1xg5_A          178 VL-----------------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAF  228 (279)
T ss_dssp             CC-----------------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHH
T ss_pred             cC-----------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhh
Confidence            11                 111678899999999999999999998  789999999999999 8753

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.98  E-value=2.7e-31  Score=229.33  Aligned_cols=227  Identities=17%  Similarity=0.173  Sum_probs=175.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++.++..+++...  +.++.++++|++|.+++
T Consensus        31 ~l~~k~vl-ITGas------ggIG~~l---a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~   98 (279)
T 3ctm_A           31 SLKGKVAS-VTGSS------GGIGWAV---AEAYAQAGADVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSV   98 (279)
T ss_dssp             CCTTCEEE-ETTTT------SSHHHHH---HHHHHHHTCEEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHH
Confidence            58899999 99999      9999999   555666677765  47766666666666554  45789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCC-CCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGF-SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~-~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++.++++++|+||||||+..   +.. +.+.++|++.+++|+.+++.+++.++|.|.+++.  ++||++||..+.
T Consensus        99 ~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--~~iv~isS~~~~  176 (279)
T 3ctm_A           99 EETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGK--GSLIITSSISGK  176 (279)
T ss_dssp             HHHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCCTTS
T ss_pred             HHHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CeEEEECchHhc
Confidence            9999999999999999999999863   233 6678889999999999999999999999987776  999999998776


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+..          .+       +...|++||++++.++++++.++.+.| +||+|+||+++ ++.+..... ....+..
T Consensus       177 ~~~~----------~~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~  237 (279)
T 3ctm_A          177 IVNI----------PQ-------LQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFASKD-MKAKWWQ  237 (279)
T ss_dssp             CC-------------C-------CHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCCHH-HHHHHHH
T ss_pred             cCCC----------CC-------CcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccChH-HHHHHHH
Confidence            5410          02       678999999999999999999999889 99999999999 887532110 0001111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......+|++.|.      ++.....+|+.+
T Consensus       238 ~~--p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i  270 (279)
T 3ctm_A          238 LT--PLGREGLTQELVGGYLYLASNASTFTTGSDV  270 (279)
T ss_dssp             HS--TTCSCBCGGGTHHHHHHHHSGGGTTCCSCEE
T ss_pred             hC--CccCCcCHHHHHHHHHHHhCccccCccCCEE
Confidence            11  1112467888887      444456677755

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.98  E-value=5.7e-33  Score=245.52  Aligned_cols=187  Identities=10%  Similarity=0.024  Sum_probs=152.1

Q ss_pred             CCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--cCH---------HHHHHHHHHHHhhC-CCCceEEE
Q psy4251          24 NGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--NCW---------DKANDAISKILTEK-PSAQCIAM   89 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r~~---------~~~~~~~~~l~~~~-~~~~~~~~   89 (292)
                      ++|+++ |||++      +  |||+++   +.+|++.|+.|+.  ++.         ++++...+.+.... ....+.++
T Consensus         1 ~~k~~l-ITGas------~~~GIG~ai---A~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~   70 (329)
T 3lt0_A            1 NEDICF-IAGIG------DTNGYGWGI---AKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDML   70 (329)
T ss_dssp             CCCEEE-EECCS------SSSSHHHHH---HHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEE
T ss_pred             CCcEEE-EECCC------CCCchHHHH---HHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccc
Confidence            468888 99997      6  999999   6667788988873  222         22222222211111 12357889


Q ss_pred             EccCCCh--H------------------HHHHHHHHHHHhCCCccEEEEccccc----CCCCCCCCcchhhhhhhhhhHH
Q psy4251          90 ELDLCRL--K------------------SVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAH  145 (292)
Q Consensus        90 ~~Dls~~--~------------------~v~~~~~~~~~~~~~id~lI~nAg~~----~~~~~~~~~~~~~~~~vN~~~~  145 (292)
                      +||+++.  +                  +++++++++.+++++||+||||||+.    .+..+.+.++|++.+++|+.|+
T Consensus        71 ~~Dv~~~~~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~  150 (329)
T 3lt0_A           71 PFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSL  150 (329)
T ss_dssp             ECCTTCSSGGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHH
T ss_pred             cccccccchhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHH
Confidence            9999998  8                  99999999999999999999999974    3566789999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhh-HHHHhHHHHHHHHHHHHhHhcC-
Q psy4251         146 FYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMT-AYNDTKLCNVLFGEKLATLWYK-  223 (292)
Q Consensus       146 ~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~a~~~~~~~la~~~~~-  223 (292)
                      ++++++++|+|+++    |+||++||..+..+.            +       ... .|++||+++.+|+++++.|+.+ 
T Consensus       151 ~~l~~~~~p~m~~~----g~Iv~isS~~~~~~~------------~-------~~~~~Y~asKaal~~~~~~la~el~~~  207 (329)
T 3lt0_A          151 ISLCKYFVNIMKPQ----SSIISLTYHASQKVV------------P-------GYGGGMSSAKAALESDTRVLAYHLGRN  207 (329)
T ss_dssp             HHHHHHHGGGEEEE----EEEEEEECGGGTSCC------------T-------TCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC----CeEEEEeCccccCCC------------C-------cchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999764    899999999887665            2       453 8999999999999999999988 


Q ss_pred             CCeEEEEecCCccc-cccccc
Q psy4251         224 YKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       224 ~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      +||+||+|+||+|+ +|.+..
T Consensus       208 ~gI~vn~v~PG~v~T~~~~~~  228 (329)
T 3lt0_A          208 YNIRINTISAGPLKSRAATAI  228 (329)
T ss_dssp             HCCEEEEEEECCCCCHHHHTC
T ss_pred             cCeEEEEEecceeechhHhhh
Confidence            89999999999999 887664

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.98  E-value=3.3e-31  Score=224.30  Aligned_cols=223  Identities=14%  Similarity=0.131  Sum_probs=176.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE---EcCHHHHHHHHHHHHhhCCCCceEE-EEccCCChHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY---QNCWDKANDAISKILTEKPSAQCIA-MELDLCRLKSVK  100 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~---~r~~~~~~~~~~~l~~~~~~~~~~~-~~~Dls~~~~v~  100 (292)
                      +|+++ ||||+      +|||+++   +.+|++.|+.|+   .|+.+++++..+++.+.  +.++.. +++|++|.++++
T Consensus         1 ~k~vl-ITGas------ggiG~~~---a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~   68 (245)
T 2ph3_A            1 MRKAL-ITGAS------RGIGRAI---ALRLAEDGFALAIHYGQNREKAEEVAEEARRR--GSPLVAVLGANLLEAEAAT   68 (245)
T ss_dssp             CCEEE-ETTTT------SHHHHHH---HHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHH
T ss_pred             CCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEeccCCCHHHHH
Confidence            46788 99999      9999999   666777887765   37888888888888765  446666 999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.++++++|+||||||+..  +..+.+.++++..+++|+.+++.+++.++|.|.+++.  ++||++||..+..+.
T Consensus        69 ~~~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~~~  146 (245)
T 2ph3_A           69 ALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARF--GRIVNITSVVGILGN  146 (245)
T ss_dssp             HHHHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCTHHHHCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC--CEEEEEeChhhccCC
Confidence            999999999999999999999864  3456788899999999999999999999999987766  899999998777654


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhh
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWIS  257 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~  257 (292)
                                  +       +...|++||++++.+++++++++.+.||++++|+||++. ++.+..... ....+.... 
T Consensus       147 ------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~-  205 (245)
T 2ph3_A          147 ------------P-------GQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLPQE-VKEAYLKQI-  205 (245)
T ss_dssp             ------------S-------SBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHH-HHHHHHHTC-
T ss_pred             ------------C-------CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcCHH-HHHHHHhcC-
Confidence                        2       567899999999999999999998889999999999999 876543210 000111111 


Q ss_pred             ccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         258 RVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       258 ~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ......++++.|.      .......+|+.+
T Consensus       206 -~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  236 (245)
T 2ph3_A          206 -PAGRFGRPEEVAEAVAFLVSEKAGYITGQTL  236 (245)
T ss_dssp             -TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             -CCCCCcCHHHHHHHHHHHhCcccccccCCEE
Confidence             1123458888887      333345567755

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.98  E-value=7.8e-32  Score=228.72  Aligned_cols=221  Identities=13%  Similarity=0.133  Sum_probs=167.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++.. ++      .++.++++|++|.+++
T Consensus         3 ~l~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~-~~------~~~~~~~~D~~~~~~~   65 (246)
T 2ag5_A            3 RLDGKVII-LTAAA------QGIGQAA---ALAFAREGAKVIATDINESKLQELE-KY------PGIQTRVLDVTKKKQI   65 (246)
T ss_dssp             TTTTCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHGGGG-GS------TTEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHH-hc------cCceEEEeeCCCHHHH
Confidence            47899999 99999      9999999   666777787776  48877665433 22      2688999999999998


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +    ++.++++++|+||||||+..  +..+.+.++|+..+++|+.++++++++++|.|.+++.  ++||++||..+..+
T Consensus        66 ~----~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~  139 (246)
T 2ag5_A           66 D----QFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKS--GNIINMSSVASSVK  139 (246)
T ss_dssp             H----HHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCSBTTTB
T ss_pred             H----HHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ceEEEEechHhCcC
Confidence            8    44455789999999999864  3456788999999999999999999999999987766  99999999877654


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc-cCCccchhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR-FGTPVRTFSW  255 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~-~~~~~~~~~~  255 (292)
                      ..           .       +...|++||++++.++++++.|+.++||+||+|+||++. ++.+.... ..........
T Consensus       140 ~~-----------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~  201 (246)
T 2ag5_A          140 GV-----------V-------NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARND  201 (246)
T ss_dssp             CC-----------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHH
T ss_pred             CC-----------C-------CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHH
Confidence            31           1       457899999999999999999999999999999999999 87654211 0000111111


Q ss_pred             hhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +..  ......+|++.|.      ++.....+|+.+
T Consensus       202 ~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~i  237 (246)
T 2ag5_A          202 FLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPV  237 (246)
T ss_dssp             HHHTCTTSSCEEHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHhcCCCCCCCCHHHHHHHHHHHhCccccCCCCCEE
Confidence            100  1122468898887      455566788865

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.98  E-value=1.7e-31  Score=244.99  Aligned_cols=223  Identities=19%  Similarity=0.130  Sum_probs=171.3

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC--HHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC--WDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      ...++||+++ ||||+      +|||+++   +..|+++|+.|+.  |+  .+.+++..++   .    .+.+++||++|
T Consensus       208 ~~~l~gk~~L-VTGgs------gGIG~ai---A~~La~~Ga~Vvl~~r~~~~~~l~~~~~~---~----~~~~~~~Dvtd  270 (454)
T 3u0b_A          208 DKPLDGKVAV-VTGAA------RGIGATI---AEVFARDGATVVAIDVDGAAEDLKRVADK---V----GGTALTLDVTA  270 (454)
T ss_dssp             TSTTTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEECGGGHHHHHHHHHH---H----TCEEEECCTTS
T ss_pred             ccCCCCCEEE-EeCCc------hHHHHHH---HHHHHHCCCEEEEEeCCccHHHHHHHHHH---c----CCeEEEEecCC
Confidence            3557899999 99999      9999999   5556677877764  43  2223222222   2    35689999999


Q ss_pred             hHHHHHHHHHHHHhCCC-ccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          96 LKSVKKFAEEYQKKFRS-LNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~-id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      .++++++++++.+++++ ||+||||||+..  +..+.+.++|+..+++|+.|+++++++++|.|.+++.  ++||++||.
T Consensus       271 ~~~v~~~~~~~~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~--g~iV~iSS~  348 (454)
T 3u0b_A          271 DDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEG--GRVIGLSSM  348 (454)
T ss_dssp             TTHHHHHHHHHHHHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTT--CEEEEECCH
T ss_pred             HHHHHHHHHHHHHHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--CEEEEEeCh
Confidence            99999999999999985 999999999974  4567899999999999999999999999999887666  999999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      ++..+.            +       +...|++||+++..|+++++.++.++||+||+|+||+|+ +|.+.....  ...
T Consensus       349 a~~~g~------------~-------g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~--~~~  407 (454)
T 3u0b_A          349 AGIAGN------------R-------GQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLA--TRE  407 (454)
T ss_dssp             HHHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC------------CH
T ss_pred             HhCCCC------------C-------CCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchh--hHH
Confidence            988775            3       788999999999999999999999999999999999999 888765321  111


Q ss_pred             hhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...... ......+|++.|.      ++.....+|+.+
T Consensus       408 ~~~~~~-~l~r~g~pedvA~~v~fL~s~~a~~itG~~i  444 (454)
T 3u0b_A          408 VGRRLN-SLFQGGQPVDVAELIAYFASPASNAVTGNTI  444 (454)
T ss_dssp             HHHHSB-TTSSCBCHHHHHHHHHHHHCGGGTTCCSCEE
T ss_pred             HHHhhc-cccCCCCHHHHHHHHHHHhCCccCCCCCcEE
Confidence            111110 1112458888887      666777888866

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.98  E-value=1e-31  Score=227.70  Aligned_cols=215  Identities=10%  Similarity=-0.025  Sum_probs=166.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE---E--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY---Q--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~---~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ||+++ ||||+      +|||+++   +..|+++|+.|+   .  |+.+++++..+++  .  +       +|+.|.+++
T Consensus         1 ~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~--~--~-------~~~~~~~~v   59 (244)
T 1zmo_A            1 MVIAL-VTHAR------HFAGPAA---VEALTQDGYTVVCHDASFADAAERQRFESEN--P--G-------TIALAEQKP   59 (244)
T ss_dssp             -CEEE-ESSTT------STTHHHH---HHHHHHTTCEEEECCGGGGSHHHHHHHHHHS--T--T-------EEECCCCCG
T ss_pred             CCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEecCCcCCHHHHHHHHHHh--C--C-------CcccCHHHH
Confidence            57888 99999      9999999   566777787775   2  7777777766655  1  2       233378888


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC-----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG-----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~-----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +++++++.++++++|+||||||+..     +..+.+.++|+..+++|+.++++++++++|.|.+++.  ++||++||..+
T Consensus        60 ~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~--g~iv~isS~~~  137 (244)
T 1zmo_A           60 ERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGG--ASVIFITSSVG  137 (244)
T ss_dssp             GGHHHHHGGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCGGG
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEECChhh
Confidence            9999999999999999999999863     3457788999999999999999999999999988777  99999999987


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc---ccccccCCcc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS---KKWWRFGTPV  250 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~---~~~~~~~~~~  250 (292)
                      ..+.            +       +...|++||++++.|+++++.|+.++||+||+|+||+|+ ++.   +.........
T Consensus       138 ~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~  198 (244)
T 1zmo_A          138 KKPL------------A-------YNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELR  198 (244)
T ss_dssp             TSCC------------T-------TCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHH
T ss_pred             CCCC------------C-------CchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccchHHHH
Confidence            7654            2       567899999999999999999999999999999999999 887   4432110001


Q ss_pred             chhh-hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFS-WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~-~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+.. ..  ......+|++.|.      ++.....+|+.+
T Consensus       199 ~~~~~~~--p~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i  236 (244)
T 1zmo_A          199 ERVDRDV--PLGRLGRPDEMGALITFLASRRAAPIVGQFF  236 (244)
T ss_dssp             HHHHHHC--TTCSCBCHHHHHHHHHHHHTTTTGGGTTCEE
T ss_pred             HHHhcCC--CCCCCcCHHHHHHHHHHHcCccccCccCCEE
Confidence            1111 11  1123568999987      444556678765

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.97  E-value=6.9e-32  Score=226.74  Aligned_cols=208  Identities=13%  Similarity=-0.000  Sum_probs=160.7

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++     +.++.++++|+++.+++++++
T Consensus         2 k~vl-VTGas------~gIG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~   66 (230)
T 3guy_A            2 SLIV-ITGAS------SGLGAEL---AKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLF   66 (230)
T ss_dssp             -CEE-EESTT------SHHHHHH---HHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHH
T ss_pred             CEEE-EecCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHH
Confidence            5677 99999      9999999   555667776665  58988887776655     457889999999999999998


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++.+.   .|+||||||+..  +..+.+.++|++.+++|+.+++.++++++|.|.++.   ++||++||..+..+.   
T Consensus        67 ~~~~~~---~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---~~iv~isS~~~~~~~---  137 (230)
T 3guy_A           67 EQLDSI---PSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQP---VNVVMIMSTAAQQPK---  137 (230)
T ss_dssp             HSCSSC---CSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC---CEEEEECCGGGTSCC---
T ss_pred             HHHhhc---CCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CeEEEEeecccCCCC---
Confidence            887544   499999999863  456778899999999999999999999999997654   699999999887664   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVR  260 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~  260 (292)
                               +       +...|++||+++..|+++++.++.++||+||+|+||+|+ ++.+..... .          ..
T Consensus       138 ---------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~-~----------~~  190 (230)
T 3guy_A          138 ---------A-------QESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSGKS-L----------DT  190 (230)
T ss_dssp             ---------T-------TCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-------------------------
T ss_pred             ---------C-------CCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhcCCC-C----------Cc
Confidence                     2       678999999999999999999999999999999999999 887765321 0          11


Q ss_pred             cccCCHHHhhc-------ccccCCCCCcccc
Q psy4251         261 PVTNFQVDLTG-------TAEKVGLSGLPDS  284 (292)
Q Consensus       261 ~~~~~~~~~a~-------~~~~~~~~G~~~~  284 (292)
                      ....+|++.|.       .+.....+|+.+.
T Consensus       191 ~~~~~~~dvA~~i~~l~~~~~~~~itg~~~~  221 (230)
T 3guy_A          191 SSFMSAEDAALMIHGALANIGNGYVSDITVN  221 (230)
T ss_dssp             --CCCHHHHHHHHHHHCCEETTEEEEEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHhCcCCCCccceeec
Confidence            23468898887       2444455666553

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.97  E-value=7.5e-31  Score=227.51  Aligned_cols=208  Identities=16%  Similarity=0.149  Sum_probs=171.7

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+.. ..++.++++|++|.+
T Consensus        23 ~~~~~~k~vl-ITGas------ggIG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~   91 (286)
T 1xu9_A           23 PEMLQGKKVI-VTGAS------KGIGREM---AYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMT   91 (286)
T ss_dssp             GGGGTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHH
T ss_pred             hhhcCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHH
Confidence            4568899999 99999      9999999   555667787766  499999988888887652 347899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEc-ccccC-CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLN-AGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~n-Ag~~~-~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+|||| ||... +..+.+.++++..+++|+.|++.++++++|.|.++ .  ++||++||.++.
T Consensus        92 ~v~~~~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~--g~iv~isS~~~~  168 (286)
T 1xu9_A           92 FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-N--GSIVVVSSLAGK  168 (286)
T ss_dssp             HHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T--CEEEEEEEGGGT
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC-C--CEEEEECCcccc
Confidence            9999999999999999999999 57653 34456788999999999999999999999998765 3  899999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHh--cCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLW--YKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~--~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      .+.            +       +...|++||++++.++++++.++  ...||++++|+||+|+ ++.......    . 
T Consensus       169 ~~~------------~-------~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~----~-  224 (286)
T 1xu9_A          169 VAY------------P-------MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSG----I-  224 (286)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCG----G-
T ss_pred             cCC------------C-------CccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHHHhccc----c-
Confidence            654            2       67899999999999999999999  5679999999999999 876543111    0 


Q ss_pred             hhhhhccccccCCHHHhhc
Q psy4251         253 FSWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~  271 (292)
                            ......+++++|+
T Consensus       225 ------~~~~~~~~~~vA~  237 (286)
T 1xu9_A          225 ------VHMQAAPKEECAL  237 (286)
T ss_dssp             ------GGGGCBCHHHHHH
T ss_pred             ------ccCCCCCHHHHHH
Confidence                  0112458888887

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.97  E-value=6.8e-31  Score=225.54  Aligned_cols=184  Identities=17%  Similarity=0.158  Sum_probs=159.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+...+.++.++++|++|.+++
T Consensus         4 m~~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v   73 (267)
T 2gdz_A            4 MVNGKVAL-VTGAA------QGIGRAF---AEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQL   73 (267)
T ss_dssp             CCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHH
T ss_pred             ccCCCEEE-EECCC------CcHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHH
Confidence            46789999 99999      9999999   666777787776  488888888887776544345789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC---CCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA---KLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~---~~~~~iV~vsS~~~~~  176 (292)
                      +++++++.++++++|+||||||+.      +.++|++.+++|+.+++.+++.++|.|.++.   .  ++||++||..+..
T Consensus        74 ~~~~~~~~~~~g~id~lv~~Ag~~------~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~  145 (267)
T 2gdz_A           74 RDTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEG--GIIINMSSLAGLM  145 (267)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC------CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC--EEEEEECCGGGTS
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC------ChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCC--CEEEEeCCccccC
Confidence            999999999999999999999975      3578999999999999999999999997653   4  8999999998776


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHH--HhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKL--ATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~l--a~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.            +       +...|++||++++.+++++  +.++.+.||+||+|+||++. ++...
T Consensus       146 ~~------------~-------~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~  195 (267)
T 2gdz_A          146 PV------------A-------QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILES  195 (267)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHG
T ss_pred             CC------------C-------CCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhc
Confidence            54            2       5678999999999999985  68898899999999999999 87654

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.97  E-value=5.5e-32  Score=229.38  Aligned_cols=220  Identities=15%  Similarity=0.066  Sum_probs=169.5

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhh-cCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQ-SSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~-~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .++|+++ ||||+      +|||+++   +.+|++ .|..|+.  |+.+            ....++.++++|++|.+++
T Consensus         2 ~~~k~vl-ITGas------~gIG~~~---a~~l~~~~g~~v~~~~~~~~------------~~~~~~~~~~~Dv~~~~~v   59 (244)
T 4e4y_A            2 NAMANYL-VTGGS------KGIGKAV---VELLLQNKNHTVINIDIQQS------------FSAENLKFIKADLTKQQDI   59 (244)
T ss_dssp             -CCEEEE-EETTT------SHHHHHH---HHHHTTSTTEEEEEEESSCC------------CCCTTEEEEECCTTCHHHH
T ss_pred             CCCCeEE-EeCCC------ChHHHHH---HHHHHhcCCcEEEEeccccc------------cccccceEEecCcCCHHHH
Confidence            4688888 99999      9999999   666777 6777764  4321            1134678999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++.+.  ++++|+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.++    ++||++||..+..+
T Consensus        60 ~~~~~~~~--~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~----g~iv~~sS~~~~~~  133 (244)
T 4e4y_A           60 TNVLDIIK--NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVG----ASIVFNGSDQCFIA  133 (244)
T ss_dssp             HHHHHHTT--TCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEE----EEEEEECCGGGTCC
T ss_pred             HHHHHHHH--hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccC----cEEEEECCHHHccC
Confidence            99996554  679999999999874  56778999999999999999999999999998654    89999999988766


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC------Ccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG------TPV  250 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~------~~~  250 (292)
                      .            +       +...|++||++++.|+++++.|+.++||+||+|+||+|. ++.+......      ...
T Consensus       134 ~------------~-------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~  194 (244)
T 4e4y_A          134 K------------P-------NSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFD  194 (244)
T ss_dssp             C------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHH
T ss_pred             C------------C-------CCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHH
Confidence            5            3       678999999999999999999999999999999999999 8876542110      000


Q ss_pred             chhhhhhc--cccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         251 RTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       251 ~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      ........  ......+|++.|.      ++.....+|+.+ .|.-|+
T Consensus       195 ~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~  242 (244)
T 4e4y_A          195 EAQKQEEKEFPLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGGYT  242 (244)
T ss_dssp             HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred             HHHHHHhhcCCCCCCcCHHHHHHHHHHHhcCccccccCCeEeECCCcc
Confidence            01111111  1223568999987      555667788866 355444

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.97  E-value=1.8e-31  Score=227.46  Aligned_cols=182  Identities=15%  Similarity=0.159  Sum_probs=153.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE-EE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh-H
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL-FY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL-K   97 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~-v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~   97 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+. |+  .|+.+.  +..+++.+..++.++.++++|++|. +
T Consensus         2 ~l~~k~vl-VtGas------~gIG~~~---a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~   69 (254)
T 1sby_A            2 DLTNKNVI-FVAAL------GGIGLDT---SRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVA   69 (254)
T ss_dssp             CCTTCEEE-EETTT------SHHHHHH---HHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHH
T ss_pred             CCCCcEEE-EECCC------ChHHHHH---HHHHHHCCCcEEEEEecCchH--HHHHHHHHhCCCceEEEEEEecCCChH
Confidence            47899999 99999      9999999   5556677764 44  466422  3344555555456899999999998 9


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC---CCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA---KLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~---~~~~~iV~vsS~~~  174 (292)
                      +++++++++.++++++|+||||||+.      +.+++++.+++|+.+++.++++++|.|.++.   .  ++||++||..+
T Consensus        70 ~~~~~~~~~~~~~g~id~lv~~Ag~~------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~--g~iv~isS~~~  141 (254)
T 1sby_A           70 ESKKLLKKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPG--GIIANICSVTG  141 (254)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC--EEEEEECCGGG
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCccC------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCC--CEEEEECchhh
Confidence            99999999999999999999999974      5678999999999999999999999997653   4  89999999987


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      ..+.            +       +...|++||++++.|+++++.++++.||+||+|+||+|+ ++.+.
T Consensus       142 ~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~  191 (254)
T 1sby_A          142 FNAI------------H-------QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHT  191 (254)
T ss_dssp             TSCC------------T-------TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHS
T ss_pred             ccCC------------C-------CchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccc
Confidence            7654            2       677999999999999999999998779999999999999 87654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.97  E-value=1.8e-30  Score=226.75  Aligned_cols=188  Identities=15%  Similarity=0.190  Sum_probs=160.9

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhC---CCCceEEEEccCC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEK---PSAQCIAMELDLC   94 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~---~~~~~~~~~~Dls   94 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+..   .+.++.++++|++
T Consensus        13 ~~~l~~k~vl-VTGas------ggIG~~l---a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~   82 (303)
T 1yxm_A           13 PGLLQGQVAI-VTGGA------TGIGKAI---VKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIR   82 (303)
T ss_dssp             TTTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTT
T ss_pred             cCCCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCC
Confidence            3568999999 99999      9999999   555667777766  489989988888887632   1458999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      |.++++++++++.++++++|+||||||...  +..+.+.++++..+++|+.++++++++++|.+.+...  ++||++||.
T Consensus        83 ~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~~iv~isS~  160 (303)
T 1yxm_A           83 NEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG--GSIVNIIVP  160 (303)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC--EEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CeEEEEEee
Confidence            999999999999999999999999999753  3456678899999999999999999999996544445  899999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      . ..+.            +       ....|+++|+++..++++++.++.+.||++++|+||+|. ++
T Consensus       161 ~-~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  208 (303)
T 1yxm_A          161 T-KAGF------------P-------LAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQT  208 (303)
T ss_dssp             C-TTCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTG
T ss_pred             c-ccCC------------C-------cchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccch
Confidence            7 4332            2       567899999999999999999999889999999999999 74

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.97  E-value=1.7e-31  Score=253.80  Aligned_cols=191  Identities=17%  Similarity=0.155  Sum_probs=147.5

Q ss_pred             cCCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c---------CHHHHHHHHHHHHhhCCC
Q psy4251          15 KLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N---------CWDKANDAISKILTEKPS   83 (292)
Q Consensus        15 ~~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r---------~~~~~~~~~~~l~~~~~~   83 (292)
                      +.+.+..+++||+++ ||||+      +|||+++   +..|+++|+.|++  |         +.++++++.+++.+.  +
T Consensus         9 ~~~~~~~~l~gk~~l-VTGas------~GIG~ai---A~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~--~   76 (613)
T 3oml_A            9 SSSDGKLRYDGRVAV-VTGAG------AGLGREY---ALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA--G   76 (613)
T ss_dssp             ------CCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEC--------------CHHHHHHHHHHT--T
T ss_pred             cCcccccCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh--C
Confidence            445567889999999 99999      9999999   6667788988875  4         566788888888765  3


Q ss_pred             CceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC
Q psy4251          84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK  161 (292)
Q Consensus        84 ~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~  161 (292)
                      ..+   .+|++|.++++++++++.+++++||+||||||+..  ++.+.+.++|+..+++|+.|+++++++++|+|++++.
T Consensus        77 ~~~---~~D~~d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~  153 (613)
T 3oml_A           77 GEA---VADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNY  153 (613)
T ss_dssp             CCE---EECCCCGGGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CeE---EEEeCCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            333   48999999999999999999999999999999874  4567899999999999999999999999999998877


Q ss_pred             CCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccccccc
Q psy4251         162 LFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSK  241 (292)
Q Consensus       162 ~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~~~~~  241 (292)
                        ++||++||.++..+.            +       +...|++||+++.+|+++++.|+.+.||+||+|+||.+.++..
T Consensus       154 --g~IV~isS~a~~~~~------------~-------~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t~~~~  212 (613)
T 3oml_A          154 --GRIIMTSSNSGIYGN------------F-------GQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAASRMTE  212 (613)
T ss_dssp             --EEEEEECCHHHHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------C
T ss_pred             --CEEEEECCHHHcCCC------------C-------CChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCChhhh
Confidence              999999999888765            3       6789999999999999999999999999999999997654443

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.97  E-value=2.4e-31  Score=226.76  Aligned_cols=215  Identities=11%  Similarity=0.046  Sum_probs=165.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++++++.+ +...  +.++..+     |.+++++++
T Consensus         2 k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~--~~~~~~~-----d~~~v~~~~   63 (254)
T 1zmt_A            2 STAI-VTNVK------HFGGMGS---ALRLSEAGHTVACHDESFKQKDELEA-FAET--YPQLKPM-----SEQEPAELI   63 (254)
T ss_dssp             CEEE-ESSTT------STTHHHH---HHHHHHTTCEEEECCGGGGSHHHHHH-HHHH--CTTSEEC-----CCCSHHHHH
T ss_pred             eEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHH-HHhc--CCcEEEE-----CHHHHHHHH
Confidence            5677 99999      9999999   6667788888775  77766666655 6554  3455443     778889999


Q ss_pred             HHHHHhCCCccEEEEccccc-C--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVF-G--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~-~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +++.++++++|+||||||+. .  +..+.+.++|++.+++|+.++++++++++|.|.+++.  ++||++||..+..+.  
T Consensus        64 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~--  139 (254)
T 1zmt_A           64 EAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS--GHIIFITSATPFGPW--  139 (254)
T ss_dssp             HHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCSTTTSCC--
T ss_pred             HHHHHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEECCcccccCC--
Confidence            99999999999999999986 3  4567788999999999999999999999999987766  999999999877654  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCcc---------c-cccccccccCCcc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWK---------I-TVSKKWWRFGTPV  250 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v---------~-~~~~~~~~~~~~~  250 (292)
                                +       +...|++||++++.|+++++.++.++||+||+|+||+|         + ++.+....  ...
T Consensus       140 ----------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~--~~~  200 (254)
T 1zmt_A          140 ----------K-------ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPE--HVA  200 (254)
T ss_dssp             ----------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHH--HHH
T ss_pred             ----------C-------CchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChH--HHH
Confidence                      2       67899999999999999999999999999999999999         6 55433110  000


Q ss_pred             chhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+....  ......+|++.|.      ++.....+|+.+
T Consensus       201 ~~~~~~--p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~~  237 (254)
T 1zmt_A          201 HVKKVT--ALQRLGTQKELGELVAFLASGSCDYLTGQVF  237 (254)
T ss_dssp             HHHHHS--SSSSCBCHHHHHHHHHHHHTTSCGGGTTCEE
T ss_pred             HHhccC--CCCCCcCHHHHHHHHHHHhCcccCCccCCEE
Confidence            111111  1123568999887      333445567665

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.97  E-value=1e-30  Score=224.25  Aligned_cols=194  Identities=18%  Similarity=0.148  Sum_probs=157.0

Q ss_pred             CCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC---cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEcc
Q psy4251          18 HPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS---KLFY--QNCWDKANDAISKILTEKPSAQCIAMELD   92 (292)
Q Consensus        18 ~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g---~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~D   92 (292)
                      .+..++++|+++ ||||+      +|||+++   +.+|++.|   +.|+  .|+.++.+. .+++.+.  +.++.++++|
T Consensus        14 ~~~~~~~~k~vl-ITGas------ggIG~~l---a~~L~~~G~~~~~V~~~~r~~~~~~~-~~~l~~~--~~~~~~~~~D   80 (267)
T 1sny_A           14 LVPRGSHMNSIL-ITGCN------RGLGLGL---VKALLNLPQPPQHLFTTCRNREQAKE-LEDLAKN--HSNIHILEID   80 (267)
T ss_dssp             ------CCSEEE-ESCCS------SHHHHHH---HHHHHTSSSCCSEEEEEESCTTSCHH-HHHHHHH--CTTEEEEECC
T ss_pred             ccccCCCCCEEE-EECCC------CcHHHHH---HHHHHhcCCCCcEEEEEecChhhhHH-HHHhhcc--CCceEEEEec
Confidence            345678999999 99999      9999999   55666777   6665  477655543 3445444  4589999999


Q ss_pred             CCChHHHHHHHHHHHHhCC--CccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc------C-
Q psy4251          93 LCRLKSVKKFAEEYQKKFR--SLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------A-  160 (292)
Q Consensus        93 ls~~~~v~~~~~~~~~~~~--~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~------~-  160 (292)
                      ++|.++++++++++.++++  ++|+||||||+..   +..+.+.++++..+++|+.+++.++++++|.|.++      . 
T Consensus        81 l~~~~~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~  160 (267)
T 1sny_A           81 LRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQP  160 (267)
T ss_dssp             TTCGGGHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             CCChHHHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhccccccccc
Confidence            9999999999999999888  8999999999864   34566788999999999999999999999999865      2 


Q ss_pred             ----CCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCcc
Q psy4251         161 ----KLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWK  236 (292)
Q Consensus       161 ----~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v  236 (292)
                          .  ++||++||..+..+..                .+.+...|++||++++.|+++++.++.++||++++|+||+|
T Consensus       161 ~~~~~--~~iv~isS~~~~~~~~----------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v  222 (267)
T 1sny_A          161 MGVGR--AAIINMSSILGSIQGN----------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWV  222 (267)
T ss_dssp             SSTTT--CEEEEECCGGGCSTTC----------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSB
T ss_pred             ccCCC--ceEEEEecccccccCC----------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcce
Confidence                4  8999999988765431                11145679999999999999999999988999999999999


Q ss_pred             c-ccccc
Q psy4251         237 I-TVSKK  242 (292)
Q Consensus       237 ~-~~~~~  242 (292)
                      + ++.+.
T Consensus       223 ~t~~~~~  229 (267)
T 1sny_A          223 KTDMGGS  229 (267)
T ss_dssp             CSTTTCT
T ss_pred             ecCCCCC
Confidence            9 88643

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.97  E-value=3.9e-30  Score=217.72  Aligned_cols=219  Identities=16%  Similarity=0.125  Sum_probs=168.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++    +  .+.++++|++|.+++
T Consensus         4 ~l~~k~vl-ITGas------ggiG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~~D~~~~~~~   67 (244)
T 3d3w_A            4 FLAGRRVL-VTGAG------KGIGRGT---VQALHATGARVVAVSRTQADLDSLVREC----P--GIEPVCVDLGDWEAT   67 (244)
T ss_dssp             CCTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHS----T--TCEEEECCTTCHHHH
T ss_pred             ccCCcEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHc----C--CCCEEEEeCCCHHHH
Confidence            57899999 99999      9999999   555667777766  48887776655443    1  345679999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~  176 (292)
                      +++++    +++++|+||||||...  +..+.+.++|+..+++|+.+++.++++++|.|.+++ .  ++||++||..+..
T Consensus        68 ~~~~~----~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~--~~iv~~sS~~~~~  141 (244)
T 3d3w_A           68 ERALG----SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVP--GAIVNVSSQCSQR  141 (244)
T ss_dssp             HHHHT----TCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--EEEEEECCGGGTS
T ss_pred             HHHHH----HcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC--cEEEEeCchhhcc
Confidence            88876    5688999999999863  345667889999999999999999999999998765 6  8999999988766


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc-cchhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP-VRTFS  254 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~-~~~~~  254 (292)
                      +.            +       +...|++||++++.+++++++++.+.||++++|+||+|. ++.+........ ..+..
T Consensus       142 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~  202 (244)
T 3d3w_A          142 AV------------T-------NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLN  202 (244)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHH
T ss_pred             CC------------C-------CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHh
Confidence            54            2       678999999999999999999998889999999999999 876543211100 11111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ......++++.|+      .+.....+|+.+
T Consensus       203 ~~--~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  235 (244)
T 3d3w_A          203 RI--PLGKFAEVEHVVNAILFLLSDRSGMTTGSTL  235 (244)
T ss_dssp             TC--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             hC--CCCCCcCHHHHHHHHHHHcCccccCCCCCEE
Confidence            11  1123468898887      333445677755

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.97  E-value=1.4e-30  Score=220.75  Aligned_cols=190  Identities=19%  Similarity=0.198  Sum_probs=151.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ++|+++ ||||+      +|||+++   +.+|++.|  +.|+  .|+.++++++.    +. .+.++.++++|++|.+++
T Consensus         2 ~~k~vl-ItGas------ggiG~~l---a~~l~~~g~~~~V~~~~r~~~~~~~l~----~~-~~~~~~~~~~D~~~~~~~   66 (250)
T 1yo6_A            2 SPGSVV-VTGAN------RGIGLGL---VQQLVKDKNIRHIIATARDVEKATELK----SI-KDSRVHVLPLTVTCDKSL   66 (250)
T ss_dssp             CCSEEE-ESSCS------SHHHHHH---HHHHHTCTTCCEEEEEESSGGGCHHHH----TC-CCTTEEEEECCTTCHHHH
T ss_pred             CCCEEE-EecCC------chHHHHH---HHHHHhcCCCcEEEEEecCHHHHHHHH----hc-cCCceEEEEeecCCHHHH
Confidence            578888 99999      9999999   66677777  6665  47766654432    22 256899999999999999


Q ss_pred             HHHHHHHHHhCC--CccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc------C-----CCC
Q psy4251         100 KKFAEEYQKKFR--SLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------A-----KLF  163 (292)
Q Consensus       100 ~~~~~~~~~~~~--~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~------~-----~~~  163 (292)
                      +++++++.++++  ++|+||||||+..   +..+.+.++++..+++|+.+++.++++++|.|.++      +     .  
T Consensus        67 ~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--  144 (250)
T 1yo6_A           67 DTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSR--  144 (250)
T ss_dssp             HHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTT--
T ss_pred             HHHHHHHHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCC--
Confidence            999999999888  8999999999864   34566788999999999999999999999999776      4     5  


Q ss_pred             cEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         164 ARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       164 ~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      ++||++||..+..+...     .+...       .+...|++||++++.+++++++++.+.||++++|+||+|. ++.+.
T Consensus       145 ~~iv~isS~~~~~~~~~-----~~~~~-------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~  212 (250)
T 1yo6_A          145 AAVITISSGLGSITDNT-----SGSAQ-------FPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK  212 (250)
T ss_dssp             CEEEEECCGGGCSTTCC-----STTSS-------SCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------
T ss_pred             cEEEEeccCccccCCcc-----ccccc-------CCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC
Confidence            89999999987654310     00011       2567899999999999999999999889999999999999 87653

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.97  E-value=1.4e-30  Score=222.06  Aligned_cols=190  Identities=13%  Similarity=0.086  Sum_probs=161.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNC-WDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+ .+++++..+++...  +.++.++++|++|.++
T Consensus         4 ~l~~k~vl-VTGas------ggiG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~   71 (258)
T 3afn_B            4 DLKGKRVL-ITGSS------QGIGLAT---ARLFARAGAKVGLHGRKAPANIDETIASMRAD--GGDAAFFAADLATSEA   71 (258)
T ss_dssp             GGTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT--TCEEEEEECCTTSHHH
T ss_pred             CCCCCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEECCCchhhHHHHHHHHHhc--CCceEEEECCCCCHHH
Confidence            46789999 99999      9999999   555667787776  477 77788888888765  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccc-cC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC---CCCcEEEEEcCc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGV-FG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA---KLFARVVVVSSE  172 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~-~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~---~~~~~iV~vsS~  172 (292)
                      ++++++++.++++++|+||||||. ..  +..+.+.++++..+++|+.+++.++++++|.|.++.   .+.++||++||.
T Consensus        72 ~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  151 (258)
T 3afn_B           72 CQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSI  151 (258)
T ss_dssp             HHHHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCT
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecch
Confidence            999999999999999999999997 32  345667888999999999999999999999986432   111799999998


Q ss_pred             cccc-ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         173 SHRY-SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      .+.. +.            +       +...|++||++++.+++++++++.+.||++++|+||++. ++.+.
T Consensus       152 ~~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~  204 (258)
T 3afn_B          152 AGHTGGG------------P-------GAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHAD  204 (258)
T ss_dssp             HHHHCCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTT
T ss_pred             hhccCCC------------C-------CchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccc
Confidence            7765 33            2       677899999999999999999999889999999999999 87654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.97  E-value=3.6e-30  Score=216.64  Aligned_cols=182  Identities=14%  Similarity=0.056  Sum_probs=151.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+|+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++      .++.++++|++|.+++++
T Consensus         4 ~~k~vl-VtGas------ggiG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~   67 (234)
T 2ehd_A            4 MKGAVL-ITGAS------RGIGEAT---ARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVREEGDWAR   67 (234)
T ss_dssp             CCCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHH
T ss_pred             CCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHh------hhceEEEecCCCHHHHHH
Confidence            467888 99999      9999999   555667787776  48887776665543      167889999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++.+.++++|+||||||+..  +..+.+.++|+..+++|+.+++.+++.++|.|.+++.  ++||++||..+..+. 
T Consensus        68 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~--~~iv~isS~~~~~~~-  144 (234)
T 2ehd_A           68 AVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGG--GTIVNVGSLAGKNPF-  144 (234)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC--EEEEEECCTTTTSCC-
T ss_pred             HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC--cEEEEECCchhcCCC-
Confidence            99999999999999999999863  3456788899999999999999999999999988766  999999998776543 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                                 +       +...|+++|++++.++++++.++.+.||++++|+||++. ++.+.
T Consensus       145 -----------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~  190 (234)
T 2ehd_A          145 -----------K-------GGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN  190 (234)
T ss_dssp             -----------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC---------
T ss_pred             -----------C-------CCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc
Confidence                       2       677999999999999999999999889999999999999 87654

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.97  E-value=3e-30  Score=221.79  Aligned_cols=229  Identities=21%  Similarity=0.161  Sum_probs=172.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhh-cCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQ-SSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~-~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++|+++ ||||+      +|||+++   +..|++ .|+.|+  .|+.+++++..+++.+.  +.++.++++|++|.++++
T Consensus         3 ~~k~vl-ITGas------ggIG~~~---a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~~~   70 (276)
T 1wma_A            3 GIHVAL-VTGGN------KGIGLAI---VRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIR   70 (276)
T ss_dssp             CCCEEE-ESSCS------SHHHHHH---HHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHH
T ss_pred             CCCEEE-EeCCC------cHHHHHH---HHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc--CCeeEEEECCCCCHHHHH
Confidence            578888 99999      9999999   555666 677665  58988888888888765  467899999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCC-CCCC-CcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLG-FSHT-EDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~-~~~~-~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.++++++|+||||||+.... ...+ .++++..+++|+.++++++++++|.|.+  .  ++||++||..+..+.
T Consensus        71 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~--g~iv~~sS~~~~~~~  146 (276)
T 1wma_A           71 ALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--Q--GRVVNVSSIMSVRAL  146 (276)
T ss_dssp             HHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE--E--EEEEEECCHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCC--C--CEEEEECChhhhccc
Confidence            99999999999999999999987432 2223 4789999999999999999999998864  3  899999998776431


Q ss_pred             CC----------CCCCCccccC------------cCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC----CCeEEEEec
Q psy4251         179 IT----------KDTISKSVLS------------VENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK----YKIALSSRH  232 (292)
Q Consensus       179 ~~----------~~~~~~~~~~------------~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~----~gi~v~~v~  232 (292)
                      ..          ...+..+++.            ........+...|++||++++.+++++++++.+    .||+|++|+
T Consensus       147 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~  226 (276)
T 1wma_A          147 KSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACC  226 (276)
T ss_dssp             HTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEE
T ss_pred             ccCChhHHhhccccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEec
Confidence            00          0000000000            000000012378999999999999999999976    699999999


Q ss_pred             CCccc-cccccccccCCccchhhhhhccccccCCHHHhhc-------ccc-cCCCCCccccCC
Q psy4251         233 CCWKI-TVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTG-------TAE-KVGLSGLPDSEW  286 (292)
Q Consensus       233 PG~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-------~~~-~~~~~G~~~~~~  286 (292)
                      ||+|. ++.+..                  ...+|++.|.       .+. ....+|+++.++
T Consensus       227 PG~v~t~~~~~~------------------~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~~~  271 (276)
T 1wma_A          227 PGWVRTDMAGPK------------------ATKSPEEGAETPVYLALLPPDAEGPHGQFVSEK  271 (276)
T ss_dssp             CCSBCSTTTCTT------------------CSBCHHHHTHHHHHHHSCCTTCCCCCSCEEETT
T ss_pred             CCccccCcCCcc------------------ccCChhHhhhhHhhhhcCcccccccCceEeccC
Confidence            99999 876541                  1247888776       232 346799988653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.97  E-value=2.9e-30  Score=222.09  Aligned_cols=187  Identities=16%  Similarity=0.174  Sum_probs=162.3

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--Ec-CHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QN-CWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r-~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .| +.+++++..+++.+.  +.++.++++|++|.
T Consensus        16 ~~~~~~k~vl-ItGas------ggiG~~l---a~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~   83 (274)
T 1ja9_A           16 SKPLAGKVAL-TTGAG------RGIGRGI---AIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKP   83 (274)
T ss_dssp             CCTTTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSH
T ss_pred             CCCCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc--CCcEEEEEecCCCH
Confidence            4668999999 99999      9999999   555667787766  47 788888888888765  56789999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++++.++++++|+||||||+..  +..+.+.++|+..+++|+.+++.++++++|.|.+  .  ++||++||..+
T Consensus        84 ~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~--~~iv~~sS~~~  159 (274)
T 1ja9_A           84 SEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR--G--GRIILTSSIAA  159 (274)
T ss_dssp             HHHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE--E--EEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--C--CEEEEEcChHh
Confidence            9999999999999999999999999863  3456788899999999999999999999999862  3  89999999877


Q ss_pred             c-cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         175 R-YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       175 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      . .+.            +       +...|++||++++.+++++++++...||++++++||++. ++.+
T Consensus       160 ~~~~~------------~-------~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~  209 (274)
T 1ja9_A          160 VMTGI------------P-------NHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFD  209 (274)
T ss_dssp             TCCSC------------C-------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHH
T ss_pred             ccCCC------------C-------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchh
Confidence            6 332            2       567899999999999999999999889999999999999 7765

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.97  E-value=5e-31  Score=223.06  Aligned_cols=206  Identities=9%  Similarity=-0.056  Sum_probs=164.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ..++|+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++.+            ....++++|++|.+++
T Consensus         4 ~~~~k~vl-VTGas------~gIG~~i---a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v   61 (241)
T 1dhr_A            4 SGEARRVL-VYGGR------GALGSRC---VQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQA   61 (241)
T ss_dssp             --CCCEEE-EETTT------SHHHHHH---HHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHH
T ss_pred             cCCCCEEE-EECCC------cHHHHHH---HHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHH
Confidence            35688998 99999      9999999   6667788888764  6643321            2457789999999999


Q ss_pred             HHHHHHHHHhC--CCccEEEEcccccC--CC-CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         100 KKFAEEYQKKF--RSLNILVLNAGVFG--LG-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       100 ~~~~~~~~~~~--~~id~lI~nAg~~~--~~-~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +++++++.+++  +++|+||||||+..  +. .+.+.++|++.+++|+.+++.++++++|.|.+  .  ++||++||..+
T Consensus        62 ~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~--g~iv~isS~~~  137 (241)
T 1dhr_A           62 DQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE--G--GLLTLAGAKAA  137 (241)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--E--EEEEEECCGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc--C--CEEEEECCHHH
Confidence            99999999998  79999999999863  33 56678899999999999999999999999864  3  89999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      ..+.            +       +...|++||++++.|+++++.++.  ++||+||+|+||+|+ ++.+.....   ..
T Consensus       138 ~~~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~~~~~~~---~~  195 (241)
T 1dhr_A          138 LDGT------------P-------GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPE---AD  195 (241)
T ss_dssp             GSCC------------T-------TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTT---SC
T ss_pred             ccCC------------C-------CchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccccccCcc---hh
Confidence            7654            2       678999999999999999999998  889999999999999 886653211   01


Q ss_pred             hhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         252 TFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +.        ...++++.|.      ++.....+|+++
T Consensus       196 ~~--------~~~~~~~vA~~v~~l~~~~~~~~~G~~~  225 (241)
T 1dhr_A          196 FS--------SWTPLEFLVETFHDWITGNKRPNSGSLI  225 (241)
T ss_dssp             GG--------GSEEHHHHHHHHHHHHTTTTCCCTTCEE
T ss_pred             hc--------cCCCHHHHHHHHHHHhcCCCcCccceEE
Confidence            11        1235677776      444556677765

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.97  E-value=5.6e-31  Score=232.45  Aligned_cols=187  Identities=19%  Similarity=0.154  Sum_probs=148.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCHH---HHHHHHHHHHh-hCCCCceEEEEccCCChH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCWD---KANDAISKILT-EKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~~---~~~~~~~~l~~-~~~~~~~~~~~~Dls~~~   97 (292)
                      +||+++ ||||+      +|||+++   +.+|++.|+.|  +.|+.+   ...+..+++.. ..++.++.++++|++|.+
T Consensus         1 ~~k~vl-VTGas------~GIG~al---a~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~   70 (327)
T 1jtv_A            1 ARTVVL-ITGCS------SGIGLHL---AVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSK   70 (327)
T ss_dssp             CCEEEE-ESCCS------SHHHHHH---HHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHH
T ss_pred             CCCEEE-EECCC------CHHHHHH---HHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHH
Confidence            367888 99999      9999999   56666777543  334432   23333333221 122457899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.  ++++|+||||||+.  .+..+.+.++|++.+++|+.++++++++++|.|.++..  ++||++||..+.
T Consensus        71 ~v~~~~~~~~--~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~--g~IV~isS~~~~  146 (327)
T 1jtv_A           71 SVAAARERVT--EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS--GRVLVTGSVGGL  146 (327)
T ss_dssp             HHHHHHHTCT--TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEEEEGGGT
T ss_pred             HHHHHHHHHh--cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CEEEEECCcccc
Confidence            9999999883  58999999999986  34566788999999999999999999999999987766  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+.            +       ....|++||++++.|+++++.|+.+.||+||+|+||+|+ ++.+..
T Consensus       147 ~~~------------~-------~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~  196 (327)
T 1jtv_A          147 MGL------------P-------FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKV  196 (327)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------
T ss_pred             cCC------------C-------CChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhh
Confidence            654            2       577999999999999999999999999999999999999 887653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.97  E-value=3.7e-30  Score=218.79  Aligned_cols=216  Identities=16%  Similarity=0.077  Sum_probs=162.0

Q ss_pred             CCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          17 LHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        17 ~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      +++..+++||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+..    +++     + ++.++ +|+ 
T Consensus        11 ~~~~~~~~~k~vl-VTGas------~gIG~~~---a~~l~~~G~~V~~~~r~~~~~----~~~-----~-~~~~~-~D~-   68 (249)
T 1o5i_A           11 HHMELGIRDKGVL-VLAAS------RGIGRAV---ADVLSQEGAEVTICARNEELL----KRS-----G-HRYVV-CDL-   68 (249)
T ss_dssp             -----CCTTCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHH----HHT-----C-SEEEE-CCT-
T ss_pred             hhHHhccCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEcCCHHHH----Hhh-----C-CeEEE-eeH-
Confidence            4445789999999 99999      9999999   556667787776  4776332    222     2 56677 999 


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                       .++++++++++.    ++|+||||||+..  +..+.+.++|+..+++|+.+++.++++++|.|.+++.  ++||++||.
T Consensus        69 -~~~~~~~~~~~~----~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~--g~iv~isS~  141 (249)
T 1o5i_A           69 -RKDLDLLFEKVK----EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGW--GRIVAITSF  141 (249)
T ss_dssp             -TTCHHHHHHHSC----CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCG
T ss_pred             -HHHHHHHHHHhc----CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence             567777776653    7999999999863  3466788999999999999999999999999988777  999999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCcc-
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPV-  250 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~-  250 (292)
                      .+..+.            +       +...|++||+++..|+++++.++.+.||+||+|+||++. ++.+..... ... 
T Consensus       142 ~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~  201 (249)
T 1o5i_A          142 SVISPI------------E-------NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSE-EKKK  201 (249)
T ss_dssp             GGTSCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCH-HHHH
T ss_pred             HhcCCC------------C-------CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccchh-hHHH
Confidence            877654            2       678999999999999999999999899999999999999 886543211 000 


Q ss_pred             chhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+....  ......+|++.|.      ++.....+|+.+
T Consensus       202 ~~~~~~--p~~~~~~~~dvA~~i~~l~s~~~~~~tG~~~  238 (249)
T 1o5i_A          202 QVESQI--PMRRMAKPEEIASVVAFLCSEKASYLTGQTI  238 (249)
T ss_dssp             HHHTTS--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHhcC--CCCCCcCHHHHHHHHHHHcCccccCCCCCEE
Confidence            111111  1122458999887      444556678765

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.97  E-value=2.4e-30  Score=229.70  Aligned_cols=189  Identities=6%  Similarity=-0.137  Sum_probs=153.5

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhh-cCcEEEE--cCHHHH------------HHHHHHHHhhCCCCceE
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQ-SSKLFYQ--NCWDKA------------NDAISKILTEKPSAQCI   87 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~-~g~~v~~--r~~~~~------------~~~~~~l~~~~~~~~~~   87 (292)
                      ..||+++ ||||+      +|||+++   +..|+. .|+.|++  ++.+..            +.+.+.+.+.  +.++.
T Consensus        45 ~~gKvaL-VTGas------~GIG~Ai---A~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~--G~~a~  112 (405)
T 3zu3_A           45 NGPKRVL-VIGAS------TGYGLAA---RITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQK--GLYAK  112 (405)
T ss_dssp             TCCSEEE-EESCS------SHHHHHH---HHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHT--TCCEE
T ss_pred             CCCCEEE-EeCcc------hHHHHHH---HHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhc--CCceE
Confidence            4578888 99999      9999999   666777 8887763  543321            1223344444  56889


Q ss_pred             EEEccCCChHHHHHHHHHHHHhCCCccEEEEccccc---------------CCC---------------------CCCCC
Q psy4251          88 AMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---------------GLG---------------------FSHTE  131 (292)
Q Consensus        88 ~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~---------------~~~---------------------~~~~~  131 (292)
                      .+++|++|.++++++++++.+++|+||+||||||..               .+.                     .+.+.
T Consensus       113 ~i~~Dvtd~~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~  192 (405)
T 3zu3_A          113 SINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQ  192 (405)
T ss_dssp             EEESCTTSHHHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCH
Confidence            999999999999999999999999999999999974               122                     45688


Q ss_pred             cchhhhhhhhhhHHH-HHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhh--hHHHHhHH
Q psy4251         132 DGFETTFQVNHLAHF-YLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAM--TAYNDTKL  208 (292)
Q Consensus       132 ~~~~~~~~vN~~~~~-~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sK~  208 (292)
                      ++|++++++|..+.+ ++++++++.......  |+||++||..+..+.            +       ..  .+|++||+
T Consensus       193 ee~~~~v~Vn~~~~~~~~~~~~~~~~m~~~g--G~IVniSSi~~~~~~------------p-------~~~~~aY~AaKa  251 (405)
T 3zu3_A          193 SEIDSTVAVMGGEDWQMWIDALLDAGVLAEG--AQTTAFTYLGEKITH------------D-------IYWNGSIGAAKK  251 (405)
T ss_dssp             HHHHHHHHHHSSHHHHHHHHHHHHHTCEEEE--EEEEEEECCCCGGGT------------T-------TTTTSHHHHHHH
T ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHhhhhCC--cEEEEEeCchhhCcC------------C-------CccchHHHHHHH
Confidence            999999999999998 788887754322334  899999999887654            2       44  78999999


Q ss_pred             HHHHHHHHHHhHhcCC-CeEEEEecCCccc-ccccccc
Q psy4251         209 CNVLFGEKLATLWYKY-KIALSSRHCCWKI-TVSKKWW  244 (292)
Q Consensus       209 a~~~~~~~la~~~~~~-gi~v~~v~PG~v~-~~~~~~~  244 (292)
                      ++..|++++|.|+++. |||||+|+||.|. ++....+
T Consensus       252 al~~ltrsLA~Ela~~~GIRVNaVaPG~i~T~~s~~ip  289 (405)
T 3zu3_A          252 DLDQKVLAIRESLAAHGGGDARVSVLKAVVSQASSAIP  289 (405)
T ss_dssp             HHHHHHHHHHHHHHTTTSCEEEEEECCCCCCHHHHTST
T ss_pred             HHHHHHHHHHHHhCcccCeEEEEEEeCCCcCchhhcCC
Confidence            9999999999999999 9999999999999 8876653

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.97  E-value=1.2e-30  Score=222.11  Aligned_cols=208  Identities=12%  Similarity=-0.043  Sum_probs=164.7

Q ss_pred             CCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          18 HPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        18 ~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      ++..+..||+++ ||||+      +|||+++   +.+|+++|+.|++  |+.++.              .-..+.+|++|
T Consensus        15 ~~~~~~m~k~vl-ITGas------~gIG~~l---a~~l~~~G~~V~~~~r~~~~~--------------~~~~~~~d~~d   70 (251)
T 3orf_A           15 VPRGSHMSKNIL-VLGGS------GALGAEV---VKFFKSKSWNTISIDFRENPN--------------ADHSFTIKDSG   70 (251)
T ss_dssp             -------CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCCTT--------------SSEEEECSCSS
T ss_pred             cccccccCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCcccc--------------cccceEEEeCC
Confidence            344556689999 99999      9999999   6667778877764  654321              22457899999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCC---CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGL---GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~---~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      .++++++++++.++++++|+||||||+...   ..+.+.+++++.+++|+.+++.++++++|.|++  .  ++||++||.
T Consensus        71 ~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~--g~iv~isS~  146 (251)
T 3orf_A           71 EEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ--G--GLFVLTGAS  146 (251)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--E--EEEEEECCG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhcc--C--CEEEEEech
Confidence            999999999999999999999999998642   456778899999999999999999999999865  3  899999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-cccccccccCCc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      .+..+.            +       +...|++||++++.|+++++.++.  +.||+||+|+||+|+ ++.+......  
T Consensus       147 ~~~~~~------------~-------~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~--  205 (251)
T 3orf_A          147 AALNRT------------S-------GMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRKYMSDA--  205 (251)
T ss_dssp             GGGSCC------------T-------TBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHHHHHCTTS--
T ss_pred             hhccCC------------C-------CCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcchhhhcccc--
Confidence            887654            2       678999999999999999999986  789999999999999 8876643321  


Q ss_pred             cchhhhhhccccccCCHHHhhc------cc-ccCCCCCccc
Q psy4251         250 VRTFSWISRVRPVTNFQVDLTG------TA-EKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~a~------~~-~~~~~~G~~~  283 (292)
                       .        .....++++.|+      .. .....+|+.+
T Consensus       206 -~--------~~~~~~~~dva~~i~~l~~~~~~~~~tG~~i  237 (251)
T 3orf_A          206 -N--------FDDWTPLSEVAEKLFEWSTNSDSRPTNGSLV  237 (251)
T ss_dssp             -C--------GGGSBCHHHHHHHHHHHHHCGGGCCCTTCEE
T ss_pred             -c--------ccccCCHHHHHHHHHHHhcCccccCCcceEE
Confidence             1        112357888887      33 5567788866

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.97  E-value=1.1e-30  Score=233.97  Aligned_cols=188  Identities=11%  Similarity=-0.064  Sum_probs=153.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhh-cCcEEEE--cCHHHHH------------HHHHHHHhhCCCCceEE
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQ-SSKLFYQ--NCWDKAN------------DAISKILTEKPSAQCIA   88 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~-~g~~v~~--r~~~~~~------------~~~~~l~~~~~~~~~~~   88 (292)
                      .||+++ ||||+      +|||+++   +..|+. .|+.|++  |+.+.++            .+.+++.+.  +.++..
T Consensus        60 ~gKvaL-VTGAS------sGIG~Ai---A~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~--G~~a~~  127 (422)
T 3s8m_A           60 GPKKVL-VIGAS------SGYGLAS---RITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA--GLYSKS  127 (422)
T ss_dssp             SCSEEE-EESCS------SHHHHHH---HHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT--TCCEEE
T ss_pred             CCCEEE-EECCC------hHHHHHH---HHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc--CCcEEE
Confidence            588888 99999      9999999   666777 8887763  5533322            233455544  668899


Q ss_pred             EEccCCChHHHHHHHHHHHHhC-CCccEEEEccccc---------------CCC---------------------CCCCC
Q psy4251          89 MELDLCRLKSVKKFAEEYQKKF-RSLNILVLNAGVF---------------GLG---------------------FSHTE  131 (292)
Q Consensus        89 ~~~Dls~~~~v~~~~~~~~~~~-~~id~lI~nAg~~---------------~~~---------------------~~~~~  131 (292)
                      +++|++|.++++++++++.+++ |+||+||||||..               .+.                     .+.+.
T Consensus       128 i~~Dvtd~~~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~  207 (422)
T 3s8m_A          128 INGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASA  207 (422)
T ss_dssp             EESCTTSHHHHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCH
T ss_pred             EEecCCCHHHHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCH
Confidence            9999999999999999999999 9999999999872               122                     24688


Q ss_pred             cchhhhhhhhhhHHH-HHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhh--hHHHHhHH
Q psy4251         132 DGFETTFQVNHLAHF-YLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAM--TAYNDTKL  208 (292)
Q Consensus       132 ~~~~~~~~vN~~~~~-~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sK~  208 (292)
                      ++|+.++++|..+.+ ++++++++.+...+.  |+||++||.++..+.            +       ..  .+|++||+
T Consensus       208 e~~~~~v~Vn~~~~~~~~~~a~~~~~m~~~g--G~IVniSSi~g~~~~------------p-------~~~~~aY~ASKa  266 (422)
T 3s8m_A          208 QEIEDTITVMGGQDWELWIDALEGAGVLADG--ARSVAFSYIGTEITW------------P-------IYWHGALGKAKV  266 (422)
T ss_dssp             HHHHHHHHHHSSHHHHHHHHHHHHTTCEEEE--EEEEEEEECCCGGGH------------H-------HHTSHHHHHHHH
T ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHhhCC--CEEEEEeCchhhccC------------C-------CccchHHHHHHH
Confidence            899999999999997 888887764333334  899999999877654            2       45  78999999


Q ss_pred             HHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccc
Q psy4251         209 CNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWW  244 (292)
Q Consensus       209 a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~  244 (292)
                      ++.+|+++||.|+.++|||||+|+||+|. ++....+
T Consensus       267 Al~~lTrsLA~Ela~~GIRVNaVaPG~i~T~~~~~ip  303 (422)
T 3s8m_A          267 DLDRTAQRLNARLAKHGGGANVAVLKSVVTQASAAIP  303 (422)
T ss_dssp             HHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGST
T ss_pred             HHHHHHHHHHHHhCccCEEEEEEEcCCCcChhhhcCC
Confidence            99999999999999999999999999999 8887653

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.97  E-value=1.4e-30  Score=219.59  Aligned_cols=204  Identities=9%  Similarity=-0.056  Sum_probs=164.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++.+            ....++++|++|.+++++
T Consensus         2 ~~k~vl-ITGas------~gIG~~~---a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~   59 (236)
T 1ooe_A            2 SSGKVI-VYGGK------GALGSAI---LEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQS   59 (236)
T ss_dssp             CCEEEE-EETTT------SHHHHHH---HHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHH
T ss_pred             CCCEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHH
Confidence            578888 99999      9999999   6667777877764  6643321            245778999999999999


Q ss_pred             HHHHHHHhC--CCccEEEEcccccC--CC-CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         102 FAEEYQKKF--RSLNILVLNAGVFG--LG-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       102 ~~~~~~~~~--~~id~lI~nAg~~~--~~-~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++.+++  +++|+||||||+..  +. .+.+.++|++.+++|+.+++.++++++|.|.+  .  ++||++||..+..
T Consensus        60 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~--g~iv~isS~~~~~  135 (236)
T 1ooe_A           60 ILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP--G--GLLQLTGAAAAMG  135 (236)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--E--EEEEEECCGGGGS
T ss_pred             HHHHHHHHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--C--CEEEEECchhhcc
Confidence            999999988  79999999999863  33 56678899999999999999999999999864  3  8999999998776


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      +.            +       +...|++||++++.|+++++.++.  +.||+||+|+||+++ ++.+.....   ..+.
T Consensus       136 ~~------------~-------~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~~~  193 (236)
T 1ooe_A          136 PT------------P-------SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPN---ADHS  193 (236)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHSTT---CCGG
T ss_pred             CC------------C-------CcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcchhhcCCC---cccc
Confidence            54            2       678999999999999999999998  889999999999999 886653211   0111


Q ss_pred             hhhhccccccCCHHHhhc-------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG-------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~-------~~~~~~~~G~~~  283 (292)
                              ...++++.|.       ++.....+|+++
T Consensus       194 --------~~~~~~dvA~~i~~~l~s~~~~~~~G~~~  222 (236)
T 1ooe_A          194 --------SWTPLSFISEHLLKWTTETSSRPSSGALL  222 (236)
T ss_dssp             --------GCBCHHHHHHHHHHHHHCGGGCCCTTCEE
T ss_pred             --------ccCCHHHHHHHHHHHHcCCCcccccccEE
Confidence                    1246787776       445667788876

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.97  E-value=1.1e-30  Score=221.36  Aligned_cols=202  Identities=13%  Similarity=0.051  Sum_probs=138.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++|+   +|++ |..|+  .|+.+++++..+       ..++.++++|+++.++ 
T Consensus         2 ~l~~k~vl-ITGas------~gIG~~~a~---~l~~-g~~v~~~~r~~~~~~~~~~-------~~~~~~~~~D~~~~~~-   62 (245)
T 3e9n_A            2 SLKKKIAV-VTGAT------GGMGIEIVK---DLSR-DHIVYALGRNPEHLAALAE-------IEGVEPIESDIVKEVL-   62 (245)
T ss_dssp             ----CEEE-EESTT------SHHHHHHHH---HHTT-TSEEEEEESCHHHHHHHHT-------STTEEEEECCHHHHHH-
T ss_pred             CCCCCEEE-EEcCC------CHHHHHHHH---HHhC-CCeEEEEeCCHHHHHHHHh-------hcCCcceecccchHHH-
Confidence            46799999 99999      999999954   4555 55554  488877665443       1368899999999877 


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .+.+.+..++++++|+||||||+..  +..+.+.++|++.+++|+.+++.++++++|.|.++.   ++||++||..+..+
T Consensus        63 ~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---g~iv~isS~~~~~~  139 (245)
T 3e9n_A           63 EEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS---GCVIYINSGAGNGP  139 (245)
T ss_dssp             TSSSCGGGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEEC-------
T ss_pred             HHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CeEEEEcCcccccC
Confidence            5555555667889999999999874  455678899999999999999999999999997654   89999999988766


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +...|++||++++.|+++++.++.++||+||+|+||+|. ++.+.......     ...
T Consensus       140 ~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~-----~~~  195 (245)
T 3e9n_A          140 H------------P-------GNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDSQG-----TNF  195 (245)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------
T ss_pred             C------------C-------CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhhhh-----ccc
Confidence            4            2       678999999999999999999999999999999999999 88776532100     011


Q ss_pred             hccccccCCHHHhhc
Q psy4251         257 SRVRPVTNFQVDLTG  271 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~  271 (292)
                        ......+|++.|+
T Consensus       196 --~~~~~~~p~dvA~  208 (245)
T 3e9n_A          196 --RPEIYIEPKEIAN  208 (245)
T ss_dssp             --CCGGGSCHHHHHH
T ss_pred             --ccccCCCHHHHHH
Confidence              1123468888887

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.97  E-value=2.1e-29  Score=213.11  Aligned_cols=219  Identities=17%  Similarity=0.138  Sum_probs=167.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++    +  .+.++++|++|.++
T Consensus         3 ~~~~~~~vl-VTGas------ggiG~~~---a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~--~~~~~~~D~~~~~~   66 (244)
T 1cyd_A            3 LNFSGLRAL-VTGAG------KGIGRDT---VKALHASGAKVVAVTRTNSDLVSLAKEC----P--GIEPVCVDLGDWDA   66 (244)
T ss_dssp             CCCTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHS----T--TCEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EeCCC------chHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHhc----c--CCCcEEecCCCHHH
Confidence            357899999 99999      9999999   666667787776  48877766555432    1  35667999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      ++++++    .++++|+||||||...  +..+.+.++++..+++|+.+++.++++++|.|.+++ .  ++||++||..+.
T Consensus        67 ~~~~~~----~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~--~~iv~~sS~~~~  140 (244)
T 1cyd_A           67 TEKALG----GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVP--GSIVNVSSMVAH  140 (244)
T ss_dssp             HHHHHT----TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--EEEEEECCGGGT
T ss_pred             HHHHHH----HcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCC--eEEEEEcchhhc
Confidence            988876    5688999999999863  345678889999999999999999999999998765 6  899999998876


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       +...|++||++++.+++++++++...||++++|+||++. ++.+.....   ..+..
T Consensus       141 ~~~------------~-------~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~---~~~~~  198 (244)
T 1cyd_A          141 VTF------------P-------NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSAD---PEFAR  198 (244)
T ss_dssp             SCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCC---HHHHH
T ss_pred             CCC------------C-------CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccC---HHHHH
Confidence            654            2       577899999999999999999999889999999999999 776532111   11111


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+..  ...-..++++.|+      .+.....+|+.+
T Consensus       199 ~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  235 (244)
T 1cyd_A          199 KLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGI  235 (244)
T ss_dssp             HHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSSEE
T ss_pred             HHHhcCCccCCCCHHHHHHHHHHHhCchhhcccCCEE
Confidence            1100  1123468888887      344445667654

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.97  E-value=4.4e-30  Score=214.71  Aligned_cols=200  Identities=12%  Similarity=0.030  Sum_probs=157.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+                      +|++|++++
T Consensus         3 ~~~~k~vl-VTGas------~gIG~~~---a~~l~~~G~~V~~~~r~~~----------------------~D~~~~~~v   50 (223)
T 3uce_A            3 GSDKTVYV-VLGGT------SGIGAEL---AKQLESEHTIVHVASRQTG----------------------LDISDEKSV   50 (223)
T ss_dssp             --CCEEEE-EETTT------SHHHHHH---HHHHCSTTEEEEEESGGGT----------------------CCTTCHHHH
T ss_pred             CCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEecCCcc----------------------cCCCCHHHH
Confidence            46789999 99999      9999999   6778888988876  3321                      899999999


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc---CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++    +++|+||||||+.   .+..+.+.++|++.+++|+.++++++++++|.|++  .  ++||++||..+..
T Consensus        51 ~~~~~~~----g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~--g~iv~~sS~~~~~  122 (223)
T 3uce_A           51 YHYFETI----GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQ--G--GSITLTSGMLSRK  122 (223)
T ss_dssp             HHHHHHH----CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEE--E--EEEEEECCGGGTS
T ss_pred             HHHHHHh----CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccC--C--eEEEEecchhhcc
Confidence            9998876    7899999999986   34567889999999999999999999999999865  3  8999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +...|++||++++.|++++++|+.+  |+||+|+||+|. ++.+..... ....+...
T Consensus       123 ~~------------~-------~~~~Y~asK~a~~~~~~~la~e~~~--i~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~  180 (223)
T 3uce_A          123 VV------------A-------NTYVKAAINAAIEATTKVLAKELAP--IRVNAISPGLTKTEAYKGMNAD-DRDAMYQR  180 (223)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHTT--SEEEEEEECSBCSGGGTTSCHH-HHHHHHHH
T ss_pred             CC------------C-------CchHHHHHHHHHHHHHHHHHHhhcC--cEEEEEEeCCCcchhhhhcchh-hHHHHHHH
Confidence            54            2       6789999999999999999999987  999999999999 887664321 01111111


Q ss_pred             hhc--cccccCCHHHhhc----ccccCCCCCccc
Q psy4251         256 ISR--VRPVTNFQVDLTG----TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~--~~~~~~~~~~~a~----~~~~~~~~G~~~  283 (292)
                      ...  ......+|++.|+    .......+|+.+
T Consensus       181 ~~~~~~~~~~~~~~dvA~~~~~l~~~~~~tG~~i  214 (223)
T 3uce_A          181 TQSHLPVGKVGEASDIAMAYLFAIQNSYMTGTVI  214 (223)
T ss_dssp             HHHHSTTCSCBCHHHHHHHHHHHHHCTTCCSCEE
T ss_pred             HhhcCCCCCccCHHHHHHHHHHHccCCCCCCcEE
Confidence            111  2223568999887    222456677765

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.96  E-value=3.3e-30  Score=226.48  Aligned_cols=230  Identities=11%  Similarity=-0.011  Sum_probs=164.1

Q ss_pred             CCCCCceEEEEcCC--CCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH------HH-HHHHHHHHhhCCCC---ce
Q psy4251          21 STYNGCLAILCTGD--MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD------KA-NDAISKILTEKPSA---QC   86 (292)
Q Consensus        21 ~~l~g~~~vlItGa--~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~------~~-~~~~~~l~~~~~~~---~~   86 (292)
                      .+++||+++ ||||  +      +|||+++   +.+|++.|+.|+.  |+..      .. ++..+++.+...+.   .+
T Consensus         5 ~~l~gk~~l-VTGa~~s------~GIG~ai---a~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (315)
T 2o2s_A            5 IDLRGQTAF-VAGVADS------HGYGWAI---AKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFA   74 (315)
T ss_dssp             CCCTTCEEE-EECCSSS------SSHHHHH---HHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCS
T ss_pred             ccCCCCEEE-EeCCCCC------CChHHHH---HHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccc
Confidence            457899999 9999  9      9999999   6667788888764  4321      01 01112222211111   12


Q ss_pred             EEEEcc------------CC--------ChHHHHHHHHHHHHhCCCccEEEEccccc----CCCCCCCCcchhhhhhhhh
Q psy4251          87 IAMELD------------LC--------RLKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNH  142 (292)
Q Consensus        87 ~~~~~D------------ls--------~~~~v~~~~~~~~~~~~~id~lI~nAg~~----~~~~~~~~~~~~~~~~vN~  142 (292)
                      .++.+|            ++        |.++++++++++.+++++||+||||||+.    .+..+.+.++|+..+++|+
T Consensus        75 ~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~  154 (315)
T 2o2s_A           75 GVYPLDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSA  154 (315)
T ss_dssp             CEEECCTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred             ccccccccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhh
Confidence            344444            33        36689999999999999999999999975    3456778899999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhh-hHHHHhHHHHHHHHHHHHhHh
Q psy4251         143 LAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAM-TAYNDTKLCNVLFGEKLATLW  221 (292)
Q Consensus       143 ~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~la~~~  221 (292)
                      .++++++++++|.|.+  .  ++||++||..+..+.            +       +. ..|++||+++..|+++++.|+
T Consensus       155 ~g~~~l~~~~~~~m~~--~--g~Iv~isS~~~~~~~------------~-------~~~~~Y~asKaal~~l~~~la~el  211 (315)
T 2o2s_A          155 YSFVSLLQHFGPIMNE--G--GSAVTLSYLAAERVV------------P-------GYGGGMSSAKAALESDTRTLAWEA  211 (315)
T ss_dssp             HHHHHHHHHHSTTEEE--E--EEEEEEEEGGGTSCC------------T-------TCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--C--CEEEEEecccccccC------------C-------CccHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999965  3  899999999877654            2       34 479999999999999999999


Q ss_pred             cC-CCeEEEEecCCccc-cccccccccCCc---cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         222 YK-YKIALSSRHCCWKI-TVSKKWWRFGTP---VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       222 ~~-~gi~v~~v~PG~v~-~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+ +||+||+|+||+|+ ++.+........   ..+......  ......+|++.|.      ++.....+|+.+
T Consensus       212 ~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i  286 (315)
T 2o2s_A          212 GQKYGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLSPLARAVSGVTL  286 (315)
T ss_dssp             HHHTCCEEEEEEECCCCCHHHHHTTCSSSSCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             CcccCeEEEEEecccccchhhhhccccccchhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCchhccCcCCEE
Confidence            74 79999999999999 886543211000   011111100  1123568999987      555667788766

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.96  E-value=2.9e-30  Score=227.26  Aligned_cols=230  Identities=10%  Similarity=-0.028  Sum_probs=141.6

Q ss_pred             CCCCCceEEEEcCC--CCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH-----------HHHH-----------HHH
Q psy4251          21 STYNGCLAILCTGD--MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW-----------DKAN-----------DAI   74 (292)
Q Consensus        21 ~~l~g~~~vlItGa--~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~-----------~~~~-----------~~~   74 (292)
                      .+++||+++ ||||  +      +|||+++   +..|++.|+.|+.  |+.           ++++           ++.
T Consensus         5 ~~l~~k~~l-VTGa~~s------~GIG~ai---a~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (319)
T 2ptg_A            5 VDLRGKTAF-VAGVADS------NGYGWAI---CKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVA   74 (319)
T ss_dssp             CCCTTCEEE-EECCCCT------TSHHHHH---HHHHHHTTCEEEEEECHHHHHHHHC----------------------
T ss_pred             cccCCCEEE-EeCCCCC------CcHHHHH---HHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHH
Confidence            457899999 9998  9      9999999   6667778887764  432           1222           223


Q ss_pred             HHHHhhCCC-CceEEEEcc------------CCC--------hHHHHHHHHHHHHhCCCccEEEEccccc----CCCCCC
Q psy4251          75 SKILTEKPS-AQCIAMELD------------LCR--------LKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSH  129 (292)
Q Consensus        75 ~~l~~~~~~-~~~~~~~~D------------ls~--------~~~v~~~~~~~~~~~~~id~lI~nAg~~----~~~~~~  129 (292)
                      +++.+.... ....++.+|            ++|        .++++++++++.+++++||+||||||+.    .+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~  154 (319)
T 2ptg_A           75 AEAAEKPVDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQT  154 (319)
T ss_dssp             ----------CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGC
T ss_pred             HHhhhccccccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccC
Confidence            333322100 012444443            333        4589999999999999999999999975    345677


Q ss_pred             CCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhh-hHHHHhHH
Q psy4251         130 TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAM-TAYNDTKL  208 (292)
Q Consensus       130 ~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~  208 (292)
                      +.++|+.++++|+.++++++++++|+|.+  .  ++||++||..+..+.            +       +. ..|++||+
T Consensus       155 ~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~--g~Iv~isS~~~~~~~------------~-------~~~~~Y~asKa  211 (319)
T 2ptg_A          155 SRKGYLAAVSSSSYSFVSLLQHFLPLMKE--G--GSALALSYIASEKVI------------P-------GYGGGMSSAKA  211 (319)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHGGGEEE--E--EEEEEEEECC------------------------------------
T ss_pred             CHHHHHHHHhHhhHHHHHHHHHHHHHHhc--C--ceEEEEecccccccc------------C-------ccchhhHHHHH
Confidence            88999999999999999999999999965  3  899999998876654            2       44 58999999


Q ss_pred             HHHHHHHHHHhHhcC-CCeEEEEecCCccc-cccccccccC---Cccchhhhhhc--cccccCCHHHhhc------cccc
Q psy4251         209 CNVLFGEKLATLWYK-YKIALSSRHCCWKI-TVSKKWWRFG---TPVRTFSWISR--VRPVTNFQVDLTG------TAEK  275 (292)
Q Consensus       209 a~~~~~~~la~~~~~-~gi~v~~v~PG~v~-~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~a~------~~~~  275 (292)
                      ++..|+++++.|+.+ +||+||+|+||+|+ ++.+......   ....+...+..  ......+|++.|.      ++..
T Consensus       212 al~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~  291 (319)
T 2ptg_A          212 ALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAALFLLSPLA  291 (319)
T ss_dssp             -THHHHHHHHHHHHHHHCCEEEEEEECCCC-------------------------------CCCHHHHHHHHHHHTSGGG
T ss_pred             HHHHHHHHHHHHhccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCccc
Confidence            999999999999975 79999999999999 8876532100   00011000100  1123568999987      4556


Q ss_pred             CCCCCccc
Q psy4251         276 VGLSGLPD  283 (292)
Q Consensus       276 ~~~~G~~~  283 (292)
                      ...+|+.+
T Consensus       292 ~~itG~~i  299 (319)
T 2ptg_A          292 RAVTGATL  299 (319)
T ss_dssp             TTCCSCEE
T ss_pred             CCccCCEE
Confidence            67788866

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.96  E-value=1.1e-29  Score=221.23  Aligned_cols=229  Identities=10%  Similarity=-0.042  Sum_probs=161.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHH-------HHHHHHHHhhCCCC---ceEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKA-------NDAISKILTEKPSA---QCIA   88 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~-------~~~~~~l~~~~~~~---~~~~   88 (292)
                      .+++||+++ ||||+    ..+|||+++   +.+|++.|+.|+.  |+....       ++..+++.+...+.   ....
T Consensus         4 ~~l~~k~~l-VTGas----~~~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (297)
T 1d7o_A            4 IDLRGKRAF-IAGIA----DDNGYGWAV---AKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKV   75 (297)
T ss_dssp             CCCTTCEEE-EECCS----SSSSHHHHH---HHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEE
T ss_pred             cccCCCEEE-EECCC----CCCChHHHH---HHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccc
Confidence            457899999 99983    016999999   6667788888764  442111       00011111110011   1234


Q ss_pred             EEcc--------CC------------ChHHHHHHHHHHHHhCCCccEEEEccccc----CCCCCCCCcchhhhhhhhhhH
Q psy4251          89 MELD--------LC------------RLKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLA  144 (292)
Q Consensus        89 ~~~D--------ls------------~~~~v~~~~~~~~~~~~~id~lI~nAg~~----~~~~~~~~~~~~~~~~vN~~~  144 (292)
                      +.+|        ++            +.++++++++++.++++++|+||||||+.    .+..+.+.++|++.+++|+.|
T Consensus        76 ~~~~~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g  155 (297)
T 1d7o_A           76 YPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYS  155 (297)
T ss_dssp             EEECTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHH
T ss_pred             cccceeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhH
Confidence            4443        32            26789999999999999999999999974    345677889999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhh-hHHHHhHHHHHHHHHHHHhHhcC
Q psy4251         145 HFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAM-TAYNDTKLCNVLFGEKLATLWYK  223 (292)
Q Consensus       145 ~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~la~~~~~  223 (292)
                      +++++++++|.|++  .  ++||++||..+..+.            +       +. ..|++||++++.|+++++.|+.+
T Consensus       156 ~~~l~~~~~~~m~~--~--g~iv~isS~~~~~~~------------~-------~~~~~Y~asKaa~~~~~~~la~e~~~  212 (297)
T 1d7o_A          156 FVSLLSHFLPIMNP--G--GASISLTYIASERII------------P-------GYGGGMSSAKAALESDTRVLAFEAGR  212 (297)
T ss_dssp             HHHHHHHHGGGEEE--E--EEEEEEECGGGTSCC------------T-------TCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--C--ceEEEEeccccccCC------------C-------CcchHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999965  3  899999999877654            2       44 58999999999999999999974


Q ss_pred             -CCeEEEEecCCccc-cccccccccCCccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         224 -YKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       224 -~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       +||+||+|+||+|. ++.+....   ...+...+..  ......+|++.|.      ++.....+|+.+
T Consensus       213 ~~gi~vn~v~PG~v~T~~~~~~~~---~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~itG~~i  279 (297)
T 1d7o_A          213 KQNIRVNTISAGPLGSRAAKAIGF---IDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATI  279 (297)
T ss_dssp             HHCCEEEEEEECCCBCCCSSCCSH---HHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             ccCcEEEEEeccccccchhhhccc---cHHHHHHhhccCCCCCCCCHHHHHHHHHHHhCccccCCCCCEE
Confidence             79999999999999 88765311   0111111100  1123568999987      444566678755

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.96  E-value=9.5e-29  Score=222.93  Aligned_cols=189  Identities=9%  Similarity=-0.125  Sum_probs=153.2

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhh--HHHHHHHHhhcCcEEEE--cCHHH------------HHHHHHHHHhhCCCCce
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKK--DGNLCFDLVQSSKLFYQ--NCWDK------------ANDAISKILTEKPSAQC   86 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~--~a~~~~~l~~~g~~v~~--r~~~~------------~~~~~~~l~~~~~~~~~   86 (292)
                      +.||+++ ||||+      +|||++  +   +..+++.|+.|+.  |+...            .+.+.+.+.+.  +.++
T Consensus        58 ~~gK~aL-VTGas------sGIG~A~ai---a~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~  125 (418)
T 4eue_A           58 RGPKKVL-IVGAS------SGFGLATRI---SVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK--GLVA  125 (418)
T ss_dssp             CCCSEEE-EESCS------SHHHHHHHH---HHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT--TCCE
T ss_pred             CCCCEEE-EECCC------cHHHHHHHH---HHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc--CCcE
Confidence            6899999 99999      999999  7   6778788988753  54221            23333333333  5689


Q ss_pred             EEEEccCCChHHHHHHHHHHHHhCCCccEEEEccccc---------------CCC---------------------CCCC
Q psy4251          87 IAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---------------GLG---------------------FSHT  130 (292)
Q Consensus        87 ~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~---------------~~~---------------------~~~~  130 (292)
                      ..++||++|.++++++++++.+++++||+||||||..               .+.                     .+.+
T Consensus       126 ~~~~~Dvtd~~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t  205 (418)
T 4eue_A          126 KNFIEDAFSNETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSAS  205 (418)
T ss_dssp             EEEESCTTCHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCC
T ss_pred             EEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCC
Confidence            9999999999999999999999999999999999973               122                     2457


Q ss_pred             CcchhhhhhhhhhHHH-HHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhh--hHHHHhH
Q psy4251         131 EDGFETTFQVNHLAHF-YLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAM--TAYNDTK  207 (292)
Q Consensus       131 ~~~~~~~~~vN~~~~~-~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sK  207 (292)
                      .++|+.++++|..+.+ .+++++++.+...+.  ++||++||.++..+.            +       ..  ..|++||
T Consensus       206 ~e~~~~~~~vn~~~~~~~~~~~l~~~~~~~~g--g~IV~iSSi~~~~~~------------p-------~~~~~aY~ASK  264 (418)
T 4eue_A          206 IEEIEETRKVMGGEDWQEWCEELLYEDCFSDK--ATTIAYSYIGSPRTY------------K-------IYREGTIGIAK  264 (418)
T ss_dssp             HHHHHHHHHHHSSHHHHHHHHHHHHTTCEEEE--EEEEEEECCCCGGGT------------T-------TTTTSHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCC--cEEEEEeCchhcCCC------------C-------ccccHHHHHHH
Confidence            8899999999999988 778887765443445  899999999877654            2       44  7899999


Q ss_pred             HHHHHHHHHHHhHhcC-CCeEEEEecCCccc-ccccccc
Q psy4251         208 LCNVLFGEKLATLWYK-YKIALSSRHCCWKI-TVSKKWW  244 (292)
Q Consensus       208 ~a~~~~~~~la~~~~~-~gi~v~~v~PG~v~-~~~~~~~  244 (292)
                      +++..|+++|+.|+++ +||+||+|+||+|. ++.+..+
T Consensus       265 aAL~~ltrsLA~ELa~~~GIrVN~V~PG~v~T~~s~~ip  303 (418)
T 4eue_A          265 KDLEDKAKLINEKLNRVIGGRAFVSVNKALVTKASAYIP  303 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCEEEEEECCCCCCHHHHTST
T ss_pred             HHHHHHHHHHHHHhCCccCeEEEEEECCcCcChhhhcCC
Confidence            9999999999999999 89999999999999 8877653

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.95  E-value=4.6e-29  Score=212.70  Aligned_cols=223  Identities=14%  Similarity=0.044  Sum_probs=147.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++++           .   . +++|++|.+++++++
T Consensus         2 k~vl-VTGas------~gIG~~~---a~~l~~~G~~V~~~~r~~~~~~-----------~---~-~~~Dl~~~~~v~~~~   56 (257)
T 1fjh_A            2 SIIV-ISGCA------TGIGAAT---RKVLEAAGHQIVGIDIRDAEVI-----------A---D-LSTAEGRKQAIADVL   56 (257)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSSSSEE-----------C---C-TTSHHHHHHHHHHHH
T ss_pred             CEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCchhhc-----------c---c-cccCCCCHHHHHHHH
Confidence            5677 99999      9999999   5666677877764  6543221           0   1 679999999998887


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      +++   .+++|+||||||+..+     .+.|+..+++|+.++++++++++|.|.++..  ++||++||..+.........
T Consensus        57 ~~~---~~~id~lv~~Ag~~~~-----~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--g~iv~isS~~~~~~~~~~~~  126 (257)
T 1fjh_A           57 AKC---SKGMDGLVLCAGLGPQ-----TKVLGNVVSVNYFGATELMDAFLPALKKGHQ--PAAVVISSVASAHLAFDKNP  126 (257)
T ss_dssp             TTC---TTCCSEEEECCCCCTT-----CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSS--CEEEEECCGGGGSSCGGGCT
T ss_pred             HHh---CCCCCEEEECCCCCCC-----cccHHHHHHHhhHHHHHHHHHHHHHHhhcCC--cEEEEECChhhhccccccch
Confidence            743   3789999999998642     2449999999999999999999999988777  99999999987732110000


Q ss_pred             CC-------ccccCc--CCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         184 IS-------KSVLSV--ENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       184 ~~-------~~~~~~--~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..       ++....  +......+...|++||++++.+++++++++.++||+||+|+||+|. ++.+..........+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~  206 (257)
T 1fjh_A          127 LALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESI  206 (257)
T ss_dssp             THHHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-------------------
T ss_pred             hhhhhcccchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhHHHHH
Confidence            00       000000  0001223678999999999999999999999889999999999999 8876541111111111


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..+........+|++.|.      .+.....+|+++
T Consensus       207 ~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~tG~~~  242 (257)
T 1fjh_A          207 AKFVPPMGRRAEPSEMASVIAFLMSPAASYVHGAQI  242 (257)
T ss_dssp             --CCCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             HhcccccCCCCCHHHHHHHHHHHhCchhcCCcCCEE
Confidence            110001123568899887      444456788866

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.95  E-value=4.2e-28  Score=204.69  Aligned_cols=210  Identities=16%  Similarity=0.067  Sum_probs=160.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+              ..++.++++|++|.++++++
T Consensus         2 ~k~vl-VtGas------ggiG~~l---a~~l~~~G~~V~~~~r~~~--------------~~~~~~~~~D~~~~~~~~~~   57 (242)
T 1uay_A            2 ERSAL-VTGGA------SGLGRAA---ALALKARGYRVVVLDLRRE--------------GEDLIYVEGDVTREEDVRRA   57 (242)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHHTCEEEEEESSCC--------------SSSSEEEECCTTCHHHHHHH
T ss_pred             CCEEE-EeCCC------ChHHHHH---HHHHHHCCCEEEEEccCcc--------------ccceEEEeCCCCCHHHHHHH
Confidence            67888 99999      9999999   5556677877764  5532              12458899999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC--CCCCCCCc----chhhhhhhhhhHHHHHHHHHHHHHHhcC---C-CCcEEEEEcCc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG--LGFSHTED----GFETTFQVNHLAHFYLTLQLENALIKGA---K-LFARVVVVSSE  172 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~----~~~~~~~vN~~~~~~l~~~ll~~l~~~~---~-~~~~iV~vsS~  172 (292)
                      ++++ ++++++|+||||||...  +..+.+.+    ++++.+++|+.+++.++++++|.|.+++   . +.++||++||.
T Consensus        58 ~~~~-~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~  136 (242)
T 1uay_A           58 VARA-QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASV  136 (242)
T ss_dssp             HHHH-HHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCT
T ss_pred             HHHH-HhhCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCCh
Confidence            9999 77889999999999864  33444444    8999999999999999999999998654   2 01499999999


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVR  251 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~  251 (292)
                      .+..+.            +       +...|++||++++.++++++.++.+.||++++|+||+|. ++.+....     .
T Consensus       137 ~~~~~~------------~-------~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-----~  192 (242)
T 1uay_A          137 AAFEGQ------------I-------GQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPE-----K  192 (242)
T ss_dssp             HHHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCH-----H
T ss_pred             hhccCC------------C-------CCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccch-----h
Confidence            877654            2       678999999999999999999999889999999999999 87654321     1


Q ss_pred             hhhhhhccc---cccCCHHHhhc----ccccCCCCCccc
Q psy4251         252 TFSWISRVR---PVTNFQVDLTG----TAEKVGLSGLPD  283 (292)
Q Consensus       252 ~~~~~~~~~---~~~~~~~~~a~----~~~~~~~~G~~~  283 (292)
                      +...+....   ....++++.|+    .-.....+|+.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~G~~~  231 (242)
T 1uay_A          193 AKASLAAQVPFPPRLGRPEEYAALVLHILENPMLNGEVV  231 (242)
T ss_dssp             HHHHHHTTCCSSCSCCCHHHHHHHHHHHHHCTTCCSCEE
T ss_pred             HHHHHHhhCCCcccCCCHHHHHHHHHHHhcCCCCCCcEE
Confidence            111111111   23568898887    111145677755

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.95  E-value=4.5e-27  Score=219.19  Aligned_cols=183  Identities=10%  Similarity=-0.003  Sum_probs=150.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE-EcC-------------HHHHHHHHHHHHhhCCCCceEEE
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY-QNC-------------WDKANDAISKILTEKPSAQCIAM   89 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~-~r~-------------~~~~~~~~~~l~~~~~~~~~~~~   89 (292)
                      .+++++ ||||+      +|||+++|+++.+.+...+.++ .|+             .+++++..+++.+.  +.++.++
T Consensus       250 ~~~~vL-ITGgs------gGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~v~~~  320 (525)
T 3qp9_A          250 ADGTVL-VTGAE------EPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL--GATATVV  320 (525)
T ss_dssp             TTSEEE-ESSTT------SHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHH--TCEEEEE
T ss_pred             CCCEEE-EECCC------CcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhc--CCEEEEE
Confidence            578888 99999      9999999666554432223344 566             46677888888776  6799999


Q ss_pred             EccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEE
Q psy4251          90 ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARV  166 (292)
Q Consensus        90 ~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~i  166 (292)
                      +||++|.++++++++++. ++++||+||||||+..  +..+.+.++++..+++|+.|++++.+.+.+.+++++ .  ++|
T Consensus       321 ~~Dvtd~~~v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~--~~i  397 (525)
T 3qp9_A          321 TCDLTDAEAAARLLAGVS-DAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRP--PVL  397 (525)
T ss_dssp             ECCTTSHHHHHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CC--CEE
T ss_pred             ECCCCCHHHHHHHHHHHH-hcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--CEE
Confidence            999999999999999998 7899999999999874  567789999999999999999999999999987664 5  899


Q ss_pred             EEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         167 VVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       167 V~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      |++||.++..+.            +       +...|+++|++++.|+    +++...||++++|+||.+. +|..
T Consensus       398 V~~SS~a~~~g~------------~-------g~~~YaaaKa~l~~lA----~~~~~~gi~v~sI~pG~~~tgm~~  450 (525)
T 3qp9_A          398 VLFSSVAAIWGG------------A-------GQGAYAAGTAFLDALA----GQHRADGPTVTSVAWSPWEGSRVT  450 (525)
T ss_dssp             EEEEEGGGTTCC------------T-------TCHHHHHHHHHHHHHH----TSCCSSCCEEEEEEECCBTTSGGG
T ss_pred             EEECCHHHcCCC------------C-------CCHHHHHHHHHHHHHH----HHHHhCCCCEEEEECCcccccccc
Confidence            999999988776            3       7889999999988774    5666779999999999999 8874

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.94  E-value=7.4e-26  Score=186.51  Aligned_cols=170  Identities=16%  Similarity=0.057  Sum_probs=138.1

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      |+++ ||||+      +|||+++   +.+|+++.+.++.|+.+++++..+++.    .   .++++|++|++++++++++
T Consensus         1 k~vl-VtGas------g~iG~~l---a~~l~~~~V~~~~r~~~~~~~~~~~~~----~---~~~~~D~~~~~~~~~~~~~   63 (207)
T 2yut_A            1 MRVL-ITGAT------GGLGGAF---ARALKGHDLLLSGRRAGALAELAREVG----A---RALPADLADELEAKALLEE   63 (207)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHTTTSEEEEECSCHHHHHHHHHHHT----C---EECCCCTTSHHHHHHHHHH
T ss_pred             CEEE-EEcCC------cHHHHHH---HHHHHhCCEEEEECCHHHHHHHHHhcc----C---cEEEeeCCCHHHHHHHHHh
Confidence            4677 99999      9999999   555666622223488888777666552    1   7889999999999999887


Q ss_pred             HHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         106 YQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                          ++++|+||||||...  +..+.+.++++..+++|+.+++.+++++    .+++.  ++||++||..+..+.     
T Consensus        64 ----~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~--~~iv~~sS~~~~~~~-----  128 (207)
T 2yut_A           64 ----AGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHA----RFQKG--ARAVFFGAYPRYVQV-----  128 (207)
T ss_dssp             ----HCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHC----CEEEE--EEEEEECCCHHHHSS-----
T ss_pred             ----cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH----HhcCC--cEEEEEcChhhccCC-----
Confidence                578999999999863  4456788999999999999999999988    33344  899999999877654     


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                             +       +...|+++|++++.+++++++++.+.||++++++||++. ++..
T Consensus       129 -------~-------~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~  173 (207)
T 2yut_A          129 -------P-------GFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA  173 (207)
T ss_dssp             -------T-------TBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG
T ss_pred             -------C-------CcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc
Confidence                   2       678999999999999999999999889999999999999 7743

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.93  E-value=3.9e-26  Score=232.93  Aligned_cols=187  Identities=11%  Similarity=0.102  Sum_probs=155.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCccc-chhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCC--CCceEEEEccCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTG-LKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKP--SAQCIAMELDLC   94 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~G-iG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls   94 (292)
                      .+++||+++ ||||+      +| ||+++   +..|+..|+.|++   |+.++++++.+++.+..+  +.++.+++||++
T Consensus       671 m~l~gKvaL-VTGAS------sGgIG~aI---A~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVs  740 (1887)
T 2uv8_A          671 VTFKDKYVL-ITGAG------KGSIGAEV---LQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQG  740 (1887)
T ss_dssp             BCCTTCEEE-EESCC------SSSHHHHH---HHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred             CCCCCCEEE-EECCC------CcHHHHHH---HHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCC
Confidence            468899999 99999      98 99999   5667778877763   677788787777754432  458999999999


Q ss_pred             ChHHHHHHHHHHHHh-----CC-CccEEEEcccccC---CCCCCC--CcchhhhhhhhhhHHHHHHHHH--HHHHHhcCC
Q psy4251          95 RLKSVKKFAEEYQKK-----FR-SLNILVLNAGVFG---LGFSHT--EDGFETTFQVNHLAHFYLTLQL--ENALIKGAK  161 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~-----~~-~id~lI~nAg~~~---~~~~~~--~~~~~~~~~vN~~~~~~l~~~l--l~~l~~~~~  161 (292)
                      |.++++++++++.++     +| +||+||||||+..   +..+.+  .++|+..+++|+.+++.+++.+  +|.|.+++.
T Consensus       741 d~~sV~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~  820 (1887)
T 2uv8_A          741 SKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPA  820 (1887)
T ss_dssp             CHHHHHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCE
T ss_pred             CHHHHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCC
Confidence            999999999999988     66 9999999999863   345566  7899999999999999999988  677776655


Q ss_pred             CCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHH-HHHHHhHhcCCCeEEEEecCCccc--c
Q psy4251         162 LFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLF-GEKLATLWYKYKIALSSRHCCWKI--T  238 (292)
Q Consensus       162 ~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~-~~~la~~~~~~gi~v~~v~PG~v~--~  238 (292)
                        ++||++||..+..+                     +...|++||+++.+| ++.++.++.+. |+||+|+||+|+  +
T Consensus       821 --G~IVnISS~ag~~g---------------------g~~aYaASKAAL~~Lttr~lA~ela~~-IrVNaV~PG~V~tT~  876 (1887)
T 2uv8_A          821 --QVILPMSPNHGTFG---------------------GDGMYSESKLSLETLFNRWHSESWANQ-LTVCGAIIGWTRGTG  876 (1887)
T ss_dssp             --EEEEEECSCTTCSS---------------------CBTTHHHHHHHGGGHHHHHHHSSCTTT-EEEEEEEECCEECC-
T ss_pred             --CEEEEEcChHhccC---------------------CCchHHHHHHHHHHHHHHHHHHHhCCC-eEEEEEEeccccccc
Confidence              89999999877653                     346899999999999 99999999887 999999999998  5


Q ss_pred             ccc
Q psy4251         239 VSK  241 (292)
Q Consensus       239 ~~~  241 (292)
                      |..
T Consensus       877 m~~  879 (1887)
T 2uv8_A          877 LMS  879 (1887)
T ss_dssp             ---
T ss_pred             ccc
Confidence            654

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-26  Score=230.14  Aligned_cols=189  Identities=11%  Similarity=0.102  Sum_probs=157.2

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCccc-chhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCC--CCceEEEEcc
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTG-LKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKP--SAQCIAMELD   92 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~G-iG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~--~~~~~~~~~D   92 (292)
                      ...+++||+++ ||||+      +| ||+++   +..|++.|+.|++   |+.++++++.+++.+..+  +.++.+++||
T Consensus       470 ~~msL~GKvAL-VTGAS------gGGIGrAI---Ar~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~D  539 (1688)
T 2pff_A          470 XXVTFKDKYVL-ITGAG------KGSIGAEV---LQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFN  539 (1688)
T ss_dssp             SCCCCCSCCEE-ECSCS------SSSTHHHH---HHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECC
T ss_pred             cccccCCCEEE-EECCC------hHHHHHHH---HHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeC
Confidence            34568999999 99999      98 99999   5556677877763   666666677777754432  4589999999


Q ss_pred             CCChHHHHHHHHHHHHh-----CC-CccEEEEcccccC---CCCCCC--CcchhhhhhhhhhHHHHHHHHH--HHHHHhc
Q psy4251          93 LCRLKSVKKFAEEYQKK-----FR-SLNILVLNAGVFG---LGFSHT--EDGFETTFQVNHLAHFYLTLQL--ENALIKG  159 (292)
Q Consensus        93 ls~~~~v~~~~~~~~~~-----~~-~id~lI~nAg~~~---~~~~~~--~~~~~~~~~vN~~~~~~l~~~l--l~~l~~~  159 (292)
                      ++|.++++++++++.++     ++ +||+||||||+..   +..+.+  .++|++.+++|+.+++.+++.+  +|.|.++
T Consensus       540 VTD~esVeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~kr  619 (1688)
T 2pff_A          540 QGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETR  619 (1688)
T ss_dssp             SSSTTHHHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             CCCHHHHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhC
Confidence            99999999999999988     77 9999999999863   345666  7899999999999999999998  7888776


Q ss_pred             CCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHH-HHHHHhHhcCCCeEEEEecCCccc-
Q psy4251         160 AKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLF-GEKLATLWYKYKIALSSRHCCWKI-  237 (292)
Q Consensus       160 ~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~-~~~la~~~~~~gi~v~~v~PG~v~-  237 (292)
                      +.  ++||++||..+..+                     +...|++||+++.+| .+.++.++.+. |+||+|+||+|+ 
T Consensus       620 gg--GrIVnISSiAG~~G---------------------g~saYaASKAAL~aLttrsLAeEla~~-IRVNaVaPG~V~T  675 (1688)
T 2pff_A          620 PA--QVILPMSPNHGTFG---------------------GDGMYSESKLSLETLFNRWHSESWANQ-LTVCGAIIGWTRG  675 (1688)
T ss_dssp             CE--EECCCCCSCTTTSS---------------------CBTTHHHHHHHHTHHHHHTTTSSCTTT-EECCCCCCCCCCC
T ss_pred             CC--CEEEEEEChHhccC---------------------CchHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEEECcCcC
Confidence            66  89999999877653                     346899999999999 78889988876 999999999998 


Q ss_pred             -cccc
Q psy4251         238 -TVSK  241 (292)
Q Consensus       238 -~~~~  241 (292)
                       +|..
T Consensus       676 T~M~~  680 (1688)
T 2pff_A          676 TGLMS  680 (1688)
T ss_dssp             CSSSC
T ss_pred             CcccC
Confidence             5654

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.93  E-value=8.4e-26  Score=185.61  Aligned_cols=159  Identities=13%  Similarity=0.017  Sum_probs=134.0

Q ss_pred             Cc-eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          25 GC-LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        25 g~-~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      || +++ ||||+      +|||+++   +.+|+ +|+.|+.  |+.+                   .+++|+++++++++
T Consensus         2 ~kM~vl-VtGas------g~iG~~~---~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~~~~~~   51 (202)
T 3d7l_A            2 NAMKIL-LIGAS------GTLGSAV---KERLE-KKAEVITAGRHSG-------------------DVTVDITNIDSIKK   51 (202)
T ss_dssp             CSCEEE-EETTT------SHHHHHH---HHHHT-TTSEEEEEESSSS-------------------SEECCTTCHHHHHH
T ss_pred             CCcEEE-EEcCC------cHHHHHH---HHHHH-CCCeEEEEecCcc-------------------ceeeecCCHHHHHH
Confidence            45 677 99999      9999999   66676 7877764  5532                   47899999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++    +++|+||||||...  +..+.+.+++++.+++|+.+++.+++++.|.|.+  .  ++||++||..+..+. 
T Consensus        52 ~~~~~----~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~--~~iv~~sS~~~~~~~-  122 (202)
T 3d7l_A           52 MYEQV----GKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND--K--GSFTLTTGIMMEDPI-  122 (202)
T ss_dssp             HHHHH----CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEE--E--EEEEEECCGGGTSCC-
T ss_pred             HHHHh----CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhcc--C--CEEEEEcchhhcCCC-
Confidence            98876    78999999999763  3456678899999999999999999999998754  3  899999998776543 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                                 +       +...|+.+|++++.+++++++++ +.||++++|+||++. ++..
T Consensus       123 -----------~-------~~~~Y~~sK~~~~~~~~~~~~e~-~~gi~v~~v~pg~v~~~~~~  166 (202)
T 3d7l_A          123 -----------V-------QGASAAMANGAVTAFAKSAAIEM-PRGIRINTVSPNVLEESWDK  166 (202)
T ss_dssp             -----------T-------TCHHHHHHHHHHHHHHHHHTTSC-STTCEEEEEEECCBGGGHHH
T ss_pred             -----------C-------ccHHHHHHHHHHHHHHHHHHHHc-cCCeEEEEEecCccCCchhh
Confidence                       2       66799999999999999999999 679999999999999 7653

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.92  E-value=2.9e-25  Score=226.13  Aligned_cols=188  Identities=13%  Similarity=0.114  Sum_probs=153.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCccc-chhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCC--CCceEEEEccCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTG-LKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKP--SAQCIAMELDLC   94 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~G-iG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls   94 (292)
                      .+++||+++ ||||+      +| ||+++   +..|+..|+.|++   |+.+++++..+++.+...  +.++.+++||++
T Consensus       648 m~L~gKvaL-VTGAS------gGgIG~aI---Ar~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVs  717 (1878)
T 2uv9_A          648 LTFQGKHAL-MTGAG------AGSIGAEV---LQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQG  717 (1878)
T ss_dssp             BCCTTCEEE-EESCC------TTSHHHHH---HHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred             CCCCCCEEE-EECCC------CcHHHHHH---HHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCC
Confidence            468899999 99999      98 99999   5556677877763   566777777666644322  458999999999


Q ss_pred             ChHHHHHHHHHHHHh---CC-CccEEEEcccccC---CCCCCC--CcchhhhhhhhhhHHHHHHHH--HHHHHHhcCCCC
Q psy4251          95 RLKSVKKFAEEYQKK---FR-SLNILVLNAGVFG---LGFSHT--EDGFETTFQVNHLAHFYLTLQ--LENALIKGAKLF  163 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~---~~-~id~lI~nAg~~~---~~~~~~--~~~~~~~~~vN~~~~~~l~~~--ll~~l~~~~~~~  163 (292)
                      |.++++++++++.++   +| +||+||||||+..   +..+.+  .++|+..+++|+.+++.+++.  ++|.|.+++.  
T Consensus       718 d~esV~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~--  795 (1878)
T 2uv9_A          718 SKQDVEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPA--  795 (1878)
T ss_dssp             CHHHHHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCE--
T ss_pred             CHHHHHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCC--
Confidence            999999999999998   88 9999999999863   446666  789999999999999999987  6787766655  


Q ss_pred             cEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHH-hHhcCCCeEEEEecCCccc--ccc
Q psy4251         164 ARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLA-TLWYKYKIALSSRHCCWKI--TVS  240 (292)
Q Consensus       164 ~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la-~~~~~~gi~v~~v~PG~v~--~~~  240 (292)
                      ++||++||..+..+                     +...|++||+++.+|++.++ .++.+. |+||+|+||+++  +|.
T Consensus       796 G~IVnISS~ag~~g---------------------g~~aYaASKAAL~aLt~~laAeEla~~-IrVNaVaPG~V~gT~m~  853 (1878)
T 2uv9_A          796 QVILPLSPNHGTFG---------------------NDGLYSESKLALETLFNRWYSESWGNY-LTICGAVIGWTRGTGLM  853 (1878)
T ss_dssp             EECCEECSCSSSSS---------------------CCSSHHHHHHHHTTHHHHHHHSTTTTT-EEEEEEEECCBCCTTSC
T ss_pred             CEEEEEcchhhccC---------------------CchHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEEecceecCccc
Confidence            89999999877654                     34579999999999988655 557765 999999999997  665


Q ss_pred             cc
Q psy4251         241 KK  242 (292)
Q Consensus       241 ~~  242 (292)
                      ..
T Consensus       854 ~~  855 (1878)
T 2uv9_A          854 SA  855 (1878)
T ss_dssp             SH
T ss_pred             cc
Confidence            43

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.92  E-value=5.4e-25  Score=203.19  Aligned_cols=171  Identities=12%  Similarity=0.037  Sum_probs=142.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcC---HHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNC---WDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +++++ ||||+      +|||+++|++   |+++|. +|+  .|+   .+.+++..+++.+.  +.++.+++||++|.++
T Consensus       239 ~~~vL-ITGgs------gGIG~alA~~---La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~  306 (496)
T 3mje_A          239 HGSVL-VTGGT------GGIGGRVARR---LAEQGAAHLVLTSRRGADAPGAAELRAELEQL--GVRVTIAACDAADREA  306 (496)
T ss_dssp             CSEEE-EETCS------SHHHHHHHHH---HHHTTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHH
T ss_pred             CCEEE-EECCC------CchHHHHHHH---HHHCCCcEEEEEeCCCCChHHHHHHHHHHHhc--CCeEEEEEccCCCHHH
Confidence            47888 99999      9999999555   556665 333  464   34566777778766  6799999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc-C--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF-G--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~-~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +.++++++.++ ++||+||||||+. .  +..+.+.++|+..+++|+.|++++.+.+.+.    ..  ++||++||.++.
T Consensus       307 v~~~~~~i~~~-g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~----~~--~~iV~~SS~a~~  379 (496)
T 3mje_A          307 LAALLAELPED-APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL----DL--DAFVLFSSGAAV  379 (496)
T ss_dssp             HHHHHHTCCTT-SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS----CC--SEEEEEEEHHHH
T ss_pred             HHHHHHHHHHh-CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc----CC--CEEEEEeChHhc
Confidence            99999998877 7899999999986 2  4677899999999999999999999877654    33  899999999988


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .+.            +       +...|+++|+++..|++.++    ..||++++|+||.+.
T Consensus       380 ~g~------------~-------g~~~YaAaKa~ldala~~~~----~~Gi~v~sV~pG~w~  418 (496)
T 3mje_A          380 WGS------------G-------GQPGYAAANAYLDALAEHRR----SLGLTASSVAWGTWG  418 (496)
T ss_dssp             TTC------------T-------TCHHHHHHHHHHHHHHHHHH----HTTCCCEEEEECEES
T ss_pred             CCC------------C-------CcHHHHHHHHHHHHHHHHHH----hcCCeEEEEECCccc
Confidence            776            3       78899999999998887554    458999999999887

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.91  E-value=4.1e-25  Score=215.08  Aligned_cols=173  Identities=15%  Similarity=0.094  Sum_probs=145.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHh-hcCc---EEEEcC---HHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLV-QSSK---LFYQNC---WDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~-~~g~---~v~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      .+++++ ||||+      +|||+++|++   |+ ++|+   .++.|+   .+++++..+++++.  +.++.+++||++|.
T Consensus       529 ~~~~~l-ItGg~------~GlG~aiA~~---la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--G~~v~~~~~Dvsd~  596 (795)
T 3slk_A          529 AAGTVL-VTGGT------GALGAEVARH---LVIERGVRNLVLVSRRGPAASGAAELVAQLTAY--GAEVSLQACDVADR  596 (795)
T ss_dssp             TTSEEE-EETTT------SHHHHHHHHH---HHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCH
T ss_pred             ccccee-eccCC------CCcHHHHHHH---HHHHcCCcEEEEeccCccchHHHHHHHHHHHhc--CCcEEEEEeecCCH
Confidence            578888 99999      9999999554   55 4565   233577   55677888888776  67999999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++++.+++ +||+||||||+..  ++.+++.++|+..+++|+.|++++++++.|.        -+||++||.++
T Consensus       597 ~~v~~~~~~~~~~~-~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~--------l~iV~~SS~ag  667 (795)
T 3slk_A          597 ETLAKVLASIPDEH-PLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD--------VALVLFSSVSG  667 (795)
T ss_dssp             HHHHHHHHTSCTTS-CEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT--------SEEEEEEETHH
T ss_pred             HHHHHHHHHHHHhC-CCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC--------CEEEEEccHHh
Confidence            99999999998876 8999999999974  5678899999999999999999999988543        38999999999


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ..+.            +       ++..|+++|+    |++++++++..+||++|+|+||++. ..+
T Consensus       668 ~~g~------------~-------g~~~YaAaka----~~~alA~~~~~~Gi~v~sI~pG~v~t~g~  711 (795)
T 3slk_A          668 VLGS------------G-------GQGNYAAANS----FLDALAQQRQSRGLPTRSLAWGPWAEHGM  711 (795)
T ss_dssp             HHTC------------S-------SCHHHHHHHH----HHHHHHHHHHHTTCCEEEEEECCCSCCCH
T ss_pred             cCCC------------C-------CCHHHHHHHH----HHHHHHHHHHHcCCeEEEEECCeECcchh
Confidence            8876            3       7889999995    6666677777779999999999998 543

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.91  E-value=1.3e-24  Score=184.37  Aligned_cols=222  Identities=13%  Similarity=-0.019  Sum_probs=151.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +.+|++.|+.|++  |+.++.+           .    .+++|+++.+++++++
T Consensus         2 k~vl-VtGas------g~iG~~l---~~~L~~~g~~V~~~~r~~~~~~-----------~----~~~~D~~~~~~~~~~~   56 (255)
T 2dkn_A            2 SVIA-ITGSA------SGIGAAL---KELLARAGHTVIGIDRGQADIE-----------A----DLSTPGGRETAVAAVL   56 (255)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSSSSEE-----------C----CTTSHHHHHHHHHHHH
T ss_pred             cEEE-EeCCC------cHHHHHH---HHHHHhCCCEEEEEeCChhHcc-----------c----cccCCcccHHHHHHHH
Confidence            4677 99999      9999999   5556677877764  6543211           0    1679999999999988


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      +++   .+++|+||||||....     .++++..+++|+.+++.+++++++.|.+...  ++||++||..+..+......
T Consensus        57 ~~~---~~~~d~vi~~Ag~~~~-----~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~--~~iv~~sS~~~~~~~~~~~~  126 (255)
T 2dkn_A           57 DRC---GGVLDGLVCCAGVGVT-----AANSGLVVAVNYFGVSALLDGLAEALSRGQQ--PAAVIVGSIAATQPGAAELP  126 (255)
T ss_dssp             HHH---TTCCSEEEECCCCCTT-----SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSS--CEEEEECCGGGGSTTGGGCH
T ss_pred             HHc---CCCccEEEECCCCCCc-----chhHHHHHHHHhHHHHHHHHHHHHHhhhcCC--ceEEEEeccccccccccccc
Confidence            865   3689999999997642     3458999999999999999999999987766  89999999877654210000


Q ss_pred             CCcccc---CcCC-----CCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         184 ISKSVL---SVEN-----YSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       184 ~~~~~~---~~~~-----~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      . .+..   ..+.     +....+...|+.||++++.+++.+++++.+.||++++++||.+. ++.+.............
T Consensus       127 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~~~~~~~~~~  205 (255)
T 2dkn_A          127 M-VEAMLAGDEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKADPRYGESTR  205 (255)
T ss_dssp             H-HHHHHHTCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHHCTTTHHHHH
T ss_pred             h-hhhhcccchhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhcccchhhHHHHH
Confidence            0 0000   0000     00001567899999999999999999998889999999999999 77655411111111111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .......-..++++.|+      .......+|+.|
T Consensus       206 ~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~  240 (255)
T 2dkn_A          206 RFVAPLGRGSEPREVAEAIAFLLGPQASFIHGSVL  240 (255)
T ss_dssp             SCCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHhCCCcccceeeEE
Confidence            11000112468888887      233334567655

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.89  E-value=6e-23  Score=189.88  Aligned_cols=176  Identities=11%  Similarity=0.041  Sum_probs=139.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcCHH---HHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNCWD---KANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~~~---~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++++ ||||+      +|||+++++++   ++.|+   .++.|+..   .+++..+++.+.  +.++.+++||++|.+
T Consensus       225 ~~~~vL-ITGgt------GgIG~~la~~L---a~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dv~d~~  292 (486)
T 2fr1_A          225 PTGTVL-VTGGT------GGVGGQIARWL---ARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRE  292 (486)
T ss_dssp             CCSEEE-EETTT------SHHHHHHHHHH---HHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHH
T ss_pred             CCCEEE-EECCC------CHHHHHHHHHH---HHcCCCEEEEEcCCCCCcHHHHHHHHHHHhc--CCEEEEEEeCCCCHH
Confidence            467888 99999      99999996654   45554   33457753   456677777665  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++.++++++ .++++||+||||||+..  ...+.+.++++..+++|+.|++++.+.+.+    .+.  ++||++||.++.
T Consensus       293 ~v~~~~~~i-~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~----~~~--~~~V~~SS~a~~  365 (486)
T 2fr1_A          293 SVRELLGGI-GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRE----LDL--TAFVLFSSFASA  365 (486)
T ss_dssp             HHHHHHHTS-CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT----SCC--SEEEEEEEHHHH
T ss_pred             HHHHHHHHH-HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCc----CCC--CEEEEEcChHhc
Confidence            999999998 55689999999999874  345678899999999999999999987643    244  899999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-c-ccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-T-VSK  241 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~-~~~  241 (292)
                      .+.            +       +...|+++|++++.|++.++    ..|+++++|+||.+. + |..
T Consensus       366 ~g~------------~-------g~~~Yaaaka~l~~la~~~~----~~gi~v~~i~pG~~~~~gm~~  410 (486)
T 2fr1_A          366 FGA------------P-------GLGGYAPGNAYLDGLAQQRR----SDGLPATAVAWGTWAGSGMAE  410 (486)
T ss_dssp             TCC------------T-------TCTTTHHHHHHHHHHHHHHH----HTTCCCEEEEECCBC------
T ss_pred             CCC------------C-------CCHHHHHHHHHHHHHHHHHH----hcCCeEEEEECCeeCCCcccc
Confidence            765            2       67789999999998877654    348999999999998 4 543

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.89  E-value=7.4e-23  Score=217.90  Aligned_cols=183  Identities=14%  Similarity=0.129  Sum_probs=141.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCccc-chhhHHHHHHHHhhcCcEEEE--cCHHH-----HHHHHHHHHhhCCCCceEEEEcc
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTG-LKKKDGNLCFDLVQSSKLFYQ--NCWDK-----ANDAISKILTEKPSAQCIAMELD   92 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~G-iG~~~a~~~~~l~~~g~~v~~--r~~~~-----~~~~~~~l~~~~~~~~~~~~~~D   92 (292)
                      ..++||+++ ||||+      +| ||+++   +..|++.|+.|++  |+.++     ++++.+++...  +.++..++||
T Consensus      2132 ~~l~gKvaL-VTGAs------~GsIG~Ai---A~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~--G~~~~~v~~D 2199 (3089)
T 3zen_D         2132 XXXXDEVAV-VTGAS------KGSIAASV---VGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARF--DATLWVVPAN 2199 (3089)
T ss_dssp             CCCCCCEEE-EESCC------TTSHHHHH---HHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCT--TCEEEEEECC
T ss_pred             ccCCCCEEE-EeCCC------hhHHHHHH---HHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhc--CCeEEEEEec
Confidence            348999999 99999      99 99999   7778889988874  65444     55555555433  5688999999


Q ss_pred             CCChHHHHHHHHHHHH----hCCCccEEEEcccc----c---CCCCCCCCcchhhh----hhhhhhHHHHHHHHHHHHHH
Q psy4251          93 LCRLKSVKKFAEEYQK----KFRSLNILVLNAGV----F---GLGFSHTEDGFETT----FQVNHLAHFYLTLQLENALI  157 (292)
Q Consensus        93 ls~~~~v~~~~~~~~~----~~~~id~lI~nAg~----~---~~~~~~~~~~~~~~----~~vN~~~~~~l~~~ll~~l~  157 (292)
                      ++|.++++++++++.+    ++|+||+||||||+    .   ....+.+.++|+..    +++|+.+.+.+++.+.|.|.
T Consensus      2200 vtd~~~v~~lv~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~ 2279 (3089)
T 3zen_D         2200 MASYSDIDKLVEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGA 2279 (3089)
T ss_dssp             TTCHHHHHHHHHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998    88999999999998    2   12334456666666    99999999999999999998


Q ss_pred             hcCCC-CcEEEEE-cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhH--hcCCCeEEEEecC
Q psy4251         158 KGAKL-FARVVVV-SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATL--WYKYKIALSSRHC  233 (292)
Q Consensus       158 ~~~~~-~~~iV~v-sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~--~~~~gi~v~~v~P  233 (292)
                      ++... ...++.. ++..+..+                     +...|++||+|+.+|+++++.|  +++ +|+||+++|
T Consensus      2280 ~~~~g~~~~ii~~~ss~~g~~g---------------------~~~aYsASKaAl~~LtrslA~E~~~a~-~IrVn~v~P 2337 (3089)
T 3zen_D         2280 ERDIASRLHVVLPGSPNRGMFG---------------------GDGAYGEAKSALDALENRWSAEKSWAE-RVSLAHALI 2337 (3089)
T ss_dssp             HTTCCCCEEEEEEECSSTTSCS---------------------SCSSHHHHGGGHHHHHHHHHHCSTTTT-TEEEEEEEC
T ss_pred             HcCCCceeEEEEECCcccccCC---------------------CchHHHHHHHHHHHHHHHHHhccccCC-CeEEEEEee
Confidence            76420 0123222 22221111                     3457999999999999999999  665 699999999


Q ss_pred             Cccc
Q psy4251         234 CWKI  237 (292)
Q Consensus       234 G~v~  237 (292)
                      |+|+
T Consensus      2338 G~v~ 2341 (3089)
T 3zen_D         2338 GWTK 2341 (3089)
T ss_dssp             CCEE
T ss_pred             cccC
Confidence            9998

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.88  E-value=5e-22  Score=170.23  Aligned_cols=167  Identities=13%  Similarity=0.037  Sum_probs=127.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++|+++ ||||+      +|||+++   +.+|++.|+.|++  |+..+..           +.++.++++|++|.+++++
T Consensus         2 ~~k~vl-VTGas------g~IG~~l---a~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~   60 (267)
T 3rft_A            2 AMKRLL-VTGAA------GQLGRVM---RERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADANAVNA   60 (267)
T ss_dssp             CEEEEE-EESTT------SHHHHHH---HHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCHHHHHH
T ss_pred             CCCEEE-EECCC------CHHHHHH---HHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCHHHHHH
Confidence            467888 99999      9999999   7778888887764  5542211           3578999999999999988


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++       ++|+||||||..      +.++++..+++|+.|++++++++.+    .+.  ++||++||..+.......
T Consensus        61 ~~~-------~~D~vi~~Ag~~------~~~~~~~~~~~N~~g~~~l~~a~~~----~~~--~~iv~~SS~~~~g~~~~~  121 (267)
T 3rft_A           61 MVA-------GCDGIVHLGGIS------VEKPFEQILQGNIIGLYNLYEAARA----HGQ--PRIVFASSNHTIGYYPQT  121 (267)
T ss_dssp             HHT-------TCSEEEECCSCC------SCCCHHHHHHHHTHHHHHHHHHHHH----TTC--CEEEEEEEGGGGTTSBTT
T ss_pred             HHc-------CCCEEEECCCCc------CcCCHHHHHHHHHHHHHHHHHHHHH----cCC--CEEEEEcchHHhCCCCCC
Confidence            865       589999999984      5667899999999999999999843    344  899999998776432211


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ..++.       .....+...|+.||++.+.+++.+++++   |+++++|.||.|. ++.
T Consensus       122 ~~~~e-------~~~~~~~~~Y~~sK~~~e~~~~~~a~~~---g~~~~~vr~~~v~~~~~  171 (267)
T 3rft_A          122 ERLGP-------DVPARPDGLYGVSKCFGENLARMYFDKF---GQETALVRIGSCTPEPN  171 (267)
T ss_dssp             SCBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECBCSSSCC
T ss_pred             CCCCC-------CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCeEEEEEeecccCCCC
Confidence            11111       1223366789999999999999999887   5777788888776 443

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.87  E-value=4.4e-22  Score=184.88  Aligned_cols=174  Identities=11%  Similarity=0.079  Sum_probs=139.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHH---HHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWD---KANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~---~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++++ ||||+      +|||++++++   |++.|+ +|+  .|+..   .+++..+++.+.  +.++.+++||++|.+
T Consensus       258 ~~~~vL-ITGgt------GgIG~~lA~~---La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~  325 (511)
T 2z5l_A          258 PSGTVL-ITGGM------GAIGRRLARR---LAAEGAERLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERD  325 (511)
T ss_dssp             CCSEEE-EETTT------SHHHHHHHHH---HHHTTCSEEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHH
T ss_pred             CCCEEE-EECCC------CHHHHHHHHH---HHhCCCcEEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHH
Confidence            467888 99999      9999999555   556665 343  57652   456677777665  678999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++.+++++     +++|+||||||+..  ...+.+.++++..+++|+.|.+++.+.+.+.   .+.  ++||++||.++.
T Consensus       326 ~v~~~~~~-----~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~---~~~--~~~V~~SS~a~~  395 (511)
T 2z5l_A          326 ALAALVTA-----YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADI---KGL--DAFVLFSSVTGT  395 (511)
T ss_dssp             HHHHHHHH-----SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC---TTC--CCEEEEEEGGGT
T ss_pred             HHHHHHhc-----CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhc---cCC--CEEEEEeCHHhc
Confidence            99999877     68999999999874  3456788999999999999999998876432   133  899999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCcc-c-ccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWK-I-TVSKK  242 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v-~-~~~~~  242 (292)
                      .+.            +       +...|+++|++++.|++.++    ..|+++++|+||.+ . +|...
T Consensus       396 ~g~------------~-------g~~~YaaaKa~ld~la~~~~----~~gi~v~sv~pG~~~~tgm~~~  441 (511)
T 2z5l_A          396 WGN------------A-------GQGAYAAANAALDALAERRR----AAGLPATSVAWGLWGGGGMAAG  441 (511)
T ss_dssp             TCC------------T-------TBHHHHHHHHHHHHHHHHHH----TTTCCCEEEEECCBCSTTCCCC
T ss_pred             CCC------------C-------CCHHHHHHHHHHHHHHHHHH----HcCCcEEEEECCcccCCccccc
Confidence            765            2       67899999999999988653    45899999999999 5 77654

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.83  E-value=4.9e-20  Score=163.56  Aligned_cols=169  Identities=12%  Similarity=0.047  Sum_probs=133.8

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-Cc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      ...++||+++ ||||+      ++||.++++   +|.+. |. .|+  .|+..+.++..+++.    ..++.++.+|++|
T Consensus        16 ~~~~~~k~vl-VTGat------G~iG~~l~~---~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d   81 (344)
T 2gn4_A           16 QNMLDNQTIL-ITGGT------GSFGKCFVR---KVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRD   81 (344)
T ss_dssp             CCTTTTCEEE-EETTT------SHHHHHHHH---HHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTC
T ss_pred             HHhhCCCEEE-EECCC------cHHHHHHHH---HHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCC
Confidence            3558899999 99999      999999954   45555 65 444  588887777666553    3578999999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      .+++.++++       ++|+|||+||.....  ......+..+++|+.++.++++++.+.    ..  ++||++||..+.
T Consensus        82 ~~~l~~~~~-------~~D~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~gt~~l~~aa~~~----~v--~~~V~~SS~~~~  146 (344)
T 2gn4_A           82 LERLNYALE-------GVDICIHAAALKHVP--IAEYNPLECIKTNIMGASNVINACLKN----AI--SQVIALSTDKAA  146 (344)
T ss_dssp             HHHHHHHTT-------TCSEEEECCCCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHHT----TC--SEEEEECCGGGS
T ss_pred             HHHHHHHHh-------cCCEEEECCCCCCCC--chhcCHHHHHHHHHHHHHHHHHHHHhC----CC--CEEEEecCCccC
Confidence            988877653       689999999976421  112345689999999999999998764    33  799999997543


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      .                      +...|+.||++.+.+++++++++...|+++++|.||.|. +.
T Consensus       147 ~----------------------p~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~  189 (344)
T 2gn4_A          147 N----------------------PINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSR  189 (344)
T ss_dssp             S----------------------CCSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCT
T ss_pred             C----------------------CccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCC
Confidence            2                      346899999999999999999887789999999999998 53

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.82  E-value=9.1e-20  Score=153.13  Aligned_cols=161  Identities=13%  Similarity=0.035  Sum_probs=118.7

Q ss_pred             CCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCce-EEEEccCCC
Q psy4251          19 PASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQC-IAMELDLCR   95 (292)
Q Consensus        19 ~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~-~~~~~Dls~   95 (292)
                      +..+++|++++ ||||+      +|||+++   +.+|.++|+.|+  .|+.+++++..    +    ..+ .++++|++ 
T Consensus        15 ~~~~l~~~~il-VtGat------G~iG~~l---~~~L~~~G~~V~~~~R~~~~~~~~~----~----~~~~~~~~~Dl~-   75 (236)
T 3e8x_A           15 ENLYFQGMRVL-VVGAN------GKVARYL---LSELKNKGHEPVAMVRNEEQGPELR----E----RGASDIVVANLE-   75 (236)
T ss_dssp             ------CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSGGGHHHHH----H----TTCSEEEECCTT-
T ss_pred             cccCcCCCeEE-EECCC------ChHHHHH---HHHHHhCCCeEEEEECChHHHHHHH----h----CCCceEEEcccH-
Confidence            34678999999 99999      9999999   556667787776  48876655432    2    257 88999998 


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                              +.+.+.++++|+||||||...      .++++..+++|+.++..+++++..    .+.  ++||++||..+.
T Consensus        76 --------~~~~~~~~~~D~vi~~ag~~~------~~~~~~~~~~n~~~~~~l~~a~~~----~~~--~~iv~~SS~~~~  135 (236)
T 3e8x_A           76 --------EDFSHAFASIDAVVFAAGSGP------HTGADKTILIDLWGAIKTIQEAEK----RGI--KRFIMVSSVGTV  135 (236)
T ss_dssp             --------SCCGGGGTTCSEEEECCCCCT------TSCHHHHHHTTTHHHHHHHHHHHH----HTC--CEEEEECCTTCS
T ss_pred             --------HHHHHHHcCCCEEEECCCCCC------CCCccccchhhHHHHHHHHHHHHH----cCC--CEEEEEecCCCC
Confidence                    334444568999999999753      357899999999999999998843    234  899999996544


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      .+..                .+.+...|+.+|.+.+.+++       ..|++++.++||++. +...
T Consensus       136 ~~~~----------------~~~~~~~Y~~sK~~~e~~~~-------~~gi~~~~lrpg~v~~~~~~  179 (236)
T 3e8x_A          136 DPDQ----------------GPMNMRHYLVAKRLADDELK-------RSSLDYTIVRPGPLSNEEST  179 (236)
T ss_dssp             CGGG----------------SCGGGHHHHHHHHHHHHHHH-------HSSSEEEEEEECSEECSCCC
T ss_pred             CCCC----------------ChhhhhhHHHHHHHHHHHHH-------HCCCCEEEEeCCcccCCCCC
Confidence            3210                00267899999999998876       348999999999999 6543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.81  E-value=1.1e-19  Score=194.01  Aligned_cols=174  Identities=11%  Similarity=-0.023  Sum_probs=129.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE-EE--EcCH---HHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL-FY--QNCW---DKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~-v~--~r~~---~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+|+++ ||||+      +|||+++|++   |+++|+. |+  .|+.   +...+..+++.+.  +.++.+++||++|.+
T Consensus      1883 ~~k~~l-ITGgs------~GIG~aia~~---la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dvsd~~ 1950 (2512)
T 2vz8_A         1883 PHKSYV-ITGGL------GGFGLQLAQW---LRLRGAQKLVLTSRSGIRTGYQARQVREWRRQ--GVQVLVSTSNASSLD 1950 (2512)
T ss_dssp             TTCEEE-EESTT------SHHHHHHHHH---HHHTTCCEEEEECSSCCCSHHHHHHHHHHHHT--TCEEEEECCCSSSHH
T ss_pred             CCCEEE-EECCC------CCHHHHHHHH---HHHCCCCEEEEEeCCCcchHHHHHHHHHHHhC--CCEEEEEecCCCCHH
Confidence            578888 99999      9999999555   5566764 33  3653   3344556666554  668999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.+ +++||+||||||+..  ++.+++.++|++.+++|+.|++++.+++.+.+.+.    ++||++||.++.
T Consensus      1951 ~v~~~~~~~~~-~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~----g~iV~iSS~ag~ 2025 (2512)
T 2vz8_A         1951 GARSLITEATQ-LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPEL----DYFVIFSSVSCG 2025 (2512)
T ss_dssp             HHHHHHHHHHH-HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTC----CEEEEECCHHHH
T ss_pred             HHHHHHHHHHh-cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CEEEEecchhhc
Confidence            99999999874 689999999999863  56788999999999999999999999999987643    899999999988


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .+.            +       +...|+++|+++.+|++....+    |+...++..|.+.
T Consensus      2026 ~g~------------~-------g~~~Y~aaKaal~~l~~~rr~~----Gl~~~a~~~g~~~ 2064 (2512)
T 2vz8_A         2026 RGN------------A-------GQANYGFANSAMERICEKRRHD----GLPGLAVQWGAIG 2064 (2512)
T ss_dssp             TTC------------T-------TCHHHHHHHHHHHHHHHHHHHT----TSCCCEEEECCBC
T ss_pred             CCC------------C-------CcHHHHHHHHHHHHHHHHHHHC----CCcEEEEEccCcC
Confidence            765            3       6789999999999999976654    5666666665543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.80  E-value=9.4e-19  Score=154.43  Aligned_cols=192  Identities=10%  Similarity=0.013  Sum_probs=138.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEE-EccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAM-ELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~-~~Dls~~~   97 (292)
                      ..++|++++ ||||+      ++||..+   +.+|.+.|+.|+  .|+.++.+...+.+.... +.++.++ ++|++|.+
T Consensus         7 ~~~~~~~vl-VTGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~   75 (342)
T 1y1p_A            7 VLPEGSLVL-VTGAN------GFVASHV---VEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQG   75 (342)
T ss_dssp             SSCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTT
T ss_pred             cCCCCCEEE-EECCc------cHHHHHH---HHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChH
Confidence            346788998 99999      9999999   555667787776  488877766666555433 2468888 89999998


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++       ++|+||||||.....     ++++..+++|+.++..+++++.+.   ...  ++||++||..+...
T Consensus        76 ~~~~~~~-------~~d~vih~A~~~~~~-----~~~~~~~~~n~~g~~~ll~~~~~~---~~~--~~iv~~SS~~~~~~  138 (342)
T 1y1p_A           76 AYDEVIK-------GAAGVAHIASVVSFS-----NKYDEVVTPAIGGTLNALRAAAAT---PSV--KRFVLTSSTVSALI  138 (342)
T ss_dssp             TTTTTTT-------TCSEEEECCCCCSCC-----SCHHHHHHHHHHHHHHHHHHHHTC---TTC--CEEEEECCGGGTCC
T ss_pred             HHHHHHc-------CCCEEEEeCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHhC---CCC--cEEEEeccHHHhcC
Confidence            8776643       689999999976421     357889999999999999988641   234  79999999876532


Q ss_pred             cCCC---CCCCccccCc---------CCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         178 YITK---DTISKSVLSV---------ENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       178 ~~~~---~~~~~~~~~~---------~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      ..+.   ..++.+++..         .......+...|+.||++.+.+++.+++++.. +++++++.||.+. +...
T Consensus       139 ~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~-~~~~~~~rp~~v~g~~~~  214 (342)
T 1y1p_A          139 PKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKP-HFTLNAVLPNYTIGTIFD  214 (342)
T ss_dssp             CCTTCCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCC-SSEEEEEEESEEECCCSC
T ss_pred             CCCCCCCcccCccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCC-CceEEEEcCCceECCCCC
Confidence            2100   0011111000         00001235678999999999999999999866 8999999999998 6543

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.79  E-value=4.1e-19  Score=158.03  Aligned_cols=185  Identities=12%  Similarity=0.017  Sum_probs=135.1

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +++++++ ||||+      ++||..+   +.+|.+.|+.|++  |+.++.....+.+. .  ..++.++++|+++.+++.
T Consensus         7 ~~~~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~Dl~d~~~~~   73 (357)
T 1rkx_A            7 WQGKRVF-VTGHT------GFKGGWL---SLWLQTMGATVKGYSLTAPTVPSLFETAR-V--ADGMQSEIGDIRDQNKLL   73 (357)
T ss_dssp             HTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCSSSSCHHHHTT-T--TTTSEEEECCTTCHHHHH
T ss_pred             hCCCEEE-EECCC------chHHHHH---HHHHHhCCCeEEEEeCCCcccchhhHhhc-c--CCceEEEEccccCHHHHH
Confidence            5678888 99999      9999999   5556677877764  66544333333322 1  347889999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++.+     ++|+||||||...  ...+.++++..+++|+.++..+++++.+.   ...  ++||++||...+.....
T Consensus        74 ~~~~~~-----~~d~vih~A~~~~--~~~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~--~~~v~~SS~~vyg~~~~  141 (357)
T 1rkx_A           74 ESIREF-----QPEIVFHMAAQPL--VRLSYSEPVETYSTNVMGTVYLLEAIRHV---GGV--KAVVNITSDKCYDNKEW  141 (357)
T ss_dssp             HHHHHH-----CCSEEEECCSCCC--HHHHHHCHHHHHHHHTHHHHHHHHHHHHH---CCC--CEEEEECCGGGBCCCCS
T ss_pred             HHHHhc-----CCCEEEECCCCcc--cccchhCHHHHHHHHHHHHHHHHHHHHHh---CCC--CeEEEecCHHHhCCCCc
Confidence            988776     6999999999631  12245667889999999999999998763   224  79999999876533210


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc------CCCeEEEEecCCccc-cc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY------KYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~------~~gi~v~~v~PG~v~-~~  239 (292)
                      ......       .....+...|+.+|.+.+.+++.++.++.      ..|++++.+.||.+. +.
T Consensus       142 ~~~~~E-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~  200 (357)
T 1rkx_A          142 IWGYRE-------NEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGG  200 (357)
T ss_dssp             SSCBCT-------TSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTT
T ss_pred             CCCCCC-------CCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCC
Confidence            000111       11223567899999999999999999874      347999999999998 53

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.78  E-value=8.4e-19  Score=154.93  Aligned_cols=180  Identities=13%  Similarity=0.063  Sum_probs=131.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+++++ ||||+      ++||+++   +.+|++.|+.|++  |+.++..+..+++.... +.++.++++|++|.+++++
T Consensus         4 ~~~~vl-VTGat------G~iG~~l---~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~   72 (341)
T 3enk_A            4 TKGTIL-VTGGA------GYIGSHT---AVELLAHGYDVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALAR   72 (341)
T ss_dssp             SSCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHH
T ss_pred             CCcEEE-EecCC------cHHHHHH---HHHHHHCCCcEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHH
Confidence            457888 99999      9999999   6667788888764  65554445555554432 3478899999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      ++++     .++|+||||||....  ....+..+..+++|+.++..+++++    .+.+.  ++||++||...+... ..
T Consensus        73 ~~~~-----~~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~--~~iv~~SS~~~~g~~-~~  138 (341)
T 3enk_A           73 IFDA-----HPITAAIHFAALKAV--GESVAKPIEYYRNNLDSLLSLLRVM----RERAV--KRIVFSSSATVYGVP-ER  138 (341)
T ss_dssp             HHHH-----SCCCEEEECCCCCCH--HHHHHCHHHHHHHHHHHHHHHHHHH----HHTTC--CEEEEEEEGGGBCSC-SS
T ss_pred             HHhc-----cCCcEEEECcccccc--CccccChHHHHHHHHHHHHHHHHHH----HhCCC--CEEEEEecceEecCC-CC
Confidence            8876     479999999997532  1123345678899999998877764    34445  799999997665322 11


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..++.       .....+...|+.||.+.+.+++.++.+++  +++++.+.||.+-
T Consensus       139 ~~~~e-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~lRp~~v~  185 (341)
T 3enk_A          139 SPIDE-------TFPLSATNPYGQTKLMAEQILRDVEAADP--SWRVATLRYFNPV  185 (341)
T ss_dssp             SSBCT-------TSCCBCSSHHHHHHHHHHHHHHHHHHHCT--TCEEEEEEECEEE
T ss_pred             CCCCC-------CCCCCCCChhHHHHHHHHHHHHHHhhcCC--CceEEEEeecccc
Confidence            11111       12233567899999999999999998875  5999999999887

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.78  E-value=1.4e-18  Score=153.42  Aligned_cols=184  Identities=11%  Similarity=0.003  Sum_probs=132.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +|++++ ||||+      ++||.++   +.+|.++|+.|++  |+.++...  +.+.......++.++++|++|.+++.+
T Consensus         2 ~~~~vl-VtGat------G~iG~~l---~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~   69 (345)
T 2z1m_A            2 SGKRAL-ITGIR------GQDGAYL---AKLLLEKGYEVYGADRRSGEFAS--WRLKELGIENDVKIIHMDLLEFSNIIR   69 (345)
T ss_dssp             -CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEECSCCSTTTT--HHHHHTTCTTTEEECCCCTTCHHHHHH
T ss_pred             CCCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEECCCccccc--ccHhhccccCceeEEECCCCCHHHHHH
Confidence            578888 99999      9999999   5666677887764  65433211  222222223478899999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++.+     ++|+||||||...  .+.+.++++..+++|+.++..+++++... .  ..  ++||++||...+.... .
T Consensus        70 ~~~~~-----~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~--~~--~~iv~~SS~~vyg~~~-~  136 (345)
T 2z1m_A           70 TIEKV-----QPDEVYNLAAQSF--VGVSFEQPILTAEVDAIGVLRILEALRTV-K--PD--TKFYQASTSEMFGKVQ-E  136 (345)
T ss_dssp             HHHHH-----CCSEEEECCCCCC--HHHHTTSHHHHHHHHTHHHHHHHHHHHHH-C--TT--CEEEEEEEGGGGCSCS-S
T ss_pred             HHHhc-----CCCEEEECCCCcc--hhhhhhCHHHHHHHHHHHHHHHHHHHHHh-C--CC--ceEEEEechhhcCCCC-C
Confidence            88776     6999999999753  22345678999999999999999998852 1  13  7999999986553221 0


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc---CCCeEEEEecCCccc-cc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY---KYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~---~~gi~v~~v~PG~v~-~~  239 (292)
                      ..++.       .....+...|+.||++.+.+++.++.++.   ..++.++.+.||.+. .+
T Consensus       137 ~~~~e-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~  191 (345)
T 2z1m_A          137 IPQTE-------KTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFV  191 (345)
T ss_dssp             SSBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSH
T ss_pred             CCCCc-------cCCCCCCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcch
Confidence            00111       12223567899999999999999998875   234677888899776 54

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.78  E-value=3.4e-18  Score=150.45  Aligned_cols=188  Identities=10%  Similarity=-0.103  Sum_probs=136.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHh-hcCcEEEE--cCH------------HHHHHHHHHHHhhCCCCc
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLV-QSSKLFYQ--NCW------------DKANDAISKILTEKPSAQ   85 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~-~~g~~v~~--r~~------------~~~~~~~~~l~~~~~~~~   85 (292)
                      ..+.+|+++ ||||+      +|||+++   +..++ ..|..+++  ++.            .....+.+++++.  +.+
T Consensus        46 ~~~~pK~vL-VtGaS------sGiGlA~---AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~--G~~  113 (401)
T 4ggo_A           46 GAKAPKNVL-VLGCS------NGYGLAS---RITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE--GLY  113 (401)
T ss_dssp             TSCCCCEEE-EESCS------SHHHHHH---HHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH--TCC
T ss_pred             ccCCCCEEE-EECCC------CcHHHHH---HHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHc--CCC
Confidence            456788999 99999      9999999   55554 45555542  321            2344556667776  789


Q ss_pred             eEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCC--CC----------------------------------CC
Q psy4251          86 CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL--GF----------------------------------SH  129 (292)
Q Consensus        86 ~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~--~~----------------------------------~~  129 (292)
                      ...++||++|.++++++++++++++|+||+||||+|....  +.                                  ..
T Consensus       114 a~~i~~Dv~d~e~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pa  193 (401)
T 4ggo_A          114 SVTIDGDAFSDEIKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPA  193 (401)
T ss_dssp             EEEEESCTTSHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCC
T ss_pred             ceeEeCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCC
Confidence            9999999999999999999999999999999999996521  00                                  01


Q ss_pred             CCcchhhhhhhhhh---HHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhh--hHHH
Q psy4251         130 TEDGFETTFQVNHL---AHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAM--TAYN  204 (292)
Q Consensus       130 ~~~~~~~~~~vN~~---~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~  204 (292)
                      +.++++.+..+.-.   +.+...+...+.|.+  +  +++|.+|+..+....            +       .+  ..++
T Consensus       194 t~eeie~T~~vMg~s~~s~w~~al~~a~lla~--G--~siva~SYiGse~t~------------P-------~Y~~G~mG  250 (401)
T 4ggo_A          194 NDEEAAATVKVMGGEDWERWIKQLSKEGLLEE--G--CITLAYSYIGPEATQ------------A-------LYRKGTIG  250 (401)
T ss_dssp             CHHHHHHHHHHHSSHHHHHHHHHHHHTTCEEE--E--EEEEEEECCCCGGGH------------H-------HHTTSHHH
T ss_pred             cHHHHHHHHHHHhhhHHHHHHHHHHhhhcccC--C--ceEEEEeccCcceee------------c-------CCCccHHH
Confidence            23344555555433   444445555555543  3  899999998765432            1       22  3689


Q ss_pred             HhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc
Q psy4251         205 DTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR  245 (292)
Q Consensus       205 ~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~  245 (292)
                      .+|++++..++.|+.++.+  ++++.+.||.+. ......+.
T Consensus       251 ~AKaaLEa~~r~La~eL~~--~~a~v~v~~a~vT~AssaIP~  290 (401)
T 4ggo_A          251 KAKEHLEATAHRLNKENPS--IRAFVSVNKGLVTRASAVIPV  290 (401)
T ss_dssp             HHHHHHHHHHHHHHHHCTT--EEEEEEECCCCCCTTGGGSSS
T ss_pred             HHHHHHHHHHHHHHHhcCC--CcEEEEEcCccccchhhcCCC
Confidence            9999999999999999985  899999999999 66665543

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.76  E-value=1.3e-17  Score=150.30  Aligned_cols=185  Identities=9%  Similarity=-0.005  Sum_probs=127.4

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHh-hcCcEEEE--cCHHH---------HHHHHHHHHhhCC---CCc---e
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLV-QSSKLFYQ--NCWDK---------ANDAISKILTEKP---SAQ---C   86 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~-~~g~~v~~--r~~~~---------~~~~~~~l~~~~~---~~~---~   86 (292)
                      +++++ ||||+      ++||..+   +.+|. +.|+.|++  |+...         .+...+.+.+...   ..+   +
T Consensus         2 ~m~vl-VTGat------G~iG~~l---~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (397)
T 1gy8_A            2 HMRVL-VCGGA------GYIGSHF---VRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYA   71 (397)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCC
T ss_pred             CCEEE-EECCC------CHHHHHH---HHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceE
Confidence            45677 99999      9999999   66666 77777764  54332         2333222333211   124   8


Q ss_pred             EEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEE
Q psy4251          87 IAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARV  166 (292)
Q Consensus        87 ~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~i  166 (292)
                      .++++|++|.+++++++++    ++++|+||||||.....  .+.++++..+++|+.++..+++++..    .+.  ++|
T Consensus        72 ~~~~~Dl~d~~~~~~~~~~----~~~~d~vih~A~~~~~~--~~~~~~~~~~~~Nv~g~~~ll~a~~~----~~~--~~i  139 (397)
T 1gy8_A           72 ALEVGDVRNEDFLNGVFTR----HGPIDAVVHMCAFLAVG--ESVRDPLKYYDNNVVGILRLLQAMLL----HKC--DKI  139 (397)
T ss_dssp             EEEESCTTCHHHHHHHHHH----SCCCCEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHH----TTC--CEE
T ss_pred             EEEECCCCCHHHHHHHHHh----cCCCCEEEECCCccCcC--cchhhHHHHHHHHhHHHHHHHHHHHH----hCC--CEE
Confidence            8999999999998887664    45699999999975321  13456788999999999999998643    344  799


Q ss_pred             EEEcCcccccccCCCCCCC--ccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         167 VVVSSESHRYSYITKDTIS--KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       167 V~vsS~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      |++||...+.... .....  ...+.  +.....+...|+.+|++.+.+++.++.++   |++++.+.||.|-
T Consensus       140 v~~SS~~v~g~~~-~~~~~~~~~~~~--E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---gi~~~ilRp~~v~  206 (397)
T 1gy8_A          140 IFSSSAAIFGNPT-MGSVSTNAEPID--INAKKSPESPYGESKLIAERMIRDCAEAY---GIKGICLRYFNAC  206 (397)
T ss_dssp             EEEEEGGGTBSCC-C-----CCCCBC--TTSCCBCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEE
T ss_pred             EEECCHHHhCCCC-cccccccccCcC--ccCCCCCCCchHHHHHHHHHHHHHHHHHH---CCcEEEEecccee
Confidence            9999975543221 00000  00000  11122356789999999999999999887   6999999999987

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.76  E-value=2.2e-18  Score=152.58  Aligned_cols=184  Identities=9%  Similarity=0.051  Sum_probs=125.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+.++++++ ||||+      ++||..+   +.+|.+.|  +.|++++........+.+.......++.++++|++|.++
T Consensus        20 ~~~~~~~vl-VtGat------G~iG~~l---~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~   89 (346)
T 4egb_A           20 FQSNAMNIL-VTGGA------GFIGSNF---VHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGEL   89 (346)
T ss_dssp             ----CEEEE-EETTT------SHHHHHH---HHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHH
T ss_pred             cccCCCeEE-EECCc------cHHHHHH---HHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHH
Confidence            346788888 99999      9999999   55566776  777653311111111222222223589999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.++++..     ++|+|||+||.....  .+.++.+..+++|+.++..+++++...    +.  .+||++||...+...
T Consensus        90 ~~~~~~~~-----~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~~~~~ll~a~~~~----~~--~~~v~~SS~~vy~~~  156 (346)
T 4egb_A           90 LEHVIKER-----DVQVIVNFAAESHVD--RSIENPIPFYDTNVIGTVTLLELVKKY----PH--IKLVQVSTDEVYGSL  156 (346)
T ss_dssp             HHHHHHHH-----TCCEEEECCCCC-----------CHHHHHHTHHHHHHHHHHHHS----TT--SEEEEEEEGGGGCCC
T ss_pred             HHHHHhhc-----CCCEEEECCcccchh--hhhhCHHHHHHHHHHHHHHHHHHHHhc----CC--CEEEEeCchHHhCCC
Confidence            99998774     589999999986422  245667889999999999998887543    34  799999998665433


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .....++.       .....+...|+.+|.+.+.+++.++++.   |++++.+.||.+-
T Consensus       157 ~~~~~~~E-------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~  205 (346)
T 4egb_A          157 GKTGRFTE-------ETPLAPNSPYSSSKASADMIALAYYKTY---QLPVIVTRCSNNY  205 (346)
T ss_dssp             CSSCCBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEE
T ss_pred             CcCCCcCC-------CCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeeccee
Confidence            11111111       2223356789999999999999999876   6999999999988

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.75  E-value=1.8e-17  Score=146.48  Aligned_cols=187  Identities=10%  Similarity=0.003  Sum_probs=131.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH-HHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW-DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ++++ ||||+      ++||..+   +.+|.+.|+.|++  |+. ....+..+++..   ..++.++++|++|.++++++
T Consensus         2 ~~vl-VTGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~   68 (347)
T 1orr_A            2 AKLL-ITGGC------GFLGSNL---ASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRL   68 (347)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHH
T ss_pred             cEEE-EeCCC------chhHHHH---HHHHHhCCCEEEEEeCCCccCchhhhhhhcc---CCceEEEEcCCCCHHHHHHH
Confidence            4567 99999      9999999   6666677877764  431 222233444443   23688999999999999988


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++..     ++|+||||||....  +.+.++++..+++|+.++..+++++.+...   .  ++||++||...+.......
T Consensus        69 ~~~~-----~~d~vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~---~--~~iv~~SS~~v~g~~~~~~  136 (347)
T 1orr_A           69 ITKY-----MPDSCFHLAGQVAM--TTSIDNPCMDFEINVGGTLNLLEAVRQYNS---N--CNIIYSSTNKVYGDLEQYK  136 (347)
T ss_dssp             HHHH-----CCSEEEECCCCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHHHCT---T--CEEEEEEEGGGGTTCTTSC
T ss_pred             Hhcc-----CCCEEEECCcccCh--hhhhhCHHHHHHHHHHHHHHHHHHHHHhCC---C--ceEEEeccHHHhCCCCcCC
Confidence            8763     69999999997531  123456788999999999999999987642   2  6999999986554321100


Q ss_pred             ----CCCccc----cCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         183 ----TISKSV----LSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       183 ----~~~~~~----~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                          ...|..    ...++.....+...|+.+|.+.+.+++.+++++   |++++.+.||.|. +..
T Consensus       137 ~~e~~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~g~~~  200 (347)
T 1orr_A          137 YNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF---GLNTVVFRHSSMYGGRQ  200 (347)
T ss_dssp             EEECSSCEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTC
T ss_pred             cccccccccccccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEccCceeCcCC
Confidence                000000    000011223356789999999999999999886   6999999999999 654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.75  E-value=4.4e-18  Score=149.92  Aligned_cols=176  Identities=9%  Similarity=-0.035  Sum_probs=123.8

Q ss_pred             CCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          17 LHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        17 ~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      +.+..+++|++++ ||||+      ++||.++   +.+|.+.|+.|++  |+.....+..+++      .++.++.+|++
T Consensus        12 ~~~~~~~~~~~vl-VTGas------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~l------~~v~~~~~Dl~   75 (330)
T 2pzm_A           12 SGLVPRGSHMRIL-ITGGA------GCLGSNL---IEHWLPQGHEILVIDNFATGKREVLPPV------AGLSVIEGSVT   75 (330)
T ss_dssp             --CCSTTTCCEEE-EETTT------SHHHHHH---HHHHGGGTCEEEEEECCSSSCGGGSCSC------TTEEEEECCTT
T ss_pred             cCCcccCCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCCccchhhhhcc------CCceEEEeeCC
Confidence            3445789999998 99999      9999999   6667788887764  6432211111111      36888999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      |.++++++++++     ++|+||||||.....   +.++++  +++|+.++..+++++..    .+.  ++||++||...
T Consensus        76 d~~~~~~~~~~~-----~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~~l~~a~~~----~~~--~~iV~~SS~~~  139 (330)
T 2pzm_A           76 DAGLLERAFDSF-----KPTHVVHSAAAYKDP---DDWAED--AATNVQGSINVAKAASK----AGV--KRLLNFQTALC  139 (330)
T ss_dssp             CHHHHHHHHHHH-----CCSEEEECCCCCSCT---TCHHHH--HHHHTHHHHHHHHHHHH----HTC--SEEEEEEEGGG
T ss_pred             CHHHHHHHHhhc-----CCCEEEECCccCCCc---cccChh--HHHHHHHHHHHHHHHHH----cCC--CEEEEecCHHH
Confidence            999999988776     699999999986432   445555  99999999999999874    234  79999999876


Q ss_pred             ccccCCCC-CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeE-EEEecCCc
Q psy4251         175 RYSYITKD-TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIA-LSSRHCCW  235 (292)
Q Consensus       175 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~-v~~v~PG~  235 (292)
                      +....... .++.+.         .+...|+.+|++.+.+++.+  ++....|| ++.+.||.
T Consensus       140 ~~~~~~~~~~~~E~~---------~~~~~Y~~sK~~~e~~~~~~--~~~~~~iR~~~v~gp~~  191 (330)
T 2pzm_A          140 YGRPATVPIPIDSPT---------APFTSYGISKTAGEAFLMMS--DVPVVSLRLANVTGPRL  191 (330)
T ss_dssp             GCSCSSSSBCTTCCC---------CCCSHHHHHHHHHHHHHHTC--SSCEEEEEECEEECTTC
T ss_pred             hCCCccCCCCcCCCC---------CCCChHHHHHHHHHHHHHHc--CCCEEEEeeeeeECcCC
Confidence            53321000 011111         25578999999999999877  44334566 66777775

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.75  E-value=1e-17  Score=146.74  Aligned_cols=173  Identities=12%  Similarity=0.092  Sum_probs=127.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +-++++ ||||+      ++||..+   +.+|.+.|+.|++  |+.+. +.    +       ++.++.+|++|.+++.+
T Consensus        11 ~~~~vl-VTGat------G~iG~~l---~~~L~~~G~~V~~~~r~~~~-~~----l-------~~~~~~~Dl~d~~~~~~   68 (321)
T 2pk3_A           11 GSMRAL-ITGVA------GFVGKYL---ANHLTEQNVEVFGTSRNNEA-KL----P-------NVEMISLDIMDSQRVKK   68 (321)
T ss_dssp             --CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCTTC-CC----T-------TEEEEECCTTCHHHHHH
T ss_pred             CcceEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEecCCcc-cc----c-------eeeEEECCCCCHHHHHH
Confidence            346777 99999      9999999   5666677877764  55432 11    1       57889999999999998


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC-C
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI-T  180 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~-~  180 (292)
                      +++.     +++|+||||||....  ..+.++++..+++|+.++..+++++ +.+.  +.  ++||++||...+.... .
T Consensus        69 ~~~~-----~~~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~--~~--~~iv~~SS~~v~g~~~~~  136 (321)
T 2pk3_A           69 VISD-----IKPDYIFHLAAKSSV--KDSWLNKKGTFSTNVFGTLHVLDAV-RDSN--LD--CRILTIGSSEEYGMILPE  136 (321)
T ss_dssp             HHHH-----HCCSEEEECCSCCCH--HHHTTCHHHHHHHHHHHHHHHHHHH-HHHT--CC--CEEEEEEEGGGTBSCCGG
T ss_pred             HHHh-----cCCCEEEEcCcccch--hhhhhcHHHHHHHHHHHHHHHHHHH-HHhC--CC--CeEEEEccHHhcCCCCCC
Confidence            8776     369999999997532  2345578899999999999999998 5442  34  8999999986553210 0


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ...++.       .....+...|+.+|++.+.+++.+++++   |++++.+.||.+. +..
T Consensus       137 ~~~~~E-------~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~g~~~  187 (321)
T 2pk3_A          137 ESPVSE-------ENQLRPMSPYGVSKASVGMLARQYVKAY---GMDIIHTRTFNHIGPGQ  187 (321)
T ss_dssp             GCSBCT-------TSCCBCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECTTC
T ss_pred             CCCCCC-------CCCCCCCCccHHHHHHHHHHHHHHHHHc---CCCEEEEEeCcccCcCC
Confidence            001111       1122356789999999999999999875   6999999999988 544

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.74  E-value=1.3e-17  Score=148.14  Aligned_cols=181  Identities=10%  Similarity=0.018  Sum_probs=130.3

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH----HHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW----DKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~----~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      +++++++ ||||+      ++||..+   +.+|.+.|+.|++  |+.    +.+++..+++.... ..++.++++|++|.
T Consensus        25 ~~~~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~   93 (352)
T 1sb8_A           25 AQPKVWL-ITGVA------GFIGSNL---LETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQ-WSNFKFIQGDIRNL   93 (352)
T ss_dssp             HSCCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHH-HTTEEEEECCTTSH
T ss_pred             ccCCeEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCCccchhhHHHHhhhccccc-CCceEEEECCCCCH
Confidence            5678888 99999      9999999   5566677877764  543    33443333221100 24788999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++.++++       ++|+|||+||.....  .+.++++..+++|+.++..+++++.+.    +.  ++||++||...+.
T Consensus        94 ~~~~~~~~-------~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~--~~~v~~SS~~~~~  158 (352)
T 1sb8_A           94 DDCNNACA-------GVDYVLHQAALGSVP--RSINDPITSNATNIDGFLNMLIAARDA----KV--QSFTYAASSSTYG  158 (352)
T ss_dssp             HHHHHHHT-------TCSEEEECCSCCCHH--HHHHCHHHHHHHHTHHHHHHHHHHHHT----TC--SEEEEEEEGGGGT
T ss_pred             HHHHHHhc-------CCCEEEECCcccCch--hhhhCHHHHHHHHHHHHHHHHHHHHHc----CC--CEEEEeccHHhcC
Confidence            88887754       689999999975311  134567889999999999999988652    34  7999999987654


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .... ..++.+..       ..+...|+.+|++.+.+++.+++++   |++++.+.||.+- +..
T Consensus       159 ~~~~-~~~~E~~~-------~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilRp~~v~G~~~  212 (352)
T 1sb8_A          159 DHPG-LPKVEDTI-------GKPLSPYAVTKYVNELYADVFSRCY---GFSTIGLRYFNVFGRRQ  212 (352)
T ss_dssp             TCCC-SSBCTTCC-------CCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECCEECTTC
T ss_pred             CCCC-CCCCCCCC-------CCCCChhHHHHHHHHHHHHHHHHHc---CCCEEEEEECceeCcCC
Confidence            3211 11111111       2256789999999999999999886   6999999999998 543

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.74  E-value=9.3e-17  Score=145.00  Aligned_cols=193  Identities=10%  Similarity=-0.011  Sum_probs=128.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHH----------------HHHHHHHhhCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKAN----------------DAISKILTEKP   82 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~----------------~~~~~l~~~~~   82 (292)
                      ...++++++ ||||+      +.||.++   +.+|+++|+.|++  |+.....                +...++.... 
T Consensus         7 ~~~~~~~vl-VTG~t------GfIG~~l---~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-   75 (404)
T 1i24_A            7 HHHHGSRVM-VIGGD------GYCGWAT---ALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-   75 (404)
T ss_dssp             -----CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-
T ss_pred             cccCCCeEE-EeCCC------cHHHHHH---HHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhcc-
Confidence            345678888 99999      9999999   6667777877764  5433221                1122221111 


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCC-CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK  161 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~-~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~  161 (292)
                      ..++.++++|++|.+++.++++..     ++|+||||||..... ...+.+.++..+++|+.++..+++++.+.-   ..
T Consensus        76 ~~~v~~~~~Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~---~~  147 (404)
T 1i24_A           76 GKSIELYVGDICDFEFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG---EE  147 (404)
T ss_dssp             CCCCEEEESCTTSHHHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC---TT
T ss_pred             CCceEEEECCCCCHHHHHHHHhcc-----CCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhC---CC
Confidence            347889999999999999888775     599999999976421 112444566789999999999999886531   12


Q ss_pred             CCcEEEEEcCcccccccCCCCCCCccccCcC-------CCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCC
Q psy4251         162 LFARVVVVSSESHRYSYITKDTISKSVLSVE-------NYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCC  234 (292)
Q Consensus       162 ~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG  234 (292)
                        .+||++||...+....  ..+..+.+..+       ......+...|+.||++.+.+++.+++++   |++++++.||
T Consensus       148 --~~~V~~SS~~vyg~~~--~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~ivrp~  220 (404)
T 1i24_A          148 --CHLVKLGTMGEYGTPN--IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQG  220 (404)
T ss_dssp             --CEEEEECCGGGGCCCS--SCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEEC
T ss_pred             --cEEEEeCcHHHhCCCC--CCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhc---CCeEEEEecc
Confidence              4999999976543221  11111100000       00122356789999999999999998887   6999999999


Q ss_pred             ccc-cc
Q psy4251         235 WKI-TV  239 (292)
Q Consensus       235 ~v~-~~  239 (292)
                      .|- +-
T Consensus       221 ~v~Gp~  226 (404)
T 1i24_A          221 VVYGVK  226 (404)
T ss_dssp             EEECSC
T ss_pred             eeeCCC
Confidence            998 53

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.73  E-value=5.9e-18  Score=149.16  Aligned_cols=177  Identities=12%  Similarity=0.131  Sum_probs=125.0

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEEE--cCHH--HHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFYQ--NCWD--KANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~~--r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +++++ ||||+      ++||..+++   +|.+.|  +.|++  |+..  ..+. .+++   ....++.++++|++|.++
T Consensus         3 ~m~vl-VTGat------G~iG~~l~~---~L~~~g~~~~V~~~~r~~~~~~~~~-~~~~---~~~~~~~~~~~Dl~d~~~   68 (336)
T 2hun_A            3 SMKLL-VTGGM------GFIGSNFIR---YILEKHPDWEVINIDKLGYGSNPAN-LKDL---EDDPRYTFVKGDVADYEL   68 (336)
T ss_dssp             CCEEE-EETTT------SHHHHHHHH---HHHHHCTTCEEEEEECCCTTCCGGG-GTTT---TTCTTEEEEECCTTCHHH
T ss_pred             CCeEE-EECCC------chHHHHHHH---HHHHhCCCCEEEEEecCcccCchhH-Hhhh---ccCCceEEEEcCCCCHHH
Confidence            45677 99999      999999944   455554  66654  4321  1111 1111   113478899999999998


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +++++       .++|+||||||...  .+.+.++++..+++|+.++..+++++.+.   ...  ++||++||...+...
T Consensus        69 ~~~~~-------~~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~---~~~--~~iv~~SS~~vyg~~  134 (336)
T 2hun_A           69 VKELV-------RKVDGVVHLAAESH--VDRSISSPEIFLHSNVIGTYTLLESIRRE---NPE--VRFVHVSTDEVYGDI  134 (336)
T ss_dssp             HHHHH-------HTCSEEEECCCCCC--HHHHHHCTHHHHHHHHHHHHHHHHHHHHH---CTT--SEEEEEEEGGGGCCC
T ss_pred             HHHHh-------hCCCEEEECCCCcC--hhhhhhCHHHHHHHHHHHHHHHHHHHHHh---CCC--cEEEEeccHHHHCCC
Confidence            88876       36999999999753  12234567889999999999999999876   223  799999998654322


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      . ...++.       .....+...|+.+|++.+.+++.++.++   |++++.+.||.|. +..
T Consensus       135 ~-~~~~~E-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~g~~~  186 (336)
T 2hun_A          135 L-KGSFTE-------NDRLMPSSPYSATKAASDMLVLGWTRTY---NLNASITRCTNNYGPYQ  186 (336)
T ss_dssp             S-SSCBCT-------TBCCCCCSHHHHHHHHHHHHHHHHHHHT---TCEEEEEEECEEESTTC
T ss_pred             C-CCCcCC-------CCCCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEeeeeeeCcCC
Confidence            1 011111       1122356789999999999999999876   6999999999998 553

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.73  E-value=7.5e-18  Score=149.97  Aligned_cols=186  Identities=10%  Similarity=0.102  Sum_probs=128.4

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEEE--cCH--HHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFYQ--NCW--DKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +++ ||||+      ++||.++++.   |.+. |+.|++  |+.  ...+. .+++.   ...++.++++|++|.+++.+
T Consensus         2 kvl-VTGas------G~iG~~l~~~---L~~~~g~~V~~~~r~~~~~~~~~-~~~~~---~~~~~~~~~~Dl~d~~~~~~   67 (361)
T 1kew_A            2 KIL-ITGGA------GFIGSAVVRH---IIKNTQDTVVNIDKLTYAGNLES-LSDIS---ESNRYNFEHADICDSAEITR   67 (361)
T ss_dssp             EEE-EESTT------SHHHHHHHHH---HHHHCSCEEEEEECCCTTCCGGG-GTTTT---TCTTEEEEECCTTCHHHHHH
T ss_pred             EEE-EECCC------chHhHHHHHH---HHhcCCCeEEEEecCCCCCchhh-hhhhh---cCCCeEEEECCCCCHHHHHH
Confidence            466 99999      9999999554   5555 666654  542  11111 11111   13478999999999999998


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-----CCCCcEEEEEcCccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----AKLFARVVVVSSESHRY  176 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-----~~~~~~iV~vsS~~~~~  176 (292)
                      ++++.     ++|+||||||...  .+.+.++++..+++|+.++..+++++.+.|..-     ..  ++||++||...+.
T Consensus        68 ~~~~~-----~~d~vih~A~~~~--~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~--~~iv~~SS~~v~g  138 (361)
T 1kew_A           68 IFEQY-----QPDAVMHLAAESH--VDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNN--FRFHHISTDEVYG  138 (361)
T ss_dssp             HHHHH-----CCSEEEECCSCCC--HHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHH--CEEEEEEEGGGGC
T ss_pred             HHhhc-----CCCEEEECCCCcC--hhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccC--ceEEEeCCHHHhC
Confidence            88763     6999999999753  122445678899999999999999999987531     12  4999999976543


Q ss_pred             ccCCCCC----CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         177 SYITKDT----ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       177 ~~~~~~~----~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .......    .++..+.  +.....+...|+.+|++.+.+++.+++++   |++++.+.||.|. +..
T Consensus       139 ~~~~~~~~~~~~~~~~~~--E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~  202 (361)
T 1kew_A          139 DLPHPDEVENSVTLPLFT--ETTAYAPSSPYSASKASSDHLVRAWRRTY---GLPTIVTNCSNNYGPYH  202 (361)
T ss_dssp             CCCCGGGSCTTSCCCCBC--TTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEESTTC
T ss_pred             CCcccccccccccCCCCC--CCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCcEEEEeeceeECCCC
Confidence            2110000    0000011  11223356789999999999999999887   6999999999998 554

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.73  E-value=6.8e-19  Score=148.12  Aligned_cols=154  Identities=11%  Similarity=-0.054  Sum_probs=115.2

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +++|+++ ||||+      +|||+++   +.+|+++|+  .|+  .|+.++.++..        ..++.++++|++|.++
T Consensus        16 m~~~~vl-VtGas------g~iG~~l---~~~L~~~G~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~d~~~   77 (242)
T 2bka_A           16 MQNKSVF-ILGAS------GETGRVL---LKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDD   77 (242)
T ss_dssp             HTCCEEE-EECTT------SHHHHHH---HHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGG
T ss_pred             hcCCeEE-EECCC------cHHHHHH---HHHHHcCCCCCEEEEEEcCCCCccccc--------cCCceEEecCcCCHHH
Confidence            4678888 99999      9999999   555667777  665  46644322110        1267889999999988


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.++++       ++|+||||||....     .++++..+++|+.++..+++++.    +...  ++||++||..+... 
T Consensus        78 ~~~~~~-------~~d~vi~~ag~~~~-----~~~~~~~~~~n~~~~~~~~~~~~----~~~~--~~iv~~SS~~~~~~-  138 (242)
T 2bka_A           78 YASAFQ-------GHDVGFCCLGTTRG-----KAGAEGFVRVDRDYVLKSAELAK----AGGC--KHFNLLSSKGADKS-  138 (242)
T ss_dssp             GGGGGS-------SCSEEEECCCCCHH-----HHHHHHHHHHHTHHHHHHHHHHH----HTTC--CEEEEECCTTCCTT-
T ss_pred             HHHHhc-------CCCEEEECCCcccc-----cCCcccceeeeHHHHHHHHHHHH----HCCC--CEEEEEccCcCCCC-
Confidence            776643       69999999997521     13467889999999988888754    3344  79999999866532 


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCe-EEEEecCCccc-ccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI-ALSSRHCCWKI-TVS  240 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi-~v~~v~PG~v~-~~~  240 (292)
                                          +...|+.+|++++.+++.+       ++ ++++|+||.+. +..
T Consensus       139 --------------------~~~~Y~~sK~~~e~~~~~~-------~~~~~~~vrpg~v~~~~~  175 (242)
T 2bka_A          139 --------------------SNFLYLQVKGEVEAKVEEL-------KFDRYSVFRPGVLLCDRQ  175 (242)
T ss_dssp             --------------------CSSHHHHHHHHHHHHHHTT-------CCSEEEEEECCEEECTTG
T ss_pred             --------------------CcchHHHHHHHHHHHHHhc-------CCCCeEEEcCceecCCCC
Confidence                                3457999999999888753       45 89999999999 654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.72  E-value=9.7e-17  Score=133.19  Aligned_cols=149  Identities=9%  Similarity=0.034  Sum_probs=108.1

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHh-hcCcEEE--EcCHH-HHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLV-QSSKLFY--QNCWD-KANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~-~~g~~v~--~r~~~-~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      |+++ ||||+      +|||+++   +.+|+ ..|+.|+  .|+.+ +++++.    +.  ..++.++++|++|.+++++
T Consensus         6 k~vl-VtGas------g~iG~~~---~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~~D~~d~~~~~~   69 (221)
T 3r6d_A            6 XYIT-ILGAA------GQIAQXL---TATLLTYTDMHITLYGRQLKTRIPPEI----ID--HERVTVIEGSFQNPGXLEQ   69 (221)
T ss_dssp             SEEE-EESTT------SHHHHHH---HHHHHHHCCCEEEEEESSHHHHSCHHH----HT--STTEEEEECCTTCHHHHHH
T ss_pred             EEEE-EEeCC------cHHHHHH---HHHHHhcCCceEEEEecCccccchhhc----cC--CCceEEEECCCCCHHHHHH
Confidence            5677 99999      9999999   55666 6777765  48877 554433    22  4578999999999999888


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++       .+|+||||||..                 |+.     ++.+++.+++.+.  ++||++||..+...... 
T Consensus        70 ~~~-------~~d~vv~~ag~~-----------------n~~-----~~~~~~~~~~~~~--~~iv~iSs~~~~~~~~~-  117 (221)
T 3r6d_A           70 AVT-------NAEVVFVGAMES-----------------GSD-----MASIVKALSRXNI--RRVIGVSMAGLSGEFPV-  117 (221)
T ss_dssp             HHT-------TCSEEEESCCCC-----------------HHH-----HHHHHHHHHHTTC--CEEEEEEETTTTSCSCH-
T ss_pred             HHc-------CCCEEEEcCCCC-----------------Chh-----HHHHHHHHHhcCC--CeEEEEeeceecCCCCc-
Confidence            764       589999999953                 222     7888888887766  89999999876653210 


Q ss_pred             CCCCccccCcCCCCCChhhh-HHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-c
Q psy4251         182 DTISKSVLSVENYSDFWAMT-AYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-T  238 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~-~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~  238 (292)
                         ....+..      .... .|+.+|.+++.+.+.       .|++++.|+||++. +
T Consensus       118 ---~~~~~~~------~~~~~~y~~~K~~~e~~~~~-------~~i~~~~vrpg~v~~~  160 (221)
T 3r6d_A          118 ---ALEKWTF------DNLPISYVQGERQARNVLRE-------SNLNYTILRLTWLYND  160 (221)
T ss_dssp             ---HHHHHHH------HTSCHHHHHHHHHHHHHHHH-------SCSEEEEEEECEEECC
T ss_pred             ---ccccccc------cccccHHHHHHHHHHHHHHh-------CCCCEEEEechhhcCC
Confidence               0000000      0011 799999999887753       47999999999998 6

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.72  E-value=8.9e-18  Score=143.53  Aligned_cols=162  Identities=16%  Similarity=0.063  Sum_probs=120.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      ++||..+   +.+|.+.|+.|++  |+..+.         .  ...+.++++|++|.+++.+++
T Consensus         3 ~~il-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~---------~--~~~~~~~~~Dl~d~~~~~~~~   61 (267)
T 3ay3_A            3 NRLL-VTGAA------GGVGSAI---RPHLGTLAHEVRLSDIVDLGA---------A--EAHEEIVACDLADAQAVHDLV   61 (267)
T ss_dssp             EEEE-EESTT------SHHHHHH---GGGGGGTEEEEEECCSSCCCC---------C--CTTEEECCCCTTCHHHHHHHH
T ss_pred             ceEE-EECCC------CHHHHHH---HHHHHhCCCEEEEEeCCCccc---------c--CCCccEEEccCCCHHHHHHHH
Confidence            5677 99999      9999999   6667788888775  543210         0  135788999999998888775


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      +       .+|+||||||..      +.+.++..+++|+.++..+++++.+    .+.  ++||++||............
T Consensus        62 ~-------~~d~vi~~a~~~------~~~~~~~~~~~n~~~~~~l~~a~~~----~~~--~~iv~~SS~~~~~~~~~~~~  122 (267)
T 3ay3_A           62 K-------DCDGIIHLGGVS------VERPWNDILQANIIGAYNLYEAARN----LGK--PRIVFASSNHTIGYYPRTTR  122 (267)
T ss_dssp             T-------TCSEEEECCSCC------SCCCHHHHHHHTHHHHHHHHHHHHH----TTC--CEEEEEEEGGGSTTSBTTSC
T ss_pred             c-------CCCEEEECCcCC------CCCCHHHHHHHHHHHHHHHHHHHHH----hCC--CEEEEeCCHHHhCCCCCCCC
Confidence            4       489999999975      3456789999999999999998864    234  79999999876543211111


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ++.+       ....+...|+.+|++.+.+++.++++   .|++++.+.||.+-
T Consensus       123 ~~E~-------~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~  166 (267)
T 3ay3_A          123 IDTE-------VPRRPDSLYGLSKCFGEDLASLYYHK---FDIETLNIRIGSCF  166 (267)
T ss_dssp             BCTT-------SCCCCCSHHHHHHHHHHHHHHHHHHT---TCCCEEEEEECBCS
T ss_pred             CCCC-------CCCCCCChHHHHHHHHHHHHHHHHHH---cCCCEEEEeceeec
Confidence            1111       12225678999999999999988653   47999999999984

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.72  E-value=1.2e-16  Score=142.64  Aligned_cols=179  Identities=11%  Similarity=-0.001  Sum_probs=119.8

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHH-HHHHHHHHhhC--CCCceEEEEccCCChHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKA-NDAISKILTEK--PSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~-~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v   99 (292)
                      +++++ ||||+      ++||.++   +.+|.+.|+.|++  |+.+.. .+..+++.+..  .+.++.++++|++|.+++
T Consensus         1 m~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~   70 (372)
T 1db3_A            1 SKVAL-ITGVT------GQDGSYL---AEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNL   70 (372)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHH
T ss_pred             CCEEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHH
Confidence            46777 99999      9999999   5556677877764  554331 11122221110  134788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      .++++.+     ++|+||||||....  ..+.++++..+++|+.++..+++++.+...+ +.  ++||++||...+....
T Consensus        71 ~~~~~~~-----~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~--~~iv~~SS~~v~g~~~  140 (372)
T 1db3_A           71 TRILREV-----QPDEVYNLGAMSHV--AVSFESPEYTADVDAMGTLRLLEAIRFLGLE-KK--TRFYQASTSELYGLVQ  140 (372)
T ss_dssp             HHHHHHH-----CCSEEEECCCCCTT--TTTTSCHHHHHHHHTHHHHHHHHHHHHTTCT-TT--CEEEEEEEGGGGTTCC
T ss_pred             HHHHHhc-----CCCEEEECCcccCc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCC-CC--cEEEEeCChhhhCCCC
Confidence            9988776     68999999997542  2355678899999999999999998875432 23  7999999986654321


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCC
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCC  234 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG  234 (292)
                       ...++.       .....+...|+.+|++.+.+++.++.++.   +.+..+.|.
T Consensus       141 -~~~~~E-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~---~~~~~~r~~  184 (372)
T 1db3_A          141 -EIPQKE-------TTPFYPRSPYAVAKLYAYWITVNYRESYG---MYACNGILF  184 (372)
T ss_dssp             -SSSBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHHC---CCEEEEEEC
T ss_pred             -CCCCCc-------cCCCCCCChHHHHHHHHHHHHHHHHHHhC---CCeEEEEEC
Confidence             001111       11222567899999999999999998863   444444443

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.72  E-value=4e-17  Score=144.49  Aligned_cols=179  Identities=12%  Similarity=0.085  Sum_probs=124.5

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHH------HHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDK------ANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~------~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      +++++ ||||+      ++||..+   +.+|.+.|+.|++  |+...      ..+..+++.+.. +.++.++++|++|.
T Consensus         2 ~~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~   70 (348)
T 1ek6_A            2 AEKVL-VTGGA------GYIGSHT---VLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQ   70 (348)
T ss_dssp             CSEEE-EETTT------SHHHHHH---HHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCH
T ss_pred             CCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCH
Confidence            46788 99999      9999999   5556667776654  43211      122233333211 34788999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++++.     ++|+|||+||.....  .+.++++..+++|+.++..+++++.    +.+.  ++||++||...+.
T Consensus        71 ~~~~~~~~~~-----~~d~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~iv~~SS~~~~g  137 (348)
T 1ek6_A           71 GALQRLFKKY-----SFMAVIHFAGLKAVG--ESVQKPLDYYRVNLTGTIQLLEIMK----AHGV--KNLVFSSSATVYG  137 (348)
T ss_dssp             HHHHHHHHHC-----CEEEEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----HTTC--CEEEEEEEGGGGC
T ss_pred             HHHHHHHHhc-----CCCEEEECCCCcCcc--chhhchHHHHHHHHHHHHHHHHHHH----HhCC--CEEEEECcHHHhC
Confidence            9988887652     699999999975321  1345678899999999999988754    3344  7999999976653


Q ss_pred             ccCCCCCCCccccCcCCCCCChh-hhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWA-MTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .. ....++.+.       ...+ ...|+.+|++.+.+++.++++  ..++++..+.||.+-
T Consensus       138 ~~-~~~~~~E~~-------~~~p~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~lR~~~v~  189 (348)
T 1ek6_A          138 NP-QYLPLDEAH-------PTGGCTNPYGKSKFFIEEMIRDLCQA--DKTWNAVLLRYFNPT  189 (348)
T ss_dssp             SC-SSSSBCTTS-------CCCCCSSHHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECEEE
T ss_pred             CC-CCCCcCCCC-------CCCCCCCchHHHHHHHHHHHHHHHhc--CCCcceEEEeecccc
Confidence            21 111111111       1113 678999999999999999887  336999999998776

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.72  E-value=2.1e-17  Score=146.00  Aligned_cols=181  Identities=19%  Similarity=0.095  Sum_probs=127.4

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-------cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEE
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-------KLFY--QNCWDKANDAISKILTEKPSAQCIAME   90 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-------~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~   90 (292)
                      ..+++|++++ ||||+      ++||..+   +.+|.+.|       +.|+  .|+.++...        ....++.+++
T Consensus         9 ~~~~~~~~vl-VtGa~------G~iG~~l---~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~--------~~~~~~~~~~   70 (342)
T 2hrz_A            9 NLYFQGMHIA-IIGAA------GMVGRKL---TQRLVKDGSLGGKPVEKFTLIDVFQPEAPA--------GFSGAVDARA   70 (342)
T ss_dssp             CSCCSCEEEE-EETTT------SHHHHHH---HHHHHHHCEETTEEEEEEEEEESSCCCCCT--------TCCSEEEEEE
T ss_pred             CCCccCCEEE-EECCC------cHHHHHH---HHHHHhcCCcccCCCceEEEEEccCCcccc--------ccCCceeEEE
Confidence            3567899988 99999      9999999   55565666       5555  355322111        1145788999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEE
Q psy4251          91 LDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVV  169 (292)
Q Consensus        91 ~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~v  169 (292)
                      +|++|.++++++++      +++|+||||||...   ..+.++++..+++|+.++..+++++.+...++ ..  ++||++
T Consensus        71 ~Dl~d~~~~~~~~~------~~~d~vih~A~~~~---~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~--~~iv~~  139 (342)
T 2hrz_A           71 ADLSAPGEAEKLVE------ARPDVIFHLAAIVS---GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYK--PRVVFT  139 (342)
T ss_dssp             CCTTSTTHHHHHHH------TCCSEEEECCCCCH---HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCC--CEEEEE
T ss_pred             cCCCCHHHHHHHHh------cCCCEEEECCccCc---ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCC--cEEEEe
Confidence            99999999888765      36999999999753   12456788999999999999999988754322 13  799999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEec--CCccc
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRH--CCWKI  237 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~--PG~v~  237 (292)
                      ||...+....+ ..++.       +....+...|+.+|++.+.+++.++.+..  ...+|++.+.  ||.+.
T Consensus       140 SS~~~~~~~~~-~~~~E-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~  203 (342)
T 2hrz_A          140 SSIAVFGAPLP-YPIPD-------EFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPN  203 (342)
T ss_dssp             EEGGGCCSSCC-SSBCT-------TCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCC
T ss_pred             CchHhhCCCCC-CCcCC-------CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCc
Confidence            99866543211 11111       12223567899999999999999887642  2246777777  88754

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.72  E-value=7.1e-17  Score=142.93  Aligned_cols=170  Identities=9%  Similarity=-0.063  Sum_probs=120.2

Q ss_pred             CCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          17 LHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        17 ~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      +.+..++++|+++ ||||+      ++||..+   +.+|.+.|+.|++  |+.+.              .++.++++|++
T Consensus        11 ~~~~~~~~~~~vl-VtGat------G~iG~~l---~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~   66 (347)
T 4id9_A           11 SSGLVPRGSHMIL-VTGSA------GRVGRAV---VAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLE   66 (347)
T ss_dssp             ----------CEE-EETTT------SHHHHHH---HHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTT
T ss_pred             CCcccccCCCEEE-EECCC------ChHHHHH---HHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcC
Confidence            3455778899999 99999      9999999   6666677777764  54322              36778999999


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      |.+++.++++       .+|+|||+|+...    .+.+.++..+++|+.++..+++++..    .+.  ++||++||...
T Consensus        67 d~~~~~~~~~-------~~d~vih~A~~~~----~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~--~~~V~~SS~~v  129 (347)
T 4id9_A           67 DGQALSDAIM-------GVSAVLHLGAFMS----WAPADRDRMFAVNVEGTRRLLDAASA----AGV--RRFVFASSGEV  129 (347)
T ss_dssp             CHHHHHHHHT-------TCSEEEECCCCCC----SSGGGHHHHHHHHTHHHHHHHHHHHH----TTC--SEEEEEEEGGG
T ss_pred             CHHHHHHHHh-------CCCEEEECCcccC----cchhhHHHHHHHHHHHHHHHHHHHHH----cCC--CeEEEECCHHH
Confidence            9998887754       6899999999753    24455689999999999999988754    334  79999999765


Q ss_pred             ccccCC-CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         175 RYSYIT-KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       175 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      +..... ...+..       .....+...|+.+|.+.+.+++.++++.   |++++.+.||.+-
T Consensus       130 yg~~~~~~~~~~E-------~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~  183 (347)
T 4id9_A          130 YPENRPEFLPVTE-------DHPLCPNSPYGLTKLLGEELVRFHQRSG---AMETVILRFSHTQ  183 (347)
T ss_dssp             TTTTSCSSSSBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHS---SSEEEEEEECEEE
T ss_pred             hCCCCCCCCCcCC-------CCCCCCCChHHHHHHHHHHHHHHHHHhc---CCceEEEccceEe
Confidence            543100 011111       1222356789999999999999998874   7999999999775

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.71  E-value=2.2e-17  Score=147.27  Aligned_cols=175  Identities=13%  Similarity=0.013  Sum_probs=121.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhh--cCcEEEE--cCHHHH---HHHH---HHHHhhCCCCceEEEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQ--SSKLFYQ--NCWDKA---NDAI---SKILTEKPSAQCIAME   90 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~--~g~~v~~--r~~~~~---~~~~---~~l~~~~~~~~~~~~~   90 (292)
                      .++++++++ ||||+      ++||.++   +.+|.+  .|+.|++  |+....   ....   ...... .+.++.+++
T Consensus         6 ~~~~~~~vl-VTGat------G~IG~~l---~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   74 (362)
T 3sxp_A            6 DELENQTIL-ITGGA------GFVGSNL---AFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL-IGFKGEVIA   74 (362)
T ss_dssp             CCCTTCEEE-EETTT------SHHHHHH---HHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG-TTCCSEEEE
T ss_pred             hhcCCCEEE-EECCC------CHHHHHH---HHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc-cccCceEEE
Confidence            467899999 99999      9999999   666667  7877764  543210   0000   011111 144678999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          91 LDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        91 ~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      +|++|.++++++      ...++|+||||||...    .+.++++..+++|+.++..+++++..    . +  .+||++|
T Consensus        75 ~Dl~d~~~~~~~------~~~~~D~vih~A~~~~----~~~~~~~~~~~~Nv~gt~~ll~aa~~----~-~--~~~V~~S  137 (362)
T 3sxp_A           75 ADINNPLDLRRL------EKLHFDYLFHQAAVSD----TTMLNQELVMKTNYQAFLNLLEIARS----K-K--AKVIYAS  137 (362)
T ss_dssp             CCTTCHHHHHHH------TTSCCSEEEECCCCCG----GGCCCHHHHHHHHTHHHHHHHHHHHH----T-T--CEEEEEE
T ss_pred             CCCCCHHHHHHh------hccCCCEEEECCccCC----ccccCHHHHHHHHHHHHHHHHHHHHH----c-C--CcEEEeC
Confidence            999999988876      3357999999999643    25678899999999999999998742    2 3  6799999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      |...+.... . ..+.       .....+...|+.+|.+.+.+++.++.+     +.+..+.|+.+-
T Consensus       138 S~~vyg~~~-~-~~~E-------~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~lR~~~v~  190 (362)
T 3sxp_A          138 SAGVYGNTK-A-PNVV-------GKNESPENVYGFSKLCMDEFVLSHSND-----NVQVGLRYFNVY  190 (362)
T ss_dssp             EGGGGCSCC-S-SBCT-------TSCCCCSSHHHHHHHHHHHHHHHTTTT-----SCEEEEEECSEE
T ss_pred             cHHHhCCCC-C-CCCC-------CCCCCCCChhHHHHHHHHHHHHHHhcc-----CCEEEEEeCcee
Confidence            965543321 1 1111       112235678999999999999998876     445566666555

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.71  E-value=5.5e-17  Score=136.89  Aligned_cols=165  Identities=10%  Similarity=-0.081  Sum_probs=116.8

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc--CcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS--SKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~--g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++++ ||||+      ++||.++   +.+|.+.  |+.|+  .|+.++.++.         ..++.++++|++|.++
T Consensus         2 ~~~~~il-VtGas------G~iG~~l---~~~l~~~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~D~~d~~~   62 (253)
T 1xq6_A            2 ANLPTVL-VTGAS------GRTGQIV---YKKLKEGSDKFVAKGLVRSAQGKEKI---------GGEADVFIGDITDADS   62 (253)
T ss_dssp             CSCCEEE-EESTT------SHHHHHH---HHHHHHTTTTCEEEEEESCHHHHHHT---------TCCTTEEECCTTSHHH
T ss_pred             CCCCEEE-EEcCC------cHHHHHH---HHHHHhcCCCcEEEEEEcCCCchhhc---------CCCeeEEEecCCCHHH
Confidence            3578888 99999      9999999   5555566  66665  4877654322         2357789999999998


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCC-----------CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEE
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLG-----------FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVV  167 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~-----------~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV  167 (292)
                      +.++++       .+|+||||||.....           .+.+.+.++..+++|+.++..+++++...    +.  ++||
T Consensus        63 ~~~~~~-------~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~--~~iv  129 (253)
T 1xq6_A           63 INPAFQ-------GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA----GV--KHIV  129 (253)
T ss_dssp             HHHHHT-------TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH----TC--SEEE
T ss_pred             HHHHHc-------CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc----CC--CEEE
Confidence            888764       489999999975311           12233445578899999999988877543    34  7999


Q ss_pred             EEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         168 VVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       168 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ++||..+..+..           +  ...| ....|+.+|.+.+.+++.       .|++++.++||.+. +..
T Consensus       130 ~~SS~~~~~~~~-----------~--~~~~-~~~~y~~sK~~~e~~~~~-------~~i~~~~vrpg~v~~~~~  182 (253)
T 1xq6_A          130 VVGSMGGTNPDH-----------P--LNKL-GNGNILVWKRKAEQYLAD-------SGTPYTIIRAGGLLDKEG  182 (253)
T ss_dssp             EEEETTTTCTTC-----------G--GGGG-GGCCHHHHHHHHHHHHHT-------SSSCEEEEEECEEECSCS
T ss_pred             EEcCccCCCCCC-----------c--cccc-cchhHHHHHHHHHHHHHh-------CCCceEEEecceeecCCc
Confidence            999986543210           0  0001 123588899999887753       58999999999998 543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.71  E-value=3.6e-17  Score=145.03  Aligned_cols=179  Identities=12%  Similarity=0.025  Sum_probs=129.8

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCC---CceEEEEccCCChH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPS---AQCIAMELDLCRLK   97 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~---~~~~~~~~Dls~~~   97 (292)
                      +++++++ ||||+      +.||..+   +.+|.+.|+.|++  |+........+++....+.   .++.++++|++|.+
T Consensus        23 ~~~~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~   92 (351)
T 3ruf_A           23 FSPKTWL-ITGVA------GFIGSNL---LEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLT   92 (351)
T ss_dssp             HSCCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHH
T ss_pred             CCCCeEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHH
Confidence            5678898 99999      9999999   6667777877764  6533333334444432211   47899999999998


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      ++.++++       ++|+|||+||....  ..+.++.+..+++|+.++..+++++...    +.  .+||++||...+..
T Consensus        93 ~~~~~~~-------~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~ll~a~~~~----~~--~~~v~~SS~~vyg~  157 (351)
T 3ruf_A           93 TCEQVMK-------GVDHVLHQAALGSV--PRSIVDPITTNATNITGFLNILHAAKNA----QV--QSFTYAASSSTYGD  157 (351)
T ss_dssp             HHHHHTT-------TCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHT----TC--SEEEEEEEGGGGTT
T ss_pred             HHHHHhc-------CCCEEEECCccCCc--chhhhCHHHHHHHHHHHHHHHHHHHHHc----CC--CEEEEEecHHhcCC
Confidence            8877754       69999999997532  1234556788999999999999887542    33  79999999866543


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ... ..++.       .....+...|+.+|.+.+.+++.++++.   |++++.+.||.+-
T Consensus       158 ~~~-~~~~E-------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~  206 (351)
T 3ruf_A          158 HPA-LPKVE-------ENIGNPLSPYAVTKYVNEIYAQVYARTY---GFKTIGLRYFNVF  206 (351)
T ss_dssp             CCC-SSBCT-------TCCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECSEE
T ss_pred             CCC-CCCcc-------CCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeeCcee
Confidence            211 11111       1122356789999999999999999886   6899999999888

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.70  E-value=1.4e-16  Score=140.46  Aligned_cols=189  Identities=11%  Similarity=-0.054  Sum_probs=123.0

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCC-CCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKP-SAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v   99 (292)
                      +++++++ ||||+      ++||..+   +.+|.++|+.|+  .|+.+..++. .++.+... ..++.++++|++|.+++
T Consensus         3 ~~~~~vl-VTGat------GfIG~~l---~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~   71 (337)
T 2c29_D            3 SQSETVC-VTGAS------GFIGSWL---VMRLLERGYTVRATVRDPTNVKKV-KHLLDLPKAETHLTLWKADLADEGSF   71 (337)
T ss_dssp             ---CEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCTTCHHHH-HHHHTSTTHHHHEEEEECCTTSTTTT
T ss_pred             CCCCEEE-EECCc------hHHHHHH---HHHHHHCCCEEEEEECCcchhHHH-HHHHhcccCCCeEEEEEcCCCCHHHH
Confidence            3678888 99999      9999999   666777888876  4765433222 11211100 13688899999999988


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      .++++       .+|+|||+|+... .  ...+..+..+++|+.++.++++++.+..   ..  +|||++||.++..+..
T Consensus        72 ~~~~~-------~~d~Vih~A~~~~-~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~---~~--~riV~~SS~~~~~~~~  136 (337)
T 2c29_D           72 DEAIK-------GCTGVFHVATPMD-F--ESKDPENEVIKPTIEGMLGIMKSCAAAK---TV--RRLVFTSSAGTVNIQE  136 (337)
T ss_dssp             HHHHT-------TCSEEEECCCCCC-S--SCSSHHHHTHHHHHHHHHHHHHHHHHHS---CC--CEEEEECCGGGTSCSS
T ss_pred             HHHHc-------CCCEEEEeccccC-C--CCCChHHHHHHHHHHHHHHHHHHHHhCC---Cc--cEEEEeeeHhhcccCC
Confidence            77653       4799999998641 1  1223345689999999999999887642   23  7999999987554321


Q ss_pred             CCCC-CCccccCcCCC--CCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         180 TKDT-ISKSVLSVENY--SDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       180 ~~~~-~~~~~~~~~~~--~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .... .+.+.+.+...  ....+...|+.||.+.+.+++.++++.   |++++.+.||.|. +..
T Consensus       137 ~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~~lrp~~v~Gp~~  198 (337)
T 2c29_D          137 HQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKEN---NIDFITIIPTLVVGPFI  198 (337)
T ss_dssp             SCCSEECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHH---TCCEEEEEECEEESCCS
T ss_pred             CCCcccCcccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHHc---CCcEEEEeCCceECCCC
Confidence            1000 01111000000  000023469999999999998887654   6999999999998 643

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.69  E-value=1.6e-16  Score=144.86  Aligned_cols=181  Identities=12%  Similarity=-0.030  Sum_probs=122.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH---HHHHHHHHHHhhCC-------CCceEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD---KANDAISKILTEKP-------SAQCIA   88 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~---~~~~~~~~l~~~~~-------~~~~~~   88 (292)
                      ....+++++ ||||+      ++||.++   +.+|...|..|++  |+.+   ..+...+.+...++       ..++.+
T Consensus        65 ~~~~~~~vl-VTGat------G~iG~~l---~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~  134 (427)
T 4f6c_A           65 SHRPLGNTL-LTGAT------GFLGAYL---IEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEV  134 (427)
T ss_dssp             CCCCCEEEE-EECTT------SHHHHHH---HHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEE
T ss_pred             CCCCCCEEE-EecCC------cHHHHHH---HHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEE
Confidence            345677888 99999      9999999   5556777877764  7644   34444444433211       358999


Q ss_pred             EEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEE
Q psy4251          89 MELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVV  168 (292)
Q Consensus        89 ~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~  168 (292)
                      +.+|+++.+++.        ..+++|+||||||...     ..++++..+++|+.++..+++++.+     ..  .+||+
T Consensus       135 v~~Dl~d~~~l~--------~~~~~d~Vih~A~~~~-----~~~~~~~~~~~Nv~g~~~l~~aa~~-----~~--~~~v~  194 (427)
T 4f6c_A          135 IVGDFECMDDVV--------LPENMDTIIHAGARTD-----HFGDDDEFEKVNVQGTVDVIRLAQQ-----HH--ARLIY  194 (427)
T ss_dssp             EEECC---CCCC--------CSSCCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHH-----TT--CEEEE
T ss_pred             EeCCCCCcccCC--------CcCCCCEEEECCcccC-----CCCCHHHHHHHHHHHHHHHHHHHHh-----cC--CcEEE
Confidence            999999988877        4578999999999864     2356788999999999999999876     23  79999


Q ss_pred             EcCcccccccCC----CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         169 VSSESHRYSYIT----KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       169 vsS~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      +||... .....    ...+..++...    ...+...|+.+|.+.+.+++.+++    .|++++.+.||.|- +..
T Consensus       195 ~SS~~~-G~~~~~~~~~~~~~E~~~~~----~~~~~~~Y~~sK~~~E~~~~~~~~----~g~~~~ivRpg~v~G~~~  262 (427)
T 4f6c_A          195 VSTISV-GTYFDIDTEDVTFSEADVYK----GQLLTSPYTRSKFYSELKVLEAVN----NGLDGRIVRVGNLTSPYN  262 (427)
T ss_dssp             EEEGGG-GSEECSSCSCCEECTTCSCS----SCCCCSHHHHHHHHHHHHHHHHHH----TTCCEEEEEECCEESCSS
T ss_pred             ECchHh-CCCccCCCCCcccccccccc----CCCCCCchHHHHHHHHHHHHHHHH----cCCCEEEEeCCeeecCCC
Confidence            999876 21100    00011111100    012567899999999999998764    47999999999998 543

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.68  E-value=2.4e-16  Score=137.54  Aligned_cols=166  Identities=13%  Similarity=0.075  Sum_probs=121.7

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||+      ++||.++   +.+|.+.|..++.  ++....+       ..  ...+.++.+|+++ +++.+++
T Consensus         2 ~~vl-VTGat------G~iG~~l---~~~L~~~g~~v~~~~~~~~~~~-------~~--~~~~~~~~~Dl~~-~~~~~~~   61 (313)
T 3ehe_A            2 SLIV-VTGGA------GFIGSHV---VDKLSESNEIVVIDNLSSGNEE-------FV--NEAARLVKADLAA-DDIKDYL   61 (313)
T ss_dssp             -CEE-EETTT------SHHHHHH---HHHHTTTSCEEEECCCSSCCGG-------GS--CTTEEEECCCTTT-SCCHHHH
T ss_pred             CEEE-EECCC------chHHHHH---HHHHHhCCCEEEEEcCCCCChh-------hc--CCCcEEEECcCCh-HHHHHHh
Confidence            4577 99999      9999999   6667788866654  2221111       11  3468899999999 8777765


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      +       .+|+|||+|+..  ....+.++++..+++|+.++..+++++..    .+.  ++||++||...+.... ...
T Consensus        62 ~-------~~d~vih~a~~~--~~~~~~~~~~~~~~~nv~~~~~l~~~~~~----~~~--~~iv~~SS~~vyg~~~-~~~  125 (313)
T 3ehe_A           62 K-------GAEEVWHIAANP--DVRIGAENPDEIYRNNVLATYRLLEAMRK----AGV--SRIVFTSTSTVYGEAK-VIP  125 (313)
T ss_dssp             T-------TCSEEEECCCCC--CCC-CCCCHHHHHHHHHHHHHHHHHHHHH----HTC--CEEEEECCGGGGCSCS-SSS
T ss_pred             c-------CCCEEEECCCCC--ChhhhhhCHHHHHHHHHHHHHHHHHHHHH----cCC--CeEEEeCchHHhCcCC-CCC
Confidence            4       689999999964  23456778899999999999999988643    334  7999999987654321 111


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ...       .....+...|+.+|.+.+.+++.+++++   |++++.+.||.+-
T Consensus       126 ~~E-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilRp~~v~  169 (313)
T 3ehe_A          126 TPE-------DYPTHPISLYGASKLACEALIESYCHTF---DMQAWIYRFANVI  169 (313)
T ss_dssp             BCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHT---TCEEEEEECSCEE
T ss_pred             CCC-------CCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCCEEEEeecccc
Confidence            111       1123356789999999999999999886   6999999999998

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.68  E-value=6.6e-17  Score=141.05  Aligned_cols=173  Identities=12%  Similarity=0.020  Sum_probs=122.7

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      ++||.++   +.+|.++|+.|++  |.....   .    +.. ..++.++++|++|.+++.++++
T Consensus         2 ~vl-VTGat------G~iG~~l---~~~L~~~G~~V~~~~r~~~~~---~----~~~-~~~~~~~~~Dl~~~~~~~~~~~   63 (311)
T 2p5y_A            2 RVL-VTGGA------GFIGSHI---VEDLLARGLEVAVLDNLATGK---R----ENV-PKGVPFFRVDLRDKEGVERAFR   63 (311)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHTTTCEEEEECCCSSCC---G----GGS-CTTCCEECCCTTCHHHHHHHHH
T ss_pred             EEE-EEeCC------cHHHHHH---HHHHHHCCCEEEEEECCCcCc---h----hhc-ccCeEEEECCCCCHHHHHHHHH
Confidence            466 99999      9999999   6667788888875  322110   0    011 1356788999999999988876


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc-CCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY-ITKDT  183 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~-~~~~~  183 (292)
                      +.     .+|+|||+||....  ..+.++++..+++|+.++..+++++..    ...  ++||++||.++..+. .....
T Consensus        64 ~~-----~~d~vi~~a~~~~~--~~~~~~~~~~~~~N~~g~~~l~~a~~~----~~~--~~iv~~SS~~~~~g~~~~~~~  130 (311)
T 2p5y_A           64 EF-----RPTHVSHQAAQASV--KVSVEDPVLDFEVNLLGGLNLLEACRQ----YGV--EKLVFASTGGAIYGEVPEGER  130 (311)
T ss_dssp             HH-----CCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH----TTC--SEEEEEEEHHHHHCCCCTTCC
T ss_pred             hc-----CCCEEEECccccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHH----hCC--CEEEEeCCChhhcCCCCCCCC
Confidence            53     58999999997531  123456788999999999999998753    234  799999998333221 10000


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .+.       .....+...|+.||++.+.+++.+++++   |++++.+.||.+- +..
T Consensus       131 ~~E-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lrp~~v~Gp~~  178 (311)
T 2p5y_A          131 AEE-------TWPPRPKSPYAASKAAFEHYLSVYGQSY---GLKWVSLRYGNVYGPRQ  178 (311)
T ss_dssp             BCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTC
T ss_pred             cCC-------CCCCCCCChHHHHHHHHHHHHHHHHHHc---CCCEEEEeeccccCcCC
Confidence            111       1112256789999999999999998876   6999999999988 543

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.68  E-value=2.5e-16  Score=138.89  Aligned_cols=178  Identities=12%  Similarity=0.073  Sum_probs=118.5

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      ++||.++   +.+|.++|+.|++  |......+..+++.+.. +.++.++++|++|.+++.++++
T Consensus         2 ~vl-VTGat------G~iG~~l---~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~   70 (338)
T 1udb_A            2 RVL-VTGGS------GYIGSHT---CVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILH   70 (338)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHH
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhh
Confidence            466 99999      9999999   6667778887764  32111111122222211 3467889999999999888876


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      ..     ++|+||||||.....  ...++.+..+++|+.++..+++++.    +.+.  ++||++||...+... ....+
T Consensus        71 ~~-----~~D~vih~A~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~iv~~SS~~~~g~~-~~~~~  136 (338)
T 1udb_A           71 DH-----AIDTVIHFAGLKAVG--ESVQKPLEYYDNNVNGTLRLISAMR----AANV--KNFIFSSSATVYGDN-PKIPY  136 (338)
T ss_dssp             HT-----TCSEEEECCSCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHH----HHTC--CEEEEEEEGGGGCSC-CSSSB
T ss_pred             cc-----CCCEEEECCccCccc--cchhcHHHHHHHHHHHHHHHHHHHH----hcCC--CeEEEEccHHHhCCC-CCCCc
Confidence            52     599999999975311  1234457789999999999988654    3344  799999997655321 10001


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      +.+...      .++...|+.||++.+.+++.++++..  ++++..+.|+.+-
T Consensus       137 ~e~~~~------~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~ilR~~~v~  181 (338)
T 1udb_A          137 VESFPT------GTPQSPYGKSKLMVEQILTDLQKAQP--DWSIALLRYFNPV  181 (338)
T ss_dssp             CTTSCC------CCCSSHHHHHHHHHHHHHHHHHHHST--TCEEEEEEECEEE
T ss_pred             CcccCC------CCCCChHHHHHHHHHHHHHHHHHhcC--CCceEEEeeceec
Confidence            111110      01356899999999999999998852  6888888876553

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.67  E-value=1.3e-16  Score=132.27  Aligned_cols=153  Identities=13%  Similarity=0.065  Sum_probs=114.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCC-hHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCR-LKSVKKFA  103 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~~  103 (292)
                      +++ ||||+      ++||+++   +.+|.+.|+.|++  |+.++.++          ..++.++++|++| .+++.+++
T Consensus         2 ~il-ItGat------G~iG~~l---~~~L~~~g~~V~~~~R~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~   61 (219)
T 3dqp_A            2 KIF-IVGST------GRVGKSL---LKSLSTTDYQIYAGARKVEQVPQ----------YNNVKAVHFDVDWTPEEMAKQL   61 (219)
T ss_dssp             EEE-EESTT------SHHHHHH---HHHHTTSSCEEEEEESSGGGSCC----------CTTEEEEECCTTSCHHHHHTTT
T ss_pred             eEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCccchhh----------cCCceEEEecccCCHHHHHHHH
Confidence            466 99999      9999999   6777788888764  77544321          1478999999999 88777664


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                             ..+|+||||||...          ...+++|+.++..+++++.    +.+.  ++||++||..+..+..    
T Consensus        62 -------~~~d~vi~~ag~~~----------~~~~~~n~~~~~~l~~a~~----~~~~--~~iv~~SS~~~~~~~~----  114 (219)
T 3dqp_A           62 -------HGMDAIINVSGSGG----------KSLLKVDLYGAVKLMQAAE----KAEV--KRFILLSTIFSLQPEK----  114 (219)
T ss_dssp             -------TTCSEEEECCCCTT----------SSCCCCCCHHHHHHHHHHH----HTTC--CEEEEECCTTTTCGGG----
T ss_pred             -------cCCCEEEECCcCCC----------CCcEeEeHHHHHHHHHHHH----HhCC--CEEEEECcccccCCCc----
Confidence                   35999999999864          2278899999998888774    3344  7999999976554321    


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                        +.+      ....+...|+.+|.+.+.+++      ...|++++.+.||.+. +..
T Consensus       115 --~~e------~~~~~~~~Y~~sK~~~e~~~~------~~~~i~~~ilrp~~v~g~~~  158 (219)
T 3dqp_A          115 --WIG------AGFDALKDYYIAKHFADLYLT------KETNLDYTIIQPGALTEEEA  158 (219)
T ss_dssp             --CCS------HHHHHTHHHHHHHHHHHHHHH------HSCCCEEEEEEECSEECSCC
T ss_pred             --ccc------cccccccHHHHHHHHHHHHHH------hccCCcEEEEeCceEecCCC
Confidence              000      011246789999999998876      2458999999999998 543

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.67  E-value=6.2e-16  Score=142.98  Aligned_cols=186  Identities=12%  Similarity=0.043  Sum_probs=123.7

Q ss_pred             CCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc---CcEEE--EcCHHHHHHHHHHHHhhCC----------
Q psy4251          18 HPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS---SKLFY--QNCWDKANDAISKILTEKP----------   82 (292)
Q Consensus        18 ~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~---g~~v~--~r~~~~~~~~~~~l~~~~~----------   82 (292)
                      .+....++++++ ||||+      ++||.++++   +|.+.   |..|+  .|+.+.. ...+++.+...          
T Consensus        66 ~~~~~~~~~~VL-VTGat------G~IG~~l~~---~Ll~~~~~g~~V~~l~R~~~~~-~~~~~l~~~~~~~~~~~~~~~  134 (478)
T 4dqv_A           66 LPGPSPELRTVL-LTGAT------GFLGRYLVL---ELLRRLDVDGRLICLVRAESDE-DARRRLEKTFDSGDPELLRHF  134 (478)
T ss_dssp             SCCCCSCCCEEE-EECTT------SHHHHHHHH---HHHHHSCTTCEEEEEECSSSHH-HHHHHHHGGGCSSCHHHHHHH
T ss_pred             CCCCCCCCCEEE-EECCC------cHHHHHHHH---HHHhcCCCCCEEEEEECCCCcH-HHHHHHHHHHHhcchhhhhhh
Confidence            345667899999 99999      999999955   45555   66665  4654332 22333333322          


Q ss_pred             ----CCceEEEEccCCCh------HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHH
Q psy4251          83 ----SAQCIAMELDLCRL------KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQL  152 (292)
Q Consensus        83 ----~~~~~~~~~Dls~~------~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l  152 (292)
                          ..++.++.+|++++      ++++++++       ++|+||||||....      +.++..+++|+.++..+++++
T Consensus       135 ~~~~~~~v~~v~~Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~------~~~~~~~~~Nv~gt~~ll~aa  201 (478)
T 4dqv_A          135 KELAADRLEVVAGDKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA------FPYHELFGPNVAGTAELIRIA  201 (478)
T ss_dssp             HHHHTTTEEEEECCTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB------SSCCEEHHHHHHHHHHHHHHH
T ss_pred             hhhccCceEEEEeECCCcccCCCHHHHHHHHc-------CCCEEEECccccCC------cCHHHHHHHHHHHHHHHHHHH
Confidence                25899999999954      45555543       48999999998642      456788999999999998876


Q ss_pred             HHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCc----CCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEE
Q psy4251         153 ENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSV----ENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIAL  228 (292)
Q Consensus       153 l~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v  228 (292)
                      ..    ...  .+||++||....... ....+..++...    ...........|+.||.+.+.+++.++++.   |+++
T Consensus       202 ~~----~~~--~~~V~iSS~~v~~~~-~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~  271 (478)
T 4dqv_A          202 LT----TKL--KPFTYVSTADVGAAI-EPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLC---ALPV  271 (478)
T ss_dssp             TS----SSC--CCEEEEEEGGGGTTS-CTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHH---CCCE
T ss_pred             Hh----CCC--CeEEEEeehhhcCcc-CCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHh---CCCe
Confidence            43    333  699999997654321 111111111000    000000012459999999999999998865   6999


Q ss_pred             EEecCCccc
Q psy4251         229 SSRHCCWKI  237 (292)
Q Consensus       229 ~~v~PG~v~  237 (292)
                      +.+.||.|-
T Consensus       272 ~ivRpg~v~  280 (478)
T 4dqv_A          272 AVFRCGMIL  280 (478)
T ss_dssp             EEEEECEEE
T ss_pred             EEEECceee
Confidence            999999997

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.67  E-value=3.3e-16  Score=140.49  Aligned_cols=167  Identities=11%  Similarity=-0.039  Sum_probs=117.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHH-----HHHHHHHHHhhCCCC-ceEEEEccCCChH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDK-----ANDAISKILTEKPSA-QCIAMELDLCRLK   97 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~-----~~~~~~~l~~~~~~~-~~~~~~~Dls~~~   97 (292)
                      |+++ ||||+      ++||..+   +..|.+.|+.|++  |+.++     ++...+++...  +. ++.++.+|++|.+
T Consensus        29 k~vl-VtGat------G~IG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~   96 (381)
T 1n7h_A           29 KIAL-ITGIT------GQDGSYL---TEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNV--NKALMKLHYADLTDAS   96 (381)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCCSSCCCTTTTTTC----------CCEEEEECCTTCHH
T ss_pred             CeEE-EEcCC------chHHHHH---HHHHHHCCCEEEEEecCCccccchhhhhhhhccccc--cccceEEEECCCCCHH
Confidence            5677 99999      9999999   5556677777764  65332     22221111111  22 6889999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHRY  176 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~~  176 (292)
                      ++.++++.+     ++|+|||+||....  ..+.++++..+++|+.++..+++++.+...++ ..  ++||++||...+.
T Consensus        97 ~~~~~~~~~-----~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~--~~~v~~SS~~vyg  167 (381)
T 1n7h_A           97 SLRRWIDVI-----KPDEVYNLAAQSHV--AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRT--VKYYQAGSSEMFG  167 (381)
T ss_dssp             HHHHHHHHH-----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCC--CEEEEEEEGGGGT
T ss_pred             HHHHHHHhc-----CCCEEEECCcccCc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCc--cEEEEeCcHHHhC
Confidence            999888776     68999999997532  12345678899999999999999999876542 23  6999999987654


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY  222 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~  222 (292)
                      ....  .++.       .....+...|+.+|++.+.+++.++.++.
T Consensus       168 ~~~~--~~~E-------~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~  204 (381)
T 1n7h_A          168 STPP--PQSE-------TTPFHPRSPYAASKCAAHWYTVNYREAYG  204 (381)
T ss_dssp             TSCS--SBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCC--CCCC-------CCCCCCCCchHHHHHHHHHHHHHHHHHhC
Confidence            3211  1111       11223567899999999999999998864

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.67  E-value=7.9e-17  Score=142.06  Aligned_cols=176  Identities=14%  Similarity=0.069  Sum_probs=122.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhc---C---cEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS---S---KLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~---g---~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +++ ||||+      ++||..+   +.+|.++   |   +.|++  |+.....  .+.+.......++.++++|++|.++
T Consensus         2 ~vl-VTGat------G~iG~~l---~~~L~~~~~~g~~~~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~Dl~d~~~   69 (337)
T 1r6d_A            2 RLL-VTGGA------GFIGSHF---VRQLLAGAYPDVPADEVIVLDSLTYAGN--RANLAPVDADPRLRFVHGDIRDAGL   69 (337)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHHTSCTTSCCSEEEEEECCCTTCC--GGGGGGGTTCTTEEEEECCTTCHHH
T ss_pred             eEE-EECCc------cHHHHHH---HHHHHhhhcCCCCceEEEEEECCCccCc--hhhhhhcccCCCeEEEEcCCCCHHH
Confidence            466 99999      9999999   5555564   6   66654  5321000  0111111113578899999999988


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.+++       .++|+|||+||....  +.+.++++..+++|+.++..+++++.+.    ..  ++||++||...+...
T Consensus        70 ~~~~~-------~~~d~Vih~A~~~~~--~~~~~~~~~~~~~Nv~~~~~l~~a~~~~----~~--~~~v~~SS~~vyg~~  134 (337)
T 1r6d_A           70 LAREL-------RGVDAIVHFAAESHV--DRSIAGASVFTETNVQGTQTLLQCAVDA----GV--GRVVHVSTNQVYGSI  134 (337)
T ss_dssp             HHHHT-------TTCCEEEECCSCCCH--HHHHHCCHHHHHHHTHHHHHHHHHHHHT----TC--CEEEEEEEGGGGCCC
T ss_pred             HHHHh-------cCCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHHHHHHHHHHc----CC--CEEEEecchHHhCCC
Confidence            77765       479999999997531  1234567889999999999999998764    23  799999998655322


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      . ...++.       .....+...|+.+|.+.+.+++.+++++   |++++.+.||.+. +..
T Consensus       135 ~-~~~~~E-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilrp~~v~G~~~  186 (337)
T 1r6d_A          135 D-SGSWTE-------SSPLEPNSPYAASKAGSDLVARAYHRTY---GLDVRITRCCNNYGPYQ  186 (337)
T ss_dssp             S-SSCBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTC
T ss_pred             C-CCCCCC-------CCCCCCCCchHHHHHHHHHHHHHHHHHH---CCCEEEEEeeeeECCCC
Confidence            1 000111       1122356789999999999999998876   6899999999988 543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.67  E-value=3.9e-16  Score=137.70  Aligned_cols=169  Identities=7%  Similarity=-0.068  Sum_probs=116.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .+++ ||||+      ++||..+   +.+|.++|+.|++  |+.++.+.    +.    ..++.++++|++|.+++.+++
T Consensus        14 M~il-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~----l~----~~~~~~~~~Dl~d~~~~~~~~   75 (342)
T 2x4g_A           14 VKYA-VLGAT------GLLGHHA---ARAIRAAGHDLVLIHRPSSQIQR----LA----YLEPECRVAEMLDHAGLERAL   75 (342)
T ss_dssp             CEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEECTTSCGGG----GG----GGCCEEEECCTTCHHHHHHHT
T ss_pred             CEEE-EECCC------cHHHHHH---HHHHHHCCCEEEEEecChHhhhh----hc----cCCeEEEEecCCCHHHHHHHH
Confidence            3677 99999      9999999   5556677877764  66543321    21    126788999999998877765


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      +       .+|+|||+||...    .+.++++..+++|+.++..+++++.+.    +.  ++||++||...+........
T Consensus        76 ~-------~~d~vih~a~~~~----~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~--~~~v~~SS~~~~~~~~~~~~  138 (342)
T 2x4g_A           76 R-------GLDGVIFSAGYYP----SRPRRWQEEVASALGQTNPFYAACLQA----RV--PRILYVGSAYAMPRHPQGLP  138 (342)
T ss_dssp             T-------TCSEEEEC----------------CHHHHHHHHHHHHHHHHHHH----TC--SCEEEECCGGGSCCCTTSSC
T ss_pred             c-------CCCEEEECCccCc----CCCCCHHHHHHHHHHHHHHHHHHHHHc----CC--CeEEEECCHHhhCcCCCCCC
Confidence            3       5899999999753    234567889999999999999998764    33  79999999876643321001


Q ss_pred             CCccccCcCCCCCChh----hhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         184 ISKSVLSVENYSDFWA----MTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~----~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ++.       .....+    ...|+.+|.+.+.+++.+++   . |++++.+.||.+. +..
T Consensus       139 ~~E-------~~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~---~-g~~~~ilrp~~v~g~~~  189 (342)
T 2x4g_A          139 GHE-------GLFYDSLPSGKSSYVLCKWALDEQAREQAR---N-GLPVVIGIPGMVLGELD  189 (342)
T ss_dssp             BCT-------TCCCSSCCTTSCHHHHHHHHHHHHHHHHHH---T-TCCEEEEEECEEECSCC
T ss_pred             CCC-------CCCCCccccccChHHHHHHHHHHHHHHHhh---c-CCcEEEEeCCceECCCC
Confidence            111       112223    67899999999999999886   3 7999999999998 544

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.67  E-value=1.2e-16  Score=140.77  Aligned_cols=170  Identities=9%  Similarity=-0.050  Sum_probs=112.9

Q ss_pred             CCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          18 HPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        18 ~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      ++...+++++++ ||||+      ++||.++   +.+|.+.|+.|++  |+.....+   .+.+   -.++.++++|++|
T Consensus        14 ~~~~~~~~~~vl-VTGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~---~l~~---~~~~~~~~~Dl~d   77 (333)
T 2q1w_A           14 LVPRGSHMKKVF-ITGIC------GQIGSHI---AELLLERGDKVVGIDNFATGRRE---HLKD---HPNLTFVEGSIAD   77 (333)
T ss_dssp             -------CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCGG---GSCC---CTTEEEEECCTTC
T ss_pred             eeeecCCCCEEE-EeCCc------cHHHHHH---HHHHHHCCCEEEEEECCCccchh---hHhh---cCCceEEEEeCCC
Confidence            345667889998 99999      9999999   5556677877764  55322111   1110   1368889999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      .++++++++..     ++|+||||||.....   +.++++  +++|+.++..+++++.+    .+.  ++||++||...+
T Consensus        78 ~~~~~~~~~~~-----~~D~vih~A~~~~~~---~~~~~~--~~~N~~~~~~l~~a~~~----~~~--~~iV~~SS~~~~  141 (333)
T 2q1w_A           78 HALVNQLIGDL-----QPDAVVHTAASYKDP---DDWYND--TLTNCVGGSNVVQAAKK----NNV--GRFVYFQTALCY  141 (333)
T ss_dssp             HHHHHHHHHHH-----CCSEEEECCCCCSCT---TCHHHH--HHHHTHHHHHHHHHHHH----TTC--SEEEEEEEGGGG
T ss_pred             HHHHHHHHhcc-----CCcEEEECceecCCC---ccCChH--HHHHHHHHHHHHHHHHH----hCC--CEEEEECcHHHh
Confidence            99998887762     699999999986432   334444  99999999999999876    234  799999997665


Q ss_pred             cc---cCCCCCCCccccCcCCCCCChhh-hHHHHhHHHHHHHHHH-HHhHhcCCCeEEEEecCCccc
Q psy4251         176 YS---YITKDTISKSVLSVENYSDFWAM-TAYNDTKLCNVLFGEK-LATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       176 ~~---~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~-la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..   ... ..++.+.         .+. ..|+.+|++.+.+++. ++        .+..+.||.+-
T Consensus       142 g~~~~~~~-~~~~E~~---------~p~~~~Y~~sK~~~E~~~~~s~~--------~~~ilR~~~v~  190 (333)
T 2q1w_A          142 GVKPIQQP-VRLDHPR---------NPANSSYAISKSANEDYLEYSGL--------DFVTFRLANVV  190 (333)
T ss_dssp             CSCCCSSS-BCTTSCC---------CCTTCHHHHHHHHHHHHHHHHTC--------CEEEEEESEEE
T ss_pred             CCCcccCC-CCcCCCC---------CCCCCchHHHHHHHHHHHHhhhC--------CeEEEeeceEE
Confidence            31   100 0011111         244 7899999999999987 65        34455665544

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.67  E-value=1e-16  Score=139.72  Aligned_cols=169  Identities=12%  Similarity=-0.008  Sum_probs=123.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||+      ++||..+   +.+|.++|+.|++  |+.+...+.      .  ...+.++.+|++|.+ +.+++
T Consensus         1 m~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~------~--~~~~~~~~~Dl~d~~-~~~~~   61 (312)
T 3ko8_A            1 MRIV-VTGGA------GFIGSHL---VDKLVELGYEVVVVDNLSSGRREF------V--NPSAELHVRDLKDYS-WGAGI   61 (312)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEECCCSSCCGGG------S--CTTSEEECCCTTSTT-TTTTC
T ss_pred             CEEE-EECCC------ChHHHHH---HHHHHhCCCEEEEEeCCCCCchhh------c--CCCceEEECccccHH-HHhhc
Confidence            3567 99999      9999999   6667778888775  543321111      0  347889999999987 54432


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                             .. |+|||+||..  ....+.++++..+++|+.++..+++++...    +.  ++||++||...+.... ...
T Consensus        62 -------~~-d~vih~A~~~--~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~--~~iv~~SS~~vyg~~~-~~~  124 (312)
T 3ko8_A           62 -------KG-DVVFHFAANP--EVRLSTTEPIVHFNENVVATFNVLEWARQT----GV--RTVVFASSSTVYGDAD-VIP  124 (312)
T ss_dssp             -------CC-SEEEECCSSC--SSSGGGSCHHHHHHHHHHHHHHHHHHHHHH----TC--CEEEEEEEGGGGCSCS-SSS
T ss_pred             -------CC-CEEEECCCCC--CchhhhhCHHHHHHHHHHHHHHHHHHHHHc----CC--CEEEEeCcHHHhCCCC-CCC
Confidence                   23 9999999964  234466778999999999999999987532    34  7999999987654321 111


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ++.       .....+...|+.+|.+.+.+++.+++++   |++++.+.||.+. +..
T Consensus       125 ~~e-------~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~lrp~~v~g~~~  172 (312)
T 3ko8_A          125 TPE-------EEPYKPISVYGAAKAAGEVMCATYARLF---GVRCLAVRYANVVGPRL  172 (312)
T ss_dssp             BCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECTTC
T ss_pred             CCC-------CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCCEEEEeeccccCcCC
Confidence            111       1223367789999999999999999887   6999999999998 654

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.67  E-value=1.1e-16  Score=141.70  Aligned_cols=180  Identities=11%  Similarity=0.035  Sum_probs=123.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc--CcEEEE--cCHHH-HHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS--SKLFYQ--NCWDK-ANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~--g~~v~~--r~~~~-~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++++ ||||+      ++||..+   +.+|.+.  |+.|++  |+... ..+.   +.+.. ..++.++++|++|.+++.
T Consensus         5 ~~vl-VTGat------G~iG~~l---~~~L~~~~~g~~V~~~~r~~~~~~~~~---~~~~~-~~~~~~~~~Dl~d~~~~~   70 (348)
T 1oc2_A            5 KNII-VTGGA------GFIGSNF---VHYVYNNHPDVHVTVLDKLTYAGNKAN---LEAIL-GDRVELVVGDIADAELVD   70 (348)
T ss_dssp             SEEE-EETTT------SHHHHHH---HHHHHHHCTTCEEEEEECCCTTCCGGG---TGGGC-SSSEEEEECCTTCHHHHH
T ss_pred             cEEE-EeCCc------cHHHHHH---HHHHHHhCCCCEEEEEeCCCCCCChhH---Hhhhc-cCCeEEEECCCCCHHHHH
Confidence            5677 99999      9999999   5555565  666664  54211 0111   11111 347889999999998887


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++.       +|+|||+||....  +.+.++++..+++|+.++..+++++.+.     +  .+||++||...+.....
T Consensus        71 ~~~~~-------~d~vih~A~~~~~--~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-----~--~~~v~~SS~~vyg~~~~  134 (348)
T 1oc2_A           71 KLAAK-------ADAIVHYAAESHN--DNSLNDPSPFIHTNFIGTYTLLEAARKY-----D--IRFHHVSTDEVYGDLPL  134 (348)
T ss_dssp             HHHTT-------CSEEEECCSCCCH--HHHHHCCHHHHHHHTHHHHHHHHHHHHH-----T--CEEEEEEEGGGGCCBCC
T ss_pred             HHhhc-------CCEEEECCcccCc--cchhhCHHHHHHHHHHHHHHHHHHHHHh-----C--CeEEEecccceeCCCcc
Confidence            77543       5999999997531  2234567889999999999999998865     2  79999999865432210


Q ss_pred             C------CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         181 K------DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       181 ~------~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .      .......+  ++.....+...|+.+|.+.+.+++.+++++   |++++.+.||.+. +..
T Consensus       135 ~~~~~~~~~~~~~~~--~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~ilrp~~v~G~~~  196 (348)
T 1oc2_A          135 REDLPGHGEGPGEKF--TAETNYNPSSPYSSTKAASDLIVKAWVRSF---GVKATISNCSNNYGPYQ  196 (348)
T ss_dssp             GGGSTTTTCSTTSSB--CTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEESTTC
T ss_pred             cccccccccccCCCc--CCCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEeeceeeCCCC
Confidence            0      00000000  011223356789999999999999999887   6999999999998 544

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.67  E-value=3.2e-16  Score=140.28  Aligned_cols=180  Identities=10%  Similarity=-0.043  Sum_probs=122.5

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHH-----HHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDK-----ANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~-----~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++++ ||||+      ++||.++   +.+|.+.|+.|++  |+.+.     ++...+++... ...++.++++|++|.++
T Consensus        25 ~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~Dl~d~~~   93 (375)
T 1t2a_A           25 NVAL-ITGIT------GQDGSYL---AEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-IEGNMKLHYGDLTDSTC   93 (375)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCHHH
T ss_pred             cEEE-EECCC------chHHHHH---HHHHHHCCCEEEEEECCccccchhhHHHHhhhhccc-cCCCceEEEccCCCHHH
Confidence            4677 99999      9999999   5556677877764  65321     21111111100 13468899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.++++.+     ++|+||||||....  ..+.++++..+++|+.++..+++++.+...+ +.  ++||++||...+...
T Consensus        94 ~~~~~~~~-----~~d~vih~A~~~~~--~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~~--~~iv~~SS~~~~~~~  163 (375)
T 1t2a_A           94 LVKIINEV-----KPTEIYNLGAQSHV--KISFDLAEYTADVDGVGTLRLLDAVKTCGLI-NS--VKFYQASTSELYGKV  163 (375)
T ss_dssp             HHHHHHHH-----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCT-TT--CEEEEEEEGGGTCSC
T ss_pred             HHHHHHhc-----CCCEEEECCCcccc--cccccCHHHHHHHHHHHHHHHHHHHHHhCCC-cc--ceEEEecchhhhCCC
Confidence            99988776     58999999997531  1134567889999999999999998765431 23  699999998765432


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      . ...++.+       ....+...|+.+|++.+.+++.++.++   ++.+..+.|+.+-
T Consensus       164 ~-~~~~~E~-------~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~~~  211 (375)
T 1t2a_A          164 Q-EIPQKET-------TPFYPRSPYGAAKLYAYWIVVNFREAY---NLFAVNGILFNHE  211 (375)
T ss_dssp             S-SSSBCTT-------SCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEE
T ss_pred             C-CCCCCcc-------CCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeccccc
Confidence            1 0111111       122256789999999999999999876   4677767665544

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.66  E-value=4.5e-16  Score=137.03  Aligned_cols=178  Identities=12%  Similarity=-0.058  Sum_probs=124.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHH-HHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKAN-DAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+++++ ||||+      ++||.++   +.+|.+.|+.|++  |+.++.. ...+.+   ....++.++.+|++|.+++.
T Consensus        13 ~~~~vl-VTGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~   79 (335)
T 1rpn_A           13 MTRSAL-VTGIT------GQDGAYL---AKLLLEKGYRVHGLVARRSSDTRWRLREL---GIEGDIQYEDGDMADACSVQ   79 (335)
T ss_dssp             --CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCCSSCCCHHHHHT---TCGGGEEEEECCTTCHHHHH
T ss_pred             cCCeEE-EECCC------ChHHHHH---HHHHHHCCCeEEEEeCCCccccccchhhc---cccCceEEEECCCCCHHHHH
Confidence            467888 99999      9999999   5556677877764  6533210 111111   11347889999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++..     ++|+|||+||....  ..+.++++..+++|+.++..+++++.+.   ...  ++||++||...+.... 
T Consensus        80 ~~~~~~-----~~d~Vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~--~~~v~~SS~~v~g~~~-  146 (335)
T 1rpn_A           80 RAVIKA-----QPQEVYNLAAQSFV--GASWNQPVTTGVVDGLGVTHLLEAIRQF---SPE--TRFYQASTSEMFGLIQ-  146 (335)
T ss_dssp             HHHHHH-----CCSEEEECCSCCCH--HHHTTSHHHHHHHHTHHHHHHHHHHHHH---CTT--SEEEEEEEGGGGCSCS-
T ss_pred             HHHHHc-----CCCEEEECccccch--hhhhhChHHHHHHHHHHHHHHHHHHHHh---CCC--CeEEEEeCHHHhCCCC-
Confidence            988776     68999999997531  1234567889999999999999988653   113  6999999976654321 


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ...++.       .....+...|+.+|.+.+.+++.+++++   ++.+..+.|+.+-
T Consensus       147 ~~~~~E-------~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~v~  193 (335)
T 1rpn_A          147 AERQDE-------NTPFYPRSPYGVAKLYGHWITVNYRESF---GLHASSGILFNHE  193 (335)
T ss_dssp             SSSBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEE
T ss_pred             CCCCCc-------ccCCCCCChhHHHHHHHHHHHHHHHHHc---CCcEEEEeeCccc
Confidence            111111       1122256689999999999999998876   4777778887665

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.66  E-value=4.6e-16  Score=136.67  Aligned_cols=170  Identities=10%  Similarity=-0.011  Sum_probs=122.6

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||+      ++||..+   +.+|.+.|+.|++  |+.....       +.. ..++.++++|++|.+++++++
T Consensus         2 ~~il-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~-------~~~-~~~~~~~~~D~~~~~~~~~~~   63 (330)
T 2c20_A            2 NSIL-ICGGA------GYIGSHA---VKKLVDEGLSVVVVDNLQTGHE-------DAI-TEGAKFYNGDLRDKAFLRDVF   63 (330)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCG-------GGS-CTTSEEEECCTTCHHHHHHHH
T ss_pred             CEEE-EECCC------cHHHHHH---HHHHHhCCCEEEEEeCCCcCch-------hhc-CCCcEEEECCCCCHHHHHHHH
Confidence            4677 99999      9999999   5566677877764  4432211       111 126888999999999988887


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      ++     .++|+|||+||.....  .+.++++..+++|+.++..+++++..    .+.  ++||++||...+... ....
T Consensus        64 ~~-----~~~d~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~--~~~v~~Ss~~~~~~~-~~~~  129 (330)
T 2c20_A           64 TQ-----ENIEAVMHFAADSLVG--VSMEKPLQYYNNNVYGALCLLEVMDE----FKV--DKFIFSSTAATYGEV-DVDL  129 (330)
T ss_dssp             HH-----SCEEEEEECCCCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHH----TTC--CEEEEECCGGGGCSC-SSSS
T ss_pred             hh-----cCCCEEEECCcccCcc--ccccCHHHHHHHHhHHHHHHHHHHHH----cCC--CEEEEeCCceeeCCC-CCCC
Confidence            65     3699999999975321  13456788999999999999988643    334  799999997665322 1111


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ++.+       ....+...|+.+|.+.+.+++.+++++   |++++.+.||.+-
T Consensus       130 ~~E~-------~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~  173 (330)
T 2c20_A          130 ITEE-------TMTNPTNTYGETKLAIEKMLHWYSQAS---NLRYKIFRYFNVA  173 (330)
T ss_dssp             BCTT-------SCCCCSSHHHHHHHHHHHHHHHHHHTS---SCEEEEEECSEEE
T ss_pred             CCcC-------CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEecCccc
Confidence            1111       112256789999999999999998765   7999999999887

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.66  E-value=2.1e-16  Score=138.29  Aligned_cols=183  Identities=13%  Similarity=-0.041  Sum_probs=116.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c-CHHHHHHHHHHHHhhCC-CCceEEEEccCCChHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N-CWDKANDAISKILTEKP-SAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r-~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~  100 (292)
                      ||+++ ||||+      ++||..+   +.+|.++|+.|++  | +.+..+.. ..+.+... ..++.++++|++|.++++
T Consensus         1 ~k~vl-VTGat------G~iG~~l---~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~   69 (322)
T 2p4h_X            1 KGRVC-VTGGT------GFLGSWI---IKSLLENGYSVNTTIRADPERKRDV-SFLTNLPGASEKLHFFNADLSNPDSFA   69 (322)
T ss_dssp             CCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEECCCC----CCC-HHHHTSTTHHHHEEECCCCTTCGGGGH
T ss_pred             CCEEE-EECCh------hHHHHHH---HHHHHHCCCEEEEEEeCCccchhHH-HHHHhhhccCCceEEEecCCCCHHHHH
Confidence            57788 99999      9999999   6667788888764  6 54321111 11111100 126788999999999888


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCC-cchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTE-DGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~-~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      ++++       .+|+|||+|+..    ..+. +.++..+++|+.|++++++++.+..   ..  ++||++||..+..+..
T Consensus        70 ~~~~-------~~d~vih~A~~~----~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~---~~--~~iV~~SS~~~~~~~~  133 (322)
T 2p4h_X           70 AAIE-------GCVGIFHTASPI----DFAVSEPEEIVTKRTVDGALGILKACVNSK---TV--KRFIYTSSGSAVSFNG  133 (322)
T ss_dssp             HHHT-------TCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHTTCS---SC--CEEEEEEEGGGTSCSS
T ss_pred             HHHc-------CCCEEEEcCCcc----cCCCCChHHHHHHHHHHHHHHHHHHHHhcC---Cc--cEEEEeccHHHcccCC
Confidence            7754       479999999743    1122 2245689999999999999886531   33  7999999987554321


Q ss_pred             CCCC-CCccccCcCCCCCC----hhh-hHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         180 TKDT-ISKSVLSVENYSDF----WAM-TAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       180 ~~~~-~~~~~~~~~~~~~~----~~~-~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .... ++.+.+..   ..+    .+. ..|+.||.+.+.+++.++++   .|++++.+.||.|. +..
T Consensus       134 ~~~~~~~e~~~~~---~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~g~~~  195 (322)
T 2p4h_X          134 KDKDVLDESDWSD---VDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ---NGIDVVTLILPFIVGRFV  195 (322)
T ss_dssp             SCCSEECTTCCCC---HHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH---TTCCEEEEEECEEESCCC
T ss_pred             CCCeecCCccccc---hhhhcccCcccccHHHHHHHHHHHHHHHHHh---cCCcEEEEcCCceECCCC
Confidence            1000 01111000   000    011 26999999988888777654   37999999999998 654

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.66  E-value=3.2e-16  Score=140.61  Aligned_cols=179  Identities=11%  Similarity=-0.035  Sum_probs=126.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +..+++++ ||||+      ++||..+   +.+|.+.|+.|++  |+..+...    .  .  ..++.++++|++|.+++
T Consensus        26 ~~~~~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~----~--~--~~~v~~~~~Dl~d~~~~   87 (379)
T 2c5a_A           26 PSENLKIS-ITGAG------GFIASHI---ARRLKHEGHYVIASDWKKNEHMT----E--D--MFCDEFHLVDLRVMENC   87 (379)
T ss_dssp             TTSCCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCCSSSC----G--G--GTCSEEEECCTTSHHHH
T ss_pred             cccCCeEE-EECCc------cHHHHHH---HHHHHHCCCeEEEEECCCccchh----h--c--cCCceEEECCCCCHHHH
Confidence            34577888 99999      9999999   5566677777764  65332111    0  1  23678899999999988


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      .++++       ++|+|||+||.... ...+.++++..+++|+.++..+++++..    ...  ++||++||...+....
T Consensus        88 ~~~~~-------~~d~Vih~A~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~a~~~----~~~--~~~V~~SS~~v~~~~~  153 (379)
T 2c5a_A           88 LKVTE-------GVDHVFNLAADMGG-MGFIQSNHSVIMYNNTMISFNMIEAARI----NGI--KRFFYASSACIYPEFK  153 (379)
T ss_dssp             HHHHT-------TCSEEEECCCCCCC-HHHHTTCHHHHHHHHHHHHHHHHHHHHH----TTC--SEEEEEEEGGGSCGGG
T ss_pred             HHHhC-------CCCEEEECceecCc-ccccccCHHHHHHHHHHHHHHHHHHHHH----cCC--CEEEEEeehheeCCCC
Confidence            87753       58999999997532 1112456788999999999999998753    233  7999999976543221


Q ss_pred             CC----CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         180 TK----DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       180 ~~----~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ..    ..++.++.     ....+...|+.+|.+.+.+++.++++.   |++++.+.||.+. +..
T Consensus       154 ~~~~~~~~~~E~~~-----~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~G~~~  211 (379)
T 2c5a_A          154 QLETTNVSLKESDA-----WPAEPQDAFGLEKLATEELCKHYNKDF---GIECRIGRFHNIYGPFG  211 (379)
T ss_dssp             SSSSSSCEECGGGG-----SSBCCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTS
T ss_pred             CCCccCCCcCcccC-----CCCCCCChhHHHHHHHHHHHHHHHHHH---CCCEEEEEeCceeCcCC
Confidence            00    00011110     012246689999999999999998876   6999999999998 543

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.64  E-value=2.5e-16  Score=137.17  Aligned_cols=169  Identities=10%  Similarity=0.021  Sum_probs=120.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc--CcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS--SKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~--g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +++++ ||||+      ++||..+++.   |.+.  |+.|+  .|+..+.+     +..     ++.++++|++|.+++.
T Consensus         2 ~~~vl-VtGat------G~iG~~l~~~---L~~~~~g~~V~~~~r~~~~~~-----~~~-----~~~~~~~D~~d~~~~~   61 (312)
T 2yy7_A            2 NPKIL-IIGAC------GQIGTELTQK---LRKLYGTENVIASDIRKLNTD-----VVN-----SGPFEVVNALDFNQIE   61 (312)
T ss_dssp             CCCEE-EETTT------SHHHHHHHHH---HHHHHCGGGEEEEESCCCSCH-----HHH-----SSCEEECCTTCHHHHH
T ss_pred             CceEE-EECCc------cHHHHHHHHH---HHHhCCCCEEEEEcCCCcccc-----ccC-----CCceEEecCCCHHHHH
Confidence            46777 99999      9999999554   5555  55554  46543311     111     3568899999999988


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +++++.     ++|+|||+||.....   ..++.+..+++|+.++..+++++.+    .+.  ++||++||...+.....
T Consensus        62 ~~~~~~-----~~d~vih~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~--~~~v~~SS~~~~~~~~~  127 (312)
T 2yy7_A           62 HLVEVH-----KITDIYLMAALLSAT---AEKNPAFAWDLNMNSLFHVLNLAKA----KKI--KKIFWPSSIAVFGPTTP  127 (312)
T ss_dssp             HHHHHT-----TCCEEEECCCCCHHH---HHHCHHHHHHHHHHHHHHHHHHHHT----TSC--SEEECCEEGGGCCTTSC
T ss_pred             HHHhhc-----CCCEEEECCccCCCc---hhhChHHHHHHHHHHHHHHHHHHHH----cCC--CEEEEeccHHHhCCCCC
Confidence            887653     599999999975321   2356788899999999999988754    333  69999999876543211


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ....+.+       ....+...|+.+|.+.+.+++.++++.   |++++.+.||.+-
T Consensus       128 ~~~~~e~-------~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lrp~~v~  174 (312)
T 2yy7_A          128 KENTPQY-------TIMEPSTVYGISKQAGERWCEYYHNIY---GVDVRSIRYPGLI  174 (312)
T ss_dssp             SSSBCSS-------CBCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEECEEECEEE
T ss_pred             CCCcccc-------CcCCCCchhHHHHHHHHHHHHHHHHhc---CCcEEEEeCCeEe
Confidence            0111111       112256789999999999999998776   6999999999887

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=5.5e-16  Score=128.96  Aligned_cols=160  Identities=8%  Similarity=-0.071  Sum_probs=115.7

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||+      ++||..+   +.+|.+.|+.|++  |+.++.+.       .  ...+.++++|++|.+++.+++
T Consensus         5 ~~il-ItGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~-------~--~~~~~~~~~Dl~d~~~~~~~~   65 (227)
T 3dhn_A            5 KKIV-LIGAS------GFVGSAL---LNEALNRGFEVTAVVRHPEKIKI-------E--NEHLKVKKADVSSLDEVCEVC   65 (227)
T ss_dssp             CEEE-EETCC------HHHHHHH---HHHHHTTTCEEEEECSCGGGCCC-------C--CTTEEEECCCTTCHHHHHHHH
T ss_pred             CEEE-EEcCC------chHHHHH---HHHHHHCCCEEEEEEcCcccchh-------c--cCceEEEEecCCCHHHHHHHh
Confidence            5677 99999      9999999   6667788887764  66544221       1  257899999999999988876


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      +       .+|+||||||....     .   ...+++|+.++..+++++..    .+.  .+||++||..+..+...  .
T Consensus        66 ~-------~~d~vi~~a~~~~~-----~---~~~~~~n~~~~~~l~~~~~~----~~~--~~~v~~Ss~~~~~~~~~--~  122 (227)
T 3dhn_A           66 K-------GADAVISAFNPGWN-----N---PDIYDETIKVYLTIIDGVKK----AGV--NRFLMVGGAGSLFIAPG--L  122 (227)
T ss_dssp             T-------TCSEEEECCCC--------------CCSHHHHHHHHHHHHHHH----TTC--SEEEEECCSTTSEEETT--E
T ss_pred             c-------CCCEEEEeCcCCCC-----C---hhHHHHHHHHHHHHHHHHHH----hCC--CEEEEeCChhhccCCCC--C
Confidence            4       48999999986421     1   22688899998888887643    334  79999999876544311  0


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ...+       ....+...|+.+|.+.+.+.+.++++   .|++++.+.||.+.
T Consensus       123 ~~~~-------~~~~p~~~Y~~sK~~~e~~~~~~~~~---~~~~~~ilrp~~v~  166 (227)
T 3dhn_A          123 RLMD-------SGEVPENILPGVKALGEFYLNFLMKE---KEIDWVFFSPAADM  166 (227)
T ss_dssp             EGGG-------TTCSCGGGHHHHHHHHHHHHHTGGGC---CSSEEEEEECCSEE
T ss_pred             cccc-------CCcchHHHHHHHHHHHHHHHHHHhhc---cCccEEEEeCCccc
Confidence            0011       11225678999999999988888763   47999999999987

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.63  E-value=9e-16  Score=148.27  Aligned_cols=188  Identities=15%  Similarity=0.117  Sum_probs=124.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++++++ ||||+      ++||.++   +.+|.+.|+.|++  |+.....+..+++.... ..++.++++|+++.++
T Consensus         7 ~~~~~~~il-VTGat------G~IG~~l---~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~   75 (699)
T 1z45_A            7 SESTSKIVL-VTGGA------GYIGSHT---VVELIENGYDCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKG   75 (699)
T ss_dssp             ----CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHH
T ss_pred             cccCCCEEE-EECCC------CHHHHHH---HHHHHHCcCEEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHH
Confidence            456789998 99999      9999999   5556677877764  54322222222232211 3467889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.+++++.     ++|+|||+||.....  ...+..+..+++|+.++..+++++..    .+.  ++||++||...+...
T Consensus        76 l~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~Nv~gt~~ll~a~~~----~~~--~~iV~~SS~~vyg~~  142 (699)
T 1z45_A           76 LEKVFKEY-----KIDSVIHFAGLKAVG--ESTQIPLRYYHNNILGTVVLLELMQQ----YNV--SKFVFSSSATVYGDA  142 (699)
T ss_dssp             HHHHHHHS-----CCCEEEECCSCCCHH--HHHHSHHHHHHHHHHHHHHHHHHHHH----HTC--CEEEEEEEGGGGCCG
T ss_pred             HHHHHHhC-----CCCEEEECCcccCcC--ccccCHHHHHHHHHHHHHHHHHHHHH----cCC--CEEEEECcHHHhCCC
Confidence            88887653     699999999975311  01223456899999999998876543    344  799999997654321


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .....  .... . +.....+...|+.+|++.+.+++.++++. ..|+++..+.|+.+-
T Consensus       143 ~~~~~--~~~~-~-E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~g~~~~ilR~~~vy  196 (699)
T 1z45_A          143 TRFPN--MIPI-P-EECPLGPTNPYGHTKYAIENILNDLYNSD-KKSWKFAILRYFNPI  196 (699)
T ss_dssp             GGSTT--CCSB-C-TTSCCCCCSHHHHHHHHHHHHHHHHHHHS-TTSCEEEEEEECEEE
T ss_pred             ccccc--cCCc-c-ccCCCCCCChHHHHHHHHHHHHHHHHHhc-cCCCcEEEEEecccc
Confidence            10000  0000 0 11122245789999999999999998875 347999999988765

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.63  E-value=1.2e-15  Score=136.22  Aligned_cols=179  Identities=7%  Similarity=-0.067  Sum_probs=122.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCC-Ch
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLC-RL   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-~~   96 (292)
                      ..+.+++++ ||||+      +.||..+   +.+|.+. |+.|++  |+.++.....    +   ..++.++++|++ +.
T Consensus        20 ~~m~~~~vl-VtGat------G~iG~~l---~~~L~~~~g~~V~~~~r~~~~~~~~~----~---~~~v~~~~~Dl~~d~   82 (372)
T 3slg_A           20 GSMKAKKVL-ILGVN------GFIGHHL---SKRILETTDWEVFGMDMQTDRLGDLV----K---HERMHFFEGDITINK   82 (372)
T ss_dssp             ---CCCEEE-EESCS------SHHHHHH---HHHHHHHSSCEEEEEESCCTTTGGGG----G---STTEEEEECCTTTCH
T ss_pred             cccCCCEEE-EECCC------ChHHHHH---HHHHHhCCCCEEEEEeCChhhhhhhc----c---CCCeEEEeCccCCCH
Confidence            446788988 99999      9999999   5556666 766654  6654332211    1   247999999999 89


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++.++++       .+|+|||+||...+.  ...++.+..+++|+.++..+++++...     +  .++|++||...+.
T Consensus        83 ~~~~~~~~-------~~d~Vih~A~~~~~~--~~~~~~~~~~~~nv~~~~~ll~a~~~~-----~--~~~v~~SS~~vyg  146 (372)
T 3slg_A           83 EWVEYHVK-------KCDVILPLVAIATPA--TYVKQPLRVFELDFEANLPIVRSAVKY-----G--KHLVFPSTSEVYG  146 (372)
T ss_dssp             HHHHHHHH-------HCSEEEECBCCCCHH--HHHHCHHHHHHHHTTTTHHHHHHHHHH-----T--CEEEEECCGGGGB
T ss_pred             HHHHHHhc-------cCCEEEEcCccccHH--HHhhCHHHHHHHHHHHHHHHHHHHHHh-----C--CcEEEeCcHHHhC
Confidence            88888765       489999999976421  123455678999999999988887543     2  6999999975543


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ... ...+..++..........+...|+.+|.+.+.+++.++++    |++++.+.||.+-
T Consensus       147 ~~~-~~~~~e~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~----g~~~~ilRp~~v~  202 (372)
T 3slg_A          147 MCA-DEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGME----GLNFTLFRPFNWI  202 (372)
T ss_dssp             SCC-CSSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECSEE
T ss_pred             CCC-CCCCCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHC----CCCEEEEcccccc
Confidence            321 1111111100000000025568999999999999998876    6999999999987

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.62  E-value=1.8e-15  Score=132.13  Aligned_cols=157  Identities=13%  Similarity=0.007  Sum_probs=89.0

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +++++ ||||+      ++||..+   +.+|.+.|+.|++  |+.+.            +  +  ++++|++|.+++.++
T Consensus         2 ~~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~------------~--~--~~~~Dl~d~~~~~~~   55 (315)
T 2ydy_A            2 NRRVL-VTGAT------GLLGRAV---HKEFQQNNWHAVGCGFRRAR------------P--K--FEQVNLLDSNAVHHI   55 (315)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHTTTCEEEEEC----------------------------------CHHH
T ss_pred             CCeEE-EECCC------cHHHHHH---HHHHHhCCCeEEEEccCCCC------------C--C--eEEecCCCHHHHHHH
Confidence            57788 99999      9999999   6667788888875  43322            1  1  678999999998888


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++..     ++|+||||||....  ..+.++++..+++|+.++..+++++.+.     +  ++||++||...+.+.  ..
T Consensus        56 ~~~~-----~~d~vih~A~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~~-----~--~~~v~~SS~~v~~~~--~~  119 (315)
T 2ydy_A           56 IHDF-----QPHVIVHCAAERRP--DVVENQPDAASQLNVDASGNLAKEAAAV-----G--AFLIYISSDYVFDGT--NP  119 (315)
T ss_dssp             HHHH-----CCSEEEECC---------------------CHHHHHHHHHHHHH-----T--CEEEEEEEGGGSCSS--SC
T ss_pred             HHhh-----CCCEEEECCcccCh--hhhhcCHHHHHHHHHHHHHHHHHHHHHc-----C--CeEEEEchHHHcCCC--CC
Confidence            7765     68999999997642  2245678889999999999999998752     3  799999998765431  11


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEec
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRH  232 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~  232 (292)
                      .++.++.       ..+...|+.+|.+.+.+++.++.++  ..+|++.|.
T Consensus       120 ~~~E~~~-------~~~~~~Y~~sK~~~e~~~~~~~~~~--~~lR~~~v~  160 (315)
T 2ydy_A          120 PYREEDI-------PAPLNLYGKTKLDGEKAVLENNLGA--AVLRIPILY  160 (315)
T ss_dssp             SBCTTSC-------CCCCSHHHHHHHHHHHHHHHHCTTC--EEEEECSEE
T ss_pred             CCCCCCC-------CCCcCHHHHHHHHHHHHHHHhCCCe--EEEeeeeee
Confidence            1111111       2256789999999999999876433  235555554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.62  E-value=4.7e-16  Score=139.44  Aligned_cols=180  Identities=8%  Similarity=-0.018  Sum_probs=122.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++++++ ||||+      ++||..+   +.+|.+.| +.|++  |+.....+   .+.   ...++.++++|++|.++
T Consensus        29 ~~~~~~il-VtGat------G~iG~~l---~~~L~~~g~~~V~~~~r~~~~~~~---~l~---~~~~v~~~~~Dl~d~~~   92 (377)
T 2q1s_A           29 KLANTNVM-VVGGA------GFVGSNL---VKRLLELGVNQVHVVDNLLSAEKI---NVP---DHPAVRFSETSITDDAL   92 (377)
T ss_dssp             GGTTCEEE-EETTT------SHHHHHH---HHHHHHTTCSEEEEECCCTTCCGG---GSC---CCTTEEEECSCTTCHHH
T ss_pred             HhCCCEEE-EECCc------cHHHHHH---HHHHHHcCCceEEEEECCCCCchh---hcc---CCCceEEEECCCCCHHH
Confidence            47788988 99999      9999999   55566777 77764  55332111   111   13478899999999887


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHRYS  177 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~~~  177 (292)
                      +.++++       ++|+|||+||....  ..+.++++..+++|+.++..+++++.    +. ..  .+||++||...+..
T Consensus        93 l~~~~~-------~~d~Vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~ll~a~~----~~~~~--~~~V~~SS~~vyg~  157 (377)
T 2q1s_A           93 LASLQD-------EYDYVFHLATYHGN--QSSIHDPLADHENNTLTTLKLYERLK----HFKRL--KKVVYSAAGCSIAE  157 (377)
T ss_dssp             HHHCCS-------CCSEEEECCCCSCH--HHHHHCHHHHHHHHTHHHHHHHHHHT----TCSSC--CEEEEEEEC-----
T ss_pred             HHHHhh-------CCCEEEECCCccCc--hhhhhCHHHHHHHHHHHHHHHHHHHH----HhCCC--CeEEEeCCHHHcCC
Confidence            766543       69999999997532  12335678899999999999988773    33 34  79999999765432


Q ss_pred             cCCCCCCC--ccccCcCCCCCC-hhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         178 YITKDTIS--KSVLSVENYSDF-WAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       178 ~~~~~~~~--~~~~~~~~~~~~-~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .. ...++  .+.+.    ... .+...|+.+|.+.+.+++.++++.   |++++.+.||.+- +..
T Consensus       158 ~~-~~~~~~~E~~~~----~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          158 KT-FDDAKATEETDI----VSLHNNDSPYSMSKIFGEFYSVYYHKQH---QLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             ----------CCCCC----CCSSCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTC
T ss_pred             CC-CCCcCccccccc----ccccCCCCchHHHHHHHHHHHHHHHHHh---CCCEEEEeeccEECCCC
Confidence            11 00011  11100    011 256689999999999999998876   6999999999998 543

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.61  E-value=1.3e-15  Score=133.00  Aligned_cols=163  Identities=15%  Similarity=0.155  Sum_probs=115.0

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhc--CcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQS--SKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~--g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++ ||||+      ++||..+++.   |.+.  |+.|+  .|+....             ..+.++.+|++|.+++.+++
T Consensus         2 vl-VtGat------G~iG~~l~~~---L~~~~~g~~V~~~~r~~~~~-------------~~~~~~~~D~~d~~~~~~~~   58 (317)
T 3ajr_A            2 IL-VTGSS------GQIGTELVPY---LAEKYGKKNVIASDIVQRDT-------------GGIKFITLDVSNRDEIDRAV   58 (317)
T ss_dssp             EE-EESTT------STTHHHHHHH---HHHHHCGGGEEEEESSCCCC-------------TTCCEEECCTTCHHHHHHHH
T ss_pred             EE-EEcCC------cHHHHHHHHH---HHHhcCCCEEEEecCCCccc-------------cCceEEEecCCCHHHHHHHH
Confidence            55 99999      9999999554   5455  55554  3543211             13567899999999988887


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      ++.     ++|+|||+||....   ...++.+..+++|+.++..+++++.+    .+.  ++||++||...+....+...
T Consensus        59 ~~~-----~~d~vih~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~--~~~v~~SS~~~~~~~~~~~~  124 (317)
T 3ajr_A           59 EKY-----SIDAIFHLAGILSA---KGEKDPALAYKVNMNGTYNILEAAKQ----HRV--EKVVIPSTIGVFGPETPKNK  124 (317)
T ss_dssp             HHT-----TCCEEEECCCCCHH---HHHHCHHHHHHHHHHHHHHHHHHHHH----TTC--CEEEEEEEGGGCCTTSCSSS
T ss_pred             hhc-----CCcEEEECCcccCC---ccccChHHHhhhhhHHHHHHHHHHHH----cCC--CEEEEecCHHHhCCCCCCCC
Confidence            652     69999999997532   12346788999999999999998754    233  79999999876643211000


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ...       .....+...|+.+|.+.+.+++.++++.   |++++.+.|+.+-
T Consensus       125 ~~e-------~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lR~~~~~  168 (317)
T 3ajr_A          125 VPS-------ITITRPRTMFGVTKIAAELLGQYYYEKF---GLDVRSLRYPGII  168 (317)
T ss_dssp             BCS-------SSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEE
T ss_pred             ccc-------cccCCCCchHHHHHHHHHHHHHHHHHhc---CCeEEEEecCcEe
Confidence            111       1112256789999999999999988765   6999999866554

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.61  E-value=1.4e-15  Score=135.12  Aligned_cols=175  Identities=10%  Similarity=-0.033  Sum_probs=120.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++++++++ ||||+      ++||..+   +.+|.+.| ..|+  .|+.....  .+.+    ++  +. +.+|+++.++
T Consensus        43 ~~~~~~vl-VtGat------G~iG~~l---~~~L~~~g~~~V~~~~r~~~~~~--~~~~----~~--~~-~~~d~~~~~~  103 (357)
T 2x6t_A           43 GIEGRMII-VTGGA------GFIGSNI---VKALNDKGITDILVVDNLKDGTK--FVNL----VD--LN-IADYMDKEDF  103 (357)
T ss_dssp             -----CEE-EETTT------SHHHHHH---HHHHHHTTCCCEEEEECCSSGGG--GGGT----TT--SC-CSEEEEHHHH
T ss_pred             cCCCCEEE-EECCC------cHHHHHH---HHHHHHCCCcEEEEEecCCCcch--hhcc----cC--ce-EeeecCcHHH
Confidence            46778888 99999      9999999   55566667 5554  35533210  1111    11  22 6789999888


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.  ..++++|+|||+||....    +.++++..+++|+.++..+++++.+.     +  .+||++||...+...
T Consensus       104 ~~~~~~~--~~~~~~d~Vih~A~~~~~----~~~~~~~~~~~n~~~~~~ll~a~~~~-----~--~r~V~~SS~~v~g~~  170 (357)
T 2x6t_A          104 LIQIMAG--EEFGDVEAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLER-----E--IPFLYASSAATYGGR  170 (357)
T ss_dssp             HHHHHTT--CCCSSCCEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHHH-----T--CCEEEEEEGGGGCSC
T ss_pred             HHHHHhh--cccCCCCEEEECCcccCC----ccCCHHHHHHHHHHHHHHHHHHHHHc-----C--CeEEEEcchHHhCCC
Confidence            8877653  235689999999997643    45678899999999999999998762     2  499999998665332


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      . ...++.+..       ..+...|+.+|.+.+.+++.++.+.   |++++.+.||.+- +.
T Consensus       171 ~-~~~~~E~~~-------~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~Gp~  221 (357)
T 2x6t_A          171 T-SDFIESREY-------EKPLNVFGYSKFLFDEYVRQILPEA---NSQIVGFRYFNVYGPR  221 (357)
T ss_dssp             S-SCCCSSGGG-------CCCSSHHHHHHHHHHHHHHHHGGGC---SSCEEEEEECEEESSS
T ss_pred             C-CCCcCCcCC-------CCCCChhHHHHHHHHHHHHHHHHHc---CCCEEEEecCeEECCC
Confidence            1 111111111       1246689999999999999998764   7999999999988 53

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.60  E-value=7.7e-15  Score=119.86  Aligned_cols=151  Identities=9%  Similarity=-0.091  Sum_probs=107.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +++++ ||||+      ++||+++   +.+|.+.|+.|+  .|+.++.+.       .. ..++.++++|++|.+++.++
T Consensus         3 ~~~il-VtGat------G~iG~~l---~~~l~~~g~~V~~~~r~~~~~~~-------~~-~~~~~~~~~D~~~~~~~~~~   64 (206)
T 1hdo_A            3 VKKIA-IFGAT------GQTGLTT---LAQAVQAGYEVTVLVRDSSRLPS-------EG-PRPAHVVVGDVLQAADVDKT   64 (206)
T ss_dssp             CCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCGGGSCS-------SS-CCCSEEEESCTTSHHHHHHH
T ss_pred             CCEEE-EEcCC------cHHHHHH---HHHHHHCCCeEEEEEeChhhccc-------cc-CCceEEEEecCCCHHHHHHH
Confidence            36777 99999      9999999   555666777765  477544321       10 34788999999999888776


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++       .+|+||||||.... .  +   +   .++|+.++..+++++..    .+.  ++||++||........   
T Consensus        65 ~~-------~~d~vi~~a~~~~~-~--~---~---~~~n~~~~~~~~~~~~~----~~~--~~~v~~Ss~~~~~~~~---  119 (206)
T 1hdo_A           65 VA-------GQDAVIVLLGTRND-L--S---P---TTVMSEGARNIVAAMKA----HGV--DKVVACTSAFLLWDPT---  119 (206)
T ss_dssp             HT-------TCSEEEECCCCTTC-C--S---C---CCHHHHHHHHHHHHHHH----HTC--CEEEEECCGGGTSCTT---
T ss_pred             Hc-------CCCEEEECccCCCC-C--C---c---cchHHHHHHHHHHHHHH----hCC--CeEEEEeeeeeccCcc---
Confidence            53       47999999997543 1  1   1   24788888777777653    334  7999999986543221   


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                                  ....+...|+.+|.+++.+.+.       .|++++.+.||.+.
T Consensus       120 ------------~~~~~~~~y~~~K~~~e~~~~~-------~~i~~~~lrp~~~~  155 (206)
T 1hdo_A          120 ------------KVPPRLQAVTDDHIRMHKVLRE-------SGLKYVAVMPPHIG  155 (206)
T ss_dssp             ------------CSCGGGHHHHHHHHHHHHHHHH-------TCSEEEEECCSEEE
T ss_pred             ------------cccccchhHHHHHHHHHHHHHh-------CCCCEEEEeCCccc
Confidence                        0011467899999999988742       47999999999984

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.60  E-value=8.3e-15  Score=127.71  Aligned_cols=164  Identities=12%  Similarity=-0.026  Sum_probs=118.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +++++ ||||+      +.||..+   +.+|.+.|+.|++  |+....+     +.      ++.++++|++ .+++.++
T Consensus         2 ~~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~-----~~------~~~~~~~Dl~-~~~~~~~   59 (311)
T 3m2p_A            2 SLKIA-VTGGT------GFLGQYV---VESIKNDGNTPIILTRSIGNKA-----IN------DYEYRVSDYT-LEDLINQ   59 (311)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-HHHHHHH
T ss_pred             CCEEE-EECCC------cHHHHHH---HHHHHhCCCEEEEEeCCCCccc-----CC------ceEEEEcccc-HHHHHHh
Confidence            36777 99999      9999999   6667777877764  6622211     11      6788999999 8887776


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++       ++|+|||+||.....      +.+..+++|+.++..+++++..    .+.  .|||++||...+.... ..
T Consensus        60 ~~-------~~d~Vih~a~~~~~~------~~~~~~~~n~~~~~~ll~a~~~----~~~--~r~v~~SS~~vyg~~~-~~  119 (311)
T 3m2p_A           60 LN-------DVDAVVHLAATRGSQ------GKISEFHDNEILTQNLYDACYE----NNI--SNIVYASTISAYSDET-SL  119 (311)
T ss_dssp             TT-------TCSEEEECCCCCCSS------SCGGGTHHHHHHHHHHHHHHHH----TTC--CEEEEEEEGGGCCCGG-GC
T ss_pred             hc-------CCCEEEEccccCCCC------ChHHHHHHHHHHHHHHHHHHHH----cCC--CEEEEEccHHHhCCCC-CC
Confidence            43       699999999986432      5577899999999988888753    334  7899999975543221 11


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .++.       .....+...|+.+|.+.+.+++.++++.   |++++.+.||.+- +..
T Consensus       120 ~~~E-------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~  168 (311)
T 3m2p_A          120 PWNE-------KELPLPDLMYGVSKLACEHIGNIYSRKK---GLCIKNLRFAHLYGFNE  168 (311)
T ss_dssp             SBCT-------TSCCCCSSHHHHHHHHHHHHHHHHHHHS---CCEEEEEEECEEECSCC
T ss_pred             CCCC-------CCCCCCCchhHHHHHHHHHHHHHHHHHc---CCCEEEEeeCceeCcCC
Confidence            1111       1122356789999999999999988763   7999999999988 443

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.60  E-value=5.4e-16  Score=136.72  Aligned_cols=185  Identities=12%  Similarity=-0.058  Sum_probs=117.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHH--HHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDA--ISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~--~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +|+++ ||||+      ++||..+   +.+|.++|+.|+  .|+.+..++.  ..++. .  ..++.++++|++|.+++.
T Consensus         9 ~~~vl-VTGat------GfIG~~l---~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~--~~~~~~~~~Dl~d~~~~~   75 (338)
T 2rh8_A            9 KKTAC-VVGGT------GFVASLL---VKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-E--LGDLKIFRADLTDELSFE   75 (338)
T ss_dssp             CCEEE-EECTT------SHHHHHH---HHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-G--GSCEEEEECCTTTSSSSH
T ss_pred             CCEEE-EECCc------hHHHHHH---HHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-C--CCcEEEEecCCCChHHHH
Confidence            67888 99999      9999999   666777888776  4764432111  12232 1  246888999999998877


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++++       .+|+|||+||... ..  ..+..+..+++|+.|+..+++++.+..   ..  +|||++||.++..+...
T Consensus        76 ~~~~-------~~D~Vih~A~~~~-~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~---~v--~r~V~~SS~~~~~~~~~  140 (338)
T 2rh8_A           76 APIA-------GCDFVFHVATPVH-FA--SEDPENDMIKPAIQGVVNVMKACTRAK---SV--KRVILTSSAAAVTINQL  140 (338)
T ss_dssp             HHHT-------TCSEEEEESSCCC-C-----------CHHHHHHHHHHHHHHHHCT---TC--CEEEEECCHHHHHHHHH
T ss_pred             HHHc-------CCCEEEEeCCccC-CC--CCCcHHHHHHHHHHHHHHHHHHHHHcC---Cc--CEEEEEecHHHeecCCc
Confidence            7653       4799999998642 11  112224589999999999999886532   23  79999999864322100


Q ss_pred             CC---CCCccccCcC-CCCCCh-hhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         181 KD---TISKSVLSVE-NYSDFW-AMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       181 ~~---~~~~~~~~~~-~~~~~~-~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ..   .++.+.+... ...... ....|+.||.+.+.+++.++++.   |++++.+.||.|. +..
T Consensus       141 ~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~~lrp~~v~Gp~~  203 (338)
T 2rh8_A          141 DGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEEN---NIDLITVIPTLMAGSSL  203 (338)
T ss_dssp             TCSCCCCCTTTTTCC-------CCCCCCTTSCCHHHHHHHHHHHHH---TCCEEEEEECEEESCCS
T ss_pred             CCCCcccChhhccchhhccccCCccchHHHHHHHHHHHHHHHHHHc---CCcEEEEeCCceECCCC
Confidence            00   1111111000 000000 01159999999999988887654   6999999999998 654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.59  E-value=6.8e-15  Score=123.35  Aligned_cols=154  Identities=8%  Similarity=-0.103  Sum_probs=99.6

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ...|+++ ||||+      +|||+++   +.+|++.| +.|+  .|+.+++++       .. ..++.++++|++|.+++
T Consensus        21 ~~mk~vl-VtGat------G~iG~~l---~~~L~~~G~~~V~~~~R~~~~~~~-------~~-~~~~~~~~~Dl~d~~~~   82 (236)
T 3qvo_A           21 GHMKNVL-ILGAG------GQIARHV---INQLADKQTIKQTLFARQPAKIHK-------PY-PTNSQIIMGDVLNHAAL   82 (236)
T ss_dssp             -CCEEEE-EETTT------SHHHHHH---HHHHTTCTTEEEEEEESSGGGSCS-------SC-CTTEEEEECCTTCHHHH
T ss_pred             CcccEEE-EEeCC------cHHHHHH---HHHHHhCCCceEEEEEcChhhhcc-------cc-cCCcEEEEecCCCHHHH
Confidence            3457787 99999      9999999   66777888 6665  477654322       11 34789999999999998


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++       .+|+||||||..         .           ....++.+++.+++.+.  ++||++||........
T Consensus        83 ~~~~~-------~~D~vv~~a~~~---------~-----------~~~~~~~~~~~~~~~~~--~~iV~iSS~~~~~~~~  133 (236)
T 3qvo_A           83 KQAMQ-------GQDIVYANLTGE---------D-----------LDIQANSVIAAMKACDV--KRLIFVLSLGIYDEVP  133 (236)
T ss_dssp             HHHHT-------TCSEEEEECCST---------T-----------HHHHHHHHHHHHHHTTC--CEEEEECCCCC-----
T ss_pred             HHHhc-------CCCEEEEcCCCC---------c-----------hhHHHHHHHHHHHHcCC--CEEEEEecceecCCCC
Confidence            88764       479999999852         1           11346678888887776  8999999987654321


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ... ..++   .  .....+...|..+|..           +...||+++.|+||++. +..
T Consensus       134 ~~~-~~~~---~--~~~~~~~~~~~~~~~~-----------l~~~gi~~~~vrPg~i~~~~~  178 (236)
T 3qvo_A          134 GKF-VEWN---N--AVIGEPLKPFRRAADA-----------IEASGLEYTILRPAWLTDEDI  178 (236)
T ss_dssp             -----------------CGGGHHHHHHHHH-----------HHTSCSEEEEEEECEEECCSC
T ss_pred             ccc-ccch---h--hcccchHHHHHHHHHH-----------HHHCCCCEEEEeCCcccCCCC
Confidence            000 0000   0  0011134456554432           23568999999999998 543

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.59  E-value=4.5e-15  Score=129.13  Aligned_cols=171  Identities=9%  Similarity=-0.059  Sum_probs=118.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+++++++ ||||+      +.||..+   +.+|.+.|.    +             .......+..+++|++|.+++.+
T Consensus         3 ~~~~~~vl-VtGat------G~iG~~l---~~~L~~~g~----~-------------~~~~~~~~~~~~~D~~d~~~~~~   55 (319)
T 4b8w_A            3 YFQSMRIL-VTGGS------GLVGKAI---QKVVADGAG----L-------------PGEDWVFVSSKDADLTDTAQTRA   55 (319)
T ss_dssp             CCCCCEEE-EETCS------SHHHHHH---HHHHHTTTC----C-------------TTCEEEECCTTTCCTTSHHHHHH
T ss_pred             cccCCeEE-EECCC------cHHHHHH---HHHHHhcCC----c-------------ccccccccCceecccCCHHHHHH
Confidence            46788998 99999      9999999   666767776    0             00001233445799999999888


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++..     ++|+|||+|+.... ...+.++.+..+++|+.++..+++++..    .+.  .++|++||...+... ..
T Consensus        56 ~~~~~-----~~d~Vih~A~~~~~-~~~~~~~~~~~~~~nv~gt~~ll~a~~~----~~~--~~~v~~SS~~vyg~~-~~  122 (319)
T 4b8w_A           56 LFEKV-----QPTHVIHLAAMVGG-LFRNIKYNLDFWRKNVHMNDNVLHSAFE----VGA--RKVVSCLSTCIFPDK-TT  122 (319)
T ss_dssp             HHHHS-----CCSEEEECCCCCCC-HHHHTTCHHHHHHHHHHHHHHHHHHHHH----TTC--SEEEEECCGGGSCSS-CC
T ss_pred             HHhhc-----CCCEEEECceeccc-ccccccCHHHHHHHHHHHHHHHHHHHHH----cCC--CeEEEEcchhhcCCC-CC
Confidence            87653     59999999998531 1123456678899999999998888743    234  699999998654322 11


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..++.+....  ....+....|+.+|.+.+.+++.++++.   |++++.+.||.+-
T Consensus       123 ~~~~E~~~~~--~~~~p~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~  173 (319)
T 4b8w_A          123 YPIDETMIHN--GPPHNSNFGYSYAKRMIDVQNRAYFQQY---GCTFTAVIPTNVF  173 (319)
T ss_dssp             SSBCGGGGGB--SCCCSSSHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEE
T ss_pred             CCcccccccc--CCCCCCcchHHHHHHHHHHHHHHHHHhh---CCCEEEEeecccc
Confidence            1111111000  0011123469999999999999998876   6999999999988

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.58  E-value=9.7e-15  Score=128.83  Aligned_cols=176  Identities=6%  Similarity=-0.115  Sum_probs=118.4

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh-HHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL-KSVKKF  102 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v~~~  102 (292)
                      +++ ||||+      ++||..+   +.+|.+. |+.|+  .|+.++.+.    +   ....++.++++|++|. +.++++
T Consensus         2 ~vl-VtGat------G~iG~~l---~~~L~~~~g~~V~~~~r~~~~~~~----~---~~~~~~~~~~~D~~~~~~~~~~~   64 (345)
T 2bll_A            2 RVL-ILGVN------GFIGNHL---TERLLREDHYEVYGLDIGSDAISR----F---LNHPHFHFVEGDISIHSEWIEYH   64 (345)
T ss_dssp             EEE-EETCS------SHHHHHH---HHHHHHSTTCEEEEEESCCGGGGG----G---TTCTTEEEEECCTTTCSHHHHHH
T ss_pred             eEE-EECCC------cHHHHHH---HHHHHHhCCCEEEEEeCCcchHHH----h---hcCCCeEEEeccccCcHHHHHhh
Confidence            566 99999      9999999   5556666 66665  466544322    1   1134788999999984 556655


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++       .+|+|||+||...+..  ..++.+..+++|+.++..+++++..     .+  .+||++||...+.... ..
T Consensus        65 ~~-------~~d~vih~A~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~-----~~--~~~v~~SS~~v~g~~~-~~  127 (345)
T 2bll_A           65 VK-------KCDVVLPLVAIATPIE--YTRNPLRVFELDFEENLRIIRYCVK-----YR--KRIIFPSTSEVYGMCS-DK  127 (345)
T ss_dssp             HH-------HCSEEEECBCCCCHHH--HHHSHHHHHHHHTHHHHHHHHHHHH-----TT--CEEEEECCGGGGBTCC-CS
T ss_pred             cc-------CCCEEEEcccccCccc--hhcCHHHHHHHHHHHHHHHHHHHHH-----hC--CeEEEEecHHHcCCCC-CC
Confidence            43       3799999999753211  1245678899999999998888753     23  6999999976553321 11


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      .++.+...........+...|+.+|.+.+.+++.++++.   |++++.+.||.+- +.
T Consensus       128 ~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~G~~  182 (345)
T 2bll_A          128 YFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPR  182 (345)
T ss_dssp             SBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEECSS
T ss_pred             CcCCcccccccCcccCcccccHHHHHHHHHHHHHHHHhc---CCCEEEEcCCcccCCC
Confidence            111111100000000245689999999999999998876   6999999999997 44

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.57  E-value=1.7e-14  Score=119.51  Aligned_cols=160  Identities=9%  Similarity=-0.066  Sum_probs=104.5

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      ++||+++   +.+|.++|+.|+  .|+.+++.+.    .    ...+.++++|++|.++     +
T Consensus         2 kil-VtGat------G~iG~~l---~~~L~~~g~~V~~~~R~~~~~~~~----~----~~~~~~~~~D~~d~~~-----~   58 (224)
T 3h2s_A            2 KIA-VLGAT------GRAGSAI---VAEARRRGHEVLAVVRDPQKAADR----L----GATVATLVKEPLVLTE-----A   58 (224)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHH----T----CTTSEEEECCGGGCCH-----H
T ss_pred             EEE-EEcCC------CHHHHHH---HHHHHHCCCEEEEEEecccccccc----c----CCCceEEecccccccH-----h
Confidence            466 99999      9999999   666667787776  4887765432    1    3478899999999887     1


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      .    +..+|+||||||....     .+    ...+|+.++..++    +.+++. +  +++|++||.++..........
T Consensus        59 ~----~~~~d~vi~~ag~~~~-----~~----~~~~n~~~~~~l~----~a~~~~-~--~~~v~~SS~~~~~~~~~~~~~  118 (224)
T 3h2s_A           59 D----LDSVDAVVDALSVPWG-----SG----RGYLHLDFATHLV----SLLRNS-D--TLAVFILGSASLAMPGADHPM  118 (224)
T ss_dssp             H----HTTCSEEEECCCCCTT-----SS----CTHHHHHHHHHHH----HTCTTC-C--CEEEEECCGGGSBCTTCSSCG
T ss_pred             h----cccCCEEEECCccCCC-----cc----hhhHHHHHHHHHH----HHHHHc-C--CcEEEEecceeeccCCCCccc
Confidence            2    2569999999998621     11    1355666654444    444443 3  799999998765543211000


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-c
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-T  238 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~  238 (292)
                      ..+....     ..+...|+.+|.+.+.+ +.+.   ...|++++.+.||.+. +
T Consensus       119 ~~~~~~~-----~~~~~~y~~sK~~~e~~-~~~~---~~~~i~~~ivrp~~v~g~  164 (224)
T 3h2s_A          119 ILDFPES-----AASQPWYDGALYQYYEY-QFLQ---MNANVNWIGISPSEAFPS  164 (224)
T ss_dssp             GGGCCGG-----GGGSTTHHHHHHHHHHH-HHHT---TCTTSCEEEEEECSBCCC
T ss_pred             cccCCCC-----CccchhhHHHHHHHHHH-HHHH---hcCCCcEEEEcCccccCC
Confidence            0010000     11366899999988854 2222   3458999999999998 5

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.57  E-value=4.1e-16  Score=128.50  Aligned_cols=148  Identities=9%  Similarity=-0.124  Sum_probs=113.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .+++++ ||||+      ++||.++   +.+|.++|.  .|++  |+.++          .  ..++.++++|++|.+++
T Consensus         4 ~~~~vl-VtGat------G~iG~~l---~~~l~~~g~~~~V~~~~r~~~~----------~--~~~~~~~~~D~~~~~~~   61 (215)
T 2a35_A            4 TPKRVL-LAGAT------GLTGEHL---LDRILSEPTLAKVIAPARKALA----------E--HPRLDNPVGPLAELLPQ   61 (215)
T ss_dssp             CCCEEE-EECTT------SHHHHHH---HHHHHHCTTCCEEECCBSSCCC----------C--CTTEECCBSCHHHHGGG
T ss_pred             CCceEE-EECCC------cHHHHHH---HHHHHhCCCCCeEEEEeCCCcc----------c--CCCceEEeccccCHHHH
Confidence            467888 99999      9999999   666667776  6664  65432          1  24678889999988776


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      .+++         +|+||||||....    +.++++..+++|+.++..+++++.+    ...  ++||++||......  
T Consensus        62 ~~~~---------~d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~--~~~v~~Ss~~~~~~--  120 (215)
T 2a35_A           62 LDGS---------IDTAFCCLGTTIK----EAGSEEAFRAVDFDLPLAVGKRALE----MGA--RHYLVVSALGADAK--  120 (215)
T ss_dssp             CCSC---------CSEEEECCCCCHH----HHSSHHHHHHHHTHHHHHHHHHHHH----TTC--CEEEEECCTTCCTT--
T ss_pred             HHhh---------hcEEEECeeeccc----cCCCHHHHHHhhHHHHHHHHHHHHH----cCC--CEEEEECCcccCCC--
Confidence            5543         8999999997531    2456788999999999999988754    234  79999999765532  


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeE-EEEecCCccc-ccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIA-LSSRHCCWKI-TVS  240 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~-v~~v~PG~v~-~~~  240 (292)
                                         +...|+.+|.+.+.+++.       .|++ ++.+.||.+. +..
T Consensus       121 -------------------~~~~y~~sK~~~e~~~~~-------~~~~~~~~vrp~~v~g~~~  157 (215)
T 2a35_A          121 -------------------SSIFYNRVKGELEQALQE-------QGWPQLTIARPSLLFGPRE  157 (215)
T ss_dssp             -------------------CSSHHHHHHHHHHHHHTT-------SCCSEEEEEECCSEESTTS
T ss_pred             -------------------CccHHHHHHHHHHHHHHH-------cCCCeEEEEeCceeeCCCC
Confidence                               345799999999988764       2788 9999999998 543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.56  E-value=9.2e-15  Score=120.80  Aligned_cols=157  Identities=11%  Similarity=-0.001  Sum_probs=99.7

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      ++||+++   +.+|.++|+.|+  .|+.+++++..         ..+.++++|++|.++     +
T Consensus         2 kvl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~-----~   57 (221)
T 3ew7_A            2 KIG-IIGAT------GRAGSRI---LEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTL-----S   57 (221)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCH-----H
T ss_pred             eEE-EEcCC------chhHHHH---HHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhh-----h
Confidence            466 99999      9999999   666667787776  48866544321         368899999999887     2


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      .    +..+|+||||||....           ...+|+.+    ++.+++.+++.+.  +++|++||..+..+.......
T Consensus        58 ~----~~~~d~vi~~ag~~~~-----------~~~~~~~~----~~~l~~a~~~~~~--~~~v~~SS~~~~~~~~~~~~~  116 (221)
T 3ew7_A           58 D----LSDQNVVVDAYGISPD-----------EAEKHVTS----LDHLISVLNGTVS--PRLLVVGGAASLQIDEDGNTL  116 (221)
T ss_dssp             H----HTTCSEEEECCCSSTT-----------TTTSHHHH----HHHHHHHHCSCCS--SEEEEECCCC-----------
T ss_pred             h----hcCCCEEEECCcCCcc-----------ccchHHHH----HHHHHHHHHhcCC--ceEEEEecceEEEcCCCCccc
Confidence            2    2468999999997421           13344444    5555566666555  899999998766543211000


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-c
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-T  238 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~  238 (292)
                      ..+..       ..+...|+.+|.+.+.+ ..+..  ...|++++.+.||.+. +
T Consensus       117 ~~~~~-------~~~~~~y~~~k~~~e~~-~~~~~--~~~gi~~~ivrp~~v~g~  161 (221)
T 3ew7_A          117 LESKG-------LREAPYYPTARAQAKQL-EHLKS--HQAEFSWTYISPSAMFEP  161 (221)
T ss_dssp             ---------------CCCSCCHHHHHHHH-HHHHT--TTTTSCEEEEECSSCCCC
T ss_pred             cccCC-------CCCHHHHHHHHHHHHHH-HHHHh--hccCccEEEEeCcceecC
Confidence            11111       11345689999998876 33332  1458999999999998 5

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.56  E-value=3.1e-14  Score=124.45  Aligned_cols=165  Identities=12%  Similarity=0.027  Sum_probs=118.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +++++ ||||+      ++||..+   +.+|.+.|+.|++  |+.                      ++|++|.+++.++
T Consensus         3 ~~~il-VtGat------G~iG~~l---~~~L~~~g~~v~~~~r~~----------------------~~D~~d~~~~~~~   50 (321)
T 1e6u_A            3 KQRVF-IAGHR------GMVGSAI---RRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDF   50 (321)
T ss_dssp             CEEEE-EETTT------SHHHHHH---HHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHH
T ss_pred             CCEEE-EECCC------cHHHHHH---HHHHHhCCCeEEEEecCc----------------------cCCccCHHHHHHH
Confidence            56777 99999      9999999   6677788887765  321                      3799999999888


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      +++.     ++|+|||+||.... .....++.+..+++|+.++..+++++..    ...  .++|++||...+.... ..
T Consensus        51 ~~~~-----~~d~vih~a~~~~~-~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~--~~~v~~SS~~vyg~~~-~~  117 (321)
T 1e6u_A           51 FASE-----RIDQVYLAAAKVGG-IVANNTYPADFIYQNMMIESNIIHAAHQ----NDV--NKLLFLGSSCIYPKLA-KQ  117 (321)
T ss_dssp             HHHH-----CCSEEEECCCCCCC-HHHHHHCHHHHHHHHHHHHHHHHHHHHH----TTC--CEEEEECCGGGSCTTC-CS
T ss_pred             HHhc-----CCCEEEEcCeecCC-cchhhhCHHHHHHHHHHHHHHHHHHHHH----hCC--CeEEEEccHHHcCCCC-CC
Confidence            7764     58999999997531 1112345678899999999999888754    233  6999999986653321 11


Q ss_pred             CCCccccCcCCCCCChh-hhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         183 TISKSVLSVENYSDFWA-MTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .++.++...   ....+ ...|+.+|.+.+.+++.++++.   |++++.+.||.+- +-.
T Consensus       118 ~~~E~~~~~---~~~~p~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilrp~~v~G~~~  171 (321)
T 1e6u_A          118 PMAESELLQ---GTLEPTNEPYAIAKIAGIKLCESYNRQY---GRDYRSVMPTNLYGPHD  171 (321)
T ss_dssp             SBCGGGTTS---SCCCGGGHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEESTTC
T ss_pred             CcCcccccc---CCCCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEEeCCcCCcCC
Confidence            111111000   01113 4689999999999999998776   6999999999988 443

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.56  E-value=1.2e-14  Score=128.36  Aligned_cols=179  Identities=8%  Similarity=-0.047  Sum_probs=118.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++++++ ||||+      ++||..+   +.+|.+.|+.|++  |+.....+..+++   ....++.++.+|+.+.. 
T Consensus        23 ~~~~~~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~-   88 (343)
T 2b69_A           23 MEKDRKRIL-ITGGA------GFVGSHL---TDKLMMDGHEVTVVDNFFTGRKRNVEHW---IGHENFELINHDVVEPL-   88 (343)
T ss_dssp             ----CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCGGGTGGG---TTCTTEEEEECCTTSCC-
T ss_pred             cccCCCEEE-EEcCc------cHHHHHH---HHHHHHCCCEEEEEeCCCccchhhhhhh---ccCCceEEEeCccCChh-
Confidence            346788888 99999      9999999   5556677877764  5422111111111   11347889999998852 


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                                 +..+|+|||+||......  ..++.+..+++|+.++..+++++...     +  .++|++||...+...
T Consensus        89 -----------~~~~d~vih~A~~~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~-----~--~~~v~~SS~~v~g~~  148 (343)
T 2b69_A           89 -----------YIEVDQIYHLASPASPPN--YMYNPIKTLKTNTIGTLNMLGLAKRV-----G--ARLLLASTSEVYGDP  148 (343)
T ss_dssp             -----------CCCCSEEEECCSCCSHHH--HTTCHHHHHHHHHHHHHHHHHHHHHH-----T--CEEEEEEEGGGGBSC
T ss_pred             -----------hcCCCEEEECccccCchh--hhhCHHHHHHHHHHHHHHHHHHHHHh-----C--CcEEEECcHHHhCCC
Confidence                       357999999999753211  23456788999999999999987642     2  699999997654322


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      . ....+.+.+..  .....+...|+.+|.+.+.+++.++++.   |++++.+.||.+- +.
T Consensus       149 ~-~~~~~E~~~~~--~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilrp~~v~G~~  204 (343)
T 2b69_A          149 E-VHPQSEDYWGH--VNPIGPRACYDEGKRVAETMCYAYMKQE---GVEVRVARIFNTFGPR  204 (343)
T ss_dssp             S-SSSBCTTCCCB--CCSSSTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTT
T ss_pred             C-CCCCccccccc--CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEEcceeCcC
Confidence            1 01111111100  0122356789999999999999998775   6999999999988 53

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.54  E-value=3.4e-14  Score=122.62  Aligned_cols=153  Identities=18%  Similarity=0.198  Sum_probs=111.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .++++ ||||+      ++||.++   +.+|.++|+.|++-+..                     ++|++|.+++.++++
T Consensus        12 ~~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~---------------------~~Dl~d~~~~~~~~~   60 (292)
T 1vl0_A           12 HMKIL-ITGAN------GQLGREI---QKQLKGKNVEVIPTDVQ---------------------DLDITNVLAVNKFFN   60 (292)
T ss_dssp             CEEEE-EESTT------SHHHHHH---HHHHTTSSEEEEEECTT---------------------TCCTTCHHHHHHHHH
T ss_pred             cceEE-EECCC------ChHHHHH---HHHHHhCCCeEEeccCc---------------------cCCCCCHHHHHHHHH
Confidence            46777 99999      9999999   67777888888752211                     389999999988877


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      ..     ++|+|||+||....  +.+.++++..+++|+.++..+++++.+.     +  .+||++||...+.+.. ...+
T Consensus        61 ~~-----~~d~vih~A~~~~~--~~~~~~~~~~~~~nv~~~~~l~~a~~~~-----~--~~iv~~SS~~v~~~~~-~~~~  125 (292)
T 1vl0_A           61 EK-----KPNVVINCAAHTAV--DKCEEQYDLAYKINAIGPKNLAAAAYSV-----G--AEIVQISTDYVFDGEA-KEPI  125 (292)
T ss_dssp             HH-----CCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHH-----T--CEEEEEEEGGGSCSCC-SSCB
T ss_pred             hc-----CCCEEEECCccCCH--HHHhcCHHHHHHHHHHHHHHHHHHHHHc-----C--CeEEEechHHeECCCC-CCCC
Confidence            65     69999999997532  1234678899999999999999998752     2  6999999986554321 0111


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      +.+       ....+...|+.+|.+.+.+++.++.+       +..+.|+.+-
T Consensus       126 ~E~-------~~~~~~~~Y~~sK~~~E~~~~~~~~~-------~~~lR~~~v~  164 (292)
T 1vl0_A          126 TEF-------DEVNPQSAYGKTKLEGENFVKALNPK-------YYIVRTAWLY  164 (292)
T ss_dssp             CTT-------SCCCCCSHHHHHHHHHHHHHHHHCSS-------EEEEEECSEE
T ss_pred             CCC-------CCCCCccHHHHHHHHHHHHHHhhCCC-------eEEEeeeeee
Confidence            111       11224568999999999999887642       5566676666

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.53  E-value=3.3e-14  Score=136.40  Aligned_cols=181  Identities=6%  Similarity=-0.109  Sum_probs=122.4

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH-
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS-   98 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~-   98 (292)
                      +++++++ ||||+      ++||.++   +.+|.+. |+.|+  .|+.++.++    +   ....++.++.+|+++.++ 
T Consensus       313 ~~~~~VL-VTGat------G~IG~~l---~~~Ll~~~g~~V~~~~r~~~~~~~----~---~~~~~v~~v~~Dl~d~~~~  375 (660)
T 1z7e_A          313 RRRTRVL-ILGVN------GFIGNHL---TERLLREDHYEVYGLDIGSDAISR----F---LNHPHFHFVEGDISIHSEW  375 (660)
T ss_dssp             -CCEEEE-EETTT------SHHHHHH---HHHHHHSSSEEEEEEESCCTTTGG----G---TTCTTEEEEECCTTTCHHH
T ss_pred             ccCceEE-EEcCC------cHHHHHH---HHHHHhcCCCEEEEEEcCchhhhh----h---ccCCceEEEECCCCCcHHH
Confidence            5778888 99999      9999999   5556666 66665  466543221    1   113478899999999765 


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++       ++|+|||+||...+.  ...++.+..+++|+.++..+++++...     +  .++|++||...+...
T Consensus       376 ~~~~~~-------~~D~Vih~Aa~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~-----~--~r~V~~SS~~vyg~~  439 (660)
T 1z7e_A          376 IEYHVK-------KCDVVLPLVAIATPI--EYTRNPLRVFELDFEENLRIIRYCVKY-----R--KRIIFPSTSEVYGMC  439 (660)
T ss_dssp             HHHHHH-------HCSEEEECCCCCCTH--HHHHSHHHHHHHHTHHHHHHHHHHHHT-----T--CEEEEECCGGGGBTC
T ss_pred             HHHhhc-------CCCEEEECceecCcc--ccccCHHHHHHhhhHHHHHHHHHHHHh-----C--CEEEEEecHHHcCCC
Confidence            554443       489999999976421  123456789999999999988887542     2  699999998665432


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      . ...++.++..........+...|+.||.+.+.+++.++++.   |++++.+.||.+. +..
T Consensus       440 ~-~~~~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRpg~v~Gp~~  498 (660)
T 1z7e_A          440 S-DKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPRL  498 (660)
T ss_dssp             C-SSSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEESTTS
T ss_pred             C-CcccCCCccccccCcccCCCCCcHHHHHHHHHHHHHHHHHc---CCCEEEECCCcccCCCc
Confidence            1 11111111100000001245689999999999999998776   6999999999998 543

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.53  E-value=2e-14  Score=122.74  Aligned_cols=152  Identities=14%  Similarity=0.046  Sum_probs=108.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      ++||.++   +.+|.+ |+.|+  .|+.+.         .  ++     +++|++|.+++.++++
T Consensus         2 ~il-VtGat------G~iG~~l---~~~L~~-g~~V~~~~r~~~~---------~--~~-----~~~Dl~~~~~~~~~~~   54 (273)
T 2ggs_A            2 RTL-ITGAS------GQLGIEL---SRLLSE-RHEVIKVYNSSEI---------Q--GG-----YKLDLTDFPRLEDFII   54 (273)
T ss_dssp             CEE-EETTT------SHHHHHH---HHHHTT-TSCEEEEESSSCC---------T--TC-----EECCTTSHHHHHHHHH
T ss_pred             EEE-EECCC------ChhHHHH---HHHHhc-CCeEEEecCCCcC---------C--CC-----ceeccCCHHHHHHHHH
Confidence            466 99999      9999999   555553 55555  465421         0  12     7899999999999887


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      .+     ++|+||||||....  +.+.++++..+++|+.++..+++++.+     .+  ++||++||.....+...  .+
T Consensus        55 ~~-----~~d~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~--~~iv~~SS~~~~~~~~~--~~  118 (273)
T 2ggs_A           55 KK-----RPDVIINAAAMTDV--DKCEIEKEKAYKINAEAVRHIVRAGKV-----ID--SYIVHISTDYVFDGEKG--NY  118 (273)
T ss_dssp             HH-----CCSEEEECCCCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHH-----TT--CEEEEEEEGGGSCSSSC--SB
T ss_pred             hc-----CCCEEEECCcccCh--hhhhhCHHHHHHHhHHHHHHHHHHHHH-----hC--CeEEEEecceeEcCCCC--Cc
Confidence            76     69999999997532  223467889999999999999998864     23  79999999877643211  11


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEec
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRH  232 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~  232 (292)
                      ..       .....+...|+.+|.+.+.+++.    +....+|++.|.
T Consensus       119 ~e-------~~~~~~~~~Y~~sK~~~e~~~~~----~~~~~iR~~~v~  155 (273)
T 2ggs_A          119 KE-------EDIPNPINYYGLSKLLGETFALQ----DDSLIIRTSGIF  155 (273)
T ss_dssp             CT-------TSCCCCSSHHHHHHHHHHHHHCC----TTCEEEEECCCB
T ss_pred             CC-------CCCCCCCCHHHHHHHHHHHHHhC----CCeEEEeccccc
Confidence            11       11122467899999999999887    333356766666

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.52  E-value=5.6e-14  Score=120.93  Aligned_cols=151  Identities=15%  Similarity=0.161  Sum_probs=113.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      +++ ||||+      ++||..+   +.+|.++|+.|++-+.                     .++|++|.+++.++++..
T Consensus         7 ~il-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r---------------------~~~D~~d~~~~~~~~~~~   55 (287)
T 3sc6_A            7 RVI-ITGAN------GQLGKQL---QEELNPEEYDIYPFDK---------------------KLLDITNISQVQQVVQEI   55 (287)
T ss_dssp             EEE-EESTT------SHHHHHH---HHHSCTTTEEEEEECT---------------------TTSCTTCHHHHHHHHHHH
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHhCCCEEEEecc---------------------cccCCCCHHHHHHHHHhc
Confidence            677 99999      9999999   7778888988876221                     248999999999988776


Q ss_pred             HHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCc
Q psy4251         107 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK  186 (292)
Q Consensus       107 ~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~  186 (292)
                           ++|+|||+||....  ....++++..+++|+.++..+++++.+.     +  .+||++||...+.... ...++.
T Consensus        56 -----~~d~vi~~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~--~~~v~~SS~~vy~~~~-~~~~~E  120 (287)
T 3sc6_A           56 -----RPHIIIHCAAYTKV--DQAEKERDLAYVINAIGARNVAVASQLV-----G--AKLVYISTDYVFQGDR-PEGYDE  120 (287)
T ss_dssp             -----CCSEEEECCCCCCH--HHHTTCHHHHHHHHTHHHHHHHHHHHHH-----T--CEEEEEEEGGGSCCCC-SSCBCT
T ss_pred             -----CCCEEEECCcccCh--HHHhcCHHHHHHHHHHHHHHHHHHHHHc-----C--CeEEEEchhhhcCCCC-CCCCCC
Confidence                 68999999998642  2234678899999999999999988543     2  6899999986553321 111111


Q ss_pred             cccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       187 ~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                             .....+...|+.+|.+.+.+++.++.       .++.+.||.+-
T Consensus       121 -------~~~~~p~~~Y~~sK~~~E~~~~~~~~-------~~~ilR~~~v~  157 (287)
T 3sc6_A          121 -------FHNPAPINIYGASKYAGEQFVKELHN-------KYFIVRTSWLY  157 (287)
T ss_dssp             -------TSCCCCCSHHHHHHHHHHHHHHHHCS-------SEEEEEECSEE
T ss_pred             -------CCCCCCCCHHHHHHHHHHHHHHHhCC-------CcEEEeeeeec
Confidence                   12223567899999999999988765       25788888886

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.51  E-value=1.7e-14  Score=125.39  Aligned_cols=170  Identities=10%  Similarity=-0.033  Sum_probs=117.2

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      ++ ||||+      ++||..+   +.+|.+.| +.|+  .|+.....  ...+.    +..   +.+|+++.+.++++++
T Consensus         2 vl-VtGat------G~iG~~l---~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~~~---~~~d~~~~~~~~~~~~   62 (310)
T 1eq2_A            2 II-VTGGA------GFIGSNI---VKALNDKGITDILVVDNLKDGTK--FVNLV----DLN---IADYMDKEDFLIQIMA   62 (310)
T ss_dssp             EE-EETTT------SHHHHHH---HHHHHTTTCCCEEEEECCSSGGG--GHHHH----TSC---CSEEEEHHHHHHHHHT
T ss_pred             EE-EEcCc------cHHHHHH---HHHHHHCCCcEEEEEccCCCCch--hhhcC----cce---eccccccHHHHHHHHh
Confidence            55 99999      9999999   55666777 5555  35433211  11222    112   6789998888777654


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      ...  ++++|+|||+||....    +.++.+..+++|+.++..+++++.+.     +  .++|++||...+.... ...+
T Consensus        63 ~~~--~~~~d~vi~~a~~~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~-----~--~~~v~~SS~~v~g~~~-~~~~  128 (310)
T 1eq2_A           63 GEE--FGDVEAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLER-----E--IPFLYASSAATYGGRT-SDFI  128 (310)
T ss_dssp             TCC--CSSCCEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHHH-----T--CCEEEEEEGGGGTTCC-SCBC
T ss_pred             ccc--cCCCcEEEECcccccC----cccCHHHHHHHHHHHHHHHHHHHHHc-----C--CeEEEEeeHHHhCCCC-CCCC
Confidence            211  2369999999997643    45567889999999999999988642     2  4999999986543221 1111


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      +.+..       ..+...|+.+|.+.+.+++.++++.   |++++.+.||.+- +..
T Consensus       129 ~E~~~-------~~p~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~lrp~~v~G~~~  175 (310)
T 1eq2_A          129 ESREY-------EKPLNVYGYSKFLFDEYVRQILPEA---NSQIVGFRYFNVYGPRE  175 (310)
T ss_dssp             SSGGG-------CCCSSHHHHHHHHHHHHHHHHGGGC---SSCEEEEEECEEESSSC
T ss_pred             CCCCC-------CCCCChhHHHHHHHHHHHHHHHHHc---CCCEEEEeCCcEECcCC
Confidence            11111       1246689999999999999988763   7999999999988 543

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.50  E-value=1.5e-13  Score=127.90  Aligned_cols=177  Identities=12%  Similarity=-0.034  Sum_probs=119.0

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHH---HHHHHHHHHHhhC-------CCCceEEEEcc
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWD---KANDAISKILTEK-------PSAQCIAMELD   92 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~---~~~~~~~~l~~~~-------~~~~~~~~~~D   92 (292)
                      .++++ |||||      +.||..+   +.+|...|..|++  |+..   ..+...+.+...+       ...++.++.+|
T Consensus       150 ~~~VL-VTGat------G~iG~~l---~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~D  219 (508)
T 4f6l_B          150 LGNTL-LTGAT------GFLGAYL---IEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGD  219 (508)
T ss_dssp             CEEEE-ESCTT------SHHHHHH---HHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEB
T ss_pred             CCeEE-EECCc------cchHHHH---HHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecC
Confidence            46777 99999      9999999   6667778887764  6644   2333333332211       13589999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          93 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        93 ls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +++.+++.        ....+|+|||||+...     ....++..+++|+.++..+++++..     ..  .++|++||.
T Consensus       220 l~d~~~l~--------~~~~~D~Vih~Aa~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~-----~~--~~~v~iSS~  279 (508)
T 4f6l_B          220 FECMDDVV--------LPENMDTIIHAGARTD-----HFGDDDEFEKVNVQGTVDVIRLAQQ-----HH--ARLIYVSTI  279 (508)
T ss_dssp             TTBCSSCC--------CSSCCSEEEECCCC-------------CCHHHHHHHHHHHHHHHHT-----TT--CEEEEEEES
T ss_pred             CcccccCC--------CccCCCEEEECCceec-----CCCCHHHHhhhHHHHHHHHHHHHHh-----CC--CcEEEeCCh
Confidence            99988776        3468999999999763     1234677889999999999998764     33  799999998


Q ss_pred             ccccccCC----CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         173 SHRYSYIT----KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       173 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .. .....    ...+..++...    ...+...|+.+|.+.+.+++.+++    .|++++.+.||.|- +..
T Consensus       280 ~v-G~~~~~~~~~~~~~E~~~~~----~~~~~~~Y~~sK~~~E~~~~~~~~----~gi~~~ilRp~~v~G~~~  343 (508)
T 4f6l_B          280 SV-GTYFDIDTEDVTFSEADVYK----GQLLTSPYTRSKFYSELKVLEAVN----NGLDGRIVRVGNLTSPYN  343 (508)
T ss_dssp             CT-TSEECTTCSCCEECTTCSCS----SBCCCSHHHHHHHHHHHHHHHHHH----TTCEEEEEEECCEESCSS
T ss_pred             hh-ccCCccCCcCcccccccccc----cccCCCcHHHHHHHHHHHHHHHHH----cCCCEEEEecceeccCCC
Confidence            76 11100    00011111100    011467899999999999988654    48999999999998 443

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.46  E-value=2.7e-13  Score=117.22  Aligned_cols=154  Identities=12%  Similarity=-0.026  Sum_probs=112.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ ||||+      ++||..+   +.+|. +|+.|++  |+.                   .++.+|++|.+++.++++
T Consensus         2 ~il-VtGat------G~iG~~l---~~~L~-~g~~V~~~~r~~-------------------~~~~~D~~d~~~~~~~~~   51 (299)
T 1n2s_A            2 NIL-LFGKT------GQVGWEL---QRSLA-PVGNLIALDVHS-------------------KEFCGDFSNPKGVAETVR   51 (299)
T ss_dssp             EEE-EECTT------SHHHHHH---HHHTT-TTSEEEEECTTC-------------------SSSCCCTTCHHHHHHHHH
T ss_pred             eEE-EECCC------CHHHHHH---HHHhh-cCCeEEEecccc-------------------ccccccCCCHHHHHHHHH
Confidence            466 99999      9999999   66676 6888875  432                   135799999999888877


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      ..     ++|+|||+||....  ..+.++.+..+++|+.++..+++++..     .+  .|+|++||...+.... ...+
T Consensus        52 ~~-----~~d~vih~a~~~~~--~~~~~~~~~~~~~n~~~~~~l~~a~~~-----~~--~~~v~~SS~~vy~~~~-~~~~  116 (299)
T 1n2s_A           52 KL-----RPDVIVNAAAHTAV--DKAESEPELAQLLNATSVEAIAKAANE-----TG--AWVVHYSTDYVFPGTG-DIPW  116 (299)
T ss_dssp             HH-----CCSEEEECCCCCCH--HHHTTCHHHHHHHHTHHHHHHHHHHTT-----TT--CEEEEEEEGGGSCCCT-TCCB
T ss_pred             hc-----CCCEEEECcccCCH--hhhhcCHHHHHHHHHHHHHHHHHHHHH-----cC--CcEEEEecccEEeCCC-CCCC
Confidence            64     58999999997532  123456788999999999999988742     23  6899999986654321 0011


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      +.       .....+...|+.+|.+.+.+++.++.       +++.+.||.+- +.
T Consensus       117 ~E-------~~~~~p~~~Y~~sK~~~E~~~~~~~~-------~~~ilRp~~v~G~~  158 (299)
T 1n2s_A          117 QE-------TDATSPLNVYGKTKLAGEKALQDNCP-------KHLIFRTSWVYAGK  158 (299)
T ss_dssp             CT-------TSCCCCSSHHHHHHHHHHHHHHHHCS-------SEEEEEECSEECSS
T ss_pred             CC-------CCCCCCccHHHHHHHHHHHHHHHhCC-------CeEEEeeeeecCCC
Confidence            11       11222567899999999999887653       58899999987 53

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.44  E-value=1.4e-14  Score=126.49  Aligned_cols=168  Identities=11%  Similarity=-0.134  Sum_probs=108.4

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +.+++++ ||||+      ++||..+   +.+|.+.|+.|++  |+........+.+........+.++.+|++      
T Consensus         5 ~~~~~vl-VtGat------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~------   68 (321)
T 3vps_A            5 TLKHRIL-ITGGA------GFIGGHL---ARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS------   68 (321)
T ss_dssp             --CCEEE-EETTT------SHHHHHH---HHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT------
T ss_pred             cCCCeEE-EECCC------ChHHHHH---HHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc------
Confidence            4578888 99999      9999999   5566677777764  543210000001111111234555566665      


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                                 ++|+|||+||......  ..+..+..++ |+.++..+++++...    +.  .+||++||...+.... 
T Consensus        69 -----------~~d~vi~~a~~~~~~~--~~~~~~~~~~-n~~~~~~ll~a~~~~----~v--~~~v~~SS~~v~~~~~-  127 (321)
T 3vps_A           69 -----------DVRLVYHLASHKSVPR--SFKQPLDYLD-NVDSGRHLLALCTSV----GV--PKVVVGSTCEVYGQAD-  127 (321)
T ss_dssp             -----------TEEEEEECCCCCCHHH--HTTSTTTTHH-HHHHHHHHHHHHHHH----TC--CEEEEEEEGGGGCSCS-
T ss_pred             -----------cCCEEEECCccCChHH--HHhCHHHHHH-HHHHHHHHHHHHHHc----CC--CeEEEecCHHHhCCCC-
Confidence                       6999999999764211  1223344566 999999988887543    33  7999999987654321 


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCe-EEEEecCCccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI-ALSSRHCCWKI  237 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi-~v~~v~PG~v~  237 (292)
                      ...++.       .....+...|+.+|.+.+.+++.++++.   |+ +++.+.||.+-
T Consensus       128 ~~~~~E-------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~ilRp~~v~  175 (321)
T 3vps_A          128 TLPTPE-------DSPLSPRSPYAASKVGLEMVAGAHQRAS---VAPEVGIVRFFNVY  175 (321)
T ss_dssp             SSSBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHSS---SSCEEEEEEECEEE
T ss_pred             CCCCCC-------CCCCCCCChhHHHHHHHHHHHHHHHHHc---CCCceEEEEecccc
Confidence            111111       2223356789999999999999988764   68 99999999888

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.39  E-value=1.1e-12  Score=112.80  Aligned_cols=142  Identities=11%  Similarity=0.021  Sum_probs=103.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc--CcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS--SKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~--g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      |+++ ||||+      ++||..+   +.+|.+.  |+.|+  .|+.++.+.    +..    ..+.++.+|++|.+++.+
T Consensus         1 ~~il-VtGat------G~iG~~l---~~~L~~~~~g~~V~~~~r~~~~~~~----l~~----~~~~~~~~D~~d~~~l~~   62 (287)
T 2jl1_A            1 FSIA-VTGAT------GQLGGLV---IQHLLKKVPASQIIAIVRNVEKAST----LAD----QGVEVRHGDYNQPESLQK   62 (287)
T ss_dssp             CCEE-ETTTT------SHHHHHH---HHHHTTTSCGGGEEEEESCTTTTHH----HHH----TTCEEEECCTTCHHHHHH
T ss_pred             CeEE-EEcCC------chHHHHH---HHHHHHhCCCCeEEEEEcCHHHHhH----Hhh----cCCeEEEeccCCHHHHHH
Confidence            3566 99999      9999999   6666666  76655  477554432    222    257789999999988777


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++       .+|+|||+||..       .+.     ++|+.++..+++++.    +.+.  .+||++||.....     
T Consensus        63 ~~~-------~~d~vi~~a~~~-------~~~-----~~n~~~~~~l~~a~~----~~~~--~~~v~~Ss~~~~~-----  112 (287)
T 2jl1_A           63 AFA-------GVSKLLFISGPH-------YDN-----TLLIVQHANVVKAAR----DAGV--KHIAYTGYAFAEE-----  112 (287)
T ss_dssp             HTT-------TCSEEEECCCCC-------SCH-----HHHHHHHHHHHHHHH----HTTC--SEEEEEEETTGGG-----
T ss_pred             HHh-------cCCEEEEcCCCC-------cCc-----hHHHHHHHHHHHHHH----HcCC--CEEEEECCCCCCC-----
Confidence            643       489999999952       111     578888888777764    3344  7999999976531     


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                                       ....|+.+|.+.+.+++.       .|++++.+.||++. +.
T Consensus       113 -----------------~~~~y~~~K~~~E~~~~~-------~~~~~~ilrp~~~~~~~  147 (287)
T 2jl1_A          113 -----------------SIIPLAHVHLATEYAIRT-------TNIPYTFLRNALYTDFF  147 (287)
T ss_dssp             -----------------CCSTHHHHHHHHHHHHHH-------TTCCEEEEEECCBHHHH
T ss_pred             -----------------CCCchHHHHHHHHHHHHH-------cCCCeEEEECCEecccc
Confidence                             112699999999988753       47999999999887 54

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.39  E-value=1.7e-13  Score=117.90  Aligned_cols=157  Identities=12%  Similarity=-0.075  Sum_probs=107.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +++++ ||| +      +.||..+   +.+|.+.|+.|++  |+.++.            ...+.++++|++|.+++.++
T Consensus         3 ~~~il-VtG-a------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~Dl~d~~~~~~~   59 (286)
T 3gpi_A            3 LSKIL-IAG-C------GDLGLEL---ARRLTAQGHEVTGLRRSAQPM------------PAGVQTLIADVTRPDTLASI   59 (286)
T ss_dssp             CCCEE-EEC-C------SHHHHHH---HHHHHHTTCCEEEEECTTSCC------------CTTCCEEECCTTCGGGCTTG
T ss_pred             CCcEE-EEC-C------CHHHHHH---HHHHHHCCCEEEEEeCCcccc------------ccCCceEEccCCChHHHHHh
Confidence            56788 999 7      8999999   5566677777664  654321            24788899999999988776


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++      +++|+|||+||..       .++.+..+++|+.++..+++++.    +.+.  .+||++||...+... ...
T Consensus        60 ~~------~~~d~vih~a~~~-------~~~~~~~~~~n~~~~~~ll~a~~----~~~~--~~~v~~SS~~vyg~~-~~~  119 (286)
T 3gpi_A           60 VH------LRPEILVYCVAAS-------EYSDEHYRLSYVEGLRNTLSALE----GAPL--QHVFFVSSTGVYGQE-VEE  119 (286)
T ss_dssp             GG------GCCSEEEECHHHH-------HHC-----CCSHHHHHHHHHHTT----TSCC--CEEEEEEEGGGCCCC-CSS
T ss_pred             hc------CCCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHHHHHHh----hCCC--CEEEEEcccEEEcCC-CCC
Confidence            54      3699999999974       23456778899999988888764    3344  799999998655332 111


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      .++.       .....+...|+.+|.+.+.+ +..        ++++.+.||.+- +..
T Consensus       120 ~~~E-------~~~~~p~~~Y~~sK~~~E~~-~~~--------~~~~ilR~~~v~G~~~  162 (286)
T 3gpi_A          120 WLDE-------DTPPIAKDFSGKRMLEAEAL-LAA--------YSSTILRFSGIYGPGR  162 (286)
T ss_dssp             EECT-------TSCCCCCSHHHHHHHHHHHH-GGG--------SSEEEEEECEEEBTTB
T ss_pred             CCCC-------CCCCCCCChhhHHHHHHHHH-Hhc--------CCeEEEecccccCCCc
Confidence            1111       12223567899999998887 432        678999999888 543

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.37  E-value=4e-12  Score=110.02  Aligned_cols=154  Identities=8%  Similarity=-0.099  Sum_probs=101.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .++++ ||||+      ++||..+   +.+|.+.| +.|+  .|+.++..  .+++..    ..+.++++|++|.+++.+
T Consensus         5 ~~~il-VtGat------G~iG~~l---~~~L~~~g~~~V~~~~R~~~~~~--~~~l~~----~~~~~~~~D~~d~~~l~~   68 (299)
T 2wm3_A            5 KKLVV-VFGGT------GAQGGSV---ARTLLEDGTFKVRVVTRNPRKKA--AKELRL----QGAEVVQGDQDDQVIMEL   68 (299)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHHCSSEEEEEESCTTSHH--HHHHHH----TTCEEEECCTTCHHHHHH
T ss_pred             CCEEE-EECCC------chHHHHH---HHHHHhcCCceEEEEEcCCCCHH--HHHHHH----CCCEEEEecCCCHHHHHH
Confidence            46777 99999      9999999   44455556 5554  47754432  123332    257889999999998877


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++       .+|+||||+|.....          ....|+.+    ++.+++.+++.+.  ++||++|+.......   
T Consensus        69 ~~~-------~~d~vi~~a~~~~~~----------~~~~~~~~----~~~~~~aa~~~gv--~~iv~~S~~~~~~~~---  122 (299)
T 2wm3_A           69 ALN-------GAYATFIVTNYWESC----------SQEQEVKQ----GKLLADLARRLGL--HYVVYSGLENIKKLT---  122 (299)
T ss_dssp             HHT-------TCSEEEECCCHHHHT----------CHHHHHHH----HHHHHHHHHHHTC--SEEEECCCCCHHHHT---
T ss_pred             HHh-------cCCEEEEeCCCCccc----------cchHHHHH----HHHHHHHHHHcCC--CEEEEEcCccccccC---
Confidence            654       489999999864211          12344444    4445555555555  799996664332211   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                                  +..  ....|+.+|.+++.+.+.       .|++++.+.||++. ++..
T Consensus       123 ------------~~~--~~~~y~~sK~~~e~~~~~-------~gi~~~ilrp~~~~~~~~~  162 (299)
T 2wm3_A          123 ------------AGR--LAAAHFDGKGEVEEYFRD-------IGVPMTSVRLPCYFENLLS  162 (299)
T ss_dssp             ------------TTS--CCCHHHHHHHHHHHHHHH-------HTCCEEEEECCEEGGGGGT
T ss_pred             ------------CCc--ccCchhhHHHHHHHHHHH-------CCCCEEEEeecHHhhhchh
Confidence                        000  235699999999988764       27999999999998 6543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.30  E-value=5.5e-12  Score=108.21  Aligned_cols=138  Identities=10%  Similarity=-0.021  Sum_probs=94.6

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhc--CcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQS--SKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~--g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++ ||||+      ++||..+   +.+|.+.  |+.|+  .|+.++.+.    +..    ..+.++++|++|.+++.+++
T Consensus         2 il-VtGat------G~iG~~l---~~~L~~~~~g~~V~~~~r~~~~~~~----~~~----~~~~~~~~D~~d~~~~~~~~   63 (286)
T 2zcu_A            2 IA-ITGAT------GQLGHYV---IESLMKTVPASQIVAIVRNPAKAQA----LAA----QGITVRQADYGDEAALTSAL   63 (286)
T ss_dssp             EE-EESTT------SHHHHHH---HHHHTTTSCGGGEEEEESCTTTCHH----HHH----TTCEEEECCTTCHHHHHHHT
T ss_pred             EE-EEcCC------chHHHHH---HHHHHhhCCCceEEEEEcChHhhhh----hhc----CCCeEEEcCCCCHHHHHHHH
Confidence            55 99999      9999999   6666666  76665  477554432    222    25788999999998877664


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      +       .+|+|||+||...              ..|+.++..+++++    .+.+.  ++||++||.... .      
T Consensus        64 ~-------~~d~vi~~a~~~~--------------~~~~~~~~~l~~a~----~~~~~--~~~v~~Ss~~~~-~------  109 (286)
T 2zcu_A           64 Q-------GVEKLLLISSSEV--------------GQRAPQHRNVINAA----KAAGV--KFIAYTSLLHAD-T------  109 (286)
T ss_dssp             T-------TCSEEEECC----------------------CHHHHHHHHH----HHHTC--CEEEEEEETTTT-T------
T ss_pred             h-------CCCEEEEeCCCCc--------------hHHHHHHHHHHHHH----HHcCC--CEEEEECCCCCC-C------
Confidence            3       4799999999521              13555665555554    33344  799999997654 1      


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                                     ....|+.+|.+.+.+++.       .|++++.+.||++. ++
T Consensus       110 ---------------~~~~y~~sK~~~e~~~~~-------~~~~~~ilrp~~~~~~~  144 (286)
T 2zcu_A          110 ---------------SPLGLADEHIETEKMLAD-------SGIVYTLLRNGWYSENY  144 (286)
T ss_dssp             ---------------CCSTTHHHHHHHHHHHHH-------HCSEEEEEEECCBHHHH
T ss_pred             ---------------CcchhHHHHHHHHHHHHH-------cCCCeEEEeChHHhhhh
Confidence                           113699999999988763       37999999999887 54

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.29  E-value=1.9e-11  Score=108.94  Aligned_cols=132  Identities=14%  Similarity=-0.002  Sum_probs=102.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccC-CChHHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDL-CRLKSVKKFAEE  105 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl-s~~~~v~~~~~~  105 (292)
                      +++ ||||+      +.||+.+   +.+|.++|.                         +.++.+|. +|.++++++++ 
T Consensus         2 ~Vl-VtGat------G~iG~~l---~~~L~~~g~-------------------------~~v~~~d~~~d~~~l~~~~~-   45 (369)
T 3st7_A            2 NIV-ITGAK------GFVGKNL---KADLTSTTD-------------------------HHIFEVHRQTKEEELESALL-   45 (369)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHHHCC-------------------------CEEEECCTTCCHHHHHHHHH-
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHhCCC-------------------------CEEEEECCCCCHHHHHHHhc-
Confidence            466 99999      9999999   555656665                         23455677 88888888876 


Q ss_pred             HHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCC
Q psy4251         106 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS  185 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~  185 (292)
                            .+|+|||+||...+      ++.+..+++|+.++..+++++.    +.+. ..++|++||.....         
T Consensus        46 ------~~d~Vih~a~~~~~------~~~~~~~~~n~~~~~~l~~a~~----~~~~-~~~~v~~Ss~~~~~---------   99 (369)
T 3st7_A           46 ------KADFIVHLAGVNRP------EHDKEFSLGNVSYLDHVLDILT----RNTK-KPAILLSSSIQATQ---------   99 (369)
T ss_dssp             ------HCSEEEECCCSBCT------TCSTTCSSSCCBHHHHHHHHHT----TCSS-CCEEEEEEEGGGGS---------
T ss_pred             ------cCCEEEECCcCCCC------CCHHHHHHHHHHHHHHHHHHHH----HhCC-CCeEEEeCchhhcC---------
Confidence                  38999999997642      3456678899999998888763    3332 03899999986542         


Q ss_pred             ccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         186 KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       186 ~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                                    ...|+.+|.+.+.+++.++++.   |+++..+.||.+-
T Consensus       100 --------------~~~Y~~sK~~~E~~~~~~~~~~---g~~~~i~R~~~v~  134 (369)
T 3st7_A          100 --------------DNPYGESKLQGEQLLREYAEEY---GNTVYIYRWPNLF  134 (369)
T ss_dssp             --------------CSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEE
T ss_pred             --------------CCCchHHHHHHHHHHHHHHHHh---CCCEEEEECCcee
Confidence                          3479999999999999998876   5889999999887

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.28  E-value=1.6e-11  Score=108.91  Aligned_cols=149  Identities=7%  Similarity=-0.044  Sum_probs=100.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEcc-CCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELD-LCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~D-ls~~~~v~  100 (292)
                      .+++++ |||||      ++||..+   +.+|.+.|+.|+  .|+.++..  .+++..   ...+.++++| ++|.+++.
T Consensus         4 ~~~~il-VtGat------G~iG~~l---~~~L~~~g~~V~~~~R~~~~~~--~~~l~~---~~~v~~v~~D~l~d~~~l~   68 (352)
T 1xgk_A            4 QKKTIA-VVGAT------GRQGASL---IRVAAAVGHHVRAQVHSLKGLI--AEELQA---IPNVTLFQGPLLNNVPLMD   68 (352)
T ss_dssp             CCCCEE-EESTT------SHHHHHH---HHHHHHTTCCEEEEESCSCSHH--HHHHHT---STTEEEEESCCTTCHHHHH
T ss_pred             CCCEEE-EECCC------CHHHHHH---HHHHHhCCCEEEEEECCCChhh--HHHHhh---cCCcEEEECCccCCHHHHH
Confidence            356788 99999      9999999   555556676665  47654431  123332   2368889999 99999887


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccc-cccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESH-RYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~-~~~~  178 (292)
                      ++++       .+|+||||++...             ...|..+     +.+++.+++.+ .  ++||++||... ..+.
T Consensus        69 ~~~~-------~~d~Vi~~a~~~~-------------~~~~~~~-----~~l~~aa~~~g~v--~~~V~~SS~~~~~~~~  121 (352)
T 1xgk_A           69 TLFE-------GAHLAFINTTSQA-------------GDEIAIG-----KDLADAAKRAGTI--QHYIYSSMPDHSLYGP  121 (352)
T ss_dssp             HHHT-------TCSEEEECCCSTT-------------SCHHHHH-----HHHHHHHHHHSCC--SEEEEEECCCGGGTSS
T ss_pred             HHHh-------cCCEEEEcCCCCC-------------cHHHHHH-----HHHHHHHHHcCCc--cEEEEeCCccccccCC
Confidence            7643       4799999987531             0224433     44444445544 5  79999999752 2211


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                                  .       ....|+.+|.+.+.++++.       |++++.|.||++- +..
T Consensus       122 ------------~-------~~~~y~~sK~~~E~~~~~~-------gi~~~ivrpg~~g~~~~  158 (352)
T 1xgk_A          122 ------------W-------PAVPMWAPKFTVENYVRQL-------GLPSTFVYAGIYNNNFT  158 (352)
T ss_dssp             ------------C-------CCCTTTHHHHHHHHHHHTS-------SSCEEEEEECEEGGGCB
T ss_pred             ------------C-------CCccHHHHHHHHHHHHHHc-------CCCEEEEecceecCCch
Confidence                        1       2356899999999888752       7999999999876 443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.27  E-value=7.1e-11  Score=104.30  Aligned_cols=149  Identities=13%  Similarity=0.024  Sum_probs=101.5

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCH----HHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCW----DKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~----~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++ |||||      +.||..+++   +|.+.|+.|+  .|+.    ++.+ ..+++..    ..+.++++|++|.++
T Consensus        10 ~~~Il-VtGat------G~iG~~l~~---~L~~~g~~V~~l~R~~~~~~~~~~-~~~~l~~----~~v~~~~~Dl~d~~~   74 (346)
T 3i6i_A           10 KGRVL-IAGAT------GFIGQFVAT---ASLDAHRPTYILARPGPRSPSKAK-IFKALED----KGAIIVYGLINEQEA   74 (346)
T ss_dssp             -CCEE-EECTT------SHHHHHHHH---HHHHTTCCEEEEECSSCCCHHHHH-HHHHHHH----TTCEEEECCTTCHHH
T ss_pred             CCeEE-EECCC------cHHHHHHHH---HHHHCCCCEEEEECCCCCChhHHH-HHHHHHh----CCcEEEEeecCCHHH
Confidence            46777 99999      999999955   4555565554  4754    3433 2333432    378899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYS  177 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~  177 (292)
                      +.+++++.     .+|+|||+||..                 |+.++..+++++..    .+ .  .++|+ |+..... 
T Consensus        75 l~~~~~~~-----~~d~Vi~~a~~~-----------------n~~~~~~l~~aa~~----~g~v--~~~v~-S~~g~~~-  124 (346)
T 3i6i_A           75 MEKILKEH-----EIDIVVSTVGGE-----------------SILDQIALVKAMKA----VGTI--KRFLP-SEFGHDV-  124 (346)
T ss_dssp             HHHHHHHT-----TCCEEEECCCGG-----------------GGGGHHHHHHHHHH----HCCC--SEEEC-SCCSSCT-
T ss_pred             HHHHHhhC-----CCCEEEECCchh-----------------hHHHHHHHHHHHHH----cCCc--eEEee-cccCCCC-
Confidence            88887653     599999999962                 77777777776643    23 3  57775 3221110 


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                             +       +.....+...|+.+|.+++.+.+.       .|+.++.+.||++. .+
T Consensus       125 -------~-------e~~~~~p~~~y~~sK~~~e~~l~~-------~g~~~tivrpg~~~g~~  166 (346)
T 3i6i_A          125 -------N-------RADPVEPGLNMYREKRRVRQLVEE-------SGIPFTYICCNSIASWP  166 (346)
T ss_dssp             -------T-------TCCCCTTHHHHHHHHHHHHHHHHH-------TTCCBEEEECCEESSCC
T ss_pred             -------C-------ccCcCCCcchHHHHHHHHHHHHHH-------cCCCEEEEEeccccccc
Confidence                   0       011223667899999998877764       37999999999887 44

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.27  E-value=8.3e-11  Score=101.87  Aligned_cols=149  Identities=10%  Similarity=0.007  Sum_probs=94.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCH-------HHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCW-------DKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~-------~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      +++++ ||||+      ++||..++   .+|.+.|+.|+  .|+.       ++.+.. +++..    ..+.++++|++|
T Consensus         2 ~~~vl-VtGat------G~iG~~l~---~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~----~~v~~v~~D~~d   66 (307)
T 2gas_A            2 ENKIL-ILGPT------GAIGRHIV---WASIKAGNPTYALVRKTITAANPETKEELI-DNYQS----LGVILLEGDIND   66 (307)
T ss_dssp             CCCEE-EESTT------STTHHHHH---HHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHH----TTCEEEECCTTC
T ss_pred             CcEEE-EECCC------chHHHHHH---HHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHh----CCCEEEEeCCCC
Confidence            46777 99999      99999994   44555665554  4765       554432 34432    257889999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESH  174 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~  174 (292)
                      .+++.++++       .+|+|||+||...                 +.+...++++    +.+.+ .  .|+|.  |..+
T Consensus        67 ~~~l~~~~~-------~~d~vi~~a~~~~-----------------~~~~~~l~~a----a~~~g~v--~~~v~--S~~g  114 (307)
T 2gas_A           67 HETLVKAIK-------QVDIVICAAGRLL-----------------IEDQVKIIKA----IKEAGNV--KKFFP--SEFG  114 (307)
T ss_dssp             HHHHHHHHT-------TCSEEEECSSSSC-----------------GGGHHHHHHH----HHHHCCC--SEEEC--SCCS
T ss_pred             HHHHHHHHh-------CCCEEEECCcccc-----------------cccHHHHHHH----HHhcCCc--eEEee--cccc
Confidence            988877654       4899999999642                 2233344444    44443 4  68873  3322


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~  241 (292)
                      ....       ..      ....+....| .+|.+++.+.+.       .|++++.+.||++. ++..
T Consensus       115 ~~~~-------~~------~~~~p~~~~y-~sK~~~e~~~~~-------~~i~~~~lrp~~~~~~~~~  161 (307)
T 2gas_A          115 LDVD-------RH------DAVEPVRQVF-EEKASIRRVIEA-------EGVPYTYLCCHAFTGYFLR  161 (307)
T ss_dssp             SCTT-------SC------CCCTTHHHHH-HHHHHHHHHHHH-------HTCCBEEEECCEETTTTGG
T ss_pred             cCcc-------cc------cCCCcchhHH-HHHHHHHHHHHH-------cCCCeEEEEcceeeccccc
Confidence            1100       00      0001135689 999998877653       26889999999888 6543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.21  E-value=3.2e-11  Score=106.99  Aligned_cols=166  Identities=6%  Similarity=-0.126  Sum_probs=106.5

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-----cEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-----KLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-----~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      |++++ ||||+      +.||..+   +.+|.++|     +.|++  |+.....         ....++.++++|++|.+
T Consensus         1 ~~~vl-VtGat------G~iG~~l---~~~L~~~g~~~~~~~V~~~~r~~~~~~---------~~~~~~~~~~~Dl~d~~   61 (364)
T 2v6g_A            1 SSVAL-IVGVT------GIIGNSL---AEILPLADTPGGPWKVYGVARRTRPAW---------HEDNPINYVQCDISDPD   61 (364)
T ss_dssp             CEEEE-EETTT------SHHHHHH---HHHTTSTTCTTCSEEEEEEESSCCCSC---------CCSSCCEEEECCTTSHH
T ss_pred             CCEEE-EECCC------cHHHHHH---HHHHHhCCCCCCceEEEEEeCCCCccc---------cccCceEEEEeecCCHH
Confidence            46777 99999      9999999   66677778     67664  5533221         11347889999999998


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEE-------EEc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVV-------VVS  170 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV-------~vs  170 (292)
                      ++.++++.+    +++|+|||+||...       ++.+..+++|+.++..+++++.+...  ..  .++|       ++|
T Consensus        62 ~~~~~~~~~----~~~d~vih~a~~~~-------~~~~~~~~~n~~~~~~l~~a~~~~~~--~~--~~~v~~~g~~i~~S  126 (364)
T 2v6g_A           62 DSQAKLSPL----TDVTHVFYVTWANR-------STEQENCEANSKMFRNVLDAVIPNCP--NL--KHISLQTGRKHYMG  126 (364)
T ss_dssp             HHHHHHTTC----TTCCEEEECCCCCC-------SSHHHHHHHHHHHHHHHHHHHTTTCT--TC--CEEEEECCTHHHHC
T ss_pred             HHHHHHhcC----CCCCEEEECCCCCc-------chHHHHHHHhHHHHHHHHHHHHHhcc--cc--ceEEeccCceEEEe
Confidence            877765432    35999999999752       35678999999999999998764311  22  5777       677


Q ss_pred             CcccccccCC-CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCC-eEEEEecCCccc
Q psy4251         171 SESHRYSYIT-KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYK-IALSSRHCCWKI  237 (292)
Q Consensus       171 S~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~g-i~v~~v~PG~v~  237 (292)
                      |...+..... ...++.+....      +....|.    +.+.+++.++++   .| +++..+.||.+-
T Consensus       127 s~~vyg~~~~~~~~~~E~~~~~------~~~~~y~----~~E~~~~~~~~~---~~~~~~~ilRp~~v~  182 (364)
T 2v6g_A          127 PFESYGKIESHDPPYTEDLPRL------KYMNFYY----DLEDIMLEEVEK---KEGLTWSVHRPGNIF  182 (364)
T ss_dssp             CGGGTTTSCCCCSSBCTTSCCC------SSCCHHH----HHHHHHHHHHTT---STTCEEEEEEESSEE
T ss_pred             chhhccccccCCCCCCccccCC------ccchhhH----HHHHHHHHHhhc---CCCceEEEECCCcee
Confidence            7654322100 00111111110      1133452    244444444432   35 999999999988

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.20  E-value=1.1e-10  Score=100.19  Aligned_cols=146  Identities=8%  Similarity=-0.083  Sum_probs=99.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||       +.||..+   +.+|.++|+.|++  |+.++....    ..    ..+.++++|++|.+      
T Consensus         6 ~~il-VtGa-------G~iG~~l---~~~L~~~g~~V~~~~r~~~~~~~~----~~----~~~~~~~~D~~d~~------   60 (286)
T 3ius_A            6 GTLL-SFGH-------GYTARVL---SRALAPQGWRIIGTSRNPDQMEAI----RA----SGAEPLLWPGEEPS------   60 (286)
T ss_dssp             CEEE-EETC-------CHHHHHH---HHHHGGGTCEEEEEESCGGGHHHH----HH----TTEEEEESSSSCCC------
T ss_pred             CcEE-EECC-------cHHHHHH---HHHHHHCCCEEEEEEcChhhhhhH----hh----CCCeEEEecccccc------
Confidence            5777 9995       8999999   6667788887764  776554332    22    36889999999933      


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh--cCCCCcEEEEEcCcccccccCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK--GAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~--~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                            ...+|+|||+|+.....     +.              .++.++..+.+  .+.  .++|++||...+.... .
T Consensus        61 ------~~~~d~vi~~a~~~~~~-----~~--------------~~~~l~~a~~~~~~~~--~~~v~~Ss~~vyg~~~-~  112 (286)
T 3ius_A           61 ------LDGVTHLLISTAPDSGG-----DP--------------VLAALGDQIAARAAQF--RWVGYLSTTAVYGDHD-G  112 (286)
T ss_dssp             ------CTTCCEEEECCCCBTTB-----CH--------------HHHHHHHHHHHTGGGC--SEEEEEEEGGGGCCCT-T
T ss_pred             ------cCCCCEEEECCCccccc-----cH--------------HHHHHHHHHHhhcCCc--eEEEEeecceecCCCC-C
Confidence                  45799999999975321     11              12444555554  344  7999999976553321 1


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..++.       .....+...|+.+|.+.+.+++.+      .|++++.+.||.+-
T Consensus       113 ~~~~E-------~~~~~p~~~Y~~sK~~~E~~~~~~------~~~~~~ilRp~~v~  155 (286)
T 3ius_A          113 AWVDE-------TTPLTPTAARGRWRVMAEQQWQAV------PNLPLHVFRLAGIY  155 (286)
T ss_dssp             CEECT-------TSCCCCCSHHHHHHHHHHHHHHHS------TTCCEEEEEECEEE
T ss_pred             CCcCC-------CCCCCCCCHHHHHHHHHHHHHHhh------cCCCEEEEeccceE
Confidence            01111       122235678999999999888876      47999999999987

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.16  E-value=1.1e-10  Score=100.46  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      +++ |||||      ++||..+++.   |.+. |..|+  .|+.++...    +.    ...+.++++|++|++++.+++
T Consensus         2 ~il-VtGat------G~iG~~l~~~---L~~~~g~~V~~~~R~~~~~~~----~~----~~~v~~~~~D~~d~~~l~~~~   63 (289)
T 3e48_A            2 NIM-LTGAT------GHLGTHITNQ---AIANHIDHFHIGVRNVEKVPD----DW----RGKVSVRQLDYFNQESMVEAF   63 (289)
T ss_dssp             CEE-EETTT------SHHHHHHHHH---HHHTTCTTEEEEESSGGGSCG----GG----BTTBEEEECCTTCHHHHHHHT
T ss_pred             EEE-EEcCC------chHHHHHHHH---HhhCCCCcEEEEECCHHHHHH----hh----hCCCEEEEcCCCCHHHHHHHH
Confidence            466 99999      9999999554   5554 55544  587655332    11    347899999999998877764


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                             ..+|+|||+||....            ...|+.++    +.+++.+++.+.  .+||++||..
T Consensus        64 -------~~~d~vi~~a~~~~~------------~~~~~~~~----~~l~~aa~~~gv--~~iv~~Ss~~  108 (289)
T 3e48_A           64 -------KGMDTVVFIPSIIHP------------SFKRIPEV----ENLVYAAKQSGV--AHIIFIGYYA  108 (289)
T ss_dssp             -------TTCSEEEECCCCCCS------------HHHHHHHH----HHHHHHHHHTTC--CEEEEEEESC
T ss_pred             -------hCCCEEEEeCCCCcc------------chhhHHHH----HHHHHHHHHcCC--CEEEEEcccC
Confidence                   368999999996421            12244444    455555555555  7999999954

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.15  E-value=2.9e-10  Score=99.16  Aligned_cols=146  Identities=8%  Similarity=-0.079  Sum_probs=92.1

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCH------HHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCW------DKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~------~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      .++++ ||||+      ++||..+   +.+|.+.|+.|.  .|+.      ++.+ ..+++..    ..+.++++|++|.
T Consensus         4 ~~~il-VtGat------G~iG~~l---~~~L~~~g~~V~~~~R~~~~~~~~~~~~-~l~~~~~----~~v~~v~~D~~d~   68 (321)
T 3c1o_A            4 MEKII-IYGGT------GYIGKFM---VRASLSFSHPTFIYARPLTPDSTPSSVQ-LREEFRS----MGVTIIEGEMEEH   68 (321)
T ss_dssp             CCCEE-EETTT------STTHHHH---HHHHHHTTCCEEEEECCCCTTCCHHHHH-HHHHHHH----TTCEEEECCTTCH
T ss_pred             ccEEE-EEcCC------chhHHHH---HHHHHhCCCcEEEEECCcccccChHHHH-HHHHhhc----CCcEEEEecCCCH
Confidence            35677 99999      9999999   555556666554  4764      2332 2233332    3588899999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      +++.++++       .+|+|||+||...                 +.+.    +.+++.+.+.+ .  .|||  .|..+.
T Consensus        69 ~~l~~a~~-------~~d~vi~~a~~~~-----------------~~~~----~~l~~aa~~~g~v--~~~v--~S~~g~  116 (321)
T 3c1o_A           69 EKMVSVLK-------QVDIVISALPFPM-----------------ISSQ----IHIINAIKAAGNI--KRFL--PSDFGC  116 (321)
T ss_dssp             HHHHHHHT-------TCSEEEECCCGGG-----------------SGGG----HHHHHHHHHHCCC--CEEE--CSCCSS
T ss_pred             HHHHHHHc-------CCCEEEECCCccc-----------------hhhH----HHHHHHHHHhCCc--cEEe--cccccc
Confidence            88877754       3899999999642                 2223    34444444444 4  6887  233221


Q ss_pred             cccCCCCCCCccccCcCCCCCCh-hhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFW-AMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                      ...              ...... ....| .+|.+++.+.+.       .|++++.+.||++. ++
T Consensus       117 ~~~--------------~~~~~~p~~~~y-~sK~~~e~~~~~-------~~~~~~~lrp~~~~~~~  160 (321)
T 3c1o_A          117 EED--------------RIKPLPPFESVL-EKKRIIRRAIEA-------AALPYTYVSANCFGAYF  160 (321)
T ss_dssp             CGG--------------GCCCCHHHHHHH-HHHHHHHHHHHH-------HTCCBEEEECCEEHHHH
T ss_pred             Ccc--------------ccccCCCcchHH-HHHHHHHHHHHH-------cCCCeEEEEeceecccc
Confidence            100              001111 25689 999999887753       25788889999887 44

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.14  E-value=1.7e-10  Score=107.45  Aligned_cols=160  Identities=11%  Similarity=-0.082  Sum_probs=104.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +++++ ||||+      +.||..+   +..|.+.|+.|++  |+..+.                ..+.+|+.+..     
T Consensus       147 ~m~VL-VTGat------G~IG~~l---~~~L~~~G~~V~~l~R~~~~~----------------~~v~~d~~~~~-----  195 (516)
T 3oh8_A          147 PLTVA-ITGSR------GLVGRAL---TAQLQTGGHEVIQLVRKEPKP----------------GKRFWDPLNPA-----  195 (516)
T ss_dssp             CCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESSSCCT----------------TCEECCTTSCC-----
T ss_pred             CCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCCCCc----------------cceeecccchh-----
Confidence            67888 99999      9999999   6667777887764  653321                12677886431     


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                          .+.+..+|+|||+||..... ..+.+..+..+++|+.++..+++++.   .+.+.  .+||++||...+.......
T Consensus       196 ----~~~l~~~D~Vih~A~~~~~~-~~~~~~~~~~~~~Nv~gt~~ll~a~a---~~~~~--~r~V~~SS~~vyg~~~~~~  265 (516)
T 3oh8_A          196 ----SDLLDGADVLVHLAGEPIFG-RFNDSHKEAIRESRVLPTKFLAELVA---ESTQC--TTMISASAVGFYGHDRGDE  265 (516)
T ss_dssp             ----TTTTTTCSEEEECCCC------CCGGGHHHHHHHTHHHHHHHHHHHH---HCSSC--CEEEEEEEGGGGCSEEEEE
T ss_pred             ----HHhcCCCCEEEECCCCcccc-ccchhHHHHHHHHHHHHHHHHHHHHH---hcCCC--CEEEEeCcceEecCCCCCC
Confidence                22345799999999975322 34566778899999999999999743   23344  7999999976553110000


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                           .+..  .... +...|+.+|...+.+...    ....|++++.+.||.+-
T Consensus       266 -----~~~E--~~~~-~~~~y~~~~~~~E~~~~~----~~~~gi~~~ilRp~~v~  308 (516)
T 3oh8_A          266 -----ILTE--ESES-GDDFLAEVCRDWEHATAP----ASDAGKRVAFIRTGVAL  308 (516)
T ss_dssp             -----EECT--TSCC-CSSHHHHHHHHHHHTTHH----HHHTTCEEEEEEECEEE
T ss_pred             -----ccCC--CCCC-CcChHHHHHHHHHHHHHH----HHhCCCCEEEEEeeEEE
Confidence                 0001  1111 455688888876655433    23348999999999998

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.12  E-value=2.4e-10  Score=99.62  Aligned_cols=146  Identities=8%  Similarity=-0.025  Sum_probs=91.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ ||||+      ++||..+   +.+|.+.|+.|+  .|+.+...+..+++..    ..+.++++|++|.+++.+++
T Consensus        12 ~~il-VtGat------G~iG~~l---~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~----~~v~~v~~Dl~d~~~l~~a~   77 (318)
T 2r6j_A           12 SKIL-IFGGT------GYIGNHM---VKGSLKLGHPTYVFTRPNSSKTTLLDEFQS----LGAIIVKGELDEHEKLVELM   77 (318)
T ss_dssp             CCEE-EETTT------STTHHHH---HHHHHHTTCCEEEEECTTCSCHHHHHHHHH----TTCEEEECCTTCHHHHHHHH
T ss_pred             CeEE-EECCC------chHHHHH---HHHHHHCCCcEEEEECCCCchhhHHHHhhc----CCCEEEEecCCCHHHHHHHH
Confidence            4677 99999      9999999   555556666654  4765311222233332    25788999999998887775


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccccCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      +       .+|+|||+++...                 +.+.    +.+++.+++.+ .  .+||+ |+ .+....    
T Consensus        78 ~-------~~d~vi~~a~~~~-----------------~~~~----~~l~~aa~~~g~v--~~~v~-S~-~g~~~~----  121 (318)
T 2r6j_A           78 K-------KVDVVISALAFPQ-----------------ILDQ----FKILEAIKVAGNI--KRFLP-SD-FGVEED----  121 (318)
T ss_dssp             T-------TCSEEEECCCGGG-----------------STTH----HHHHHHHHHHCCC--CEEEC-SC-CSSCTT----
T ss_pred             c-------CCCEEEECCchhh-----------------hHHH----HHHHHHHHhcCCC--CEEEe-ec-cccCcc----
Confidence            4       4899999998642                 2223    33444444444 4  68874 32 221100    


Q ss_pred             CCCccccCcCCCCCCh-hhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cc
Q psy4251         183 TISKSVLSVENYSDFW-AMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TV  239 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~-~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~  239 (292)
                                ...... ....| .+|.+++.+.+.       .|+.++.+.||++. .+
T Consensus       122 ----------~~~~~~p~~~~y-~sK~~~e~~~~~-------~~~~~~~lr~~~~~~~~  162 (318)
T 2r6j_A          122 ----------RINALPPFEALI-ERKRMIRRAIEE-------ANIPYTYVSANCFASYF  162 (318)
T ss_dssp             ----------TCCCCHHHHHHH-HHHHHHHHHHHH-------TTCCBEEEECCEEHHHH
T ss_pred             ----------cccCCCCcchhH-HHHHHHHHHHHh-------cCCCeEEEEcceehhhh
Confidence                      001111 24678 999998877653       36888899999877 44

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.10  E-value=1.1e-09  Score=94.72  Aligned_cols=145  Identities=8%  Similarity=-0.021  Sum_probs=90.8

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcC------HHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNC------WDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~------~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      .++++ ||||+      ++||..+   +.+|.+.|+.|+  .|+      .++.+. .+++.    ...+.++++|++|.
T Consensus         4 ~~~il-VtGat------G~iG~~l---~~~L~~~g~~V~~l~R~~~~~~~~~~~~~-~~~l~----~~~v~~v~~D~~d~   68 (308)
T 1qyc_A            4 RSRIL-LIGAT------GYIGRHV---AKASLDLGHPTFLLVRESTASSNSEKAQL-LESFK----ASGANIVHGSIDDH   68 (308)
T ss_dssp             CCCEE-EESTT------STTHHHH---HHHHHHTTCCEEEECCCCCTTTTHHHHHH-HHHHH----TTTCEEECCCTTCH
T ss_pred             CCEEE-EEcCC------cHHHHHH---HHHHHhCCCCEEEEECCcccccCHHHHHH-HHHHH----hCCCEEEEeccCCH
Confidence            45677 99999      9999999   555666676655  465      333322 23332    23688899999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHR  175 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~  175 (292)
                      +++.++++       .+|+|||+||...                 +.+...    +++.+++.+ .  .|||+ |+. +.
T Consensus        69 ~~l~~~~~-------~~d~vi~~a~~~~-----------------~~~~~~----l~~aa~~~g~v--~~~v~-S~~-g~  116 (308)
T 1qyc_A           69 ASLVEAVK-------NVDVVISTVGSLQ-----------------IESQVN----IIKAIKEVGTV--KRFFP-SEF-GN  116 (308)
T ss_dssp             HHHHHHHH-------TCSEEEECCCGGG-----------------SGGGHH----HHHHHHHHCCC--SEEEC-SCC-SS
T ss_pred             HHHHHHHc-------CCCEEEECCcchh-----------------hhhHHH----HHHHHHhcCCC--ceEee-ccc-cc
Confidence            88877754       3899999998642                 222333    344444444 4  68873 332 21


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ...      ......+       ....| .+|.+++.+.+.       .|++++.+.||++.
T Consensus       117 ~~~------~~~~~~p-------~~~~y-~sK~~~e~~~~~-------~~~~~~~~r~~~~~  157 (308)
T 1qyc_A          117 DVD------NVHAVEP-------AKSVF-EVKAKVRRAIEA-------EGIPYTYVSSNCFA  157 (308)
T ss_dssp             CTT------SCCCCTT-------HHHHH-HHHHHHHHHHHH-------HTCCBEEEECCEEH
T ss_pred             Ccc------ccccCCc-------chhHH-HHHHHHHHHHHh-------cCCCeEEEEeceec
Confidence            100      0000111       35678 999998877653       25788889999887

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.08  E-value=1.5e-09  Score=94.16  Aligned_cols=153  Identities=11%  Similarity=-0.030  Sum_probs=96.5

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcC-----HHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNC-----WDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~-----~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++++ |||||      ++||..+   +.+|.+.|+.|+  .|+     .++.+.. +++.    ...+.++++|++|.+
T Consensus         4 ~~~il-VtGat------G~iG~~l---~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-~~~~----~~~~~~~~~D~~d~~   68 (313)
T 1qyd_A            4 KSRVL-IVGGT------GYIGKRI---VNASISLGHPTYVLFRPEVVSNIDKVQML-LYFK----QLGAKLIEASLDDHQ   68 (313)
T ss_dssp             CCCEE-EESTT------STTHHHH---HHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHH----TTTCEEECCCSSCHH
T ss_pred             CCEEE-EEcCC------cHHHHHH---HHHHHhCCCcEEEEECCCcccchhHHHHH-HHHH----hCCeEEEeCCCCCHH
Confidence            35677 99999      9999999   555656676665  376     3444332 2332    236888999999998


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRY  176 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~  176 (292)
                      ++.++++       .+|+|||++|.....             .|+.++..+++++    ++.+ .  .|||+  |..+..
T Consensus        69 ~l~~~~~-------~~d~vi~~a~~~~~~-------------~~~~~~~~l~~aa----~~~g~v--~~~v~--S~~g~~  120 (313)
T 1qyd_A           69 RLVDALK-------QVDVVISALAGGVLS-------------HHILEQLKLVEAI----KEAGNI--KRFLP--SEFGMD  120 (313)
T ss_dssp             HHHHHHT-------TCSEEEECCCCSSSS-------------TTTTTHHHHHHHH----HHSCCC--SEEEC--SCCSSC
T ss_pred             HHHHHHh-------CCCEEEECCccccch-------------hhHHHHHHHHHHH----HhcCCC--ceEEe--cCCcCC
Confidence            8877654       489999999975321             2555555555544    4444 4  68874  322211


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVS  240 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~  240 (292)
                      ..    .+ .....+       ....| .+|.+++.+.+.       .|++++.+.||++. ++.
T Consensus       121 ~~----~~-~~~~~p-------~~~~y-~sK~~~e~~~~~-------~g~~~~ilrp~~~~~~~~  165 (313)
T 1qyd_A          121 PD----IM-EHALQP-------GSITF-IDKRKVRRAIEA-------ASIPYTYVSSNMFAGYFA  165 (313)
T ss_dssp             TT----SC-CCCCSS-------TTHHH-HHHHHHHHHHHH-------TTCCBCEEECCEEHHHHT
T ss_pred             cc----cc-ccCCCC-------CcchH-HHHHHHHHHHHh-------cCCCeEEEEeceeccccc
Confidence            10    00 000111       35678 999998877652       36888999999887 543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.02  E-value=2.1e-10  Score=98.89  Aligned_cols=106  Identities=9%  Similarity=-0.001  Sum_probs=78.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||+++ ||||+      +|||+++   +..|+..|+.|+  .|+.+++++..+++...   ..+.++.+|+++.++
T Consensus       115 ~~l~gk~vl-VtGaa------GGiG~ai---a~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~---~~~~~~~~D~~~~~~  181 (287)
T 1lu9_A          115 GSVKGKKAV-VLAGT------GPVGMRS---AALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDAS  181 (287)
T ss_dssp             SCCTTCEEE-EETCS------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHH
T ss_pred             cCCCCCEEE-EECCC------cHHHHHH---HHHHHHCcCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEecCCCHHH
Confidence            457899999 99999      9999999   555556665544  59999998888888653   135678899999988


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCC-cchhhhhhhhhhHHH
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTE-DGFETTFQVNHLAHF  146 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~-~~~~~~~~vN~~~~~  146 (292)
                      +.++++       .+|+||||+|+..   +..+.+. ++++..+++|+.+++
T Consensus       182 ~~~~~~-------~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~  226 (287)
T 1lu9_A          182 RAEAVK-------GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL  226 (287)
T ss_dssp             HHHHTT-------TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred             HHHHHH-------hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence            776643       3799999998642   1123343 677788889988876

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=98.56  E-value=5.9e-08  Score=85.00  Aligned_cols=168  Identities=12%  Similarity=-0.000  Sum_probs=101.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-------EEEE--cCH--HHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-------LFYQ--NCW--DKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-------~v~~--r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      .+++ ||||+      +.||..+   +..|...|.       .|..  ++.  ++.+....++.+.  ...+  + .|+.
T Consensus         5 mkVl-VtGaa------GfIG~~l---~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~--~~~~--~-~di~   69 (327)
T 1y7t_A            5 VRVA-VTGAA------GQIGYSL---LFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC--AFPL--L-AGLE   69 (327)
T ss_dssp             EEEE-ESSTT------SHHHHHH---HHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--TCTT--E-EEEE
T ss_pred             CEEE-EECCC------CHHHHHH---HHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcc--cccc--c-CCeE
Confidence            4577 99999      9999999   555666664       4543  332  3344434455432  1122  2 4666


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +.++..+.       +...|+|||.||.....    .+.....+++|+.++..+++++...-  ...  .+++++|+...
T Consensus        70 ~~~~~~~a-------~~~~D~Vih~Ag~~~~~----~~~~~~~~~~Nv~~t~~l~~a~~~~~--~~~--~~vvv~snp~~  134 (327)
T 1y7t_A           70 ATDDPKVA-------FKDADYALLVGAAPRKA----GMERRDLLQVNGKIFTEQGRALAEVA--KKD--VKVLVVGNPAN  134 (327)
T ss_dssp             EESCHHHH-------TTTCSEEEECCCCCCCT----TCCHHHHHHHHHHHHHHHHHHHHHHS--CTT--CEEEECSSSHH
T ss_pred             eccChHHH-------hCCCCEEEECCCcCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhc--CCC--eEEEEeCCchh
Confidence            54444333       23589999999986432    13346689999999999988876531  123  68888888652


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCcc
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWK  236 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v  236 (292)
                      .....     .     .+....+++...|+.+|...+.+...+++.+.   +.+..++|..|
T Consensus       135 ~~~~~-----~-----~~~~~~~~p~~~yg~tkl~~er~~~~~a~~~g---~~~~~vr~~~V  183 (327)
T 1y7t_A          135 TNALI-----A-----YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTG---TGVDRIRRMTV  183 (327)
T ss_dssp             HHHHH-----H-----HHTCTTSCGGGEEECCHHHHHHHHHHHHHHHT---CCGGGEECCEE
T ss_pred             hhHHH-----H-----HHHcCCCChhheeccchHHHHHHHHHHHHHhC---cChhheeeeEE
Confidence            21110     0     00000233556799999999999988888763   44444444443

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.46  E-value=1.5e-07  Score=77.34  Aligned_cols=77  Identities=9%  Similarity=-0.015  Sum_probs=54.4

Q ss_pred             CCCCCceEEEEcCC----------------CCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCC
Q psy4251          21 STYNGCLAILCTGD----------------MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKP   82 (292)
Q Consensus        21 ~~l~g~~~vlItGa----------------~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~   82 (292)
                      .+|+||+++ ||||                +      +|||+++   +.+++.+|+.|+.  ++. .++         .+
T Consensus         4 ~~l~gk~vl-VTgG~T~E~iDpVR~itN~SS------g~iG~ai---A~~~~~~Ga~V~l~~~~~-~l~---------~~   63 (226)
T 1u7z_A            4 NDLKHLNIM-ITAGPTREPLDPVRYISDHSS------GKMGFAI---AAAAARRGANVTLVSGPV-SLP---------TP   63 (226)
T ss_dssp             CTTTTCEEE-EEESBCEEESSSSEEEEECCC------SHHHHHH---HHHHHHTTCEEEEEECSC-CCC---------CC
T ss_pred             cCCCCCEEE-EECCCCCcccCceeeccCCCc------cHHHHHH---HHHHHHCCCEEEEEECCc-ccc---------cC
Confidence            468999999 9999                6      8899999   5667778877753  432 110         11


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      . .+  -.+|+++.   .++.+.+.+.++++|++|||||+.
T Consensus        64 ~-g~--~~~dv~~~---~~~~~~v~~~~~~~Dili~~Aav~   98 (226)
T 1u7z_A           64 P-FV--KRVDVMTA---LEMEAAVNASVQQQNIFIGCAAVA   98 (226)
T ss_dssp             T-TE--EEEECCSH---HHHHHHHHHHGGGCSEEEECCBCC
T ss_pred             C-CC--eEEccCcH---HHHHHHHHHhcCCCCEEEECCccc
Confidence            1 12  24677775   446666777788999999999986

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=98.35  E-value=3.1e-07  Score=71.60  Aligned_cols=76  Identities=11%  Similarity=0.018  Sum_probs=58.0

Q ss_pred             ccchhhHHHHHHHHhhcCcEEEE--cCHHHHH---HHHHHHHhhCCCCceEEEEccCCCh--HHHHHHHHHHHHhCCCcc
Q psy4251          42 TGLKKKDGNLCFDLVQSSKLFYQ--NCWDKAN---DAISKILTEKPSAQCIAMELDLCRL--KSVKKFAEEYQKKFRSLN  114 (292)
Q Consensus        42 ~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~---~~~~~l~~~~~~~~~~~~~~Dls~~--~~v~~~~~~~~~~~~~id  114 (292)
                      +-++.++   +..|++.|+.+++  |+.+...   +..+.+.+.  +.++..+++|++++  ++++++++.+.+++|+ |
T Consensus        26 ~~p~~a~---a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~--G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-d   99 (157)
T 3gxh_A           26 GLPNEQQ---FSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA--GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-D   99 (157)
T ss_dssp             BCCCHHH---HHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT--TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-C
T ss_pred             CCCCHHH---HHHHHHcCCCEEEECCCcccccccccHHHHHHHc--CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-C
Confidence            4468888   6677788887764  5433221   234445444  67889999999999  9999999999998999 9


Q ss_pred             EEEEccccc
Q psy4251         115 ILVLNAGVF  123 (292)
Q Consensus       115 ~lI~nAg~~  123 (292)
                      +||||||..
T Consensus       100 VLVnnAgg~  108 (157)
T 3gxh_A          100 VLVHCLANY  108 (157)
T ss_dssp             EEEECSBSH
T ss_pred             EEEECCCCC
Confidence            999999963

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.21  E-value=5.7e-06  Score=74.45  Aligned_cols=81  Identities=10%  Similarity=0.086  Sum_probs=63.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-----cEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-----KLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-----~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++++ |+|+       +|||.++++   .|++.+     +.++.|+.+++++..+++.... +.++..+++|+++.++++
T Consensus         2 ~kVl-IiGa-------GgiG~~ia~---~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~   69 (405)
T 4ina_A            2 AKVL-QIGA-------GGVGGVVAH---KMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELV   69 (405)
T ss_dssp             CEEE-EECC-------SHHHHHHHH---HHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHH
T ss_pred             CEEE-EECC-------CHHHHHHHH---HHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHH
Confidence            3566 7888       799999954   455555     3344699999999998886543 246889999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      +++++.     ++|+||||+|..
T Consensus        70 ~~l~~~-----~~DvVin~ag~~   87 (405)
T 4ina_A           70 ALINEV-----KPQIVLNIALPY   87 (405)
T ss_dssp             HHHHHH-----CCSEEEECSCGG
T ss_pred             HHHHhh-----CCCEEEECCCcc
Confidence            998876     589999999853

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.19  E-value=4e-06  Score=71.98  Aligned_cols=156  Identities=9%  Similarity=-0.128  Sum_probs=87.4

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ |||||      +=||..+   +.+|.++|+.|.+  |+..              ...+   ..|     .   +  
T Consensus         2 kIL-VTGat------GfIG~~L---~~~L~~~G~~V~~l~R~~~--------------~~~~---~~~-----~---~--   44 (298)
T 4b4o_A            2 RVL-VGGGT------GFIGTAL---TQLLNARGHEVTLVSRKPG--------------PGRI---TWD-----E---L--   44 (298)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCC--------------TTEE---EHH-----H---H--
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCCC--------------cCee---ecc-----h---h--
Confidence            366 99999      7788888   7778888988875  5421              1121   111     1   1  


Q ss_pred             HHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                       ..+....+|++||.||..  .+....+.+..+..+.+|+.++..+.+.+.    +.+.+..++|+.||...+... ...
T Consensus        45 -~~~~l~~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~----~~~~~~~~~i~~Ss~~vyg~~-~~~  118 (298)
T 4b4o_A           45 -AASGLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAIT----KAPQPPKAWVLVTGVAYYQPS-LTA  118 (298)
T ss_dssp             -HHHCCCSCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHH----HCSSCCSEEEEEEEGGGSCCC-SSC
T ss_pred             -hHhhccCCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHH----HhCCCceEEEEEeeeeeecCC-CCC
Confidence             112346799999999853  223333555556677788877766665543    222211456666666544322 111


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ....+       ....+...|+..|...+.     +......++++..+.||.|-
T Consensus       119 ~~~E~-------~p~~~~~~~~~~~~~~e~-----~~~~~~~~~~~~~~r~~~v~  161 (298)
T 4b4o_A          119 EYDED-------SPGGDFDFFSNLVTKWEA-----AARLPGDSTRQVVVRSGVVL  161 (298)
T ss_dssp             CBCTT-------CCCSCSSHHHHHHHHHHH-----HHCCSSSSSEEEEEEECEEE
T ss_pred             ccccc-------CCccccchhHHHHHHHHH-----HHHhhccCCceeeeeeeeEE
Confidence            11111       112233445555544332     22234568999999999887

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=97.97  E-value=1.7e-05  Score=65.29  Aligned_cols=76  Identities=14%  Similarity=0.116  Sum_probs=49.8

Q ss_pred             CCceEEEEcCC----------------CCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCc
Q psy4251          24 NGCLAILCTGD----------------MEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQ   85 (292)
Q Consensus        24 ~g~~~vlItGa----------------~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~   85 (292)
                      +||+++ ||||                +      +++|+++   +.++..+|+.|+.  |... +.       ...+ ..
T Consensus         2 ~gk~vl-VTgG~T~E~IDpVR~ItN~SS------G~mG~ai---A~~~~~~Ga~V~lv~~~~~-~~-------~~~~-~~   62 (232)
T 2gk4_A            2 NAMKIL-VTSGGTSEAIDSVRSITNHST------GHLGKII---TETLLSAGYEVCLITTKRA-LK-------PEPH-PN   62 (232)
T ss_dssp             -CCEEE-EECSBCEEESSSSEEEEECCC------CHHHHHH---HHHHHHTTCEEEEEECTTS-CC-------CCCC-TT
T ss_pred             CCCEEE-EeCCCcccccCceeeccCCCC------CHHHHHH---HHHHHHCCCEEEEEeCCcc-cc-------ccCC-CC
Confidence            588999 9999                6      7799999   5556677777653  4421 10       0001 12


Q ss_pred             eEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          86 CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        86 ~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      +     |+.+.+++.++.+.+.+.++++|++|+|||+.
T Consensus        63 ~-----~~~~v~s~~em~~~v~~~~~~~Dili~aAAvs   95 (232)
T 2gk4_A           63 L-----SIREITNTKDLLIEMQERVQDYQVLIHSMAVS   95 (232)
T ss_dssp             E-----EEEECCSHHHHHHHHHHHGGGCSEEEECSBCC
T ss_pred             e-----EEEEHhHHHHHHHHHHHhcCCCCEEEEcCccc
Confidence            3     23333466677777777788999999999975

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.97  E-value=2.3e-05  Score=63.09  Aligned_cols=101  Identities=8%  Similarity=-0.029  Sum_probs=62.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ ||||+      +|||.++++.+.   ..|+.|+  .++.++.+.+    ++.  +...   .+|.++.+..+.
T Consensus        38 ~g~~vl-V~Ga~------ggiG~~~~~~~~---~~G~~V~~~~~~~~~~~~~----~~~--g~~~---~~d~~~~~~~~~   98 (198)
T 1pqw_A           38 PGERVL-IHSAT------GGVGMAAVSIAK---MIGARIYTTAGSDAKREML----SRL--GVEY---VGDSRSVDFADE   98 (198)
T ss_dssp             TTCEEE-ETTTT------SHHHHHHHHHHH---HHTCEEEEEESSHHHHHHH----HTT--CCSE---EEETTCSTHHHH
T ss_pred             CCCEEE-EeeCC------ChHHHHHHHHHH---HcCCEEEEEeCCHHHHHHH----HHc--CCCE---EeeCCcHHHHHH
Confidence            478888 99999      999999966544   4455554  4777665443    222  2222   247777654444


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +.+...  .+.+|++|+|+|..                        ..+..++.++.  .  |++|.+++..
T Consensus        99 ~~~~~~--~~~~D~vi~~~g~~------------------------~~~~~~~~l~~--~--G~~v~~g~~~  140 (198)
T 1pqw_A           99 ILELTD--GYGVDVVLNSLAGE------------------------AIQRGVQILAP--G--GRFIELGKKD  140 (198)
T ss_dssp             HHHHTT--TCCEEEEEECCCTH------------------------HHHHHHHTEEE--E--EEEEECSCGG
T ss_pred             HHHHhC--CCCCeEEEECCchH------------------------HHHHHHHHhcc--C--CEEEEEcCCC
Confidence            433321  13699999999721                        12344444543  3  8999998864

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=97.95  E-value=5.1e-06  Score=77.29  Aligned_cols=98  Identities=9%  Similarity=0.034  Sum_probs=58.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +++||+++ ||||       +|+|++++..+.+.+. .+.++.|+.++++++++++.     .++.    ++.+.   .+
T Consensus       361 ~l~~k~vl-V~Ga-------GGig~aia~~L~~~G~-~V~i~~R~~~~a~~la~~~~-----~~~~----~~~dl---~~  419 (523)
T 2o7s_A          361 PLASKTVV-VIGA-------GGAGKALAYGAKEKGA-KVVIANRTYERALELAEAIG-----GKAL----SLTDL---DN  419 (523)
T ss_dssp             -----CEE-EECC-------SHHHHHHHHHHHHHCC--CEEEESSHHHHHHHHHHTT-----C-CE----ETTTT---TT
T ss_pred             ccCCCEEE-EECC-------cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC-----Ccee----eHHHh---hh
Confidence            57889999 9999       7999999655444432 34445699988888776652     2222    22221   10


Q ss_pred             HHHHHHHhCCCccEEEEcccccC-------CCCCCCCcchhhhhhhhhhHHH
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG-------LGFSHTEDGFETTFQVNHLAHF  146 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~-------~~~~~~~~~~~~~~~vN~~~~~  146 (292)
                      +      ..+.+|+||||+|+..       +..+.+.+.+...+++|+.+..
T Consensus       420 ~------~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~  465 (523)
T 2o7s_A          420 Y------HPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRI  465 (523)
T ss_dssp             C--------CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSS
T ss_pred             c------cccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCcc
Confidence            0      1135899999999742       2233456678889999998764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.94  E-value=4.5e-05  Score=55.53  Aligned_cols=73  Identities=10%  Similarity=-0.071  Sum_probs=52.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+++++ |+|+       +++|..+++   .|...| +.|+  .|+.++.+...        ...+..+.+|+++.+++.
T Consensus         4 ~~~~v~-I~G~-------G~iG~~~~~---~l~~~g~~~v~~~~r~~~~~~~~~--------~~~~~~~~~d~~~~~~~~   64 (118)
T 3ic5_A            4 MRWNIC-VVGA-------GKIGQMIAA---LLKTSSNYSVTVADHDLAALAVLN--------RMGVATKQVDAKDEAGLA   64 (118)
T ss_dssp             TCEEEE-EECC-------SHHHHHHHH---HHHHCSSEEEEEEESCHHHHHHHH--------TTTCEEEECCTTCHHHHH
T ss_pred             CcCeEE-EECC-------CHHHHHHHH---HHHhCCCceEEEEeCCHHHHHHHH--------hCCCcEEEecCCCHHHHH
Confidence            356777 9998       799999944   455666 5554  58887766543        125667899999987776


Q ss_pred             HHHHHHHHhCCCccEEEEcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +++       ..+|++|++++.
T Consensus        65 ~~~-------~~~d~vi~~~~~   79 (118)
T 3ic5_A           65 KAL-------GGFDAVISAAPF   79 (118)
T ss_dssp             HHT-------TTCSEEEECSCG
T ss_pred             HHH-------cCCCEEEECCCc
Confidence            654       368999999963

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.93  E-value=4.2e-06  Score=71.74  Aligned_cols=79  Identities=13%  Similarity=0.170  Sum_probs=55.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ |||+       +|+|+++   +..|+..| .|+  .|+.++++++.+++..... ... .+++|+++.   
T Consensus       125 ~l~~k~vl-V~Ga-------GgiG~ai---a~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~-~~~-~~~~d~~~~---  187 (287)
T 1nvt_A          125 RVKDKNIV-IYGA-------GGAARAV---AFELAKDN-NIIIANRTVEKAEALAKEIAEKLN-KKF-GEEVKFSGL---  187 (287)
T ss_dssp             CCCSCEEE-EECC-------SHHHHHH---HHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHT-CCH-HHHEEEECT---
T ss_pred             CcCCCEEE-EECc-------hHHHHHH---HHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcc-ccc-ceeEEEeeH---
Confidence            57899999 9998       7999999   66677777 665  3888888888887754310 010 123455442   


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG  124 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~  124 (292)
                             .+..+++|+||+|+|...
T Consensus       188 -------~~~~~~~DilVn~ag~~~  205 (287)
T 1nvt_A          188 -------DVDLDGVDIIINATPIGM  205 (287)
T ss_dssp             -------TCCCTTCCEEEECSCTTC
T ss_pred             -------HHhhCCCCEEEECCCCCC
Confidence                   344678999999999753

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.80  E-value=4.2e-05  Score=66.80  Aligned_cols=77  Identities=9%  Similarity=0.074  Sum_probs=52.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |||++      +|||.++++.+.   ..|+.|+  .++.++++.+ +++     +..   ..+|.++.+++.+
T Consensus       145 ~g~~vl-V~Ga~------ggiG~~~~~~~~---~~G~~V~~~~~~~~~~~~~-~~~-----g~~---~~~d~~~~~~~~~  205 (333)
T 1v3u_A          145 GGETVL-VSAAA------GAVGSVVGQIAK---LKGCKVVGAAGSDEKIAYL-KQI-----GFD---AAFNYKTVNSLEE  205 (333)
T ss_dssp             SSCEEE-EESTT------BHHHHHHHHHHH---HTTCEEEEEESSHHHHHHH-HHT-----TCS---EEEETTSCSCHHH
T ss_pred             CCCEEE-EecCC------CcHHHHHHHHHH---HCCCEEEEEeCCHHHHHHH-Hhc-----CCc---EEEecCCHHHHHH
Confidence            478888 99999      999999955544   4566655  4777776554 333     222   2358877455555


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      .+.++..  +.+|++|+|+|
T Consensus       206 ~~~~~~~--~~~d~vi~~~g  223 (333)
T 1v3u_A          206 ALKKASP--DGYDCYFDNVG  223 (333)
T ss_dssp             HHHHHCT--TCEEEEEESSC
T ss_pred             HHHHHhC--CCCeEEEECCC
Confidence            5555533  57999999999

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.76  E-value=1e-07  Score=86.74  Aligned_cols=44  Identities=18%  Similarity=-0.040  Sum_probs=32.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAIS   75 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~   75 (292)
                      .++.||+++ |||+       +|||+++   +..+...|+.|++  ++..++.++..
T Consensus       261 ~~L~GKtVv-VtGa-------GgIG~ai---A~~Laa~GA~Viv~D~~~~~a~~Aa~  306 (488)
T 3ond_A          261 VMIAGKVAV-VAGY-------GDVGKGC---AAALKQAGARVIVTEIDPICALQATM  306 (488)
T ss_dssp             CCCTTCEEE-EECC-------SHHHHHH---HHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CcccCCEEE-EECC-------CHHHHHH---HHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            468999999 9998       7999999   5556666777764  67766655543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.73  E-value=0.00011  Score=63.48  Aligned_cols=81  Identities=14%  Similarity=0.118  Sum_probs=56.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC---HHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC---WDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      .+++||+++ |+|+       +|+|++++..   |...|+   .|+.|+   .++++++++++.+..+ ..+  ...++.
T Consensus       150 ~~l~gk~~l-VlGa-------GG~g~aia~~---L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~-~~~--~~~~~~  215 (315)
T 3tnl_A          150 HDIIGKKMT-ICGA-------GGAATAICIQ---AALDGVKEISIFNRKDDFYANAEKTVEKINSKTD-CKA--QLFDIE  215 (315)
T ss_dssp             CCCTTSEEE-EECC-------SHHHHHHHHH---HHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSS-CEE--EEEETT
T ss_pred             CCccCCEEE-EECC-------ChHHHHHHHH---HHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcC-Cce--EEeccc
Confidence            568899999 9998       7999999555   445554   445699   9999999999987642 233  345666


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+++.+.   +    ...|+|||+...
T Consensus       216 ~~~~l~~~---l----~~aDiIINaTp~  236 (315)
T 3tnl_A          216 DHEQLRKE---I----AESVIFTNATGV  236 (315)
T ss_dssp             CHHHHHHH---H----HTCSEEEECSST
T ss_pred             hHHHHHhh---h----cCCCEEEECccC
Confidence            65554433   2    247999998654

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.72  E-value=5.2e-05  Score=69.06  Aligned_cols=76  Identities=8%  Similarity=0.008  Sum_probs=53.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++++++ |+| +      +|+|+++++.   |...|+.|+  .|+.++++++.+    ..  ..+..+++|+++.+++.+
T Consensus         2 ~~k~Vl-ViG-a------G~iG~~ia~~---L~~~G~~V~v~~R~~~~a~~la~----~~--~~~~~~~~Dv~d~~~l~~   64 (450)
T 1ff9_A            2 ATKSVL-MLG-S------GFVTRPTLDV---LTDSGIKVTVACRTLESAKKLSA----GV--QHSTPISLDVNDDAALDA   64 (450)
T ss_dssp             CCCEEE-EEC-C------STTHHHHHHH---HHTTTCEEEEEESSHHHHHHTTT----TC--TTEEEEECCTTCHHHHHH
T ss_pred             CCCEEE-EEC-C------CHHHHHHHHH---HHhCcCEEEEEECCHHHHHHHHH----hc--CCceEEEeecCCHHHHHH
Confidence            367788 888 6      8999999554   555665554  588777655433    21  146788999999888776


Q ss_pred             HHHHHHHhCCCccEEEEccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      +++       .+|+||||++..
T Consensus        65 ~l~-------~~DvVIn~a~~~   79 (450)
T 1ff9_A           65 EVA-------KHDLVISLIPYT   79 (450)
T ss_dssp             HHT-------TSSEEEECCC--
T ss_pred             HHc-------CCcEEEECCccc
Confidence            642       589999999864

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.00011  Score=67.11  Aligned_cols=78  Identities=10%  Similarity=-0.000  Sum_probs=53.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++++++++ |+|+       +|+|+++++.   |.+. +..|  +.|+.++++++.++   .    .+..+.+|+++.+
T Consensus        19 ~~l~~k~Vl-IiGA-------GgiG~aia~~---L~~~~g~~V~v~~R~~~ka~~la~~---~----~~~~~~~D~~d~~   80 (467)
T 2axq_A           19 GRHMGKNVL-LLGS-------GFVAQPVIDT---LAANDDINVTVACRTLANAQALAKP---S----GSKAISLDVTDDS   80 (467)
T ss_dssp             ----CEEEE-EECC-------STTHHHHHHH---HHTSTTEEEEEEESSHHHHHHHHGG---G----TCEEEECCTTCHH
T ss_pred             cCCCCCEEE-EECC-------hHHHHHHHHH---HHhCCCCeEEEEECCHHHHHHHHHh---c----CCcEEEEecCCHH
Confidence            457788888 8996       8999999554   5454 4444  46998887765543   1    3566789999988


Q ss_pred             HHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      ++.++++       .+|+|||+++..
T Consensus        81 ~l~~~l~-------~~DvVIn~tp~~   99 (467)
T 2axq_A           81 ALDKVLA-------DNDVVISLIPYT   99 (467)
T ss_dssp             HHHHHHH-------TSSEEEECSCGG
T ss_pred             HHHHHHc-------CCCEEEECCchh
Confidence            7766643       489999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.66  E-value=5.4e-05  Score=67.20  Aligned_cols=107  Identities=9%  Similarity=0.025  Sum_probs=65.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..+.+++++ |+|+       ++||+.+++.+.   ..|+.|+  .|+.++++.+.+.+     +..   +.+|.++.++
T Consensus       162 ~~l~~~~V~-ViGa-------G~iG~~~a~~l~---~~Ga~V~~~d~~~~~~~~~~~~~-----g~~---~~~~~~~~~~  222 (369)
T 2eez_A          162 PGVAPASVV-ILGG-------GTVGTNAAKIAL---GMGAQVTILDVNHKRLQYLDDVF-----GGR---VITLTATEAN  222 (369)
T ss_dssp             TBBCCCEEE-EECC-------SHHHHHHHHHHH---HTTCEEEEEESCHHHHHHHHHHT-----TTS---EEEEECCHHH
T ss_pred             CCCCCCEEE-EECC-------CHHHHHHHHHHH---hCCCEEEEEECCHHHHHHHHHhc-----Cce---EEEecCCHHH
Confidence            357899999 9998       799999955544   5555554  48887776554332     222   4567788777


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +.+++.       ..|++|+|+|.....   +              +.++.+..++.|+  +.  ++||++++..+
T Consensus       223 l~~~~~-------~~DvVi~~~g~~~~~---~--------------~~li~~~~l~~mk--~g--g~iV~v~~~~g  270 (369)
T 2eez_A          223 IKKSVQ-------HADLLIGAVLVPGAK---A--------------PKLVTRDMLSLMK--EG--AVIVDVAVDQG  270 (369)
T ss_dssp             HHHHHH-------HCSEEEECCC------------------------CCSCHHHHTTSC--TT--CEEEECC----
T ss_pred             HHHHHh-------CCCEEEECCCCCccc---c--------------chhHHHHHHHhhc--CC--CEEEEEecCCC
Confidence            666543       479999999964210   0              1123345555564  34  89999998653

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.46  E-value=0.00025  Score=60.46  Aligned_cols=82  Identities=7%  Similarity=-0.058  Sum_probs=53.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+++||+++ |+|+       +|+|++++..+.+++...+.|+.|+.++++++++++....+..++.  ..++.+.   .
T Consensus       123 ~~l~~k~vl-VlGa-------GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~--~~~~~~l---~  189 (283)
T 3jyo_A          123 PNAKLDSVV-QVGA-------GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVDARGI---E  189 (283)
T ss_dssp             TTCCCSEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEE--EECSTTH---H
T ss_pred             cCcCCCEEE-EECC-------cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEE--EcCHHHH---H
Confidence            367899999 9998       7999999555443322223445699999999999998764433443  3343332   2


Q ss_pred             HHHHHHHHhCCCccEEEEcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+.       ..|+|||+...
T Consensus       190 ~~l~-------~~DiVInaTp~  204 (283)
T 3jyo_A          190 DVIA-------AADGVVNATPM  204 (283)
T ss_dssp             HHHH-------HSSEEEECSST
T ss_pred             HHHh-------cCCEEEECCCC
Confidence            2222       36999998754

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.43  E-value=0.00014  Score=61.68  Aligned_cols=75  Identities=8%  Similarity=0.042  Sum_probs=50.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++||+++ |+|+       +|+|+++++.   |...|..|+  .|+.++++++.+++...  + .+.  ..|+   +++
T Consensus       116 ~l~~k~vl-ViGa-------Gg~g~a~a~~---L~~~G~~V~v~~R~~~~~~~la~~~~~~--~-~~~--~~~~---~~~  176 (271)
T 1nyt_A          116 IRPGLRIL-LIGA-------GGASRGVLLP---LLSLDCAVTITNRTVSRAEELAKLFAHT--G-SIQ--ALSM---DEL  176 (271)
T ss_dssp             CCTTCEEE-EECC-------SHHHHHHHHH---HHHTTCEEEEECSSHHHHHHHHHHTGGG--S-SEE--ECCS---GGG
T ss_pred             CcCCCEEE-EECC-------cHHHHHHHHH---HHHcCCEEEEEECCHHHHHHHHHHhhcc--C-Cee--EecH---HHh
Confidence            56789999 9998       7999999554   555555554  48998888887776432  1 221  2333   221


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG  124 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~  124 (292)
                             . + +..|+||+|++...
T Consensus       177 -------~-~-~~~DivVn~t~~~~  192 (271)
T 1nyt_A          177 -------E-G-HEFDLIINATSSGI  192 (271)
T ss_dssp             -------T-T-CCCSEEEECCSCGG
T ss_pred             -------c-c-CCCCEEEECCCCCC
Confidence                   1 1 57999999999753

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=97.42  E-value=0.00022  Score=62.51  Aligned_cols=79  Identities=10%  Similarity=0.049  Sum_probs=51.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +|||.++++.+.   ..|+.|+  .++.++++.+.+++     +...   .+|.++.+++.+
T Consensus       155 ~g~~vl-I~Ga~------g~iG~~~~~~a~---~~G~~V~~~~~~~~~~~~~~~~~-----g~~~---~~d~~~~~~~~~  216 (345)
T 2j3h_A          155 EGETVY-VSAAS------GAVGQLVGQLAK---MMGCYVVGSAGSKEKVDLLKTKF-----GFDD---AFNYKEESDLTA  216 (345)
T ss_dssp             TTCEEE-ESSTT------SHHHHHHHHHHH---HTTCEEEEEESSHHHHHHHHHTS-----CCSE---EEETTSCSCSHH
T ss_pred             CCCEEE-EECCC------cHHHHHHHHHHH---HCCCEEEEEeCCHHHHHHHHHHc-----CCce---EEecCCHHHHHH
Confidence            478888 99999      999999966644   4455554  47777765543222     2222   247766545555


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.++..  +.+|++|+|+|.
T Consensus       217 ~~~~~~~--~~~d~vi~~~g~  235 (345)
T 2j3h_A          217 ALKRCFP--NGIDIYFENVGG  235 (345)
T ss_dssp             HHHHHCT--TCEEEEEESSCH
T ss_pred             HHHHHhC--CCCcEEEECCCH
Confidence            5555432  479999999983

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00029  Score=61.83  Aligned_cols=78  Identities=10%  Similarity=0.006  Sum_probs=52.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +|||.++++.+.   ..|+.|+  .++.++.+.+ +++     +..   ..+|.++.+++.+
T Consensus       169 ~g~~vl-V~Ga~------ggiG~~~~~~a~---~~Ga~V~~~~~~~~~~~~~-~~~-----g~~---~~~d~~~~~~~~~  229 (347)
T 2hcy_A          169 AGHWVA-ISGAA------GGLGSLAVQYAK---AMGYRVLGIDGGEGKEELF-RSI-----GGE---VFIDFTKEKDIVG  229 (347)
T ss_dssp             TTCEEE-EETTT------SHHHHHHHHHHH---HTTCEEEEEECSTTHHHHH-HHT-----TCC---EEEETTTCSCHHH
T ss_pred             CCCEEE-EECCC------chHHHHHHHHHH---HCCCcEEEEcCCHHHHHHH-HHc-----CCc---eEEecCccHhHHH
Confidence            478888 99999      999999966544   4555555  4676665432 222     222   2248876666666


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.++...  .+|++|+|+|.
T Consensus       230 ~~~~~~~~--~~D~vi~~~g~  248 (347)
T 2hcy_A          230 AVLKATDG--GAHGVINVSVS  248 (347)
T ss_dssp             HHHHHHTS--CEEEEEECSSC
T ss_pred             HHHHHhCC--CCCEEEECCCc
Confidence            66665443  69999999984

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=97.36  E-value=0.00074  Score=58.78  Aligned_cols=78  Identities=10%  Similarity=0.050  Sum_probs=50.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ ||||+      +|||.++++.+.   ..|+.|+  .++.++.+.+. ++     +...   .+|.++.+..+.
T Consensus       145 ~g~~vl-V~Ga~------ggiG~~~~~~a~---~~G~~Vi~~~~~~~~~~~~~-~~-----g~~~---~~d~~~~~~~~~  205 (333)
T 1wly_A          145 PGDYVL-IHAAA------GGMGHIMVPWAR---HLGATVIGTVSTEEKAETAR-KL-----GCHH---TINYSTQDFAEV  205 (333)
T ss_dssp             TTCEEE-ETTTT------STTHHHHHHHHH---HTTCEEEEEESSHHHHHHHH-HH-----TCSE---EEETTTSCHHHH
T ss_pred             CCCEEE-EECCc------cHHHHHHHHHHH---HCCCEEEEEeCCHHHHHHHH-Hc-----CCCE---EEECCCHHHHHH
Confidence            478888 99999      999999966544   4455555  47776765543 23     2222   247766554444


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+...  ...+|++|+|+|.
T Consensus       206 i~~~~~--~~~~d~vi~~~g~  224 (333)
T 1wly_A          206 VREITG--GKGVDVVYDSIGK  224 (333)
T ss_dssp             HHHHHT--TCCEEEEEECSCT
T ss_pred             HHHHhC--CCCCeEEEECCcH
Confidence            433321  1369999999983

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.36  E-value=0.00086  Score=57.86  Aligned_cols=85  Identities=14%  Similarity=0.067  Sum_probs=55.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC---HHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC---WDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ |+|+       +|+|++++..+.+++...+.|+.|+   .++++++++++....+ ..+.  ..++.+.+
T Consensus       144 ~~l~gk~~l-VlGA-------GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~-~~v~--~~~~~~l~  212 (312)
T 3t4e_A          144 FDMRGKTMV-LLGA-------GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTD-CVVT--VTDLADQH  212 (312)
T ss_dssp             CCCTTCEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSS-CEEE--EEETTCHH
T ss_pred             CCcCCCEEE-EECc-------CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccC-cceE--EechHhhh
Confidence            567899999 9998       7999999555444322234555699   9999999999876642 2333  34555543


Q ss_pred             HHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      ...+.   +    ...|+|||+-...
T Consensus       213 ~~~~~---l----~~~DiIINaTp~G  231 (312)
T 3t4e_A          213 AFTEA---L----ASADILTNGTKVG  231 (312)
T ss_dssp             HHHHH---H----HHCSEEEECSSTT
T ss_pred             hhHhh---c----cCceEEEECCcCC
Confidence            22222   2    1369999986553

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.35  E-value=0.00048  Score=59.80  Aligned_cols=77  Identities=10%  Similarity=0.015  Sum_probs=49.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ ||||+      +|||.++++.+..   .|+.|+  .++.++.+.+.+ +     +...   .+|.++.+..+.
T Consensus       140 ~g~~vl-V~Ga~------ggiG~~~~~~a~~---~G~~V~~~~~~~~~~~~~~~-~-----g~~~---~~~~~~~~~~~~  200 (327)
T 1qor_A          140 PDEQFL-FHAAA------GGVGLIACQWAKA---LGAKLIGTVGTAQKAQSALK-A-----GAWQ---VINYREEDLVER  200 (327)
T ss_dssp             TTCEEE-ESSTT------BHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHH-H-----TCSE---EEETTTSCHHHH
T ss_pred             CCCEEE-EECCC------CHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH-c-----CCCE---EEECCCccHHHH
Confidence            478888 99999      9999999666554   455554  477777655433 3     2222   247766554444


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+...  ...+|++|+|+|
T Consensus       201 ~~~~~~--~~~~D~vi~~~g  218 (327)
T 1qor_A          201 LKEITG--GKKVRVVYDSVG  218 (327)
T ss_dssp             HHHHTT--TCCEEEEEECSC
T ss_pred             HHHHhC--CCCceEEEECCc
Confidence            433321  136999999998

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=97.31  E-value=0.00034  Score=61.57  Aligned_cols=75  Identities=9%  Similarity=0.035  Sum_probs=47.1

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ++++ |||++      +|||.++++.+.   ..|+ .|+  .++.++.+.+.+++     +..   ..+|.++.+. .+.
T Consensus       162 ~~vl-I~Gas------ggiG~~~~~~a~---~~Ga~~Vi~~~~~~~~~~~~~~~~-----g~~---~~~d~~~~~~-~~~  222 (357)
T 2zb4_A          162 KTMV-VSGAA------GACGSVAGQIGH---FLGCSRVVGICGTHEKCILLTSEL-----GFD---AAINYKKDNV-AEQ  222 (357)
T ss_dssp             CEEE-ESSTT------BHHHHHHHHHHH---HTTCSEEEEEESCHHHHHHHHHTS-----CCS---EEEETTTSCH-HHH
T ss_pred             cEEE-EECCC------cHHHHHHHHHHH---HCCCCeEEEEeCCHHHHHHHHHHc-----CCc---eEEecCchHH-HHH
Confidence            8888 99999      999999966544   4555 554  57777765544322     222   2357766433 233


Q ss_pred             HHHHHHhCCCccEEEEccc
Q psy4251         103 AEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg  121 (292)
                      +.++..  +.+|++|+|+|
T Consensus       223 ~~~~~~--~~~d~vi~~~G  239 (357)
T 2zb4_A          223 LRESCP--AGVDVYFDNVG  239 (357)
T ss_dssp             HHHHCT--TCEEEEEESCC
T ss_pred             HHHhcC--CCCCEEEECCC
Confidence            333222  26999999999

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.22  E-value=0.00089  Score=60.80  Aligned_cols=83  Identities=13%  Similarity=0.140  Sum_probs=51.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEE--ccCC-----
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAME--LDLC-----   94 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~--~Dls-----   94 (292)
                      .|++++ |+|++      +|||..++..+.   ..|+.++  .++.++.+.+ +++     +....+-.  .|+.     
T Consensus       220 ~g~~Vl-V~Gas------G~iG~~a~qla~---~~Ga~vi~~~~~~~~~~~~-~~l-----Ga~~~i~~~~~~~~~~~~~  283 (447)
T 4a0s_A          220 QGDIVL-IWGAS------GGLGSYAIQFVK---NGGGIPVAVVSSAQKEAAV-RAL-----GCDLVINRAELGITDDIAD  283 (447)
T ss_dssp             TTCEEE-ETTTT------SHHHHHHHHHHH---HTTCEEEEEESSHHHHHHH-HHT-----TCCCEEEHHHHTCCTTGGG
T ss_pred             CCCEEE-EECCC------CHHHHHHHHHHH---HcCCEEEEEeCCHHHHHHH-Hhc-----CCCEEEecccccccccccc
Confidence            578898 99999      999999966654   3455544  4777776544 222     22222222  2221     


Q ss_pred             ----ChHHHHHHHHHHHHhCC-CccEEEEcccc
Q psy4251          95 ----RLKSVKKFAEEYQKKFR-SLNILVLNAGV  122 (292)
Q Consensus        95 ----~~~~v~~~~~~~~~~~~-~id~lI~nAg~  122 (292)
                          +.++++.+.+++.+..+ .+|++|+|+|.
T Consensus       284 ~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~  316 (447)
T 4a0s_A          284 DPRRVVETGRKLAKLVVEKAGREPDIVFEHTGR  316 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCH
T ss_pred             cccccchhhhHHHHHHHHHhCCCceEEEECCCc
Confidence                12445556666665444 69999999983

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=97.21  E-value=0.00067  Score=59.68  Aligned_cols=78  Identities=12%  Similarity=0.070  Sum_probs=49.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+||+      +|||.++++.+.   ..|+.|+  .++.++.+.+ +++     +..   ..+|.++.+.++.
T Consensus       162 ~g~~vl-V~Ga~------ggiG~~~~~~a~---~~Ga~Vi~~~~~~~~~~~~-~~~-----g~~---~~~~~~~~~~~~~  222 (354)
T 2j8z_A          162 AGDYVL-IHAGL------SGVGTAAIQLTR---MAGAIPLVTAGSQKKLQMA-EKL-----GAA---AGFNYKKEDFSEA  222 (354)
T ss_dssp             TTCEEE-ESSTT------SHHHHHHHHHHH---HTTCEEEEEESCHHHHHHH-HHH-----TCS---EEEETTTSCHHHH
T ss_pred             CCCEEE-EECCc------cHHHHHHHHHHH---HcCCEEEEEeCCHHHHHHH-HHc-----CCc---EEEecCChHHHHH
Confidence            478888 99999      999999966654   4455555  4787776654 333     222   2346666544443


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+...  ...+|++|+|+|.
T Consensus       223 ~~~~~~--~~~~d~vi~~~G~  241 (354)
T 2j8z_A          223 TLKFTK--GAGVNLILDCIGG  241 (354)
T ss_dssp             HHHHTT--TSCEEEEEESSCG
T ss_pred             HHHHhc--CCCceEEEECCCc
Confidence            332221  1369999999984

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.20  E-value=0.00084  Score=58.49  Aligned_cols=78  Identities=10%  Similarity=0.105  Sum_probs=49.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +|||.++++.+.   ..|+.|+  .++.++.+.+.+++     +...   ..|.++.+..+.
T Consensus       149 ~g~~vl-I~Ga~------g~iG~~~~~~a~---~~Ga~Vi~~~~~~~~~~~~~~~~-----g~~~---~~~~~~~~~~~~  210 (336)
T 4b7c_A          149 NGETVV-ISGAA------GAVGSVAGQIAR---LKGCRVVGIAGGAEKCRFLVEEL-----GFDG---AIDYKNEDLAAG  210 (336)
T ss_dssp             TTCEEE-ESSTT------SHHHHHHHHHHH---HTTCEEEEEESSHHHHHHHHHTT-----CCSE---EEETTTSCHHHH
T ss_pred             CCCEEE-EECCC------CHHHHHHHHHHH---HCCCEEEEEeCCHHHHHHHHHHc-----CCCE---EEECCCHHHHHH
Confidence            478888 99999      999999966544   4555655  47877766553333     2222   246655443333


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      + .++.  .+.+|++|+|+|.
T Consensus       211 ~-~~~~--~~~~d~vi~~~g~  228 (336)
T 4b7c_A          211 L-KREC--PKGIDVFFDNVGG  228 (336)
T ss_dssp             H-HHHC--TTCEEEEEESSCH
T ss_pred             H-HHhc--CCCceEEEECCCc
Confidence            3 2222  2479999999984

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.16  E-value=0.0013  Score=56.18  Aligned_cols=93  Identities=8%  Similarity=0.104  Sum_probs=67.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCH------------------HHHHHHHHHHHhhCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCW------------------DKANDAISKILTEKP   82 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~------------------~~~~~~~~~l~~~~~   82 (292)
                      ..|++++|+ |.|+       +|+|..++..+...+-....|+..+.                  .|++.+++.+++.+|
T Consensus        32 ~kL~~~~Vl-VvGa-------GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP  103 (292)
T 3h8v_A           32 EKIRTFAVA-IVGV-------GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINP  103 (292)
T ss_dssp             CGGGGCEEE-EECC-------SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCT
T ss_pred             HHHhCCeEE-EECc-------CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCC
Confidence            457788899 9999       79999995554433222234443432                  688899999999999


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHh----CCCccEEEEccc
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKK----FRSLNILVLNAG  121 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~----~~~id~lI~nAg  121 (292)
                      ..++..+..++++.+.++.+++.+...    ....|+||.+..
T Consensus       104 ~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D  146 (292)
T 3h8v_A          104 DVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD  146 (292)
T ss_dssp             TSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred             CcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence            999999999998877777777655321    136899997543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=97.13  E-value=0.0022  Score=55.97  Aligned_cols=102  Identities=12%  Similarity=0.020  Sum_probs=62.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +|+|..+++.+.   ..|+.|+  .++.++.+.+. ++     +...   .+|.++.+- .+
T Consensus       166 ~g~~vl-V~Gas------g~iG~~~~~~a~---~~G~~Vi~~~~~~~~~~~~~-~~-----ga~~---~~d~~~~~~-~~  225 (343)
T 2eih_A          166 PGDDVL-VMAAG------SGVSVAAIQIAK---LFGARVIATAGSEDKLRRAK-AL-----GADE---TVNYTHPDW-PK  225 (343)
T ss_dssp             TTCEEE-ECSTT------STTHHHHHHHHH---HTTCEEEEEESSHHHHHHHH-HH-----TCSE---EEETTSTTH-HH
T ss_pred             CCCEEE-EECCC------chHHHHHHHHHH---HCCCEEEEEeCCHHHHHHHH-hc-----CCCE---EEcCCcccH-HH
Confidence            478888 99999      999999966544   4455555  47777766543 23     2222   247766432 22


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      .+.++.. ...+|++|+|+| ..                       ..+.+++.++.  .  |++|.+++...
T Consensus       226 ~~~~~~~-~~~~d~vi~~~g-~~-----------------------~~~~~~~~l~~--~--G~~v~~g~~~~  269 (343)
T 2eih_A          226 EVRRLTG-GKGADKVVDHTG-AL-----------------------YFEGVIKATAN--G--GRIAIAGASSG  269 (343)
T ss_dssp             HHHHHTT-TTCEEEEEESSC-SS-----------------------SHHHHHHHEEE--E--EEEEESSCCCS
T ss_pred             HHHHHhC-CCCceEEEECCC-HH-----------------------HHHHHHHhhcc--C--CEEEEEecCCC
Confidence            2222221 136999999998 21                       02344444543  3  89999987643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=97.10  E-value=0.001  Score=58.45  Aligned_cols=78  Identities=8%  Similarity=0.036  Sum_probs=48.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +|||.++++.+.   ..|+.|+  .++.++.+.+ +++     +..   ..+|.++.+..+.
T Consensus       170 ~g~~vl-V~Gas------ggiG~~~~~~a~---~~Ga~Vi~~~~~~~~~~~~-~~~-----ga~---~~~d~~~~~~~~~  230 (351)
T 1yb5_A          170 AGESVL-VHGAS------GGVGLAACQIAR---AYGLKILGTAGTEEGQKIV-LQN-----GAH---EVFNHREVNYIDK  230 (351)
T ss_dssp             TTCEEE-EETCS------SHHHHHHHHHHH---HTTCEEEEEESSHHHHHHH-HHT-----TCS---EEEETTSTTHHHH
T ss_pred             CcCEEE-EECCC------ChHHHHHHHHHH---HCCCEEEEEeCChhHHHHH-HHc-----CCC---EEEeCCCchHHHH
Confidence            478888 99999      999999966644   4455555  4777776532 222     222   1246666544444


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+...  ...+|++|+|+|.
T Consensus       231 ~~~~~~--~~~~D~vi~~~G~  249 (351)
T 1yb5_A          231 IKKYVG--EKGIDIIIEMLAN  249 (351)
T ss_dssp             HHHHHC--TTCEEEEEESCHH
T ss_pred             HHHHcC--CCCcEEEEECCCh
Confidence            333221  1369999999983

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.04  E-value=0.0017  Score=56.54  Aligned_cols=102  Identities=12%  Similarity=0.045  Sum_probs=60.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+||+      +|||.+++..+.   ..|+.|+  .++.++.+.+ +++     +....   .|.++.+..+.
T Consensus       148 ~g~~vl-V~Ga~------g~iG~~~~~~a~---~~Ga~Vi~~~~~~~~~~~~-~~~-----ga~~~---~~~~~~~~~~~  208 (334)
T 3qwb_A          148 KGDYVL-LFAAA------GGVGLILNQLLK---MKGAHTIAVASTDEKLKIA-KEY-----GAEYL---INASKEDILRQ  208 (334)
T ss_dssp             TTCEEE-ESSTT------BHHHHHHHHHHH---HTTCEEEEEESSHHHHHHH-HHT-----TCSEE---EETTTSCHHHH
T ss_pred             CCCEEE-EECCC------CHHHHHHHHHHH---HCCCEEEEEeCCHHHHHHH-HHc-----CCcEE---EeCCCchHHHH
Confidence            478888 99999      999999966654   3455555  4777766533 222     22222   35544333333


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +. ++.. ...+|++|+|+|..                        ..+..+..++.  .  |++|.++....
T Consensus       209 ~~-~~~~-~~g~D~vid~~g~~------------------------~~~~~~~~l~~--~--G~iv~~G~~~~  251 (334)
T 3qwb_A          209 VL-KFTN-GKGVDASFDSVGKD------------------------TFEISLAALKR--K--GVFVSFGNASG  251 (334)
T ss_dssp             HH-HHTT-TSCEEEEEECCGGG------------------------GHHHHHHHEEE--E--EEEEECCCTTC
T ss_pred             HH-HHhC-CCCceEEEECCChH------------------------HHHHHHHHhcc--C--CEEEEEcCCCC
Confidence            22 2211 13699999999841                        12334444443  3  99999987643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.95  E-value=0.0021  Score=56.21  Aligned_cols=79  Identities=6%  Similarity=0.056  Sum_probs=48.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +|||..++..+..+.  |+.|+  .++.++.+.+ +++     +...   .+|.++.+.++.
T Consensus       170 ~g~~vl-V~Gag------g~iG~~~~~~a~~~~--Ga~Vi~~~~~~~~~~~~-~~~-----g~~~---~~~~~~~~~~~~  231 (347)
T 1jvb_A          170 PTKTLL-VVGAG------GGLGTMAVQIAKAVS--GATIIGVDVREEAVEAA-KRA-----GADY---VINASMQDPLAE  231 (347)
T ss_dssp             TTCEEE-EETTT------SHHHHHHHHHHHHHT--CCEEEEEESSHHHHHHH-HHH-----TCSE---EEETTTSCHHHH
T ss_pred             CCCEEE-EECCC------ccHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHH-HHh-----CCCE---EecCCCccHHHH
Confidence            478888 99998      999999966654330  55554  4777776554 333     2222   235655433332


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      + .++... +.+|++|+|+|.
T Consensus       232 ~-~~~~~~-~~~d~vi~~~g~  250 (347)
T 1jvb_A          232 I-RRITES-KGVDAVIDLNNS  250 (347)
T ss_dssp             H-HHHTTT-SCEEEEEESCCC
T ss_pred             H-HHHhcC-CCceEEEECCCC
Confidence            2 222211 479999999984

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.88  E-value=0.0029  Score=47.52  Aligned_cols=73  Identities=11%  Similarity=0.046  Sum_probs=50.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+++++ |+|+       +.+|..+   +..|.+.|+.|+  .+++++.+...+    .    .+.++.+|.++++.+++
T Consensus         5 ~~~~v~-I~G~-------G~iG~~l---a~~L~~~g~~V~~id~~~~~~~~~~~----~----~~~~~~gd~~~~~~l~~   65 (141)
T 3llv_A            5 GRYEYI-VIGS-------EAAGVGL---VRELTAAGKKVLAVDKSKEKIELLED----E----GFDAVIADPTDESFYRS   65 (141)
T ss_dssp             -CCSEE-EECC-------SHHHHHH---HHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEECCTTCHHHHHH
T ss_pred             CCCEEE-EECC-------CHHHHHH---HHHHHHCCCeEEEEECCHHHHHHHHH----C----CCcEEECCCCCHHHHHh
Confidence            356788 8998       5699999   445556666554  488777655432    2    35678899999887655


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      +      .....|++|.+.+
T Consensus        66 ~------~~~~~d~vi~~~~   79 (141)
T 3llv_A           66 L------DLEGVSAVLITGS   79 (141)
T ss_dssp             S------CCTTCSEEEECCS
T ss_pred             C------CcccCCEEEEecC
Confidence            4      2346899998766

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.85  E-value=0.0011  Score=49.68  Aligned_cols=75  Identities=11%  Similarity=0.013  Sum_probs=47.2

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      +++++++ |+|+       +++|..+++.   |...|+  .++.++.++.+..    .+.    ....+.+|.++.+.+.
T Consensus         4 ~~~~~v~-I~G~-------G~iG~~~a~~---l~~~g~~v~~~d~~~~~~~~~----~~~----~~~~~~~d~~~~~~l~   64 (144)
T 2hmt_A            4 IKNKQFA-VIGL-------GRFGGSIVKE---LHRMGHEVLAVDINEEKVNAY----ASY----ATHAVIANATEENELL   64 (144)
T ss_dssp             --CCSEE-EECC-------SHHHHHHHHH---HHHTTCCCEEEESCHHHHHTT----TTT----CSEEEECCTTCHHHHH
T ss_pred             CcCCcEE-EECC-------CHHHHHHHHH---HHHCCCEEEEEeCCHHHHHHH----HHh----CCEEEEeCCCCHHHHH
Confidence            4567788 9997       7999999555   444454  4455777654432    221    2356788998865543


Q ss_pred             HHHHHHHHhCCCccEEEEcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      ++      .....|++|++++.
T Consensus        65 ~~------~~~~~d~vi~~~~~   80 (144)
T 2hmt_A           65 SL------GIRNFEYVIVAIGA   80 (144)
T ss_dssp             TT------TGGGCSEEEECCCS
T ss_pred             hc------CCCCCCEEEECCCC
Confidence            32      12468999998873

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.85  E-value=0.0013  Score=55.01  Aligned_cols=81  Identities=10%  Similarity=0.065  Sum_probs=58.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcCH-------------------HHHHHHHHHHHh
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNCW-------------------DKANDAISKILT   79 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~~-------------------~~~~~~~~~l~~   79 (292)
                      .|++++++ |.|+       +|+|..+++.   |+..|+   +|+.++.                   .+++.+++++.+
T Consensus        28 ~l~~~~Vl-VvG~-------Gg~G~~va~~---La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~   96 (249)
T 1jw9_B           28 ALKDSRVL-IVGL-------GGLGCAASQY---LASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTR   96 (249)
T ss_dssp             HHHHCEEE-EECC-------SHHHHHHHHH---HHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHH
T ss_pred             HHhCCeEE-EEee-------CHHHHHHHHH---HHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHH
Confidence            46788898 8998       7999999555   445553   4444665                   789999999999


Q ss_pred             hCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        80 ~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      .+|..++..+..++++ +.+.+++       ...|+||.+.+
T Consensus        97 ~np~~~v~~~~~~~~~-~~~~~~~-------~~~DvVi~~~d  130 (249)
T 1jw9_B           97 INPHIAITPVNALLDD-AELAALI-------AEHDLVLDCTD  130 (249)
T ss_dssp             HCTTSEEEEECSCCCH-HHHHHHH-------HTSSEEEECCS
T ss_pred             HCCCcEEEEEeccCCH-hHHHHHH-------hCCCEEEEeCC
Confidence            8887788888877763 3333332       24799998754

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.80  E-value=0.0036  Score=52.88  Aligned_cols=75  Identities=11%  Similarity=0.093  Sum_probs=49.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++++|+++ |+|+       +|+|++++..   |...|..|  +.|+.++++++.+++...  + .+..  +|+   ++
T Consensus       115 ~~~~~~~vl-vlGa-------Gg~g~a~a~~---L~~~G~~v~v~~R~~~~a~~l~~~~~~~--~-~~~~--~~~---~~  175 (272)
T 1p77_A          115 WLRPNQHVL-ILGA-------GGATKGVLLP---LLQAQQNIVLANRTFSKTKELAERFQPY--G-NIQA--VSM---DS  175 (272)
T ss_dssp             CCCTTCEEE-EECC-------SHHHHTTHHH---HHHTTCEEEEEESSHHHHHHHHHHHGGG--S-CEEE--EEG---GG
T ss_pred             CCcCCCEEE-EECC-------cHHHHHHHHH---HHHCCCEEEEEECCHHHHHHHHHHcccc--C-CeEE--eeH---HH
Confidence            357889999 9998       7999999555   44445444  459999999888877532  1 2322  232   11


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      +.       +  +..|+||++++..
T Consensus       176 ~~-------~--~~~DivIn~t~~~  191 (272)
T 1p77_A          176 IP-------L--QTYDLVINATSAG  191 (272)
T ss_dssp             CC-------C--SCCSEEEECCCC-
T ss_pred             hc-------c--CCCCEEEECCCCC
Confidence            10       1  4799999999875

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=96.80  E-value=0.0065  Score=52.82  Aligned_cols=157  Identities=10%  Similarity=-0.003  Sum_probs=88.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-------EEE--EcC----HHHHHHHHHHHHhhCCCCceEEEEcc
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-------LFY--QNC----WDKANDAISKILTEKPSAQCIAMELD   92 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-------~v~--~r~----~~~~~~~~~~l~~~~~~~~~~~~~~D   92 (292)
                      .+++ ||||+      +.+|..+   +..|...+.       .|.  .++    .++++..+.++.+..  ..+.   .|
T Consensus         6 ~KI~-ViGaa------G~VG~~l---~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~--~~~~---~~   70 (329)
T 1b8p_A            6 MRVA-VTGAA------GQICYSL---LFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA--FPLL---AG   70 (329)
T ss_dssp             EEEE-ESSTT------SHHHHHH---HHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT--CTTE---EE
T ss_pred             CEEE-EECCC------ChHHHHH---HHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc--cccc---Cc
Confidence            4677 99999      8999999   555655553       343  366    666666666776531  1111   24


Q ss_pred             CCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          93 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        93 ls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +....+..+.       +...|+||++||......    ......+..|......+++.+..+-  .+.  ++||++|..
T Consensus        71 i~~~~~~~~a-------l~~aD~Vi~~ag~~~~~g----~~r~dl~~~N~~i~~~i~~~i~~~~--~p~--a~ii~~SNP  135 (329)
T 1b8p_A           71 MTAHADPMTA-------FKDADVALLVGARPRGPG----MERKDLLEANAQIFTVQGKAIDAVA--SRN--IKVLVVGNP  135 (329)
T ss_dssp             EEEESSHHHH-------TTTCSEEEECCCCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHHS--CTT--CEEEECSSS
T ss_pred             EEEecCcHHH-------hCCCCEEEEeCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhc--CCC--eEEEEccCc
Confidence            4333332222       345799999999753221    1234467777777776666665431  134  799999986


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY  222 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~  222 (292)
                      .......-          .+....++....++.++.--..+...+++.+.
T Consensus       136 v~~~t~~~----------~~~~~~~p~~~v~g~t~Ld~~r~~~~la~~lg  175 (329)
T 1b8p_A          136 ANTNAYIA----------MKSAPSLPAKNFTAMLRLDHNRALSQIAAKTG  175 (329)
T ss_dssp             HHHHHHHH----------HHTCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHH----------HHHcCCCCHHHEEEeecHHHHHHHHHHHHHhC
Confidence            53322110          00000122333466666555666667777764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.69  E-value=0.0049  Score=54.03  Aligned_cols=77  Identities=12%  Similarity=0.105  Sum_probs=48.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+||+      +|||.+++..+.   ..|+.|+  .++.++.+.+. ++     +....   +|.++.+..+.
T Consensus       167 ~g~~Vl-V~Gg~------g~iG~~~~~~a~---~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~~---~~~~~~~~~~~  227 (353)
T 4dup_A          167 EGESVL-IHGGT------SGIGTTAIQLAR---AFGAEVYATAGSTGKCEACE-RL-----GAKRG---INYRSEDFAAV  227 (353)
T ss_dssp             TTCEEE-ESSTT------SHHHHHHHHHHH---HTTCEEEEEESSHHHHHHHH-HH-----TCSEE---EETTTSCHHHH
T ss_pred             CCCEEE-EEcCC------CHHHHHHHHHHH---HcCCEEEEEeCCHHHHHHHH-hc-----CCCEE---EeCCchHHHHH
Confidence            478888 99999      999999966655   4455555  47877765443 23     22222   35555443333


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +. ++.  .+.+|++|+|+|.
T Consensus       228 ~~-~~~--~~g~Dvvid~~g~  245 (353)
T 4dup_A          228 IK-AET--GQGVDIILDMIGA  245 (353)
T ss_dssp             HH-HHH--SSCEEEEEESCCG
T ss_pred             HH-HHh--CCCceEEEECCCH
Confidence            33 332  3579999999984

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.67  E-value=0.0025  Score=56.19  Aligned_cols=75  Identities=9%  Similarity=0.048  Sum_probs=45.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCH---HHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCW---DKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~---~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      .+++|++++ |+|+       +|+|..++..+..+   |+.|+  .++.   ++.+. ++++     +.  ..+  | .+
T Consensus       177 ~~~~g~~Vl-V~Ga-------G~vG~~~~q~a~~~---Ga~Vi~~~~~~~~~~~~~~-~~~~-----ga--~~v--~-~~  234 (366)
T 2cdc_A          177 GTLNCRKVL-VVGT-------GPIGVLFTLLFRTY---GLEVWMANRREPTEVEQTV-IEET-----KT--NYY--N-SS  234 (366)
T ss_dssp             SSSTTCEEE-EESC-------HHHHHHHHHHHHHH---TCEEEEEESSCCCHHHHHH-HHHH-----TC--EEE--E-CT
T ss_pred             ccCCCCEEE-EECC-------CHHHHHHHHHHHhC---CCEEEEEeCCccchHHHHH-HHHh-----CC--cee--c-hH
Confidence            356699999 9998       79999997665544   44554  4665   55533 3333     22  223  5 44


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                       +-.+.+ .+.  . +.+|++|+++|.
T Consensus       235 -~~~~~~-~~~--~-~~~d~vid~~g~  256 (366)
T 2cdc_A          235 -NGYDKL-KDS--V-GKFDVIIDATGA  256 (366)
T ss_dssp             -TCSHHH-HHH--H-CCEEEEEECCCC
T ss_pred             -HHHHHH-HHh--C-CCCCEEEECCCC
Confidence             222222 221  2 579999999985

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.62  E-value=0.0095  Score=52.41  Aligned_cols=101  Identities=14%  Similarity=0.055  Sum_probs=60.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+||+      +|+|..++..+..   .|+.|+  .++.++.+.+.+ +     +....   .|..+. ++.+
T Consensus       163 ~g~~Vl-V~Ga~------G~iG~~~~q~a~~---~Ga~Vi~~~~~~~~~~~~~~-~-----Ga~~~---~~~~~~-~~~~  222 (362)
T 2c0c_A          163 EGKKVL-VTAAA------GGTGQFAMQLSKK---AKCHVIGTCSSDEKSAFLKS-L-----GCDRP---INYKTE-PVGT  222 (362)
T ss_dssp             TTCEEE-ETTTT------BTTHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH-T-----TCSEE---EETTTS-CHHH
T ss_pred             CCCEEE-EeCCC------cHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHH-c-----CCcEE---EecCCh-hHHH
Confidence            478888 99999      9999999666554   455554  477766654332 2     22222   244432 2333


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      .+.+..  .+.+|++|+|+|..                        ..+.++..++.  .  |++|.+++...
T Consensus       223 ~~~~~~--~~g~D~vid~~g~~------------------------~~~~~~~~l~~--~--G~iv~~g~~~~  265 (362)
T 2c0c_A          223 VLKQEY--PEGVDVVYESVGGA------------------------MFDLAVDALAT--K--GRLIVIGFISG  265 (362)
T ss_dssp             HHHHHC--TTCEEEEEECSCTH------------------------HHHHHHHHEEE--E--EEEEECCCGGG
T ss_pred             HHHHhc--CCCCCEEEECCCHH------------------------HHHHHHHHHhc--C--CEEEEEeCCCC
Confidence            333321  13699999999820                        12344444543  3  89999988643

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.49  E-value=0.0097  Score=52.01  Aligned_cols=76  Identities=12%  Similarity=-0.103  Sum_probs=45.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ |+||+      +|+|..++..+..+   |+.|+  .++.++.+.+. ++     +....   .|..+.+..+.+.
T Consensus       166 ~~vl-i~gg~------g~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~-~~-----Ga~~~---~~~~~~~~~~~v~  226 (349)
T 3pi7_A          166 KAFV-MTAGA------SQLCKLIIGLAKEE---GFRPIVTVRRDEQIALLK-DI-----GAAHV---LNEKAPDFEATLR  226 (349)
T ss_dssp             SEEE-ESSTT------SHHHHHHHHHHHHH---TCEEEEEESCGGGHHHHH-HH-----TCSEE---EETTSTTHHHHHH
T ss_pred             CEEE-EeCCC------cHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHH-Hc-----CCCEE---EECCcHHHHHHHH
Confidence            6777 99999      99999997765544   44554  46776655443 23     22222   3444433333332


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      +....  ..+|++|.|+|.
T Consensus       227 ~~~~~--~g~D~vid~~g~  243 (349)
T 3pi7_A          227 EVMKA--EQPRIFLDAVTG  243 (349)
T ss_dssp             HHHHH--HCCCEEEESSCH
T ss_pred             HHhcC--CCCcEEEECCCC
Confidence            22211  269999999984

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.43  E-value=0.0079  Score=51.03  Aligned_cols=74  Identities=12%  Similarity=0.171  Sum_probs=50.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ |+|+       +|+|+++   +..|...|+   .|+.|+.++++++++++....   .+.....     +
T Consensus       122 ~~l~~k~vl-vlGa-------Gg~g~ai---a~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~~~-----~  182 (281)
T 3o8q_A          122 VLLKGATIL-LIGA-------GGAARGV---LKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQAF-----E  182 (281)
T ss_dssp             CCCTTCEEE-EECC-------SHHHHHH---HHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEEEG-----G
T ss_pred             CCccCCEEE-EECc-------hHHHHHH---HHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEeeH-----H
Confidence            467899999 9998       7999999   555556664   345699999999998886531   3443322     1


Q ss_pred             HHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      ++.          ...|+||++....
T Consensus       183 ~l~----------~~aDiIInaTp~g  198 (281)
T 3o8q_A          183 QLK----------QSYDVIINSTSAS  198 (281)
T ss_dssp             GCC----------SCEEEEEECSCCC
T ss_pred             Hhc----------CCCCEEEEcCcCC
Confidence            110          3689999986553

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.36  E-value=0.0068  Score=52.42  Aligned_cols=78  Identities=14%  Similarity=0.087  Sum_probs=47.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+||+      +|+|..++..+..+   |+.|+  .++.++.+.+. ++     +....   .|.++.+..+.
T Consensus       140 ~g~~Vl-V~Ga~------g~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~-~~-----Ga~~~---~~~~~~~~~~~  200 (325)
T 3jyn_A          140 PGEIIL-FHAAA------GGVGSLACQWAKAL---GAKLIGTVSSPEKAAHAK-AL-----GAWET---IDYSHEDVAKR  200 (325)
T ss_dssp             TTCEEE-ESSTT------SHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHH-HH-----TCSEE---EETTTSCHHHH
T ss_pred             CCCEEE-EEcCC------cHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHH-Hc-----CCCEE---EeCCCccHHHH
Confidence            478888 99999      99999997665544   44554  47777766443 33     22222   35555433333


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+.. . ...+|++|+|+|.
T Consensus       201 ~~~~~-~-~~g~Dvvid~~g~  219 (325)
T 3jyn_A          201 VLELT-D-GKKCPVVYDGVGQ  219 (325)
T ss_dssp             HHHHT-T-TCCEEEEEESSCG
T ss_pred             HHHHh-C-CCCceEEEECCCh
Confidence            32222 1 1269999999984

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=96.35  E-value=0.012  Score=53.40  Aligned_cols=83  Identities=16%  Similarity=0.129  Sum_probs=53.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEE--cc-------
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAME--LD-------   92 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~--~D-------   92 (292)
                      .|++++ |+|++      +|+|...+..+.   ..|+.++  .++.++++.+ +++     +....+-.  .|       
T Consensus       228 ~g~~Vl-V~Gas------G~vG~~avqlak---~~Ga~vi~~~~~~~~~~~~-~~l-----Ga~~vi~~~~~d~~~~~~~  291 (456)
T 3krt_A          228 QGDNVL-IWGAS------GGLGSYATQFAL---AGGANPICVVSSPQKAEIC-RAM-----GAEAIIDRNAEGYRFWKDE  291 (456)
T ss_dssp             TTCEEE-ETTTT------SHHHHHHHHHHH---HTTCEEEEEESSHHHHHHH-HHH-----TCCEEEETTTTTCCSEEET
T ss_pred             CCCEEE-EECCC------CHHHHHHHHHHH---HcCCeEEEEECCHHHHHHH-Hhh-----CCcEEEecCcCcccccccc
Confidence            478888 99999      999999966654   3455544  4777776544 333     22222211  11       


Q ss_pred             -CCChHHHHHHHHHHHHhCC--CccEEEEcccc
Q psy4251          93 -LCRLKSVKKFAEEYQKKFR--SLNILVLNAGV  122 (292)
Q Consensus        93 -ls~~~~v~~~~~~~~~~~~--~id~lI~nAg~  122 (292)
                       .++.++++++.+++.+..+  .+|++|.++|.
T Consensus       292 ~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~  324 (456)
T 3krt_A          292 NTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR  324 (456)
T ss_dssp             TEECHHHHHHHHHHHHHHHTSCCEEEEEECSCH
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCcEEEEcCCc
Confidence             2456667777777776543  79999999983

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.34  E-value=0.0033  Score=53.85  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=48.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++.|++++ |.|+       +|+|+++   +..|...|+ .|  +.|+.++++++++++....  ..  +     .+.++
T Consensus       138 ~l~~~~vl-VlGa-------Gg~g~ai---a~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~--~~--~-----~~~~~  197 (297)
T 2egg_A          138 TLDGKRIL-VIGA-------GGGARGI---YFSLLSTAAERIDMANRTVEKAERLVREGDERR--SA--Y-----FSLAE  197 (297)
T ss_dssp             CCTTCEEE-EECC-------SHHHHHH---HHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSS--CC--E-----ECHHH
T ss_pred             CCCCCEEE-EECc-------HHHHHHH---HHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhcc--Cc--e-----eeHHH
Confidence            57789999 9998       7999999   555556665 44  4589888888776653210  01  1     12222


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                             +.+.....|+||++.+..
T Consensus       198 -------~~~~~~~aDivIn~t~~~  215 (297)
T 2egg_A          198 -------AETRLAEYDIIINTTSVG  215 (297)
T ss_dssp             -------HHHTGGGCSEEEECSCTT
T ss_pred             -------HHhhhccCCEEEECCCCC
Confidence                   222234689999999865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.30  E-value=0.018  Score=50.06  Aligned_cols=99  Identities=15%  Similarity=0.025  Sum_probs=59.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|+       +|+|..++..+.   ..|+.|++  ++.++.+.+. ++     +...   .+|.++.+ +.+
T Consensus       164 ~g~~Vl-V~Ga-------G~vG~~~~~~a~---~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~---~~d~~~~~-~~~  222 (339)
T 1rjw_A          164 PGEWVA-IYGI-------GGLGHVAVQYAK---AMGLNVVAVDIGDEKLELAK-EL-----GADL---VVNPLKED-AAK  222 (339)
T ss_dssp             TTCEEE-EECC-------STTHHHHHHHHH---HTTCEEEEECSCHHHHHHHH-HT-----TCSE---EECTTTSC-HHH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHH---HcCCEEEEEeCCHHHHHHHH-HC-----CCCE---EecCCCcc-HHH
Confidence            478888 9999       579999966654   34556553  6777765432 22     2222   24666543 222


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      .+.++.   +.+|++|+++|...                       .++..+..++.  .  |++|.+++..
T Consensus       223 ~~~~~~---~~~d~vid~~g~~~-----------------------~~~~~~~~l~~--~--G~~v~~g~~~  264 (339)
T 1rjw_A          223 FMKEKV---GGVHAAVVTAVSKP-----------------------AFQSAYNSIRR--G--GACVLVGLPP  264 (339)
T ss_dssp             HHHHHH---SSEEEEEESSCCHH-----------------------HHHHHHHHEEE--E--EEEEECCCCS
T ss_pred             HHHHHh---CCCCEEEECCCCHH-----------------------HHHHHHHHhhc--C--CEEEEecccC
Confidence            333332   57999999998420                       23444445543  3  8999988754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.14  E-value=0.0082  Score=50.07  Aligned_cols=82  Identities=12%  Similarity=0.149  Sum_probs=57.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC-------------------HHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC-------------------WDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~-------------------~~~~~~~~~~l~   78 (292)
                      ..|++++++ |.|+       +|+|.++   +..|+..|+   +|+.++                   ..|++.++++++
T Consensus        24 ~~l~~~~Vl-vvG~-------GglG~~v---a~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~   92 (251)
T 1zud_1           24 QKLLDSQVL-IIGL-------GGLGTPA---ALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLT   92 (251)
T ss_dssp             HHHHTCEEE-EECC-------STTHHHH---HHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHH
T ss_pred             HHHhcCcEE-EEcc-------CHHHHHH---HHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHH
Confidence            346788899 9999       7999999   444555553   444222                   268899999999


Q ss_pred             hhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+|..++..+..+++. +.+.++++       ..|+||.+..
T Consensus        93 ~~np~~~v~~~~~~~~~-~~~~~~~~-------~~DvVi~~~d  127 (251)
T 1zud_1           93 QLNPDIQLTALQQRLTG-EALKDAVA-------RADVVLDCTD  127 (251)
T ss_dssp             HHCTTSEEEEECSCCCH-HHHHHHHH-------HCSEEEECCS
T ss_pred             HHCCCCEEEEEeccCCH-HHHHHHHh-------cCCEEEECCC
Confidence            99888888888777754 34444332       3699998644

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.14  E-value=0.0083  Score=52.23  Aligned_cols=78  Identities=8%  Similarity=0.026  Sum_probs=46.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +|||..++..+..+   |+.|+  .++.++.+.+. ++     +....   .|..+.+..+.
T Consensus       144 ~g~~Vl-V~Ga~------g~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~-~l-----ga~~~---~~~~~~~~~~~  204 (340)
T 3gms_A          144 RNDVLL-VNACG------SAIGHLFAQLSQIL---NFRLIAVTRNNKHTEELL-RL-----GAAYV---IDTSTAPLYET  204 (340)
T ss_dssp             TTCEEE-ESSTT------SHHHHHHHHHHHHH---TCEEEEEESSSTTHHHHH-HH-----TCSEE---EETTTSCHHHH
T ss_pred             CCCEEE-EeCCc------cHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHH-hC-----CCcEE---EeCCcccHHHH
Confidence            478888 99998      99999997665543   45554  46666654433 23     22222   35554333322


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +. ++.. ...+|++|+|+|.
T Consensus       205 ~~-~~~~-~~g~Dvvid~~g~  223 (340)
T 3gms_A          205 VM-ELTN-GIGADAAIDSIGG  223 (340)
T ss_dssp             HH-HHTT-TSCEEEEEESSCH
T ss_pred             HH-HHhC-CCCCcEEEECCCC
Confidence            22 2211 1269999999985

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.98  E-value=0.018  Score=50.70  Aligned_cols=78  Identities=5%  Similarity=-0.033  Sum_probs=48.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .+++++++ |+|+       +|+|++++..+..++. .+.++.|+.++++.+.+....     .+..   +..+.+++.+
T Consensus       164 ~l~~~~Vl-ViGa-------GgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~-----~~~~---~~~~~~~~~~  226 (361)
T 1pjc_A          164 GVKPGKVV-ILGG-------GVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVEL---LYSNSAEIET  226 (361)
T ss_dssp             TBCCCEEE-EECC-------SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEE---EECCHHHHHH
T ss_pred             CCCCCEEE-EECC-------CHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc-----eeEe---eeCCHHHHHH
Confidence            46778888 9998       7999999666554432 233345888888776554321     2222   2233443332


Q ss_pred             HHHHHHHhCCCccEEEEccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~  123 (292)
                         .+    ...|++|++++..
T Consensus       227 ---~~----~~~DvVI~~~~~~  241 (361)
T 1pjc_A          227 ---AV----AEADLLIGAVLVP  241 (361)
T ss_dssp             ---HH----HTCSEEEECCCCT
T ss_pred             ---HH----cCCCEEEECCCcC
Confidence               22    2589999999864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.90  E-value=0.0086  Score=52.78  Aligned_cols=73  Identities=12%  Similarity=0.028  Sum_probs=45.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|+       +|+|..++..+..   .|+.|+  .++.++.+.+.+++     +...   ..|..+.+.+. 
T Consensus       187 ~g~~Vl-V~Ga-------G~vG~~~~q~a~~---~Ga~Vi~~~~~~~~~~~~~~~l-----Ga~~---v~~~~~~~~~~-  246 (366)
T 1yqd_A          187 PGKHIG-IVGL-------GGLGHVAVKFAKA---FGSKVTVISTSPSKKEEALKNF-----GADS---FLVSRDQEQMQ-  246 (366)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHTS-----CCSE---EEETTCHHHHH-
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHhc-----CCce---EEeccCHHHHH-
Confidence            588898 8995       8999999666554   445554  46766665443222     2222   23555543322 


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                            +..+.+|++|.++|.
T Consensus       247 ------~~~~~~D~vid~~g~  261 (366)
T 1yqd_A          247 ------AAAGTLDGIIDTVSA  261 (366)
T ss_dssp             ------HTTTCEEEEEECCSS
T ss_pred             ------HhhCCCCEEEECCCc
Confidence                  223579999999985

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=95.85  E-value=0.056  Score=46.51  Aligned_cols=118  Identities=7%  Similarity=-0.003  Sum_probs=68.6

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EE--EEc--CHHHHHHHHHHHHhhCC--CCceEEEEccCCChHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LF--YQN--CWDKANDAISKILTEKP--SAQCIAMELDLCRLKS   98 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v--~~r--~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~   98 (292)
                      +++ ||||+      +.+|..+   +..+...+.  .+  +.+  +.++++....++.+..+  +..+.+...|    ++
T Consensus         2 KI~-V~Gaa------G~vG~~l---~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~   67 (313)
T 1hye_A            2 KVT-IIGAS------GRVGSAT---ALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DE   67 (313)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TT
T ss_pred             EEE-EECCC------ChhHHHH---HHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cc
Confidence            466 99999      9999999   545555552  23  345  66656555555543211  1122222211    01


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                             +.+.+...|+||++||......    ......+.+|+.....+++.+..+-    .  +.|+++|.....
T Consensus        68 -------l~~al~gaD~Vi~~Ag~~~~~g----~~r~dl~~~N~~i~~~i~~~i~~~~----~--~~vlv~SNPv~~  127 (313)
T 1hye_A           68 -------NLRIIDESDVVIITSGVPRKEG----MSRMDLAKTNAKIVGKYAKKIAEIC----D--TKIFVITNPVDV  127 (313)
T ss_dssp             -------CGGGGTTCSEEEECCSCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHHC----C--CEEEECSSSHHH
T ss_pred             -------hHHHhCCCCEEEECCCCCCCCC----CcHHHHHHHHHHHHHHHHHHHHHhC----C--eEEEEecCcHHH
Confidence                   1112346899999999753221    1234568888888888888776542    3  788888776543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.84  E-value=0.088  Score=45.53  Aligned_cols=118  Identities=12%  Similarity=0.093  Sum_probs=64.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .++. ||||+      +.+|..+   +..|...|  ..|.  .++.+  +....++.+.....++..    +++..+..+
T Consensus         9 mKI~-ViGAa------G~VG~~l---a~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~----~~~t~d~~~   72 (326)
T 1smk_A            9 FKVA-ILGAA------GGIGQPL---AMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRG----FLGQQQLEA   72 (326)
T ss_dssp             EEEE-EETTT------STTHHHH---HHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEE----EESHHHHHH
T ss_pred             CEEE-EECCC------ChHHHHH---HHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEE----EeCCCCHHH
Confidence            4677 99988      8999999   44455666  4444  34544  333444544311112222    122223322


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      .   +    ...|++|++||...... .+.   ...+.+|+-+...+++.+...-   +.  +.|+++|.....
T Consensus        73 a---l----~gaDvVi~~ag~~~~~g-~~r---~dl~~~N~~~~~~i~~~i~~~~---p~--~~viv~SNPv~~  130 (326)
T 1smk_A           73 A---L----TGMDLIIVPAGVPRKPG-MTR---DDLFKINAGIVKTLCEGIAKCC---PR--AIVNLISNPVNS  130 (326)
T ss_dssp             H---H----TTCSEEEECCCCCCCSS-CCC---SHHHHHHHHHHHHHHHHHHHHC---TT--SEEEECCSSHHH
T ss_pred             H---c----CCCCEEEEcCCcCCCCC-CCH---HHHHHHHHHHHHHHHHHHHhhC---CC--eEEEEECCchHH
Confidence            2   2    35899999999753222 222   3447778777777777665432   33  566665554433

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.82  E-value=0.013  Score=51.11  Aligned_cols=75  Identities=11%  Similarity=0.066  Sum_probs=44.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +|||..++..+.   ..|+.|+  .++.++.+.+. ++     +... ++  |..  +++. 
T Consensus       159 ~g~~Vl-V~Gas------g~iG~~~~~~a~---~~Ga~Vi~~~~~~~~~~~~~-~~-----ga~~-v~--~~~--~~~~-  216 (342)
T 4eye_A          159 AGETVL-VLGAA------GGIGTAAIQIAK---GMGAKVIAVVNRTAATEFVK-SV-----GADI-VL--PLE--EGWA-  216 (342)
T ss_dssp             TTCEEE-ESSTT------SHHHHHHHHHHH---HTTCEEEEEESSGGGHHHHH-HH-----TCSE-EE--ESS--TTHH-
T ss_pred             CCCEEE-EECCC------CHHHHHHHHHHH---HcCCEEEEEeCCHHHHHHHH-hc-----CCcE-Ee--cCc--hhHH-
Confidence            478888 99999      999999966655   3455555  46666654332 23     2222 22  333  2222 


Q ss_pred             HHHHHHHhCC--CccEEEEcccc
Q psy4251         102 FAEEYQKKFR--SLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~--~id~lI~nAg~  122 (292)
                        +++.+..+  .+|++|+|+|.
T Consensus       217 --~~v~~~~~~~g~Dvvid~~g~  237 (342)
T 4eye_A          217 --KAVREATGGAGVDMVVDPIGG  237 (342)
T ss_dssp             --HHHHHHTTTSCEEEEEESCC-
T ss_pred             --HHHHHHhCCCCceEEEECCch
Confidence              33333222  69999999994

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.70  E-value=0.018  Score=50.71  Aligned_cols=78  Identities=6%  Similarity=0.055  Sum_probs=47.9

Q ss_pred             CCCCCCCc--eEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          19 PASTYNGC--LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        19 ~~~~l~g~--~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      +..+.+||  .++ |.||       +++|+.+++.   |.+. .++++.++.++++++.         ..+..+++|++|
T Consensus         8 ~~~~~~g~~mkil-vlGa-------G~vG~~~~~~---L~~~~~v~~~~~~~~~~~~~~---------~~~~~~~~d~~d   67 (365)
T 3abi_A            8 HHHHIEGRHMKVL-ILGA-------GNIGRAIAWD---LKDEFDVYIGDVNNENLEKVK---------EFATPLKVDASN   67 (365)
T ss_dssp             --------CCEEE-EECC-------SHHHHHHHHH---HTTTSEEEEEESCHHHHHHHT---------TTSEEEECCTTC
T ss_pred             ccccccCCccEEE-EECC-------CHHHHHHHHH---HhcCCCeEEEEcCHHHHHHHh---------ccCCcEEEecCC
Confidence            44556666  466 7787       7899999544   4333 2344458877765432         245668899999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      .+++.++++       +.|+||++++..
T Consensus        68 ~~~l~~~~~-------~~DvVi~~~p~~   88 (365)
T 3abi_A           68 FDKLVEVMK-------EFELVIGALPGF   88 (365)
T ss_dssp             HHHHHHHHT-------TCSEEEECCCGG
T ss_pred             HHHHHHHHh-------CCCEEEEecCCc
Confidence            988777643       469999998753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.67  E-value=0.015  Score=50.48  Aligned_cols=64  Identities=14%  Similarity=0.037  Sum_probs=45.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKP   82 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~   82 (292)
                      .|++++++ |.|+       +|+|.++++.+...+-..++|+.++                   ..|++.+++.+++.+|
T Consensus        31 kL~~~~Vl-IvGa-------GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP  102 (340)
T 3rui_A           31 IIKNTKVL-LLGA-------GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP  102 (340)
T ss_dssp             HHHTCEEE-EECC-------SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCT
T ss_pred             HHhCCEEE-EECC-------CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCC
Confidence            46788999 9999       7999999555433322223344332                   2588899999999998


Q ss_pred             CCceEEEEccC
Q psy4251          83 SAQCIAMELDL   93 (292)
Q Consensus        83 ~~~~~~~~~Dl   93 (292)
                      ..++..+..++
T Consensus       103 ~v~v~~~~~~i  113 (340)
T 3rui_A          103 LMDATGVKLSI  113 (340)
T ss_dssp             TCEEEEECCCC
T ss_pred             CCEEEEEeccc
Confidence            88888887665

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.66  E-value=0.06  Score=39.69  Aligned_cols=73  Identities=14%  Similarity=0.151  Sum_probs=46.0

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +++++ |+|+       +.+|..++   ..|...|+.|+  .++.++.+...+    ..   .+.++..|.++.+.+.+ 
T Consensus         4 ~m~i~-IiG~-------G~iG~~~a---~~L~~~g~~v~~~d~~~~~~~~~~~----~~---~~~~~~~d~~~~~~l~~-   64 (140)
T 1lss_A            4 GMYII-IAGI-------GRVGYTLA---KSLSEKGHDIVLIDIDKDICKKASA----EI---DALVINGDCTKIKTLED-   64 (140)
T ss_dssp             -CEEE-EECC-------SHHHHHHH---HHHHHTTCEEEEEESCHHHHHHHHH----HC---SSEEEESCTTSHHHHHH-
T ss_pred             CCEEE-EECC-------CHHHHHHH---HHHHhCCCeEEEEECCHHHHHHHHH----hc---CcEEEEcCCCCHHHHHH-
Confidence            35677 7787       79999994   44555665554  477766554332    21   34567889888765432 


Q ss_pred             HHHHHHhCCCccEEEEccc
Q psy4251         103 AEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg  121 (292)
                           ......|++|.+.+
T Consensus        65 -----~~~~~~d~vi~~~~   78 (140)
T 1lss_A           65 -----AGIEDADMYIAVTG   78 (140)
T ss_dssp             -----TTTTTCSEEEECCS
T ss_pred             -----cCcccCCEEEEeeC
Confidence                 11346899999865

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.66  E-value=0.012  Score=49.76  Aligned_cols=73  Identities=12%  Similarity=0.060  Sum_probs=49.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ |+|+       +|+|++++..   |...|+   .|+.|+.++++++++++..    ..+...  ++.+..
T Consensus       116 ~~l~~k~~l-vlGa-------Gg~~~aia~~---L~~~G~~~v~i~~R~~~~a~~la~~~~~----~~~~~~--~~~~l~  178 (272)
T 3pwz_A          116 EPLRNRRVL-LLGA-------GGAVRGALLP---FLQAGPSELVIANRDMAKALALRNELDH----SRLRIS--RYEALE  178 (272)
T ss_dssp             CCCTTSEEE-EECC-------SHHHHHHHHH---HHHTCCSEEEEECSCHHHHHHHHHHHCC----TTEEEE--CSGGGT
T ss_pred             CCccCCEEE-EECc-------cHHHHHHHHH---HHHcCCCEEEEEeCCHHHHHHHHHHhcc----CCeeEe--eHHHhc
Confidence            568899999 9998       7999999544   555553   4456999999998887743    133333  222211


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                                .  ...|+|||+...
T Consensus       179 ----------~--~~~DivInaTp~  191 (272)
T 3pwz_A          179 ----------G--QSFDIVVNATSA  191 (272)
T ss_dssp             ----------T--CCCSEEEECSSG
T ss_pred             ----------c--cCCCEEEECCCC
Confidence                      1  368999998654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=95.62  E-value=0.084  Score=45.16  Aligned_cols=115  Identities=9%  Similarity=-0.049  Sum_probs=63.6

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EE--EEc--CHHHHHHHHHHHHhhCC-CCceEEEEccCCChHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LF--YQN--CWDKANDAISKILTEKP-SAQCIAMELDLCRLKSV   99 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v--~~r--~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v   99 (292)
                      ++. ||||+      +.+|..++..   +...+.  .+  +.+  +.++++....++.+... ...+.+.. |  +.+. 
T Consensus         2 KI~-IiGAa------G~vG~~l~~~---L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~~a-   67 (303)
T 1o6z_A            2 KVS-VVGAA------GTVGAAAGYN---IALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GYED-   67 (303)
T ss_dssp             EEE-EETTT------SHHHHHHHHH---HHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CGGG-
T ss_pred             EEE-EECCC------ChHHHHHHHH---HHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CHHH-
Confidence            466 99988      9999999544   444442  23  335  66666655556654311 12233222 2  2221 


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                                +...|++|++||....+.+ +   ....+..|+-....+.+.+..+   .+.  +.|+++|....
T Consensus        68 ----------~~~aDvVi~~ag~~~~~g~-~---r~dl~~~N~~i~~~i~~~i~~~---~p~--~~viv~SNPv~  123 (303)
T 1o6z_A           68 ----------TAGSDVVVITAGIPRQPGQ-T---RIDLAGDNAPIMEDIQSSLDEH---NDD--YISLTTSNPVD  123 (303)
T ss_dssp             ----------GTTCSEEEECCCCCCCTTC-C---HHHHHHHHHHHHHHHHHHHHTT---CSC--CEEEECCSSHH
T ss_pred             ----------hCCCCEEEEcCCCCCCCCC-C---HHHHHHHHHHHHHHHHHHHHHH---CCC--cEEEEeCChHH
Confidence                      2468999999997532211 2   2345777777666666655432   233  56666555443

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.52  E-value=0.031  Score=49.50  Aligned_cols=76  Identities=5%  Similarity=-0.045  Sum_probs=49.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .+.|++++ |+|+       ++||..+++.+.   ..|+.|+  .++.++++.+.+.+     +..+   .+|.++.+++
T Consensus       165 ~l~g~~V~-ViG~-------G~iG~~~a~~a~---~~Ga~V~~~d~~~~~l~~~~~~~-----g~~~---~~~~~~~~~l  225 (377)
T 2vhw_A          165 GVEPADVV-VIGA-------GTAGYNAARIAN---GMGATVTVLDINIDKLRQLDAEF-----CGRI---HTRYSSAYEL  225 (377)
T ss_dssp             TBCCCEEE-EECC-------SHHHHHHHHHHH---HTTCEEEEEESCHHHHHHHHHHT-----TTSS---EEEECCHHHH
T ss_pred             CCCCCEEE-EECC-------CHHHHHHHHHHH---hCCCEEEEEeCCHHHHHHHHHhc-----CCee---EeccCCHHHH
Confidence            58899999 9998       799999966655   4455554  47887776654433     2222   2334455555


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      .+++.       ..|++|++++..
T Consensus       226 ~~~l~-------~aDvVi~~~~~p  242 (377)
T 2vhw_A          226 EGAVK-------RADLVIGAVLVP  242 (377)
T ss_dssp             HHHHH-------HCSEEEECCCCT
T ss_pred             HHHHc-------CCCEEEECCCcC
Confidence            44432       479999998864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.43  E-value=0.32  Score=42.06  Aligned_cols=132  Identities=10%  Similarity=0.045  Sum_probs=75.0

Q ss_pred             HHhhcccCCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EE--EEcCHHHHHHHHHHHHhh--CC
Q psy4251           9 KQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LF--YQNCWDKANDAISKILTE--KP   82 (292)
Q Consensus         9 ~~~~~~~~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v--~~r~~~~~~~~~~~l~~~--~~   82 (292)
                      +..++.+...+ .....+.+. |+|+       +++|.++   +..++..+.  .|  +.++.++++..+.+|.+.  ++
T Consensus         4 ~~~~~~~~~~~-~~~~~~kV~-ViGa-------G~vG~~~---a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~   71 (331)
T 4aj2_A            4 KDQLIVNLLKE-EQVPQNKIT-VVGV-------GAVGMAC---AISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFL   71 (331)
T ss_dssp             HHHHEEECCC----CCSSEEE-EECC-------SHHHHHH---HHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGC
T ss_pred             hhhhhhccccc-ccCCCCEEE-EECC-------CHHHHHH---HHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhcc
Confidence            34566555544 445667788 8887       7899999   444555554  33  347788888888888754  22


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCC
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL  162 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~  162 (292)
                      .. ...+..  +|.+           ....-|++|.+||....+. ++.   ...++.|.--...+.+.+..+   .+. 
T Consensus        72 ~~-~~i~~~--~d~~-----------~~~~aDiVvi~aG~~~kpG-~tR---~dL~~~N~~I~~~i~~~i~~~---~p~-  129 (331)
T 4aj2_A           72 KT-PKIVSS--KDYS-----------VTANSKLVIITAGARQQEG-ESR---LNLVQRNVNIFKFIIPNVVKY---SPQ-  129 (331)
T ss_dssp             SC-CEEEEC--SSGG-----------GGTTEEEEEECCSCCCCTT-CCG---GGGHHHHHHHHHHHHHHHHHH---CTT-
T ss_pred             CC-CeEEEc--CCHH-----------HhCCCCEEEEccCCCCCCC-ccH---HHHHHHHHHHHHHHHHHHHHH---CCC-
Confidence            11 122221  1221           1246899999999754322 232   345555554444444444332   244 


Q ss_pred             CcEEEEEcCcccc
Q psy4251         163 FARVVVVSSESHR  175 (292)
Q Consensus       163 ~~~iV~vsS~~~~  175 (292)
                       +.++++|.....
T Consensus       130 -a~vlvvtNPvdi  141 (331)
T 4aj2_A          130 -CKLLIVSNPVDI  141 (331)
T ss_dssp             -CEEEECSSSHHH
T ss_pred             -eEEEEecChHHH
Confidence             888888877543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.40  E-value=0.063  Score=46.74  Aligned_cols=102  Identities=14%  Similarity=0.010  Sum_probs=58.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|++++ |+|+       +|+|..++..+..++....+++.++.++.+.+. ++     +...   ..|..+.+ +.   
T Consensus       167 ~g~~Vl-V~Ga-------G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~-----Ga~~---~~~~~~~~-~~---  225 (348)
T 2d8a_A          167 SGKSVL-ITGA-------GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KV-----GADY---VINPFEED-VV---  225 (348)
T ss_dssp             TTCCEE-EECC-------SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HH-----TCSE---EECTTTSC-HH---
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-----CCCE---EECCCCcC-HH---
Confidence            688998 9998       799999966655432112233347776665433 33     2221   13554432 22   


Q ss_pred             HHHHHhC--CCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         104 EEYQKKF--RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       104 ~~~~~~~--~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +++.+..  ..+|++|.++|..                       ..++.+++.++.  .  |++|.+++..
T Consensus       226 ~~v~~~~~g~g~D~vid~~g~~-----------------------~~~~~~~~~l~~--~--G~iv~~g~~~  270 (348)
T 2d8a_A          226 KEVMDITDGNGVDVFLEFSGAP-----------------------KALEQGLQAVTP--A--GRVSLLGLYP  270 (348)
T ss_dssp             HHHHHHTTTSCEEEEEECSCCH-----------------------HHHHHHHHHEEE--E--EEEEECCCCS
T ss_pred             HHHHHHcCCCCCCEEEECCCCH-----------------------HHHHHHHHHHhc--C--CEEEEEccCC
Confidence            2333222  2699999999841                       023444555543  3  8999998754

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.32  E-value=0.037  Score=48.19  Aligned_cols=75  Identities=11%  Similarity=0.151  Sum_probs=45.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      .|++++ |+||+      +|+|..++..+.   ..|+.|++ ++.++.+.+ +++     +...    +| .+. +..+.
T Consensus       150 ~g~~Vl-V~Ga~------g~iG~~~~q~a~---~~Ga~Vi~~~~~~~~~~~-~~l-----Ga~~----i~-~~~-~~~~~  207 (343)
T 3gaz_A          150 DGQTVL-IQGGG------GGVGHVAIQIAL---ARGARVFATARGSDLEYV-RDL-----GATP----ID-ASR-EPEDY  207 (343)
T ss_dssp             TTCEEE-EETTT------SHHHHHHHHHHH---HTTCEEEEEECHHHHHHH-HHH-----TSEE----EE-TTS-CHHHH
T ss_pred             CCCEEE-EecCC------CHHHHHHHHHHH---HCCCEEEEEeCHHHHHHH-HHc-----CCCE----ec-cCC-CHHHH
Confidence            478888 99998      999999966655   34555553 666665433 333     3322    44 332 33333


Q ss_pred             HHHHHHhCCCccEEEEccc
Q psy4251         103 AEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+... ...+|++|.|+|
T Consensus       208 ~~~~~~-~~g~D~vid~~g  225 (343)
T 3gaz_A          208 AAEHTA-GQGFDLVYDTLG  225 (343)
T ss_dssp             HHHHHT-TSCEEEEEESSC
T ss_pred             HHHHhc-CCCceEEEECCC
Confidence            333322 136999999998

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.29  E-value=0.022  Score=53.16  Aligned_cols=92  Identities=13%  Similarity=0.062  Sum_probs=58.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKP   82 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~   82 (292)
                      .|++.+|+ |.|+       +|+|.++|+.+...+-..++|+..+                   ..|++.+++.+++.+|
T Consensus       323 kL~~arVL-IVGa-------GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP  394 (615)
T 4gsl_A          323 IIKNTKVL-LLGA-------GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP  394 (615)
T ss_dssp             HHHTCEEE-EECC-------SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCT
T ss_pred             HHhCCeEE-EECC-------CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCC
Confidence            47788999 9999       7999999555443322223344332                   2588999999999999


Q ss_pred             CCceEEEEccC-------CChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          83 SAQCIAMELDL-------CRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        83 ~~~~~~~~~Dl-------s~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      ..++..+..++       ++.+....-.+.+.+.+...|+||.+..
T Consensus       395 ~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tD  440 (615)
T 4gsl_A          395 LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD  440 (615)
T ss_dssp             TCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCS
T ss_pred             CcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCC
Confidence            88888888766       2221111111112222235799998755

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.27  E-value=0.065  Score=46.63  Aligned_cols=76  Identities=8%  Similarity=0.013  Sum_probs=45.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+||+      +++|..++..+.   ..|+.|++  ++.++.+.+. ++     +....   .|-.+  +..+
T Consensus       150 ~g~~Vl-V~gg~------G~vG~~a~qla~---~~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~v---i~~~~--~~~~  208 (346)
T 3fbg_A          150 EGKTLL-IINGA------GGVGSIATQIAK---AYGLRVITTASRNETIEWTK-KM-----GADIV---LNHKE--SLLN  208 (346)
T ss_dssp             TTCEEE-EESTT------SHHHHHHHHHHH---HTTCEEEEECCSHHHHHHHH-HH-----TCSEE---ECTTS--CHHH
T ss_pred             CCCEEE-EEcCC------CHHHHHHHHHHH---HcCCEEEEEeCCHHHHHHHH-hc-----CCcEE---EECCc--cHHH
Confidence            588898 99988      999999966655   34555554  6666655433 23     22221   23332  2222


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.++  ..+.+|+++.|+|.
T Consensus       209 ~~~~~--~~~g~Dvv~d~~g~  227 (346)
T 3fbg_A          209 QFKTQ--GIELVDYVFCTFNT  227 (346)
T ss_dssp             HHHHH--TCCCEEEEEESSCH
T ss_pred             HHHHh--CCCCccEEEECCCc
Confidence            23333  22379999999884

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.21  E-value=0.036  Score=43.42  Aligned_cols=77  Identities=9%  Similarity=-0.021  Sum_probs=48.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++.+++++ |.|+       +.+|..+++.   |... |+.|  +.++.++.+.+.    +.    .+.++.+|.++.+
T Consensus        35 ~~~~~~~v~-IiG~-------G~~G~~~a~~---L~~~~g~~V~vid~~~~~~~~~~----~~----g~~~~~gd~~~~~   95 (183)
T 3c85_A           35 INPGHAQVL-ILGM-------GRIGTGAYDE---LRARYGKISLGIEIREEAAQQHR----SE----GRNVISGDATDPD   95 (183)
T ss_dssp             BCCTTCSEE-EECC-------SHHHHHHHHH---HHHHHCSCEEEEESCHHHHHHHH----HT----TCCEEECCTTCHH
T ss_pred             cCCCCCcEE-EECC-------CHHHHHHHHH---HHhccCCeEEEEECCHHHHHHHH----HC----CCCEEEcCCCCHH
Confidence            456677788 7786       7999999554   4455 5544  458887765533    22    2446778998876


Q ss_pred             HHHHHHHHHHHhCCCccEEEEccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      .+.++     ......|++|.+.+
T Consensus        96 ~l~~~-----~~~~~ad~vi~~~~  114 (183)
T 3c85_A           96 FWERI-----LDTGHVKLVLLAMP  114 (183)
T ss_dssp             HHHTB-----CSCCCCCEEEECCS
T ss_pred             HHHhc-----cCCCCCCEEEEeCC
Confidence            44321     01346899998765

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.08  E-value=0.11  Score=45.48  Aligned_cols=84  Identities=10%  Similarity=-0.087  Sum_probs=50.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|++++ |.|+       +|+|...+..+..++...++++.++.++.+.+. ++ .    ..+..+..|-.+.+++.+.+
T Consensus       179 ~g~~Vl-V~Ga-------G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-~----~~~~~~~~~~~~~~~~~~~v  244 (363)
T 3m6i_A          179 LGDPVL-ICGA-------GPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-C----PEVVTHKVERLSAEESAKKI  244 (363)
T ss_dssp             TTCCEE-EECC-------SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-C----TTCEEEECCSCCHHHHHHHH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-c----hhcccccccccchHHHHHHH
Confidence            478888 8887       799999977655442222333457777765443 33 2    24455556655555544443


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      .++-. ...+|+++.++|.
T Consensus       245 ~~~t~-g~g~Dvvid~~g~  262 (363)
T 3m6i_A          245 VESFG-GIEPAVALECTGV  262 (363)
T ss_dssp             HHHTS-SCCCSEEEECSCC
T ss_pred             HHHhC-CCCCCEEEECCCC
Confidence            33321 1269999999884

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.97  E-value=0.048  Score=47.79  Aligned_cols=85  Identities=12%  Similarity=0.147  Sum_probs=60.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEK   81 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~   81 (292)
                      ..|++++|+ |.|+       +|+|.++++.+...+-...+|+.++                   ..|++.+++.+.+.+
T Consensus       114 ~~L~~~~Vl-vvG~-------GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n  185 (353)
T 3h5n_A          114 DKLKNAKVV-ILGC-------GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRN  185 (353)
T ss_dssp             HHHHTCEEE-EECC-------SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred             HHHhCCeEE-EECC-------CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHC
Confidence            346678888 8898       7999999555443322224454443                   247888999999999


Q ss_pred             CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        82 ~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      |..++..+..++++..++.       . +...|+||.+..
T Consensus       186 p~v~v~~~~~~i~~~~~~~-------~-~~~~DlVvd~~D  217 (353)
T 3h5n_A          186 SEISVSEIALNINDYTDLH-------K-VPEADIWVVSAD  217 (353)
T ss_dssp             TTSEEEEEECCCCSGGGGG-------G-SCCCSEEEECCC
T ss_pred             CCCeEEEeecccCchhhhh-------H-hccCCEEEEecC
Confidence            9889999999988765322       2 457899998653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.94  E-value=0.2  Score=37.87  Aligned_cols=75  Identities=13%  Similarity=0.007  Sum_probs=47.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNC-WDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .++++ |.|+       +.+|..+++   .|...|+.|  +.++ .++.+...+..     ...+.++.+|.++++.+++
T Consensus         3 ~~~vl-I~G~-------G~vG~~la~---~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~   66 (153)
T 1id1_A            3 KDHFI-VCGH-------SILAINTIL---QLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKK   66 (153)
T ss_dssp             CSCEE-EECC-------SHHHHHHHH---HHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHH
T ss_pred             CCcEE-EECC-------CHHHHHHHH---HHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHH
Confidence            34566 7786       789999944   455556544  4576 55555544332     2247788999999876544


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      .      .....|++|.+.+
T Consensus        67 a------~i~~ad~vi~~~~   80 (153)
T 1id1_A           67 A------GIDRCRAILALSD   80 (153)
T ss_dssp             H------TTTTCSEEEECSS
T ss_pred             c------ChhhCCEEEEecC
Confidence            3      1246789888765

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.87  E-value=0.19  Score=43.67  Aligned_cols=81  Identities=10%  Similarity=-0.066  Sum_probs=44.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCC-hHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCR-LKSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~  102 (292)
                      .|++++ |+|+       +|+|..++..+..++.. ++++.++.++.+.+. ++     +... +  .|..+ .+..+++
T Consensus       168 ~g~~Vl-V~Ga-------G~vG~~a~qla~~~Ga~-Vi~~~~~~~~~~~~~-~l-----Ga~~-~--~~~~~~~~~~~~i  229 (352)
T 1e3j_A          168 LGTTVL-VIGA-------GPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAK-NC-----GADV-T--LVVDPAKEEESSI  229 (352)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHH-HT-----TCSE-E--EECCTTTSCHHHH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHH-Hh-----CCCE-E--EcCcccccHHHHH
Confidence            478888 8996       79999997665544222 233347777665432 22     3222 2  24443 2222333


Q ss_pred             HHHHHH-hCCCccEEEEcccc
Q psy4251         103 AEEYQK-KFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~-~~~~id~lI~nAg~  122 (292)
                      .+.... ....+|++|.++|.
T Consensus       230 ~~~~~~~~g~g~D~vid~~g~  250 (352)
T 1e3j_A          230 IERIRSAIGDLPNVTIDCSGN  250 (352)
T ss_dssp             HHHHHHHSSSCCSEEEECSCC
T ss_pred             HHHhccccCCCCCEEEECCCC
Confidence            222210 02369999999984

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=94.77  E-value=0.0086  Score=51.44  Aligned_cols=99  Identities=12%  Similarity=0.111  Sum_probs=54.1

Q ss_pred             CCCCceEEEEcCCC----------CCCC-Cccc-chhhHHHHHHHHhhcCcEEE--EcCHH--H------HHHHHHHHHh
Q psy4251          22 TYNGCLAILCTGDM----------EFYP-RYTG-LKKKDGNLCFDLVQSSKLFY--QNCWD--K------ANDAISKILT   79 (292)
Q Consensus        22 ~l~g~~~vlItGa~----------~~~~-~~~G-iG~~~a~~~~~l~~~g~~v~--~r~~~--~------~~~~~~~l~~   79 (292)
                      ++.||+++|||+|.          |++. .++| .|.++|+.   +..+|+.|+  .+...  .      .....+.+..
T Consensus        33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~---~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~  109 (313)
T 1p9o_A           33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEA---FLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRP  109 (313)
T ss_dssp             HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHH---HHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEE
T ss_pred             hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHH---HHHCCCEEEEEecCCCcCcchhccCccchhhhhcc
Confidence            57899933388664          1111 3447 99999555   556676665  23211  0      0000111100


Q ss_pred             hC-CCCceEEEEccCCChHHHHHHHHHH------------------------------HHhCCCccEEEEccccc
Q psy4251          80 EK-PSAQCIAMELDLCRLKSVKKFAEEY------------------------------QKKFRSLNILVLNAGVF  123 (292)
Q Consensus        80 ~~-~~~~~~~~~~Dls~~~~v~~~~~~~------------------------------~~~~~~id~lI~nAg~~  123 (292)
                      .. ....+..+.+|+.+.++..+.+.+.                              .+.+++.|++|++|++.
T Consensus       110 ~~~~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVs  184 (313)
T 1p9o_A          110 SGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVS  184 (313)
T ss_dssp             CCC-CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCC
T ss_pred             ccccccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchh
Confidence            00 0123446677777777766666543                              24457899999999986

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.55  E-value=0.057  Score=46.89  Aligned_cols=78  Identities=9%  Similarity=-0.032  Sum_probs=44.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|++++ |+|+       +|+|..++..+..++....+++.++.++.+.+.+ +     ...    ..|..+. ++.+.+
T Consensus       164 ~g~~Vl-V~Ga-------G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l-----a~~----v~~~~~~-~~~~~~  224 (343)
T 2dq4_A          164 SGKSVL-ITGA-------GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y-----ADR----LVNPLEE-DLLEVV  224 (343)
T ss_dssp             TTSCEE-EECC-------SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T-----CSE----EECTTTS-CHHHHH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h-----HHh----ccCcCcc-CHHHHH
Confidence            688898 9998       6999999666554322122333477666543221 2     111    1354442 333333


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      .++.  ...+|++|.++|.
T Consensus       225 ~~~~--~~g~D~vid~~g~  241 (343)
T 2dq4_A          225 RRVT--GSGVEVLLEFSGN  241 (343)
T ss_dssp             HHHH--SSCEEEEEECSCC
T ss_pred             HHhc--CCCCCEEEECCCC
Confidence            3332  3469999999984

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.43  E-value=1.6  Score=37.70  Aligned_cols=132  Identities=11%  Similarity=0.033  Sum_probs=73.4

Q ss_pred             HHhhcccCCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EE--EEcCHHHHHHHHHHHHhhC--C
Q psy4251           9 KQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LF--YQNCWDKANDAISKILTEK--P   82 (292)
Q Consensus         9 ~~~~~~~~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v--~~r~~~~~~~~~~~l~~~~--~   82 (292)
                      +.+++.+...+...-..+++. |+|+       +.+|..+|.   .++..|.  .|  +..++++++..+.+|.+..  +
T Consensus         5 ~~~~~~~~~~~~~~~~~~kV~-ViGa-------G~vG~~~a~---~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~   73 (330)
T 3ldh_A            5 KDKLIGHLATSQEPRSYNKIT-VVGC-------DAVGMADAI---SVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL   73 (330)
T ss_dssp             HHHHSCCCSCCCCCCCCCEEE-EEST-------THHHHHHHH---HHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGS
T ss_pred             HHHHHhhcccccccCCCCEEE-EECC-------CHHHHHHHH---HHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcc
Confidence            445555554443433456777 8888       799999944   4445553  33  3477888888777776542  1


Q ss_pred             -CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC
Q psy4251          83 -SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK  161 (292)
Q Consensus        83 -~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~  161 (292)
                       ..++. ...|..              .+..-|++|.+||....+.+ +.   ...+..|.--.-.+.+.+..+   .+.
T Consensus        74 ~~~~i~-~t~d~~--------------~~~daDiVIitaG~p~kpG~-tR---~dll~~N~~I~k~i~~~I~k~---~P~  131 (330)
T 3ldh_A           74 HTAKIV-SGKDYS--------------VSAGSKLVVITAGARQQEGE-SR---LNLVQRNVNIFKFIIPNIVKH---SPD  131 (330)
T ss_dssp             CCSEEE-EESSSC--------------SCSSCSEEEECCSCCCCSSC-CT---TGGGHHHHHHHHHHHHHHHHH---CTT
T ss_pred             cCCeEE-EcCCHH--------------HhCCCCEEEEeCCCCCCCCC-CH---HHHHHhhHHHHHHHHHHHHhh---CCC
Confidence             11221 122321              13467999999998643322 22   234444544333333433332   244


Q ss_pred             CCcEEEEEcCcccc
Q psy4251         162 LFARVVVVSSESHR  175 (292)
Q Consensus       162 ~~~~iV~vsS~~~~  175 (292)
                        +.++++|.....
T Consensus       132 --a~ilvvtNPvdi  143 (330)
T 3ldh_A          132 --CLKELHPELGTD  143 (330)
T ss_dssp             --CEEEECSSSHHH
T ss_pred             --ceEEeCCCccHH
Confidence              888888876543

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=94.42  E-value=0.041  Score=48.48  Aligned_cols=75  Identities=13%  Similarity=0.146  Sum_probs=43.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      .|++++ |+||+      +|+|..++..+..   .|+.|++ .+.++.+. ++++     +....   +|..+.+    +
T Consensus       183 ~g~~Vl-V~Ga~------G~vG~~~~qla~~---~Ga~Vi~~~~~~~~~~-~~~l-----Ga~~v---~~~~~~~----~  239 (375)
T 2vn8_A          183 TGKRVL-ILGAS------GGVGTFAIQVMKA---WDAHVTAVCSQDASEL-VRKL-----GADDV---IDYKSGS----V  239 (375)
T ss_dssp             TTCEEE-EETTT------SHHHHHHHHHHHH---TTCEEEEEECGGGHHH-HHHT-----TCSEE---EETTSSC----H
T ss_pred             CCCEEE-EECCC------CHHHHHHHHHHHh---CCCEEEEEeChHHHHH-HHHc-----CCCEE---EECCchH----H
Confidence            578888 99998      9999999666554   4555553 23333322 2222     22222   2444432    2


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+++.+ .+.+|++|.|+|.
T Consensus       240 ~~~~~~-~~g~D~vid~~g~  258 (375)
T 2vn8_A          240 EEQLKS-LKPFDFILDNVGG  258 (375)
T ss_dssp             HHHHHT-SCCBSEEEESSCT
T ss_pred             HHHHhh-cCCCCEEEECCCC
Confidence            233333 2579999999984

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.33  E-value=0.21  Score=44.02  Aligned_cols=79  Identities=10%  Similarity=0.045  Sum_probs=45.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCC--ChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLC--RLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls--~~~~v~~  101 (292)
                      .|++++ |+| +      +|+|..++..+..++....+++.++.++.+.+. ++     +... ++  |..  +.++   
T Consensus       195 ~g~~Vl-V~G-a------G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~l-----Ga~~-vi--~~~~~~~~~---  254 (380)
T 1vj0_A          195 AGKTVV-IQG-A------GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI-----GADL-TL--NRRETSVEE---  254 (380)
T ss_dssp             BTCEEE-EEC-C------SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HT-----TCSE-EE--ETTTSCHHH---
T ss_pred             CCCEEE-EEC-c------CHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-Hc-----CCcE-EE--eccccCcch---
Confidence            478888 999 6      899999976655432122233347777665433 22     2222 22  332  1333   


Q ss_pred             HHHHHHHhCC--CccEEEEcccc
Q psy4251         102 FAEEYQKKFR--SLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~--~id~lI~nAg~  122 (292)
                      +.+++.+..+  .+|++|.++|.
T Consensus       255 ~~~~v~~~~~g~g~Dvvid~~g~  277 (380)
T 1vj0_A          255 RRKAIMDITHGRGADFILEATGD  277 (380)
T ss_dssp             HHHHHHHHTTTSCEEEEEECSSC
T ss_pred             HHHHHHHHhCCCCCcEEEECCCC
Confidence            3333443332  69999999984

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.28  E-value=0.041  Score=46.84  Aligned_cols=72  Identities=8%  Similarity=0.037  Sum_probs=43.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|++      +|+|..++..+..   .|+.|+  .++.++.+.+. ++     +....   .|..+.+   +
T Consensus       125 ~g~~vl-V~Ga~------G~vG~~~~~~a~~---~Ga~Vi~~~~~~~~~~~~~-~~-----ga~~~---~~~~~~~---~  182 (302)
T 1iz0_A          125 PGEKVL-VQAAA------GALGTAAVQVARA---MGLRVLAAASRPEKLALPL-AL-----GAEEA---ATYAEVP---E  182 (302)
T ss_dssp             TTCEEE-ESSTT------BHHHHHHHHHHHH---TTCEEEEEESSGGGSHHHH-HT-----TCSEE---EEGGGHH---H
T ss_pred             CCCEEE-EECCC------cHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHH-hc-----CCCEE---EECCcch---h
Confidence            478888 99999      9999999666553   455554  46666655432 22     22221   3443311   2


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+.+    +.+|++|+ +|.
T Consensus       183 ~~~~~----~~~d~vid-~g~  198 (302)
T 1iz0_A          183 RAKAW----GGLDLVLE-VRG  198 (302)
T ss_dssp             HHHHT----TSEEEEEE-CSC
T ss_pred             HHHHh----cCceEEEE-CCH
Confidence            22333    57999999 873

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.27  E-value=0.14  Score=44.83  Aligned_cols=76  Identities=12%  Similarity=0.041  Sum_probs=45.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+| +      +++|..++..+..   .|+.|+  .++.++.+.+ +++     +....   .| .+.+++.+
T Consensus       189 ~g~~Vl-V~G-~------G~vG~~a~qla~~---~Ga~Vi~~~~~~~~~~~~-~~l-----Ga~~v---i~-~~~~~~~~  247 (363)
T 3uog_A          189 AGDRVV-VQG-T------GGVALFGLQIAKA---TGAEVIVTSSSREKLDRA-FAL-----GADHG---IN-RLEEDWVE  247 (363)
T ss_dssp             TTCEEE-EES-S------BHHHHHHHHHHHH---TTCEEEEEESCHHHHHHH-HHH-----TCSEE---EE-TTTSCHHH
T ss_pred             CCCEEE-EEC-C------CHHHHHHHHHHHH---cCCEEEEEecCchhHHHH-HHc-----CCCEE---Ec-CCcccHHH
Confidence            478888 999 6      8999999666553   455554  4777776553 333     32222   24 33333333


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      .+.++.. ...+|++|.++|
T Consensus       248 ~v~~~~~-g~g~D~vid~~g  266 (363)
T 3uog_A          248 RVYALTG-DRGADHILEIAG  266 (363)
T ss_dssp             HHHHHHT-TCCEEEEEEETT
T ss_pred             HHHHHhC-CCCceEEEECCC
Confidence            3333322 126999999998

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.24  E-value=0.03  Score=47.46  Aligned_cols=47  Identities=9%  Similarity=0.046  Sum_probs=33.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAIS   75 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~   75 (292)
                      .+++|++++ |.|+       +|.|++++..+.++....+.|+.|+.++++++++
T Consensus       118 ~~~~~k~vl-vlGa-------GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~  164 (282)
T 3fbt_A          118 VEIKNNICV-VLGS-------GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG  164 (282)
T ss_dssp             CCCTTSEEE-EECS-------STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT
T ss_pred             CCccCCEEE-EECC-------cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            457899999 9998       7999999555444432334455699988776554

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.20  E-value=0.052  Score=50.58  Aligned_cols=62  Identities=16%  Similarity=0.083  Sum_probs=46.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC-------------------HHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC-------------------WDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~-------------------~~~~~~~~~~l~   78 (292)
                      ..|++++|+ |.|+       +|+|.++   +..|+..|+   +|+..+                   ..|++.+++.++
T Consensus       323 ~kL~~~kVL-IVGa-------GGLGs~v---a~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~  391 (598)
T 3vh1_A          323 DIIKNTKVL-LLGA-------GTLGCYV---SRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLK  391 (598)
T ss_dssp             HHHHTCEEE-EECC-------SHHHHHH---HHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHH
T ss_pred             HHHhCCeEE-EECC-------CHHHHHH---HHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHH
Confidence            457788999 9999       7999999   444555553   344222                   258999999999


Q ss_pred             hhCCCCceEEEEccC
Q psy4251          79 TEKPSAQCIAMELDL   93 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dl   93 (292)
                      +.+|..++..+..++
T Consensus       392 ~iNP~v~v~~~~~~I  406 (598)
T 3vh1_A          392 RIFPLMDATGVKLSI  406 (598)
T ss_dssp             HHCTTCEEEEECCCC
T ss_pred             hHCCCcEEEEEeccc
Confidence            998888888888765

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=94.10  E-value=0.098  Score=46.68  Aligned_cols=74  Identities=9%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++.|++++ |.|+       +++|..+++.+..++...+.++.|+.+++++.++++     +..  .  .|.   +++.+
T Consensus       164 ~l~g~~Vl-IiGa-------G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~-----g~~--~--~~~---~~l~~  223 (404)
T 1gpj_A          164 SLHDKTVL-VVGA-------GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-----GGE--A--VRF---DELVD  223 (404)
T ss_dssp             CCTTCEEE-EESC-------CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-----TCE--E--CCG---GGHHH
T ss_pred             cccCCEEE-EECh-------HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-----CCc--e--ecH---HhHHH
Confidence            46799999 9998       799999966655442222333458888877766655     222  1  222   23333


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+       ...|+||.+.|.
T Consensus       224 ~l-------~~aDvVi~at~~  237 (404)
T 1gpj_A          224 HL-------ARSDVVVSATAA  237 (404)
T ss_dssp             HH-------HTCSEEEECCSS
T ss_pred             Hh-------cCCCEEEEccCC
Confidence            22       257999999764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.79  E-value=0.24  Score=36.85  Aligned_cols=75  Identities=11%  Similarity=0.067  Sum_probs=47.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++++ ++ |.|.       +.+|..+++   .|...|+.|  +.+++++.+++.    +.    .+.++.+|.++++.
T Consensus         4 ~~~~~~-vi-IiG~-------G~~G~~la~---~L~~~g~~v~vid~~~~~~~~~~----~~----g~~~i~gd~~~~~~   63 (140)
T 3fwz_A            4 VDICNH-AL-LVGY-------GRVGSLLGE---KLLASDIPLVVIETSRTRVDELR----ER----GVRAVLGNAANEEI   63 (140)
T ss_dssp             CCCCSC-EE-EECC-------SHHHHHHHH---HHHHTTCCEEEEESCHHHHHHHH----HT----TCEEEESCTTSHHH
T ss_pred             ccCCCC-EE-EECc-------CHHHHHHHH---HHHHCCCCEEEEECCHHHHHHHH----Hc----CCCEEECCCCCHHH
Confidence            445544 55 5676       578999954   455556554  458887766543    22    45678899999876


Q ss_pred             HHHHHHHHHHhCCCccEEEEccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.++      ...+.|++|.+.+
T Consensus        64 l~~a------~i~~ad~vi~~~~   80 (140)
T 3fwz_A           64 MQLA------HLECAKWLILTIP   80 (140)
T ss_dssp             HHHT------TGGGCSEEEECCS
T ss_pred             HHhc------CcccCCEEEEECC
Confidence            5543      1235788888765

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.77  E-value=0.046  Score=41.60  Aligned_cols=77  Identities=10%  Similarity=0.033  Sum_probs=46.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++..+++++ |.|+       +.+|..+++.   |...|..|+  .++.++++.    +...   .....+..|.++.+.
T Consensus        15 ~~~~~~~v~-IiG~-------G~iG~~la~~---L~~~g~~V~vid~~~~~~~~----~~~~---~g~~~~~~d~~~~~~   76 (155)
T 2g1u_A           15 KKQKSKYIV-IFGC-------GRLGSLIANL---ASSSGHSVVVVDKNEYAFHR----LNSE---FSGFTVVGDAAEFET   76 (155)
T ss_dssp             --CCCCEEE-EECC-------SHHHHHHHHH---HHHTTCEEEEEESCGGGGGG----SCTT---CCSEEEESCTTSHHH
T ss_pred             cccCCCcEE-EECC-------CHHHHHHHHH---HHhCCCeEEEEECCHHHHHH----HHhc---CCCcEEEecCCCHHH
Confidence            556778888 8887       7999999554   555565554  477665432    2101   134567788887654


Q ss_pred             HHHHHHHHHHhCCCccEEEEccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+.      .....|++|.+.+
T Consensus        77 l~~~------~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           77 LKEC------GMEKADMVFAFTN   93 (155)
T ss_dssp             HHTT------TGGGCSEEEECSS
T ss_pred             HHHc------CcccCCEEEEEeC
Confidence            3221      1235899999876

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=93.76  E-value=0.11  Score=45.57  Aligned_cols=76  Identities=8%  Similarity=0.025  Sum_probs=45.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+||+      +++|...+..+..+  .|..|++  ++.++.+.+. ++     +....   .|-.+  +   
T Consensus       171 ~g~~Vl-V~Ga~------G~vG~~a~qlak~~--~g~~Vi~~~~~~~~~~~~~-~l-----Gad~v---i~~~~--~---  227 (363)
T 4dvj_A          171 AAPAIL-IVGGA------GGVGSIAVQIARQR--TDLTVIATASRPETQEWVK-SL-----GAHHV---IDHSK--P---  227 (363)
T ss_dssp             SEEEEE-EESTT------SHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHH-HT-----TCSEE---ECTTS--C---
T ss_pred             CCCEEE-EECCC------CHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHHH-Hc-----CCCEE---EeCCC--C---
Confidence            578888 99998      99999996665433  3445553  6666654432 22     32222   23332  2   


Q ss_pred             HHHHHHHhC-CCccEEEEcccc
Q psy4251         102 FAEEYQKKF-RSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~-~~id~lI~nAg~  122 (292)
                      +.+++.+.. +.+|+++.++|.
T Consensus       228 ~~~~v~~~~~~g~Dvvid~~g~  249 (363)
T 4dvj_A          228 LAAEVAALGLGAPAFVFSTTHT  249 (363)
T ss_dssp             HHHHHHTTCSCCEEEEEECSCH
T ss_pred             HHHHHHHhcCCCceEEEECCCc
Confidence            333343332 379999999884

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=93.55  E-value=1.3  Score=38.29  Aligned_cols=118  Identities=13%  Similarity=0.082  Sum_probs=66.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---------EEEEcC--HHHHHHHHHHHHhh-CCCCceEEEEccC
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---------LFYQNC--WDKANDAISKILTE-KPSAQCIAMELDL   93 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---------~v~~r~--~~~~~~~~~~l~~~-~~~~~~~~~~~Dl   93 (292)
                      .++. ||||+      +.+|..+   +..|+..+.         .++..+  .++++..+.+|.+. .+-  ..  ....
T Consensus         4 ~kV~-V~Gaa------G~VG~~l---a~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~--~~--~~~~   69 (333)
T 5mdh_A            4 IRVL-VTGAA------GQIAYSL---LYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL--LK--DVIA   69 (333)
T ss_dssp             EEEE-ESSTT------SHHHHTT---HHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT--EE--EEEE
T ss_pred             eEEE-EECCC------CHHHHHH---HHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc--cC--CEEE
Confidence            3577 99998      9999999   555544442         333343  46777777888764 221  11  1111


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCc-EEEEEcCc
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA-RVVVVSSE  172 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~-~iV~vsS~  172 (292)
                      ++  +       ..+.+..-|++|++||....+. .+   ....++.|......+.+.+    .+..+ .+ +|+++|..
T Consensus        70 ~~--~-------~~~~~~daDvVvitAg~prkpG-~t---R~dll~~N~~i~~~i~~~i----~~~~~-~~~~vivvsNP  131 (333)
T 5mdh_A           70 TD--K-------EEIAFKDLDVAILVGSMPRRDG-ME---RKDLLKANVKIFKCQGAAL----DKYAK-KSVKVIVVGNP  131 (333)
T ss_dssp             ES--C-------HHHHTTTCSEEEECCSCCCCTT-CC---TTTTHHHHHHHHHHHHHHH----HHHSC-TTCEEEECSSS
T ss_pred             cC--C-------cHHHhCCCCEEEEeCCCCCCCC-CC---HHHHHHHHHHHHHHHHHHH----HHhCC-CCeEEEEcCCc
Confidence            11  1       1112346899999999753222 22   3345666766655555544    33332 15 68888876


Q ss_pred             ccc
Q psy4251         173 SHR  175 (292)
Q Consensus       173 ~~~  175 (292)
                      ...
T Consensus       132 vd~  134 (333)
T 5mdh_A          132 ANT  134 (333)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            443

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=93.53  E-value=0.15  Score=44.54  Aligned_cols=84  Identities=11%  Similarity=0.015  Sum_probs=43.4

Q ss_pred             CC-ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh--HH
Q psy4251          24 NG-CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL--KS   98 (292)
Q Consensus        24 ~g-~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~--~~   98 (292)
                      .| .+++ |+|++      +++|...+..+..+   |+.++  +++.++.++..+.+++.  +.... +  |-.+.  ++
T Consensus       166 ~g~~~Vl-V~Ga~------G~vG~~aiqlak~~---Ga~vi~~~~~~~~~~~~~~~~~~l--Ga~~v-i--~~~~~~~~~  230 (364)
T 1gu7_A          166 PGKDWFI-QNGGT------SAVGKYASQIGKLL---NFNSISVIRDRPNLDEVVASLKEL--GATQV-I--TEDQNNSRE  230 (364)
T ss_dssp             TTTCEEE-ESCTT------SHHHHHHHHHHHHH---TCEEEEEECCCTTHHHHHHHHHHH--TCSEE-E--EHHHHHCGG
T ss_pred             CCCcEEE-ECCCC------cHHHHHHHHHHHHC---CCEEEEEecCccccHHHHHHHHhc--CCeEE-E--ecCccchHH
Confidence            46 7888 99999      99999997765543   44433  45544322222223222  32222 2  21110  12


Q ss_pred             HHHHHHHHHH-hCCCccEEEEcccc
Q psy4251          99 VKKFAEEYQK-KFRSLNILVLNAGV  122 (292)
Q Consensus        99 v~~~~~~~~~-~~~~id~lI~nAg~  122 (292)
                      +.+.+.++-. ..+.+|++|.++|.
T Consensus       231 ~~~~i~~~t~~~~~g~Dvvid~~G~  255 (364)
T 1gu7_A          231 FGPTIKEWIKQSGGEAKLALNCVGG  255 (364)
T ss_dssp             GHHHHHHHHHHHTCCEEEEEESSCH
T ss_pred             HHHHHHHHhhccCCCceEEEECCCc
Confidence            2222222210 12469999999984

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.37  E-value=0.022  Score=42.88  Aligned_cols=69  Identities=7%  Similarity=0.030  Sum_probs=44.0

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE--EEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL--FYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~--v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |+++. |.|+       +++|..+++   .+...|+.  ++.|+.+++++..+++.     ..+  .  +..+.   .+.
T Consensus        21 ~~~v~-iiG~-------G~iG~~~a~---~l~~~g~~v~v~~r~~~~~~~~a~~~~-----~~~--~--~~~~~---~~~   77 (144)
T 3oj0_A           21 GNKIL-LVGN-------GMLASEIAP---YFSYPQYKVTVAGRNIDHVRAFAEKYE-----YEY--V--LINDI---DSL   77 (144)
T ss_dssp             CCEEE-EECC-------SHHHHHHGG---GCCTTTCEEEEEESCHHHHHHHHHHHT-----CEE--E--ECSCH---HHH
T ss_pred             CCEEE-EECC-------CHHHHHHHH---HHHhCCCEEEEEcCCHHHHHHHHHHhC-----Cce--E--eecCH---HHH
Confidence            78888 8897       799999944   45455554  44599988887776652     111  1  22232   222


Q ss_pred             HHHHHHhCCCccEEEEccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~  123 (292)
                      +       ...|++|++.+..
T Consensus        78 ~-------~~~Divi~at~~~   91 (144)
T 3oj0_A           78 I-------KNNDVIITATSSK   91 (144)
T ss_dssp             H-------HTCSEEEECSCCS
T ss_pred             h-------cCCCEEEEeCCCC
Confidence            2       1479999988754

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.36  E-value=1.3  Score=38.10  Aligned_cols=116  Identities=9%  Similarity=-0.044  Sum_probs=67.4

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--E--EEEcCHHHHHHHHHHHHhhCCC--CceEEEEccCCChHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--L--FYQNCWDKANDAISKILTEKPS--AQCIAMELDLCRLKS   98 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~--v~~r~~~~~~~~~~~l~~~~~~--~~~~~~~~Dls~~~~   98 (292)
                      .+++. |+|+       +.+|..+|..   ++..|.  .  ++.++.++++..+.+|.+..|-  ..+.....|   .  
T Consensus         5 ~~kI~-ViGa-------G~vG~~~a~~---l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~--   68 (326)
T 3pqe_A            5 VNKVA-LIGA-------GFVGSSYAFA---LINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y--   68 (326)
T ss_dssp             CCEEE-EECC-------SHHHHHHHHH---HHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G--
T ss_pred             CCEEE-EECC-------CHHHHHHHHH---HHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H--
Confidence            45677 8886       7999999554   444443  3  3447888888888788765331  233333222   1  


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~  175 (292)
                               +....-|++|.+||....+. .+   ....++.|.--.    +.+.+.+.+. +.  +.|+++|.....
T Consensus        69 ---------~a~~~aDvVvi~ag~p~kpG-~~---R~dL~~~N~~Iv----~~i~~~I~~~~p~--a~vlvvtNPvd~  127 (326)
T 3pqe_A           69 ---------EDCKDADIVCICAGANQKPG-ET---RLELVEKNLKIF----KGIVSEVMASGFD--GIFLVATNPVDI  127 (326)
T ss_dssp             ---------GGGTTCSEEEECCSCCCCTT-CC---HHHHHHHHHHHH----HHHHHHHHHTTCC--SEEEECSSSHHH
T ss_pred             ---------HHhCCCCEEEEecccCCCCC-cc---HHHHHHHHHHHH----HHHHHHHHHhcCC--eEEEEcCChHHH
Confidence                     12345799999999743221 12   233455565444    4444444433 34  888888876543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.15  E-value=0.45  Score=41.38  Aligned_cols=77  Identities=10%  Similarity=0.059  Sum_probs=43.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCC--ChHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLC--RLKS   98 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls--~~~~   98 (292)
                      .|.+++ |+|+       +|+|..++..+..+   |+ .|+  .++.++.+.+. ++     +... +  .|..  +.++
T Consensus       171 ~g~~Vl-V~Ga-------G~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~-~l-----Ga~~-v--i~~~~~~~~~  230 (356)
T 1pl8_A          171 LGHKVL-VCGA-------GPIGMVTLLVAKAM---GAAQVVVTDLSATRLSKAK-EI-----GADL-V--LQISKESPQE  230 (356)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHT---TCSEEEEEESCHHHHHHHH-HT-----TCSE-E--EECSSCCHHH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHH-Hh-----CCCE-E--EcCcccccch
Confidence            478888 8995       79999996665543   44 443  46776655432 22     2222 2  2333  2222


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      ..+-+.+...  ..+|++|.++|.
T Consensus       231 ~~~~i~~~~~--~g~D~vid~~g~  252 (356)
T 1pl8_A          231 IARKVEGQLG--CKPEVTIECTGA  252 (356)
T ss_dssp             HHHHHHHHHT--SCCSEEEECSCC
T ss_pred             HHHHHHHHhC--CCCCEEEECCCC
Confidence            2222222211  469999999983

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=92.79  E-value=0.89  Score=39.19  Aligned_cols=117  Identities=11%  Similarity=0.052  Sum_probs=61.7

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc----EEEEcCHHHHHHHHHHHHhhCCC-CceEEEEccCCChH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK----LFYQNCWDKANDAISKILTEKPS-AQCIAMELDLCRLK   97 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~----~v~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dls~~~   97 (292)
                      -+++++. |+|+       +++|..+|..   ++..+.    .++.++.++++....+|.+..+- ..+.... |  +. 
T Consensus         7 ~~~~kV~-ViGa-------G~vG~~~a~~---l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~-~--~~-   71 (326)
T 3vku_A            7 KDHQKVI-LVGD-------GAVGSSYAYA---MVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS-A--EY-   71 (326)
T ss_dssp             CCCCEEE-EECC-------SHHHHHHHHH---HHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--CG-
T ss_pred             CCCCEEE-EECC-------CHHHHHHHHH---HHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE-C--cH-
Confidence            3456778 8896       7999999554   444443    33457888888888888764321 1222222 1  11 


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~  174 (292)
                                +.+..-|++|.+||....+. .+.   ...++.|.--    .+.+.+.+.+. +.  +.|+++|....
T Consensus        72 ----------~a~~~aDiVvi~ag~~~kpG-~tR---~dL~~~N~~I----~~~i~~~i~~~~p~--a~ilvvtNPvd  129 (326)
T 3vku_A           72 ----------SDAKDADLVVITAGAPQKPG-ETR---LDLVNKNLKI----LKSIVDPIVDSGFN--GIFLVAANPVD  129 (326)
T ss_dssp             ----------GGGTTCSEEEECCCCC--------------------C----HHHHHHHHHTTTCC--SEEEECSSSHH
T ss_pred             ----------HHhcCCCEEEECCCCCCCCC-chH---HHHHHHHHHH----HHHHHHHHHhcCCc--eEEEEccCchH
Confidence                      22346899999999753222 222   2234444433    34444445443 34  78888877644

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.75  E-value=0.39  Score=38.57  Aligned_cols=71  Identities=7%  Similarity=0.022  Sum_probs=47.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++ |.|+       +-+|..+++.   |...|+.|  +.+++++.++..++.       .+.++.+|.++.+.+++.  
T Consensus         2 ~ii-IiG~-------G~~G~~la~~---L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a--   61 (218)
T 3l4b_C            2 KVI-IIGG-------ETTAYYLARS---MLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDA--   61 (218)
T ss_dssp             CEE-EECC-------HHHHHHHHHH---HHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHH--
T ss_pred             EEE-EECC-------CHHHHHHHHH---HHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhc--
Confidence            356 8887       6899999554   55555554  458887776544321       356789999998766543  


Q ss_pred             HHHHhCCCccEEEEccc
Q psy4251         105 EYQKKFRSLNILVLNAG  121 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg  121 (292)
                          .....|++|.+.+
T Consensus        62 ----~i~~ad~vi~~~~   74 (218)
T 3l4b_C           62 ----EVSKNDVVVILTP   74 (218)
T ss_dssp             ----TCCTTCEEEECCS
T ss_pred             ----CcccCCEEEEecC
Confidence                2346799987655

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=92.55  E-value=0.2  Score=43.98  Aligned_cols=75  Identities=13%  Similarity=0.057  Sum_probs=43.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .|++++ |+|+       +|+|...+..+..   .|+ .|+  .++.++.+ .++++     +....   .|.++.+.  
T Consensus       182 ~g~~Vl-V~Ga-------G~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~-~a~~l-----Ga~~v---i~~~~~~~--  239 (370)
T 4ej6_A          182 AGSTVA-ILGG-------GVIGLLTVQLARL---AGATTVILSTRQATKRR-LAEEV-----GATAT---VDPSAGDV--  239 (370)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHH---TTCSEEEEECSCHHHHH-HHHHH-----TCSEE---ECTTSSCH--
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHH---cCCCEEEEECCCHHHHH-HHHHc-----CCCEE---ECCCCcCH--
Confidence            478888 8987       7999999666553   444 443  36666654 33333     32222   34444332  


Q ss_pred             HHHHHHHH----hCCCccEEEEcccc
Q psy4251         101 KFAEEYQK----KFRSLNILVLNAGV  122 (292)
Q Consensus       101 ~~~~~~~~----~~~~id~lI~nAg~  122 (292)
                        .+.+.+    ..+.+|++|.++|.
T Consensus       240 --~~~i~~~~~~~~gg~Dvvid~~G~  263 (370)
T 4ej6_A          240 --VEAIAGPVGLVPGGVDVVIECAGV  263 (370)
T ss_dssp             --HHHHHSTTSSSTTCEEEEEECSCC
T ss_pred             --HHHHHhhhhccCCCCCEEEECCCC
Confidence              223332    12479999999884

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=92.55  E-value=0.24  Score=42.75  Aligned_cols=74  Identities=12%  Similarity=0.033  Sum_probs=44.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|+       +|+|...+..+..   .|+.|+  .++.++.+.+ +++     +....   .|-.+.+..+.
T Consensus       166 ~g~~Vl-V~Ga-------G~vG~~a~qla~~---~Ga~Vi~~~~~~~~~~~~-~~l-----Ga~~~---i~~~~~~~~~~  225 (340)
T 3s2e_A          166 PGQWVV-ISGI-------GGLGHVAVQYARA---MGLRVAAVDIDDAKLNLA-RRL-----GAEVA---VNARDTDPAAW  225 (340)
T ss_dssp             TTSEEE-EECC-------STTHHHHHHHHHH---TTCEEEEEESCHHHHHHH-HHT-----TCSEE---EETTTSCHHHH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHH-HHc-----CCCEE---EeCCCcCHHHH
Confidence            578888 8886       7999999666553   355555  3777776543 222     22222   34444333333


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+    ..+.+|++|.++|
T Consensus       226 ~~~----~~g~~d~vid~~g  241 (340)
T 3s2e_A          226 LQK----EIGGAHGVLVTAV  241 (340)
T ss_dssp             HHH----HHSSEEEEEESSC
T ss_pred             HHH----hCCCCCEEEEeCC
Confidence            322    2357999999987

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=92.38  E-value=0.65  Score=39.79  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=62.8

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ++. |+||+      +.+|..+   +..|+..+  ..|.  .++.  .+....++.+.....++.....    ..+.++.
T Consensus         2 KI~-IiGa~------G~VG~~l---a~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~----t~d~~~a   65 (314)
T 1mld_A            2 KVA-VLGAS------GGIGQPL---SLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLG----PEQLPDC   65 (314)
T ss_dssp             EEE-EETTT------STTHHHH---HHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEES----GGGHHHH
T ss_pred             EEE-EECCC------ChHHHHH---HHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecC----CCCHHHH
Confidence            356 89998      8999999   55565666  3343  4554  3444445544321112222110    1122222


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                         +    ..-|++|++||....+. .+.   ...+..|.-....+.+.+..+   .+.  ++||++|......
T Consensus        66 ---~----~~aDvVvi~ag~~~~~g-~~r---~dl~~~n~~i~~~i~~~i~~~---~p~--a~viv~sNPv~~~  123 (314)
T 1mld_A           66 ---L----KGCDVVVIPAGVPRKPG-MTR---DDLFNTNATIVATLTAACAQH---CPD--AMICIISNPVNST  123 (314)
T ss_dssp             ---H----TTCSEEEECCSCCCCTT-CCG---GGGHHHHHHHHHHHHHHHHHH---CTT--SEEEECSSCHHHH
T ss_pred             ---h----CCCCEEEECCCcCCCCC-CcH---HHHHHHHHHHHHHHHHHHHhh---CCC--eEEEEECCCcchh
Confidence               2    35799999999864322 122   233555655555555544332   234  8999987765543

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=92.25  E-value=0.12  Score=45.13  Aligned_cols=82  Identities=11%  Similarity=0.137  Sum_probs=53.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE----------cC---------HHHHHHHHHHHHhhCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ----------NC---------WDKANDAISKILTEKP   82 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~----------r~---------~~~~~~~~~~l~~~~~   82 (292)
                      .|.+.+|+ |.|+       +|+|.++++.+...+-...+|+.          |.         ..|++.+++.+++.+|
T Consensus        33 ~L~~~~Vl-ivG~-------GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp  104 (346)
T 1y8q_A           33 RLRASRVL-LVGL-------KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNP  104 (346)
T ss_dssp             HHHTCEEE-EECC-------SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCT
T ss_pred             HHhCCeEE-EECC-------CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCC
Confidence            46678888 8998       79999995553333222234441          21         3588999999999988


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      ..++..+..++++  ...++       +...|+||.+.
T Consensus       105 ~v~v~~~~~~~~~--~~~~~-------~~~~dvVv~~~  133 (346)
T 1y8q_A          105 MVDVKVDTEDIEK--KPESF-------FTQFDAVCLTC  133 (346)
T ss_dssp             TSEEEEECSCGGG--CCHHH-------HTTCSEEEEES
T ss_pred             CeEEEEEecccCc--chHHH-------hcCCCEEEEcC
Confidence            8888888777653  11122       13468887653

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.19  E-value=0.13  Score=44.26  Aligned_cols=75  Identities=9%  Similarity=-0.070  Sum_probs=39.8

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      +++ |+|++      +|+|..++..+..++ ...+++.++.++.+.+. ++     +....   +|..+.+  .+.++++
T Consensus       152 ~Vl-V~Ga~------G~vG~~~~q~a~~~G-a~vi~~~~~~~~~~~~~-~l-----Ga~~~---i~~~~~~--~~~~~~~  212 (328)
T 1xa0_A          152 PVL-VTGAT------GGVGSLAVSMLAKRG-YTVEASTGKAAEHDYLR-VL-----GAKEV---LAREDVM--AERIRPL  212 (328)
T ss_dssp             CEE-ESSTT------SHHHHHHHHHHHHTT-CCEEEEESCTTCHHHHH-HT-----TCSEE---EECC-----------C
T ss_pred             eEE-EecCC------CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHH-Hc-----CCcEE---EecCCcH--HHHHHHh
Confidence            677 99999      999999977655442 22333356665554432 22     22222   2444332  1222222


Q ss_pred             HHhCCCccEEEEcccc
Q psy4251         107 QKKFRSLNILVLNAGV  122 (292)
Q Consensus       107 ~~~~~~id~lI~nAg~  122 (292)
                      .  .+.+|++|.++|.
T Consensus       213 ~--~~~~d~vid~~g~  226 (328)
T 1xa0_A          213 D--KQRWAAAVDPVGG  226 (328)
T ss_dssp             C--SCCEEEEEECSTT
T ss_pred             c--CCcccEEEECCcH
Confidence            1  2369999999983

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=92.18  E-value=1.5  Score=38.12  Aligned_cols=120  Identities=9%  Similarity=-0.033  Sum_probs=64.3

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhh-cCcEEEEcCHHHHHHHHHHHHhh-CCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQ-SSKLFYQNCWDKANDAISKILTE-KPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~-~g~~v~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++++++. |+|++      +.+|..+|..++.+.. ....++..+.++++..+.+|.+. ++..++.+ .   ++   ..
T Consensus         6 ~~~~KV~-ViGaa------G~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t---~d---~~   71 (343)
T 3fi9_A            6 LTEEKLT-IVGAA------GMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T---SD---IK   71 (343)
T ss_dssp             SCSSEEE-EETTT------SHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E---SC---HH
T ss_pred             cCCCEEE-EECCC------ChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c---CC---HH
Confidence            4567788 89988      8999999544333322 12334457888888777777654 22122221 1   11   11


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcE-EEEEcCcc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFAR-VVVVSSES  173 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~-iV~vsS~~  173 (292)
                         +.+    ..-|++|.+||....+.    +.....++.|.--...+.+    .+.+. +.  +. |+++|...
T Consensus        72 ---~al----~dADvVvitaG~p~kpG----~~R~dLl~~N~~I~~~i~~----~i~~~~p~--a~~vlvvsNPv  129 (343)
T 3fi9_A           72 ---EAL----TDAKYIVSSGGAPRKEG----MTREDLLKGNAEIAAQLGK----DIKSYCPD--CKHVIIIFNPA  129 (343)
T ss_dssp             ---HHH----TTEEEEEECCC-----------CHHHHHHHHHHHHHHHHH----HHHHHCTT--CCEEEECSSSH
T ss_pred             ---HHh----CCCCEEEEccCCCCCCC----CCHHHHHHHHHHHHHHHHH----HHHHhccC--cEEEEEecCch
Confidence               112    35799999999753221    1233446666554444444    44433 33  64 77777654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=91.85  E-value=0.24  Score=43.37  Aligned_cols=77  Identities=14%  Similarity=0.037  Sum_probs=44.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC-hHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR-LKSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v   99 (292)
                      .|++++ |+|+       +|+|..++..+..+   |+ .|+  .++.++.+.+ +++     +....   .|..+ .+++
T Consensus       190 ~g~~Vl-V~Ga-------G~vG~~avqla~~~---Ga~~Vi~~~~~~~~~~~~-~~l-----Ga~~v---i~~~~~~~~~  249 (373)
T 2fzw_A          190 PGSVCA-VFGL-------GGVGLAVIMGCKVA---GASRIIGVDINKDKFARA-KEF-----GATEC---INPQDFSKPI  249 (373)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHH---TCSEEEEECSCGGGHHHH-HHH-----TCSEE---ECGGGCSSCH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHH-HHc-----CCceE---eccccccccH
Confidence            478888 8995       89999997765544   44 343  3666665543 233     22221   24332 1233


Q ss_pred             HHHHHHHHHhCCCccEEEEcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.+.++..  +.+|++|.++|.
T Consensus       250 ~~~v~~~~~--~g~D~vid~~g~  270 (373)
T 2fzw_A          250 QEVLIEMTD--GGVDYSFECIGN  270 (373)
T ss_dssp             HHHHHHHTT--SCBSEEEECSCC
T ss_pred             HHHHHHHhC--CCCCEEEECCCc
Confidence            333333322  379999999984

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=91.82  E-value=0.66  Score=40.77  Aligned_cols=80  Identities=11%  Similarity=0.058  Sum_probs=45.1

Q ss_pred             CCceEEEEcC-CCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          24 NGCLAILCTG-DMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItG-a~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      .|.+++ |.| |+      +++|...+..+..++. ..+++.++.++.+.+. ++     +....   .|-.+.+-.+.+
T Consensus       170 ~g~~vl-V~gag~------G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~-~l-----Ga~~~---~~~~~~~~~~~v  232 (379)
T 3iup_A          170 EGHSAL-VHTAAA------SNLGQMLNQICLKDGI-KLVNIVRKQEQADLLK-AQ-----GAVHV---CNAASPTFMQDL  232 (379)
T ss_dssp             TTCSCE-EESSTT------SHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHH-HT-----TCSCE---EETTSTTHHHHH
T ss_pred             CCCEEE-EECCCC------CHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-hC-----CCcEE---EeCCChHHHHHH
Confidence            477888 664 77      9999999777665432 3333357777765443 22     22222   233343322222


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+....  ..+|++|.++|.
T Consensus       233 ~~~t~~--~g~d~v~d~~g~  250 (379)
T 3iup_A          233 TEALVS--TGATIAFDATGG  250 (379)
T ss_dssp             HHHHHH--HCCCEEEESCEE
T ss_pred             HHHhcC--CCceEEEECCCc
Confidence            222211  259999999985

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=91.75  E-value=0.15  Score=44.80  Aligned_cols=77  Identities=10%  Similarity=0.046  Sum_probs=44.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC-hHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR-LKSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v   99 (292)
                      .|++++ |+|+       +|+|..++..+..   .|+ .|+  .++.++.+.+. ++     +....   +|..+ .+++
T Consensus       192 ~g~~Vl-V~Ga-------G~vG~~a~qla~~---~Ga~~Vi~~~~~~~~~~~~~-~l-----Ga~~v---i~~~~~~~~~  251 (374)
T 1cdo_A          192 PGSTCA-VFGL-------GAVGLAAVMGCHS---AGAKRIIAVDLNPDKFEKAK-VF-----GATDF---VNPNDHSEPI  251 (374)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHH---TTCSEEEEECSCGGGHHHHH-HT-----TCCEE---ECGGGCSSCH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHH---cCCCEEEEEcCCHHHHHHHH-Hh-----CCceE---EeccccchhH
Confidence            478888 8995       8999999666554   454 444  36666655432 22     22211   34432 1234


Q ss_pred             HHHHHHHHHhCCCccEEEEcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.+.++..  +.+|++|.++|.
T Consensus       252 ~~~~~~~~~--~g~D~vid~~g~  272 (374)
T 1cdo_A          252 SQVLSKMTN--GGVDFSLECVGN  272 (374)
T ss_dssp             HHHHHHHHT--SCBSEEEECSCC
T ss_pred             HHHHHHHhC--CCCCEEEECCCC
Confidence            444444332  479999999984

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=91.68  E-value=0.26  Score=44.36  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=53.0

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCCC
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKPS   83 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~~   83 (292)
                      |.+.+++ |.|+       +|+|.++++.+...+-...+|+..+                   ..|++.+++.+++.+|.
T Consensus        38 L~~~~Vl-vvG~-------GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~  109 (434)
T 1tt5_B           38 LDTCKVL-VIGA-------GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN  109 (434)
T ss_dssp             HHTCCEE-EECS-------STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT
T ss_pred             hcCCEEE-EECc-------CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC
Confidence            4667788 8999       7999999555443322224454221                   25888999999999888


Q ss_pred             CceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEc
Q psy4251          84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLN  119 (292)
Q Consensus        84 ~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~n  119 (292)
                      .++..+..++++..  .++       +...|+||.+
T Consensus       110 v~v~~~~~~i~~~~--~~~-------~~~~DlVi~~  136 (434)
T 1tt5_B          110 CNVVPHFNKIQDFN--DTF-------YRQFHIIVCG  136 (434)
T ss_dssp             CCCEEEESCGGGBC--HHH-------HTTCSEEEEC
T ss_pred             CEEEEEecccchhh--HHH-------hcCCCEEEEC
Confidence            88888887776532  122       1346777775

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=91.50  E-value=0.14  Score=45.08  Aligned_cols=80  Identities=9%  Similarity=-0.073  Sum_probs=45.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCC-hHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCR-LKSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v~~~  102 (292)
                      .|.+++ |+|+       +++|...+..+..++...++++.++.++.+. ++++     +....   .|..+ .+++.+.
T Consensus       193 ~g~~Vl-V~Ga-------G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~-a~~l-----Ga~~v---i~~~~~~~~~~~~  255 (378)
T 3uko_A          193 PGSNVA-IFGL-------GTVGLAVAEGAKTAGASRIIGIDIDSKKYET-AKKF-----GVNEF---VNPKDHDKPIQEV  255 (378)
T ss_dssp             TTCCEE-EECC-------SHHHHHHHHHHHHHTCSCEEEECSCTTHHHH-HHTT-----TCCEE---ECGGGCSSCHHHH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH-HHHc-----CCcEE---EccccCchhHHHH
Confidence            477888 8887       7999999777654432233333467766653 2222     22221   23332 2233333


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.++..  +.+|++|.++|.
T Consensus       256 i~~~~~--gg~D~vid~~g~  273 (378)
T 3uko_A          256 IVDLTD--GGVDYSFECIGN  273 (378)
T ss_dssp             HHHHTT--SCBSEEEECSCC
T ss_pred             HHHhcC--CCCCEEEECCCC
Confidence            333322  379999999984

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=91.46  E-value=0.22  Score=46.89  Aligned_cols=83  Identities=17%  Similarity=0.067  Sum_probs=55.3

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCCC
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKPS   83 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~~   83 (292)
                      |.+.+|+ |.|+       +|+|-++++.+...+-..++|+..+                   ..|++.+++.+++..|.
T Consensus        15 L~~s~Vl-VVGa-------GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~   86 (640)
T 1y8q_B           15 VAGGRVL-VVGA-------GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPK   86 (640)
T ss_dssp             HHHCEEE-EECC-------SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTT
T ss_pred             HhcCeEE-EECc-------CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCC
Confidence            4456788 8999       7999999665443322224444322                   25788888999999888


Q ss_pred             CceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        84 ~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      .++..+..+++.......+       +...|+||.+.
T Consensus        87 v~V~a~~~~i~~~~~~~~~-------~~~~DlVvda~  116 (640)
T 1y8q_B           87 ANIVAYHDSIMNPDYNVEF-------FRQFILVMNAL  116 (640)
T ss_dssp             CEEEEEESCTTSTTSCHHH-------HTTCSEEEECC
T ss_pred             CeEEEEecccchhhhhHhh-------hcCCCEEEECC
Confidence            8999999888653211122       24578888864

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.42  E-value=0.15  Score=44.72  Aligned_cols=77  Identities=14%  Similarity=0.088  Sum_probs=44.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC-hHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR-LKSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v   99 (292)
                      .|++++ |+|+       +|+|..++..+..   .|+ .|+  .++.++.+.+ +++     +... +  .|..+ .+++
T Consensus       191 ~g~~Vl-V~Ga-------G~vG~~a~qla~~---~Ga~~Vi~~~~~~~~~~~~-~~l-----Ga~~-v--i~~~~~~~~~  250 (374)
T 2jhf_A          191 QGSTCA-VFGL-------GGVGLSVIMGCKA---AGAARIIGVDINKDKFAKA-KEV-----GATE-C--VNPQDYKKPI  250 (374)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHH---TTCSEEEEECSCGGGHHHH-HHT-----TCSE-E--ECGGGCSSCH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHH-HHh-----CCce-E--ecccccchhH
Confidence            478888 8994       8999999666554   354 444  3666665443 222     2221 1  34432 1233


Q ss_pred             HHHHHHHHHhCCCccEEEEcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.+.++..  +.+|++|.++|.
T Consensus       251 ~~~~~~~~~--~g~D~vid~~g~  271 (374)
T 2jhf_A          251 QEVLTEMSN--GGVDFSFEVIGR  271 (374)
T ss_dssp             HHHHHHHTT--SCBSEEEECSCC
T ss_pred             HHHHHHHhC--CCCcEEEECCCC
Confidence            333333322  379999999984

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=91.16  E-value=0.25  Score=43.28  Aligned_cols=77  Identities=9%  Similarity=-0.066  Sum_probs=44.9

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      -.|++++ |.|++      +++|...+..+..   .|+.|++ .+.++.+ .++++     +... +  .|..+.+ +  
T Consensus       163 ~~g~~Vl-V~Ga~------G~vG~~a~qla~~---~Ga~Vi~~~~~~~~~-~~~~l-----Ga~~-v--i~~~~~~-~--  220 (371)
T 3gqv_A          163 SKPVYVL-VYGGS------TATATVTMQMLRL---SGYIPIATCSPHNFD-LAKSR-----GAEE-V--FDYRAPN-L--  220 (371)
T ss_dssp             SSCCEEE-EESTT------SHHHHHHHHHHHH---TTCEEEEEECGGGHH-HHHHT-----TCSE-E--EETTSTT-H--
T ss_pred             CCCcEEE-EECCC------cHHHHHHHHHHHH---CCCEEEEEeCHHHHH-HHHHc-----CCcE-E--EECCCch-H--
Confidence            4688888 99999      9999999666553   4555553 3544443 22222     2222 1  2444432 2  


Q ss_pred             HHHHHHHh-CCCccEEEEcccc
Q psy4251         102 FAEEYQKK-FRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~-~~~id~lI~nAg~  122 (292)
                       .+++++. .+++|+++.++|.
T Consensus       221 -~~~v~~~t~g~~d~v~d~~g~  241 (371)
T 3gqv_A          221 -AQTIRTYTKNNLRYALDCITN  241 (371)
T ss_dssp             -HHHHHHHTTTCCCEEEESSCS
T ss_pred             -HHHHHHHccCCccEEEECCCc
Confidence             2233332 2469999999984

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=91.12  E-value=0.24  Score=42.39  Aligned_cols=73  Identities=7%  Similarity=0.049  Sum_probs=43.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      .|.+++ |+||+      +++|...+..+..   .|+.|+. .+.++ .+.++++     +... +  .|..+.+...  
T Consensus       152 ~g~~vl-V~Ga~------G~vG~~a~q~a~~---~Ga~vi~~~~~~~-~~~~~~l-----Ga~~-~--i~~~~~~~~~--  210 (321)
T 3tqh_A          152 QGDVVL-IHAGA------GGVGHLAIQLAKQ---KGTTVITTASKRN-HAFLKAL-----GAEQ-C--INYHEEDFLL--  210 (321)
T ss_dssp             TTCEEE-ESSTT------SHHHHHHHHHHHH---TTCEEEEEECHHH-HHHHHHH-----TCSE-E--EETTTSCHHH--
T ss_pred             CCCEEE-EEcCC------cHHHHHHHHHHHH---cCCEEEEEeccch-HHHHHHc-----CCCE-E--EeCCCcchhh--
Confidence            478888 99988      9999999666553   4555553 34444 3333333     2222 2  2444433111  


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                           +....+|+++.+.|.
T Consensus       211 -----~~~~g~D~v~d~~g~  225 (321)
T 3tqh_A          211 -----AISTPVDAVIDLVGG  225 (321)
T ss_dssp             -----HCCSCEEEEEESSCH
T ss_pred             -----hhccCCCEEEECCCc
Confidence                 122579999999884

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=91.09  E-value=3.4  Score=37.98  Aligned_cols=110  Identities=11%  Similarity=-0.110  Sum_probs=62.4

Q ss_pred             ChHHHHHHHHHHH-HhCCCccEEEEcccccCCCCCCCCcchhhhhh-hhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          95 RLKSVKKFAEEYQ-KKFRSLNILVLNAGVFGLGFSHTEDGFETTFQ-VNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        95 ~~~~v~~~~~~~~-~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~-vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +.+.....+++.. ...+.++.|++-.+....... ..    ..+. ..+.+.+.+++++..   ....  .++.+++..
T Consensus        88 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~~~-~~----~~~~~~g~~~~l~l~qal~~---~~~~--~~l~~vT~g  157 (525)
T 3qp9_A           88 DRQRLAATLGEALAAAGGAVDGVLSLLAWDESAHP-GH----PAPFTRGTGATLTLVQALED---AGVA--APLWCVTHG  157 (525)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCSEEEECGGGCCCBCT-TS----CTTCBHHHHHHHHHHHHHHH---TTCC--SCEEEEEES
T ss_pred             CHHHHHHHHHhhhhcccCCCCeEEEcccCCCCccc-cc----cccccchHHHHHHHHHHHHh---cCCC--CcEEEEECC
Confidence            5555555555322 455678999988776421111 11    1122 345566677777643   2223  678888775


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCC
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCC  234 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG  234 (292)
                      +.....                    .-..-...++++.+|.+.++.|++..-.+...+.+.
T Consensus       158 a~~~~~--------------------~~~~~~p~~a~l~Gl~r~~~~E~p~~~~~~vDl~~~  199 (525)
T 3qp9_A          158 AVSVGR--------------------ADHVTSPAQAMVWGMGRVAALEHPERWGGLIDLPSD  199 (525)
T ss_dssp             CCCCBT--------------------TBCCSCHHHHHHHHHHHHHHHHSTTTEEEEEEECSS
T ss_pred             CEeCCC--------------------CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCC
Confidence            433321                    000113456889999999999998755555666543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=91.05  E-value=0.76  Score=39.98  Aligned_cols=77  Identities=19%  Similarity=0.115  Sum_probs=45.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|+       +|+|...+..+..+.  |+.|+  .++.++.+.+. ++     +....   .|..+.  +.+
T Consensus       186 ~g~~Vl-V~Ga-------G~vG~~avqlak~~~--Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~v---i~~~~~--~~~  244 (359)
T 1h2b_A          186 PGAYVA-IVGV-------GGLGHIAVQLLKVMT--PATVIALDVKEEKLKLAE-RL-----GADHV---VDARRD--PVK  244 (359)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHHC--CCEEEEEESSHHHHHHHH-HT-----TCSEE---EETTSC--HHH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHH-Hh-----CCCEE---Eeccch--HHH
Confidence            478888 9998       689999976655441  44444  46777665432 22     22222   344443  333


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.++.. ...+|++|.++|.
T Consensus       245 ~v~~~~~-g~g~Dvvid~~G~  264 (359)
T 1h2b_A          245 QVMELTR-GRGVNVAMDFVGS  264 (359)
T ss_dssp             HHHHHTT-TCCEEEEEESSCC
T ss_pred             HHHHHhC-CCCCcEEEECCCC
Confidence            3333321 1269999999984

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=90.90  E-value=0.36  Score=42.03  Aligned_cols=73  Identities=12%  Similarity=0.069  Sum_probs=43.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+|+       +|+|...+..+..+   |+.|+  .++.++.+.+.+++     +....   .|..+.+.+  
T Consensus       180 ~g~~Vl-V~Ga-------G~vG~~a~qlak~~---Ga~Vi~~~~~~~~~~~~~~~l-----Ga~~v---i~~~~~~~~--  238 (357)
T 2cf5_A          180 PGLRGG-ILGL-------GGVGHMGVKIAKAM---GHHVTVISSSNKKREEALQDL-----GADDY---VIGSDQAKM--  238 (357)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHH---TCEEEEEESSTTHHHHHHTTS-----CCSCE---EETTCHHHH--
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHHHc-----CCcee---eccccHHHH--
Confidence            578888 8885       89999997766544   44444  46666654433222     22221   244443322  


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                           .+..+.+|++|.++|.
T Consensus       239 -----~~~~~g~D~vid~~g~  254 (357)
T 2cf5_A          239 -----SELADSLDYVIDTVPV  254 (357)
T ss_dssp             -----HHSTTTEEEEEECCCS
T ss_pred             -----HHhcCCCCEEEECCCC
Confidence                 2223479999999984

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=90.89  E-value=0.27  Score=43.16  Aligned_cols=72  Identities=13%  Similarity=0.109  Sum_probs=43.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+|+       +|+|..++..+..+   |+.|+  .++.++.+.+. ++     +....   .|..+.+.+  
T Consensus       194 ~g~~Vl-V~Ga-------G~vG~~aiqlak~~---Ga~Vi~~~~~~~~~~~a~-~l-----Ga~~v---i~~~~~~~~--  251 (369)
T 1uuf_A          194 PGKKVG-VVGI-------GGLGHMGIKLAHAM---GAHVVAFTTSEAKREAAK-AL-----GADEV---VNSRNADEM--  251 (369)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHT---TCEEEEEESSGGGHHHHH-HH-----TCSEE---EETTCHHHH--
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHH-Hc-----CCcEE---eccccHHHH--
Confidence            478888 8887       68999996665543   44444  46766665443 33     22221   355554322  


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                        +++.   +.+|++|.++|.
T Consensus       252 --~~~~---~g~Dvvid~~g~  267 (369)
T 1uuf_A          252 --AAHL---KSFDFILNTVAA  267 (369)
T ss_dssp             --HTTT---TCEEEEEECCSS
T ss_pred             --HHhh---cCCCEEEECCCC
Confidence              2222   579999999985

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=90.85  E-value=0.7  Score=40.36  Aligned_cols=78  Identities=8%  Similarity=-0.054  Sum_probs=43.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|++++ |+|+       +++|...+..+..++...++++.++.++.+.+ +++     +....   .|..+.+ .   .
T Consensus       190 ~g~~Vl-V~Ga-------G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~~v---i~~~~~~-~---~  248 (371)
T 1f8f_A          190 PASSFV-TWGA-------GAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQL-----GATHV---INSKTQD-P---V  248 (371)
T ss_dssp             TTCEEE-EESC-------SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHH-----TCSEE---EETTTSC-H---H
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc-----CCCEE---ecCCccC-H---H
Confidence            477888 8885       89999997765544222223334777776543 333     22222   2333322 2   2


Q ss_pred             HHHHHhC-CCccEEEEcccc
Q psy4251         104 EEYQKKF-RSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~-~~id~lI~nAg~  122 (292)
                      +++.+.. +.+|++|.++|.
T Consensus       249 ~~~~~~~~gg~D~vid~~g~  268 (371)
T 1f8f_A          249 AAIKEITDGGVNFALESTGS  268 (371)
T ss_dssp             HHHHHHTTSCEEEEEECSCC
T ss_pred             HHHHHhcCCCCcEEEECCCC
Confidence            2222222 369999999984

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=90.70  E-value=0.3  Score=42.80  Aligned_cols=77  Identities=16%  Similarity=0.028  Sum_probs=44.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC-hHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR-LKSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~-~~~v   99 (292)
                      .|++++ |+|+       +++|..++..+..   .|+ .|+  .++.++.+.+ +++     +....   .|..+ .+++
T Consensus       195 ~g~~Vl-V~Ga-------G~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~~v---i~~~~~~~~~  254 (376)
T 1e3i_A          195 PGSTCA-VFGL-------GCVGLSAIIGCKI---AGASRIIAIDINGEKFPKA-KAL-----GATDC---LNPRELDKPV  254 (376)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHH---TTCSEEEEECSCGGGHHHH-HHT-----TCSEE---ECGGGCSSCH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHH-HHh-----CCcEE---EccccccchH
Confidence            478888 8995       8999999666554   344 444  3666665443 222     22221   24332 1223


Q ss_pred             HHHHHHHHHhCCCccEEEEcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.+.++..  +.+|++|.++|.
T Consensus       255 ~~~v~~~~~--~g~Dvvid~~G~  275 (376)
T 1e3i_A          255 QDVITELTA--GGVDYSLDCAGT  275 (376)
T ss_dssp             HHHHHHHHT--SCBSEEEESSCC
T ss_pred             HHHHHHHhC--CCccEEEECCCC
Confidence            333333322  479999999984

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=90.66  E-value=0.36  Score=40.52  Aligned_cols=46  Identities=11%  Similarity=-0.001  Sum_probs=33.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKI   77 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l   77 (292)
                      .+++++ |.|+       +|.|++++..+.++....+.|+.|+.++++++++++
T Consensus       118 ~~~~vl-vlGa-------Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~  163 (271)
T 1npy_A          118 KNAKVI-VHGS-------GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY  163 (271)
T ss_dssp             TTSCEE-EECS-------STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCEEE-EECC-------cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence            467788 8898       799999965544443333455669999998887766

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=90.64  E-value=0.5  Score=41.75  Aligned_cols=81  Identities=10%  Similarity=-0.058  Sum_probs=45.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|++++ |.|+       +|+|...+..+..++...++++.++.++.+.+ +++     +..  .  +|.++.+.+.+.+
T Consensus       185 ~g~~Vl-V~Ga-------G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~--~--i~~~~~~~~~~~v  246 (398)
T 1kol_A          185 PGSTVY-VAGA-------GPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQ-----GFE--I--ADLSLDTPLHEQI  246 (398)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT-----TCE--E--EETTSSSCHHHHH
T ss_pred             CCCEEE-EECC-------cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHH-HHc-----CCc--E--EccCCcchHHHHH
Confidence            478888 8995       89999996665544221222234777776543 222     332  2  3444433222222


Q ss_pred             HHHHHhCCCccEEEEccccc
Q psy4251         104 EEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~  123 (292)
                      .++.. ...+|++|.++|..
T Consensus       247 ~~~t~-g~g~Dvvid~~G~~  265 (398)
T 1kol_A          247 AALLG-EPEVDCAVDAVGFE  265 (398)
T ss_dssp             HHHHS-SSCEEEEEECCCTT
T ss_pred             HHHhC-CCCCCEEEECCCCc
Confidence            22211 12699999999853

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=90.42  E-value=0.72  Score=40.88  Aligned_cols=75  Identities=12%  Similarity=0.092  Sum_probs=43.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .|.+++ |+|+       +++|...+..+..   .|+ .|++  ++.++.+. ++++     +....   .|-.+.+   
T Consensus       213 ~g~~Vl-V~Ga-------G~vG~~aiqlak~---~Ga~~Vi~~~~~~~~~~~-~~~l-----Ga~~v---i~~~~~~---  269 (404)
T 3ip1_A          213 PGDNVV-ILGG-------GPIGLAAVAILKH---AGASKVILSEPSEVRRNL-AKEL-----GADHV---IDPTKEN---  269 (404)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHH---TTCSEEEEECSCHHHHHH-HHHH-----TCSEE---ECTTTSC---
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHH---cCCCEEEEECCCHHHHHH-HHHc-----CCCEE---EcCCCCC---
Confidence            478888 8997       7999999666553   354 4443  66666543 3333     32222   2444332   


Q ss_pred             HHHHHHHHhC-C-CccEEEEcccc
Q psy4251         101 KFAEEYQKKF-R-SLNILVLNAGV  122 (292)
Q Consensus       101 ~~~~~~~~~~-~-~id~lI~nAg~  122 (292)
                       +.+++.+.. + .+|++|.++|.
T Consensus       270 -~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          270 -FVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             -HHHHHHHHTTTCCCSEEEECSSC
T ss_pred             -HHHHHHHHhCCCCCCEEEECCCC
Confidence             223333322 2 69999999984

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=90.30  E-value=4.4  Score=35.09  Aligned_cols=126  Identities=10%  Similarity=-0.034  Sum_probs=64.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC----cEEEE--c--CHHHHHHHHHHHHhhCCCCceEEEEcc
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLFYQ--N--CWDKANDAISKILTEKPSAQCIAMELD   92 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v~~--r--~~~~~~~~~~~l~~~~~~~~~~~~~~D   92 (292)
                      .+.+.-++. |+||+      ++||..++-.+..-.--+    ..+..  .  ..++++...-+|...........+..+
T Consensus        20 ~s~~~vKVa-ViGAa------G~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~   92 (345)
T 4h7p_A           20 GSMSAVKVA-VTGAA------GQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTA   92 (345)
T ss_dssp             --CCCEEEE-EESTT------SHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEES
T ss_pred             CCCCCCEEE-EECcC------cHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcC
Confidence            334455788 99999      999999954433211112    12332  2  235566666667653211222222211


Q ss_pred             CCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          93 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        93 ls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                        +..          +.+..-|++|..||....+. ++.   +..++.|.-    +.+.+.+.+.+...+..+|+.+|..
T Consensus        93 --~~~----------~a~~~advVvi~aG~prkpG-mtR---~DLl~~Na~----I~~~~~~~i~~~a~~~~~vlvvsNP  152 (345)
T 4h7p_A           93 --DPR----------VAFDGVAIAIMCGAFPRKAG-MER---KDLLEMNAR----IFKEQGEAIAAVAASDCRVVVVGNP  152 (345)
T ss_dssp             --CHH----------HHTTTCSEEEECCCCCCCTT-CCH---HHHHHHHHH----HHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             --ChH----------HHhCCCCEEEECCCCCCCCC-CCH---HHHHHHhHH----HHHHHHHHHHhhccCceEEEEeCCC
Confidence              111          12356899999999864332 233   344666644    4455555555432111567777766


Q ss_pred             c
Q psy4251         173 S  173 (292)
Q Consensus       173 ~  173 (292)
                      .
T Consensus       153 v  153 (345)
T 4h7p_A          153 A  153 (345)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=90.30  E-value=0.24  Score=43.40  Aligned_cols=77  Identities=19%  Similarity=0.100  Sum_probs=43.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh-HHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRL-KSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~-~~v   99 (292)
                      .|++++ |+|+       +++|..++..+..+   |+ .|+  .++.++.+.+. ++     +....   .|..+. +++
T Consensus       191 ~g~~Vl-V~Ga-------G~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~-~l-----Ga~~v---i~~~~~~~~~  250 (373)
T 1p0f_A          191 PGSTCA-VFGL-------GGVGFSAIVGCKAA---GASRIIGVGTHKDKFPKAI-EL-----GATEC---LNPKDYDKPI  250 (373)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHH---TCSEEEEECSCGGGHHHHH-HT-----TCSEE---ECGGGCSSCH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHc---CCCeEEEECCCHHHHHHHH-Hc-----CCcEE---EecccccchH
Confidence            478888 8895       89999997765544   44 343  36666654432 22     32221   233321 223


Q ss_pred             HHHHHHHHHhCCCccEEEEcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+.+.++..  +.+|++|.++|.
T Consensus       251 ~~~i~~~t~--gg~Dvvid~~g~  271 (373)
T 1p0f_A          251 YEVICEKTN--GGVDYAVECAGR  271 (373)
T ss_dssp             HHHHHHHTT--SCBSEEEECSCC
T ss_pred             HHHHHHHhC--CCCCEEEECCCC
Confidence            333333322  479999999984

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=90.23  E-value=0.15  Score=42.81  Aligned_cols=43  Identities=9%  Similarity=-0.177  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKI   77 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l   77 (292)
                      ||+++ |.|+       +|.|++++..+.+++ ..+.|+.|+.+++++++ ++
T Consensus       118 ~k~vl-vlGa-------GGaaraia~~L~~~G-~~v~V~nRt~~ka~~la-~~  160 (269)
T 3phh_A          118 YQNAL-ILGA-------GGSAKALACELKKQG-LQVSVLNRSSRGLDFFQ-RL  160 (269)
T ss_dssp             CCEEE-EECC-------SHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHH-HH
T ss_pred             CCEEE-EECC-------CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HC
Confidence            88898 8898       799999966555443 33444569988888777 54

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.63  E-value=0.31  Score=43.39  Aligned_cols=41  Identities=5%  Similarity=-0.094  Sum_probs=28.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDA   73 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~   73 (292)
                      .+.|++++ |.|+       +++|..+++.+..+   |+.|+  .++.++++.+
T Consensus       169 ~l~g~~V~-ViGa-------G~iG~~aa~~a~~~---Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          169 KVPPAKVM-VIGA-------GVAGLAAIGAANSL---GAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             EECCCEEE-EECC-------SHHHHHHHHHHHHT---TCEEEEECSCGGGHHHH
T ss_pred             CcCCCEEE-EECC-------CHHHHHHHHHHHHC---CCEEEEEcCCHHHHHHH
Confidence            46789999 9998       79999996665544   44554  3666665553

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=89.57  E-value=1.4  Score=37.90  Aligned_cols=80  Identities=14%  Similarity=0.067  Sum_probs=44.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|++++ |.|+       +|+|...+..+..++....+++.++.++.+. ++++     +....   .|-++. +..+..
T Consensus       160 ~g~~Vl-V~Ga-------G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~-a~~l-----Ga~~~---i~~~~~-~~~~~~  221 (346)
T 4a2c_A          160 ENKNVI-IIGA-------GTIGLLAIQCAVALGAKSVTAIDISSEKLAL-AKSF-----GAMQT---FNSSEM-SAPQMQ  221 (346)
T ss_dssp             TTSEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEEESCHHHHHH-HHHT-----TCSEE---EETTTS-CHHHHH
T ss_pred             CCCEEE-EECC-------CCcchHHHHHHHHcCCcEEEEEechHHHHHH-HHHc-----CCeEE---EeCCCC-CHHHHH
Confidence            478888 8887       7899988665554433323344577776543 2323     33322   233332 223344


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      +++.. ....|+++.++|.
T Consensus       222 ~~~~~-~~g~d~v~d~~G~  239 (346)
T 4a2c_A          222 SVLRE-LRFNQLILETAGV  239 (346)
T ss_dssp             HHHGG-GCSSEEEEECSCS
T ss_pred             Hhhcc-cCCcccccccccc
Confidence            44433 2468999998874

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=89.38  E-value=2  Score=37.00  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=44.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|+       +|+|..++..+..+. .|+.|+  .++.++.+.+. ++     +....   .|..+.   .+
T Consensus       170 ~g~~Vl-V~Ga-------G~vG~~aiqlak~~~-~Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~v---i~~~~~---~~  228 (344)
T 2h6e_A          170 AEPVVI-VNGI-------GGLAVYTIQILKALM-KNITIVGISRSKKHRDFAL-EL-----GADYV---SEMKDA---ES  228 (344)
T ss_dssp             SSCEEE-EECC-------SHHHHHHHHHHHHHC-TTCEEEEECSCHHHHHHHH-HH-----TCSEE---ECHHHH---HH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHH-Hh-----CCCEE---eccccc---hH
Confidence            588898 9998       799999977655440 044554  36777665432 33     22221   232220   22


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+++.. ...+|++|.++|.
T Consensus       229 ~~~~~~~-g~g~D~vid~~g~  248 (344)
T 2h6e_A          229 LINKLTD-GLGASIAIDLVGT  248 (344)
T ss_dssp             HHHHHHT-TCCEEEEEESSCC
T ss_pred             HHHHhhc-CCCccEEEECCCC
Confidence            3344432 2269999999984

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=89.13  E-value=5.6  Score=34.82  Aligned_cols=123  Identities=10%  Similarity=0.036  Sum_probs=67.2

Q ss_pred             CCCCC-CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc------E-EEE----cCHHHHHHHHHHHHhhCCCCceE
Q psy4251          20 ASTYN-GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK------L-FYQ----NCWDKANDAISKILTEKPSAQCI   87 (292)
Q Consensus        20 ~~~l~-g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~------~-v~~----r~~~~~~~~~~~l~~~~~~~~~~   87 (292)
                      .+.++ ..++. |+||+      +++|..+   +..++..+.      . ++.    ++.++++..+.+|....... ..
T Consensus        26 ~~~~~~~~KV~-ViGAa------G~VG~~l---a~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~-~~   94 (375)
T 7mdh_A           26 TKSWKKLVNIA-VSGAA------GMISNHL---LFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-LR   94 (375)
T ss_dssp             ---CCCCEEEE-EETTT------SHHHHHH---HHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EE
T ss_pred             HhhCCCCCEEE-EECCC------ChHHHHH---HHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhh-cC
Confidence            34443 45677 99988      9999999   444544432      2 322    35667787788887643111 11


Q ss_pred             EEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc--CCCCcE
Q psy4251          88 AMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFAR  165 (292)
Q Consensus        88 ~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~--~~~~~~  165 (292)
                        ...+++.         -.+.+..-|++|..||....+. ++   ....++.|.-    +.+...+.+.+.  +.  +.
T Consensus        95 --~v~i~~~---------~y~~~~daDvVVitag~prkpG-~t---R~DLl~~N~~----I~k~i~~~i~~~a~p~--~i  153 (375)
T 7mdh_A           95 --EVSIGID---------PYEVFEDVDWALLIGAKPRGPG-ME---RAALLDINGQ----IFADQGKALNAVASKN--VK  153 (375)
T ss_dssp             --EEEEESC---------HHHHTTTCSEEEECCCCCCCTT-CC---HHHHHHHHHH----HHHHHHHHHHHHSCTT--CE
T ss_pred             --CcEEecC---------CHHHhCCCCEEEEcCCCCCCCC-CC---HHHHHHHHHH----HHHHHHHHHHHhcCCC--eE
Confidence              1111211         1223456899999999753222 22   3445555543    445555555542  44  88


Q ss_pred             EEEEcCccc
Q psy4251         166 VVVVSSESH  174 (292)
Q Consensus       166 iV~vsS~~~  174 (292)
                      |+++|...-
T Consensus       154 vlVvsNPvD  162 (375)
T 7mdh_A          154 VLVVGNPCN  162 (375)
T ss_dssp             EEECSSSHH
T ss_pred             EEEecCchh
Confidence            888887643

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=89.13  E-value=0.081  Score=44.65  Aligned_cols=45  Identities=13%  Similarity=0.158  Sum_probs=30.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDA   73 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~   73 (292)
                      .+++||+++ |+|+       +|+|++++..+.+++...+.|+.|+.++++++
T Consensus       113 ~~l~~k~vl-vlGa-------Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l  157 (277)
T 3don_A          113 EGIEDAYIL-ILGA-------GGASKGIANELYKIVRPTLTVANRTMSRFNNW  157 (277)
T ss_dssp             TTGGGCCEE-EECC-------SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred             CCcCCCEEE-EECC-------cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            457899999 9998       79999995554433222345556887765543

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=89.08  E-value=5.1  Score=34.20  Aligned_cols=117  Identities=14%  Similarity=0.075  Sum_probs=64.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcC--HHHHHHHHHHHHhhCC----CCceEEEEccCC
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNC--WDKANDAISKILTEKP----SAQCIAMELDLC   94 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~--~~~~~~~~~~l~~~~~----~~~~~~~~~Dls   94 (292)
                      +.+++. |.|+       +.+|..+   +..++..|+ .|+  .++  .++++....++.+..+    ..++.. ..   
T Consensus         7 ~~~kv~-ViGa-------G~vG~~i---a~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~-t~---   71 (315)
T 3tl2_A            7 KRKKVS-VIGA-------GFTGATT---AFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG-TS---   71 (315)
T ss_dssp             CCCEEE-EECC-------SHHHHHH---HHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE-ES---
T ss_pred             CCCEEE-EECC-------CHHHHHH---HHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE-cC---
Confidence            356677 8886       7999999   444555665 544  366  5566655555543311    122222 11   


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      +.           +.+..-|++|.+||....+. .+   ....+..|.--...+.+.+..+   .+.  +.|+++|....
T Consensus        72 d~-----------~a~~~aDvVIiaag~p~kpg-~~---R~dl~~~N~~i~~~i~~~i~~~---~p~--a~vlvvsNPvd  131 (315)
T 3tl2_A           72 DY-----------ADTADSDVVVITAGIARKPG-MS---RDDLVATNSKIMKSITRDIAKH---SPN--AIIVVLTNPVD  131 (315)
T ss_dssp             CG-----------GGGTTCSEEEECCSCCCCTT-CC---HHHHHHHHHHHHHHHHHHHHHH---CTT--CEEEECCSSHH
T ss_pred             CH-----------HHhCCCCEEEEeCCCCCCCC-CC---HHHHHHHHHHHHHHHHHHHHHh---CCC--eEEEECCChHH
Confidence            11           12356899999999754322 22   2344555554444444444332   244  88888887644


Q ss_pred             c
Q psy4251         175 R  175 (292)
Q Consensus       175 ~  175 (292)
                      .
T Consensus       132 ~  132 (315)
T 3tl2_A          132 A  132 (315)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=88.74  E-value=2.1  Score=36.75  Aligned_cols=117  Identities=12%  Similarity=0.030  Sum_probs=62.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCC----CCceEEEEccCCCh
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKP----SAQCIAMELDLCRL   96 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dls~~   96 (292)
                      +.+.+. |.|+       +.+|.++   +..++..++ .|+  .+++++++....++.+..+    ..++.. ..|   .
T Consensus         6 ~~~kI~-viGa-------G~vG~~~---a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d---~   70 (324)
T 3gvi_A            6 ARNKIA-LIGS-------GMIGGTL---AHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AND---Y   70 (324)
T ss_dssp             CCCEEE-EECC-------SHHHHHH---HHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESS---G
T ss_pred             cCCEEE-EECC-------CHHHHHH---HHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCC---H
Confidence            345677 8887       7899999   444555554 444  4666666655555554311    223322 112   1


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHR  175 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~  175 (292)
                      +           .+..-|++|.++|....+. .+..   ..+..|.-    +.+.+.+.+.+. +.  +.|+++|.....
T Consensus        71 ~-----------a~~~aDiVIiaag~p~k~G-~~R~---dl~~~N~~----i~~~i~~~i~~~~p~--a~iivvtNPvd~  129 (324)
T 3gvi_A           71 A-----------AIEGADVVIVTAGVPRKPG-MSRD---DLLGINLK----VMEQVGAGIKKYAPE--AFVICITNPLDA  129 (324)
T ss_dssp             G-----------GGTTCSEEEECCSCCCC------C---HHHHHHHH----HHHHHHHHHHHHCTT--CEEEECCSSHHH
T ss_pred             H-----------HHCCCCEEEEccCcCCCCC-CCHH---HHHHhhHH----HHHHHHHHHHHHCCC--eEEEecCCCcHH
Confidence            1           1245799999999753322 2322   23444443    344444444433 34  888888876544


Q ss_pred             c
Q psy4251         176 Y  176 (292)
Q Consensus       176 ~  176 (292)
                      .
T Consensus       130 ~  130 (324)
T 3gvi_A          130 M  130 (324)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=88.60  E-value=3  Score=35.50  Aligned_cols=115  Identities=14%  Similarity=0.080  Sum_probs=64.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC----cEEEEcCHHHHHHHHHHHHhhCC-CCceEEEEccCCChHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLFYQNCWDKANDAISKILTEKP-SAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++. |+|+       +.+|..++.   .++..+    ..++..+.++++..+.++.+..+ ...+.+.. |  +.+.   
T Consensus         2 KI~-IiGa-------G~vG~~~a~---~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~~~a---   64 (310)
T 2xxj_A            2 KVG-IVGS-------GMVGSATAY---ALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--SYGD---   64 (310)
T ss_dssp             EEE-EECC-------SHHHHHHHH---HHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--CGGG---
T ss_pred             EEE-EECC-------CHHHHHHHH---HHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--CHHH---
Confidence            456 7887       689999944   444444    33445788888877777765421 11222222 2  2222   


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHRY  176 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~~  176 (292)
                              +..-|++|..+|....+. .+.   ...+..|.-    +++.+.+.+.+. +.  +.|+++|......
T Consensus        65 --------~~~aD~Vii~ag~~~~~g-~~r---~dl~~~n~~----i~~~i~~~i~~~~p~--a~iiv~tNPv~~~  122 (310)
T 2xxj_A           65 --------LEGARAVVLAAGVAQRPG-ETR---LQLLDRNAQ----VFAQVVPRVLEAAPE--AVLLVATNPVDVM  122 (310)
T ss_dssp             --------GTTEEEEEECCCCCCCTT-CCH---HHHHHHHHH----HHHHHHHHHHHHCTT--CEEEECSSSHHHH
T ss_pred             --------hCCCCEEEECCCCCCCCC-cCH---HHHHHhhHH----HHHHHHHHHHHHCCC--cEEEEecCchHHH
Confidence                    246899999999754322 222   223444443    344444444433 44  8899887765443

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=88.60  E-value=3.4  Score=34.87  Aligned_cols=114  Identities=11%  Similarity=0.045  Sum_probs=61.5

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EE--EEcCHHHHHHHHHHHHhh---CC-CCceEEEEccCCChHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LF--YQNCWDKANDAISKILTE---KP-SAQCIAMELDLCRLKS   98 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v--~~r~~~~~~~~~~~l~~~---~~-~~~~~~~~~Dls~~~~   98 (292)
                      ++. |.|+       +.+|.+++..   ++..+.  .|  +.+++++++....++.+.   ++ ..++.. ..|   .+.
T Consensus         2 kI~-ViGa-------G~vG~~la~~---l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~-t~d---~~a   66 (294)
T 1oju_A            2 KLG-FVGA-------GRVGSTSAFT---CLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-GAD---YSL   66 (294)
T ss_dssp             EEE-EECC-------SHHHHHHHHH---HHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE-ESC---GGG
T ss_pred             EEE-EECC-------CHHHHHHHHH---HHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE-eCC---HHH
Confidence            355 7888       6899999544   445554  33  457888776544444432   21 112221 112   221


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                                 ...-|++|.+||....+. .+   ....+..|.    -+.+.+.+.+.+..+ .+.|+++|.....
T Consensus        67 -----------~~~aDiVViaag~~~kpG-~~---R~dl~~~N~----~i~~~i~~~i~~~~p-~a~iivvsNPvd~  123 (294)
T 1oju_A           67 -----------LKGSEIIVVTAGLARKPG-MT---RLDLAHKNA----GIIKDIAKKIVENAP-ESKILVVTNPMDV  123 (294)
T ss_dssp             -----------GTTCSEEEECCCCCCCSS-CC---HHHHHHHHH----HHHHHHHHHHHTTST-TCEEEECSSSHHH
T ss_pred             -----------hCCCCEEEECCCCCCCCC-Cc---HHHHHHHHH----HHHHHHHHHHHhhCC-CeEEEEeCCcchH
Confidence                       235799999999753222 12   233455553    344555555555432 2888888876443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=88.52  E-value=0.52  Score=40.89  Aligned_cols=78  Identities=12%  Similarity=-0.021  Sum_probs=42.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |+|+       +++|...+..+..++...++++.++.++.+ .++++     +....   .|-.+.+    +.
T Consensus       166 ~g~~Vl-V~Ga-------G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~-~~~~l-----Ga~~v---i~~~~~~----~~  224 (352)
T 3fpc_A          166 LGDTVC-VIGI-------GPVGLMSVAGANHLGAGRIFAVGSRKHCCD-IALEY-----GATDI---INYKNGD----IV  224 (352)
T ss_dssp             TTCCEE-EECC-------SHHHHHHHHHHHTTTCSSEEEECCCHHHHH-HHHHH-----TCCEE---ECGGGSC----HH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCcEEEEECCCHHHHH-HHHHh-----CCceE---EcCCCcC----HH
Confidence            477888 8885       899999966654332112223336666554 33333     32221   2333322    23


Q ss_pred             HHHHHhCC--CccEEEEcccc
Q psy4251         104 EEYQKKFR--SLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~--~id~lI~nAg~  122 (292)
                      +++.+..+  .+|+++.++|.
T Consensus       225 ~~v~~~t~g~g~D~v~d~~g~  245 (352)
T 3fpc_A          225 EQILKATDGKGVDKVVIAGGD  245 (352)
T ss_dssp             HHHHHHTTTCCEEEEEECSSC
T ss_pred             HHHHHHcCCCCCCEEEECCCC
Confidence            33333322  59999999884

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=88.12  E-value=1.1  Score=39.46  Aligned_cols=80  Identities=9%  Similarity=-0.024  Sum_probs=44.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |.|+       +|+|...+..+..++...++++.++.++.+.+    ++.  +.  ..  +|..+.+.+.+.+
T Consensus       185 ~g~~Vl-V~Ga-------G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a----~~l--Ga--~~--i~~~~~~~~~~~~  246 (398)
T 2dph_A          185 PGSHVY-IAGA-------GPVGRCAAAGARLLGAACVIVGDQNPERLKLL----SDA--GF--ET--IDLRNSAPLRDQI  246 (398)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH----HTT--TC--EE--EETTSSSCHHHHH
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----HHc--CC--cE--EcCCCcchHHHHH
Confidence            478888 8995       79999997765544221223334777776543    222  33  22  3444432212222


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      .++.. ...+|++|.++|.
T Consensus       247 ~~~~~-g~g~Dvvid~~g~  264 (398)
T 2dph_A          247 DQILG-KPEVDCGVDAVGF  264 (398)
T ss_dssp             HHHHS-SSCEEEEEECSCT
T ss_pred             HHHhC-CCCCCEEEECCCC
Confidence            22211 1269999999985

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=88.03  E-value=1.5  Score=37.71  Aligned_cols=104  Identities=12%  Similarity=0.037  Sum_probs=56.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|++++ |.|+       +++|...+..+..+.....+++.++.++.+.+ +++     +.... +  |-.+ +..+. +
T Consensus       171 ~g~~vl-v~Ga-------G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~-~~l-----Ga~~~-i--~~~~-~~~~~-v  231 (345)
T 3jv7_A          171 PGSTAV-VIGV-------GGLGHVGIQILRAVSAARVIAVDLDDDRLALA-REV-----GADAA-V--KSGA-GAADA-I  231 (345)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH-HHT-----TCSEE-E--ECST-THHHH-H
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHc-----CCCEE-E--cCCC-cHHHH-H
Confidence            477888 8887       79999997665544233233334777776543 222     22222 2  2222 22222 2


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      .++.. ...+|+++.++|..                       ...+..+..++.  .  |+++.++....
T Consensus       232 ~~~t~-g~g~d~v~d~~G~~-----------------------~~~~~~~~~l~~--~--G~iv~~G~~~~  274 (345)
T 3jv7_A          232 RELTG-GQGATAVFDFVGAQ-----------------------STIDTAQQVVAV--D--GHISVVGIHAG  274 (345)
T ss_dssp             HHHHG-GGCEEEEEESSCCH-----------------------HHHHHHHHHEEE--E--EEEEECSCCTT
T ss_pred             HHHhC-CCCCeEEEECCCCH-----------------------HHHHHHHHHHhc--C--CEEEEECCCCC
Confidence            22211 12699999999842                       023344444443  3  89999986543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=87.93  E-value=0.28  Score=43.40  Aligned_cols=41  Identities=7%  Similarity=-0.121  Sum_probs=28.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDA   73 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~   73 (292)
                      ++.|++++ |.|+       +++|+.+++.+..+   |+.|+  .++.++.+.+
T Consensus       169 ~l~g~~V~-ViGa-------G~iG~~aa~~a~~~---Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          169 TVPPARVL-VFGV-------GVAGLQAIATAKRL---GAVVMATDVRAATKEQV  211 (384)
T ss_dssp             EECCCEEE-EECC-------SHHHHHHHHHHHHT---TCEEEEECSCSTTHHHH
T ss_pred             CCCCCEEE-EECC-------CHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHH
Confidence            57899999 9997       79999996665544   44444  3665555543

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=87.90  E-value=4.5  Score=34.48  Aligned_cols=120  Identities=13%  Similarity=0.035  Sum_probs=62.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHH--hhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDL--VQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l--~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      ++. |+||+      +.+|..++..+..-  ......++..+. +++....++.......++..+.. -.+.+.      
T Consensus         2 KV~-IiGAa------G~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~------   66 (312)
T 3hhp_A            2 KVA-VLGAA------GGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSG-EDATPA------   66 (312)
T ss_dssp             EEE-EETTT------SHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECS-SCCHHH------
T ss_pred             EEE-EECCC------CHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecC-CCcHHH------
Confidence            456 89988      99999995543221  011233333444 34445556654311112222111 011111      


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                           +...|++|.+||....+.    +.....++.|.--...+.+.+..+   .++  +.|+++|.....
T Consensus        67 -----~~~aDivii~ag~~rkpG----~~R~dll~~N~~I~~~i~~~i~~~---~p~--a~vlvvtNPvd~  123 (312)
T 3hhp_A           67 -----LEGADVVLISAGVARKPG----MDRSDLFNVNAGIVKNLVQQVAKT---CPK--ACIGIITNPVNT  123 (312)
T ss_dssp             -----HTTCSEEEECCSCSCCTT----CCHHHHHHHHHHHHHHHHHHHHHH---CTT--SEEEECSSCHHH
T ss_pred             -----hCCCCEEEEeCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHH---CCC--cEEEEecCcchh
Confidence                 245899999999753222    223455666665444444444332   244  888888876443

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=87.61  E-value=0.58  Score=40.75  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=43.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|+       +|+|..++..+..+   |+.|+  .++.++.+.+. ++     +....   .|..+..   +
T Consensus       179 ~g~~Vl-V~Ga-------G~vG~~~~qlak~~---Ga~Vi~~~~~~~~~~~~~-~l-----Ga~~v---~~~~~~~---~  235 (360)
T 1piw_A          179 PGKKVG-IVGL-------GGIGSMGTLISKAM---GAETYVISRSSRKREDAM-KM-----GADHY---IATLEEG---D  235 (360)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHH---TCEEEEEESSSTTHHHHH-HH-----TCSEE---EEGGGTS---C
T ss_pred             CCCEEE-EECC-------CHHHHHHHHHHHHC---CCEEEEEcCCHHHHHHHH-Hc-----CCCEE---EcCcCch---H
Confidence            478888 9998       69999997765544   44444  46666654433 23     22222   2333220   1


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+++.   +.+|++|.++|.
T Consensus       236 ~~~~~~---~~~D~vid~~g~  253 (360)
T 1piw_A          236 WGEKYF---DTFDLIVVCASS  253 (360)
T ss_dssp             HHHHSC---SCEEEEEECCSC
T ss_pred             HHHHhh---cCCCEEEECCCC
Confidence            222232   579999999985

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=87.49  E-value=0.41  Score=46.66  Aligned_cols=61  Identities=16%  Similarity=0.100  Sum_probs=45.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC-------------------HHHHHHHHHHHHhhC
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC-------------------WDKANDAISKILTEK   81 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~-------------------~~~~~~~~~~l~~~~   81 (292)
                      ++.+|+ |.|+       +|+|-.+   +..|+..|+   +|+..+                   ..|++.+++.+++.+
T Consensus       410 ~~~~vl-vvG~-------GglG~~~---~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~n  478 (805)
T 2nvu_B          410 DTCKVL-VIGA-------GGLGCEL---LKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV  478 (805)
T ss_dssp             HTCCEE-EECC-------SSHHHHH---HHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS
T ss_pred             hCCeEE-EECC-------CHHHHHH---HHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHC
Confidence            567788 8999       7999999   445555553   333322                   357888899999998


Q ss_pred             CCCceEEEEccCCC
Q psy4251          82 PSAQCIAMELDLCR   95 (292)
Q Consensus        82 ~~~~~~~~~~Dls~   95 (292)
                      |..++..+..++++
T Consensus       479 p~~~v~~~~~~~~~  492 (805)
T 2nvu_B          479 PNCNVVPHFNKIQD  492 (805)
T ss_dssp             TTCEEEEEESCGGG
T ss_pred             CCCEEEEEeccccc
Confidence            88888888877765

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=87.37  E-value=0.33  Score=42.08  Aligned_cols=67  Identities=15%  Similarity=0.099  Sum_probs=41.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+|+       +++|...+..+..   .|+.|++  ++.++.+.+ +++     +....+     ++.+.+.+
T Consensus       176 ~g~~Vl-V~Ga-------G~vG~~a~qla~~---~Ga~Vi~~~~~~~~~~~~-~~l-----Ga~~v~-----~~~~~~~~  233 (348)
T 3two_A          176 KGTKVG-VAGF-------GGLGSMAVKYAVA---MGAEVSVFARNEHKKQDA-LSM-----GVKHFY-----TDPKQCKE  233 (348)
T ss_dssp             TTCEEE-EESC-------SHHHHHHHHHHHH---TTCEEEEECSSSTTHHHH-HHT-----TCSEEE-----SSGGGCCS
T ss_pred             CCCEEE-EECC-------cHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHH-Hhc-----CCCeec-----CCHHHHhc
Confidence            478888 8886       7999999666553   3555554  566655433 222     333322     33333221


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                                .+|+++.++|.
T Consensus       234 ----------~~D~vid~~g~  244 (348)
T 3two_A          234 ----------ELDFIISTIPT  244 (348)
T ss_dssp             ----------CEEEEEECCCS
T ss_pred             ----------CCCEEEECCCc
Confidence                      69999999884

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=87.25  E-value=0.98  Score=39.54  Aligned_cols=45  Identities=11%  Similarity=0.005  Sum_probs=33.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKI   77 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l   77 (292)
                      +|+||+++ |.|.       +.+|..+|+.   |.+.|+.|++  ++.+++++.++++
T Consensus       170 ~L~GktV~-V~G~-------G~VG~~~A~~---L~~~GakVvv~D~~~~~l~~~a~~~  216 (364)
T 1leh_A          170 SLEGLAVS-VQGL-------GNVAKALCKK---LNTEGAKLVVTDVNKAAVSAAVAEE  216 (364)
T ss_dssp             CCTTCEEE-EECC-------SHHHHHHHHH---HHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred             CCCcCEEE-EECc-------hHHHHHHHHH---HHHCCCEEEEEcCCHHHHHHHHHHc
Confidence            78999999 9998       6899999555   5556666654  6777776666554

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=87.15  E-value=0.41  Score=41.67  Aligned_cols=25  Identities=16%  Similarity=0.126  Sum_probs=20.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDL   55 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l   55 (292)
                      .|++++ |+||+      +|+|...+..+..+
T Consensus       167 ~g~~Vl-V~Ga~------G~vG~~aiqlak~~  191 (357)
T 1zsy_A          167 PGDSVI-QNASN------SGVGQAVIQIAAAL  191 (357)
T ss_dssp             TTCEEE-ESSTT------SHHHHHHHHHHHHH
T ss_pred             CCCEEE-EeCCc------CHHHHHHHHHHHHc
Confidence            478888 99999      99999997765544

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=87.04  E-value=4.1  Score=34.98  Aligned_cols=115  Identities=11%  Similarity=0.076  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC----cEEEEcCHHHHHHHHHHHHhhCC-CCceEEEEccCCChHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLFYQNCWDKANDAISKILTEKP-SAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~  100 (292)
                      .++. |+|+       +.+|..++..   +...+    ..++..+.++++..+.++.+..+ ...+.+.. |  +.+.  
T Consensus        10 ~KI~-IiGa-------G~vG~~la~~---l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~~~a--   73 (326)
T 2zqz_A           10 QKVI-LVGD-------GAVGSSYAYA---MVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--EYSD--   73 (326)
T ss_dssp             CEEE-EECC-------SHHHHHHHHH---HHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--CGGG--
T ss_pred             CEEE-EECC-------CHHHHHHHHH---HHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--CHHH--
Confidence            4677 8887       7999999544   44444    33344788888887777765421 11222222 2  2222  


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHR  175 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~  175 (292)
                               +..-|++|..+|....+. .+.   ...+..|.-    +++.+.+.+.+. +.  +.|+++|.....
T Consensus        74 ---------~~~aDvVii~ag~~~k~g-~~R---~dl~~~n~~----i~~~i~~~i~~~~p~--a~iiv~tNPv~~  130 (326)
T 2zqz_A           74 ---------AKDADLVVITAGAPQKPG-ETR---LDLVNKNLK----ILKSIVDPIVDSGFN--GIFLVAANPVDI  130 (326)
T ss_dssp             ---------GGGCSEEEECCCCC------CH---HHHHHHHHH----HHHHHHHHHHHHTCC--SEEEECSSSHHH
T ss_pred             ---------hCCCCEEEEcCCCCCCCC-CCH---HHHHHHHHH----HHHHHHHHHHHHCCC--eEEEEeCCcHHH
Confidence                     235799999999753221 122   233444443    344444444433 44  888888776544

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=86.58  E-value=0.55  Score=40.82  Aligned_cols=76  Identities=12%  Similarity=0.103  Sum_probs=42.8

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhH-HHHH-HHHhhcC-cEEEEcCHH---HHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKD-GNLC-FDLVQSS-KLFYQNCWD---KANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~-a~~~-~~l~~~g-~~v~~r~~~---~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      +.+++++ |+|+       +|+|... +..+ ..+ ... .+++.++.+   +.+.+ +++     +.  ..+  |..+.
T Consensus       171 ~~~~~Vl-V~Ga-------G~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~-~~l-----Ga--~~v--~~~~~  231 (357)
T 2b5w_A          171 WDPSSAF-VLGN-------GSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDII-EEL-----DA--TYV--DSRQT  231 (357)
T ss_dssp             CCCCEEE-EECC-------SHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHH-HHT-----TC--EEE--ETTTS
T ss_pred             CCCCEEE-EECC-------CHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHH-HHc-----CC--ccc--CCCcc
Confidence            4448888 9998       6899988 6665 432 222 333346655   55433 222     22  222  54432


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                       ++.+ +.++   .+.+|++|.++|.
T Consensus       232 -~~~~-i~~~---~gg~Dvvid~~g~  252 (357)
T 2b5w_A          232 -PVED-VPDV---YEQMDFIYEATGF  252 (357)
T ss_dssp             -CGGG-HHHH---SCCEEEEEECSCC
T ss_pred             -CHHH-HHHh---CCCCCEEEECCCC
Confidence             2233 4444   2379999999984

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=86.25  E-value=3.6  Score=35.26  Aligned_cols=114  Identities=10%  Similarity=0.041  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEE--EcCHHHHHHHHHHHHhhCC----CCceEEEEccCCChHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFY--QNCWDKANDAISKILTEKP----SAQCIAMELDLCRLKS   98 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~--~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dls~~~~   98 (292)
                      +++. |.|+       +.+|..++.   .++..+. .|+  .+++++++....++.+..+    ..++.. ..   +.+ 
T Consensus         6 ~kI~-iiGa-------G~vG~~~a~---~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~-t~---d~~-   69 (321)
T 3p7m_A            6 KKIT-LVGA-------GNIGGTLAH---LALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG-TN---DYK-   69 (321)
T ss_dssp             CEEE-EECC-------SHHHHHHHH---HHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-ES---CGG-
T ss_pred             CEEE-EECC-------CHHHHHHHH---HHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE-cC---CHH-
Confidence            4566 7786       799999944   4445554 444  3666676666666654310    122221 11   211 


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~  175 (292)
                                .+..-|++|.+||....+. .+   ....+..|.--.    +.+.+.+.+. +.  +.|+++|.....
T Consensus        70 ----------a~~~aDvVIi~ag~p~k~G-~~---R~dl~~~N~~i~----~~i~~~i~~~~p~--a~vivvtNPvd~  127 (321)
T 3p7m_A           70 ----------DLENSDVVIVTAGVPRKPG-MS---RDDLLGINIKVM----QTVGEGIKHNCPN--AFVICITNPLDI  127 (321)
T ss_dssp             ----------GGTTCSEEEECCSCCCCTT-CC---HHHHHHHHHHHH----HHHHHHHHHHCTT--CEEEECCSSHHH
T ss_pred             ----------HHCCCCEEEEcCCcCCCCC-CC---HHHHHHHhHHHH----HHHHHHHHHHCCC--cEEEEecCchHH
Confidence                      1245799999999753322 22   233455554444    4444444433 34  788888776443

>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}

Probab=86.14  E-value=6.9  Score=27.42  Aligned_cols=69  Identities=6%  Similarity=0.104  Sum_probs=49.8

Q ss_pred             ccchhhHHHHHHHHhhcCcEEEE----cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEE
Q psy4251          42 TGLKKKDGNLCFDLVQSSKLFYQ----NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILV  117 (292)
Q Consensus        42 ~GiG~~~a~~~~~l~~~g~~v~~----r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI  117 (292)
                      .-|=+++   +.+...+|..|+.    .+..+-.+-.+++...  +..+..    +.|.++.++-+.++..+++.+|++|
T Consensus        12 peilkei---vreikrqgvrvvllysdqdekrrrerleefekq--gvdvrt----vedkedfrenireiwerypqldvvv   82 (162)
T 2l82_A           12 PEILKEI---VREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ--GVDVRT----VEDKEDFRENIREIWERYPQLDVVV   82 (162)
T ss_dssp             HHHHHHH---HHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT--TCEEEE----CCSHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHH---HHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc--CCceee----eccHHHHHHHHHHHHHhCCCCcEEE
Confidence            6677788   5556677877653    4455666666777655  555554    4588999999999999999999987


Q ss_pred             Ec
Q psy4251         118 LN  119 (292)
Q Consensus       118 ~n  119 (292)
                      .-
T Consensus        83 iv   84 (162)
T 2l82_A           83 IV   84 (162)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=85.78  E-value=3.7  Score=34.93  Aligned_cols=85  Identities=8%  Similarity=-0.053  Sum_probs=49.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHH-------HHhhCCCCceEEEEccCC
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISK-------ILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dls   94 (292)
                      ..+++. |.|.       +.+|..+   +..|...|+.|.+  |+.++.+++.++       +.+......+.++.  +.
T Consensus        30 ~~~~I~-iIG~-------G~mG~~~---a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~--vp   96 (320)
T 4dll_A           30 YARKIT-FLGT-------GSMGLPM---ARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSM--LE   96 (320)
T ss_dssp             CCSEEE-EECC-------TTTHHHH---HHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEEC--CS
T ss_pred             CCCEEE-EECc-------cHHHHHH---HHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEE--CC
Confidence            455777 6677       6899999   5556677777664  888877665431       11111122343333  45


Q ss_pred             ChHHHHHHHH--HHHHhCCCccEEEEccc
Q psy4251          95 RLKSVKKFAE--EYQKKFRSLNILVLNAG  121 (292)
Q Consensus        95 ~~~~v~~~~~--~~~~~~~~id~lI~nAg  121 (292)
                      +...++.++.  .+.....+=.++|++..
T Consensus        97 ~~~~~~~v~~~~~~~~~l~~~~~vi~~st  125 (320)
T 4dll_A           97 NGAVVQDVLFAQGVAAAMKPGSLFLDMAS  125 (320)
T ss_dssp             SHHHHHHHHTTTCHHHHCCTTCEEEECSC
T ss_pred             CHHHHHHHHcchhHHhhCCCCCEEEecCC
Confidence            5667777765  55555545566666654

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=85.70  E-value=0.48  Score=42.93  Aligned_cols=79  Identities=8%  Similarity=-0.012  Sum_probs=41.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc---CcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS---SKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~---g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+++| ++ |.|+       +|||.++++.+.+...-   +++++..+... .++.+.+     +.+  +...+++. +
T Consensus        10 ~~~~~r-Vl-IIGa-------GgVG~~va~lla~~~dv~~~~I~vaD~~~~~-~~~~~~~-----g~~--~~~~~Vda-d   71 (480)
T 2ph5_A           10 ILFKNR-FV-ILGF-------GCVGQALMPLIFEKFDIKPSQVTIIAAEGTK-VDVAQQY-----GVS--FKLQQITP-Q   71 (480)
T ss_dssp             BCCCSC-EE-EECC-------SHHHHHHHHHHHHHBCCCGGGEEEEESSCCS-CCHHHHH-----TCE--EEECCCCT-T
T ss_pred             ecCCCC-EE-EECc-------CHHHHHHHHHHHhCCCCceeEEEEeccchhh-hhHHhhc-----CCc--eeEEeccc-h
Confidence            345555 55 7787       89999998876665432   45555444332 2222222     334  44455533 3


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      .+++.++.+.++  + |+|||.+
T Consensus        72 nv~~~l~aLl~~--~-DvVIN~s   91 (480)
T 2ph5_A           72 NYLEVIGSTLEE--N-DFLIDVS   91 (480)
T ss_dssp             THHHHTGGGCCT--T-CEEEECC
T ss_pred             hHHHHHHHHhcC--C-CEEEECC
Confidence            333344333333  3 9999744

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=84.90  E-value=7.9  Score=33.00  Aligned_cols=115  Identities=9%  Similarity=0.073  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC----cEEEEcCHHHHHHHHHHHHhhCC-CCceEEEEccCCChHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLFYQNCWDKANDAISKILTEKP-SAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~  100 (292)
                      .++. |+|+       +.+|..++.   .+...+    ..++..+.++++..+.++.+..+ ...+.+.. |  +.+   
T Consensus         6 ~KI~-IiGa-------G~vG~~~a~---~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~~~---   68 (318)
T 1ez4_A            6 QKVV-LVGD-------GAVGSSYAF---AMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--EYS---   68 (318)
T ss_dssp             CEEE-EECC-------SHHHHHHHH---HHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--CGG---
T ss_pred             CEEE-EECC-------CHHHHHHHH---HHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--CHH---
Confidence            4577 8887       689999944   444444    33344788888877777765421 11222222 2  211   


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHR  175 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~  175 (292)
                              .+..-|++|..+|....+. .+.+   ..+..|.    -+++.+.+.+.+. +.  +.|+++|.....
T Consensus        69 --------a~~~aDvVii~ag~~~~~g-~~R~---dl~~~n~----~i~~~i~~~i~~~~p~--a~iiv~tNPv~~  126 (318)
T 1ez4_A           69 --------DCKDADLVVITAGAPQKPG-ESRL---DLVNKNL----NILSSIVKPVVDSGFD--GIFLVAANPVDI  126 (318)
T ss_dssp             --------GGTTCSEEEECCCC--------------CHHHHH----HHHHHHHHHHHHTTCC--SEEEECSSSHHH
T ss_pred             --------HhCCCCEEEECCCCCCCCC-CCHH---HHHHHHH----HHHHHHHHHHHHhCCC--eEEEEeCCcHHH
Confidence                    1346899999999853222 1222   2233333    3445555555443 34  888888776544

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=84.68  E-value=0.81  Score=37.89  Aligned_cols=44  Identities=7%  Similarity=0.006  Sum_probs=29.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAI   74 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~   74 (292)
                      +++| +++ |.|+       +|.|++++..+.+++...+.|+.|+.++++++.
T Consensus       106 ~~~~-~vl-iiGa-------Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la  149 (253)
T 3u62_A          106 EVKE-PVV-VVGA-------GGAARAVIYALLQMGVKDIWVVNRTIERAKALD  149 (253)
T ss_dssp             CCCS-SEE-EECC-------SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCC
T ss_pred             CCCC-eEE-EECc-------HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            4577 788 8898       799999965555443334455669988766544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=84.58  E-value=2  Score=34.60  Aligned_cols=69  Identities=12%  Similarity=0.018  Sum_probs=44.9

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++++ |.|+       +.+|..+   +..|...|+ |++  ++.++.+..    . .    .+.++.+|.++.+.++++ 
T Consensus        10 ~~vi-I~G~-------G~~G~~l---a~~L~~~g~-v~vid~~~~~~~~~----~-~----~~~~i~gd~~~~~~l~~a-   67 (234)
T 2aef_A           10 RHVV-ICGW-------SESTLEC---LRELRGSEV-FVLAEDENVRKKVL----R-S----GANFVHGDPTRVSDLEKA-   67 (234)
T ss_dssp             CEEE-EESC-------CHHHHHH---HHHSTTSEE-EEEESCGGGHHHHH----H-T----TCEEEESCTTCHHHHHHT-
T ss_pred             CEEE-EECC-------ChHHHHH---HHHHHhCCe-EEEEECCHHHHHHH----h-c----CCeEEEcCCCCHHHHHhc-
Confidence            4566 7787       6889999   666666676 543  666554432    2 1    367889999988765443 


Q ss_pred             HHHHHhCCCccEEEEccc
Q psy4251         104 EEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg  121 (292)
                           .....|.+|.+.+
T Consensus        68 -----~i~~ad~vi~~~~   80 (234)
T 2aef_A           68 -----NVRGARAVIVDLE   80 (234)
T ss_dssp             -----TCTTCSEEEECCS
T ss_pred             -----CcchhcEEEEcCC
Confidence                 1246788887654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.54  E-value=2  Score=38.90  Aligned_cols=71  Identities=11%  Similarity=0.020  Sum_probs=49.1

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .+++ |.|+       +-+|..+   +..|...|+.|+  .+++++++.+.+++       .+..+.+|-++++-++++ 
T Consensus         4 M~ii-I~G~-------G~vG~~l---a~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~A-   64 (461)
T 4g65_A            4 MKII-ILGA-------GQVGGTL---AENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEA-   64 (461)
T ss_dssp             EEEE-EECC-------SHHHHHH---HHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHH-
T ss_pred             CEEE-EECC-------CHHHHHH---HHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhc-
Confidence            4577 8888       6889999   666777776655  47887776655433       467789999998877665 


Q ss_pred             HHHHHhCCCccEEEEcc
Q psy4251         104 EEYQKKFRSLNILVLNA  120 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nA  120 (292)
                           ....-|++|-.-
T Consensus        65 -----gi~~ad~~ia~t   76 (461)
T 4g65_A           65 -----GAQDADMLVAVT   76 (461)
T ss_dssp             -----TTTTCSEEEECC
T ss_pred             -----CCCcCCEEEEEc
Confidence                 112567777543

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=84.13  E-value=0.093  Score=45.86  Aligned_cols=33  Identities=9%  Similarity=0.142  Sum_probs=25.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEc
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQN   65 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r   65 (292)
                      ++.||++. |.|.       +.+|..+|+.   +.+.|..|++.
T Consensus       172 ~L~GktV~-I~G~-------GnVG~~~A~~---l~~~GakVvvs  204 (355)
T 1c1d_A          172 SLDGLTVL-VQGL-------GAVGGSLASL---AAEAGAQLLVA  204 (355)
T ss_dssp             CSTTCEEE-EECC-------SHHHHHHHHH---HHHTTCEEEEE
T ss_pred             CCCCCEEE-EECc-------CHHHHHHHHH---HHHCCCEEEEE
Confidence            78999999 8887       7999999555   44567677653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=84.07  E-value=12  Score=31.08  Aligned_cols=41  Identities=12%  Similarity=-0.022  Sum_probs=28.8

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKI   77 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l   77 (292)
                      +++. |.|+       +.+|..+   +..++..|+.|+.  ++.++++...+.+
T Consensus         5 ~kV~-VIGa-------G~mG~~i---A~~la~~G~~V~l~d~~~~~~~~~~~~i   47 (283)
T 4e12_A            5 TNVT-VLGT-------GVLGSQI---AFQTAFHGFAVTAYDINTDALDAAKKRF   47 (283)
T ss_dssp             CEEE-EECC-------SHHHHHH---HHHHHHTTCEEEEECSSHHHHHHHHHHH
T ss_pred             CEEE-EECC-------CHHHHHH---HHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence            4566 5577       6799999   5556677777764  7888777776653

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=83.97  E-value=6.8  Score=32.80  Aligned_cols=41  Identities=10%  Similarity=-0.134  Sum_probs=29.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKAND   72 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~   72 (292)
                      .++.|+++. |.|+       ++||+++++.+.   ..|..|+  .|+.++.+.
T Consensus       151 ~~l~g~~v~-IiG~-------G~iG~~~a~~l~---~~G~~V~~~dr~~~~~~~  193 (293)
T 3d4o_A          151 FTIHGANVA-VLGL-------GRVGMSVARKFA---ALGAKVKVGARESDLLAR  193 (293)
T ss_dssp             SCSTTCEEE-EECC-------SHHHHHHHHHHH---HTTCEEEEEESSHHHHHH
T ss_pred             CCCCCCEEE-EEee-------CHHHHHHHHHHH---hCCCEEEEEECCHHHHHH
Confidence            578999999 8897       799999966544   4455554  477765443

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=83.91  E-value=0.46  Score=43.88  Aligned_cols=60  Identities=10%  Similarity=-0.001  Sum_probs=41.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC-------------------HHHHHHHHHHHHh
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC-------------------WDKANDAISKILT   79 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~-------------------~~~~~~~~~~l~~   79 (292)
                      .|.+.+|+ |.|+       +|+|-++   +..|+..|+   +|+..+                   ..|++.+++.+++
T Consensus        29 ~L~~~~Vl-vvG~-------GGlGsei---ak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~   97 (531)
T 1tt5_A           29 ALESAHVC-LINA-------TATGTEI---LKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQE   97 (531)
T ss_dssp             HHHHCEEE-EECC-------SHHHHHH---HHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHT
T ss_pred             HHhcCeEE-EECc-------CHHHHHH---HHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHH
Confidence            35567788 8998       7999999   555555553   333221                   2478888899999


Q ss_pred             hCCCCceEEEEcc
Q psy4251          80 EKPSAQCIAMELD   92 (292)
Q Consensus        80 ~~~~~~~~~~~~D   92 (292)
                      .+|..++..+..+
T Consensus        98 lNp~v~v~~~~~~  110 (531)
T 1tt5_A           98 LNSDVSGSFVEES  110 (531)
T ss_dssp             TCTTSBCCEESSC
T ss_pred             hCCCCeEEEeCCC
Confidence            8887776666543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=83.83  E-value=9.7  Score=32.38  Aligned_cols=115  Identities=10%  Similarity=0.060  Sum_probs=61.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEE--EcCHHHHHHHHHHHHhhCC--CCceEEEEccCCChHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFY--QNCWDKANDAISKILTEKP--SAQCIAMELDLCRLKSV   99 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~--~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v   99 (292)
                      .++. |.|+       +.+|..++.   .++..+.  .|.  ..++++++....++.+..+  +..+.+.. |  +.+. 
T Consensus         7 ~KI~-IIGa-------G~vG~~la~---~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~~~a-   71 (317)
T 3d0o_A            7 NKVV-LIGN-------GAVGSSYAF---SLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--EYSD-   71 (317)
T ss_dssp             CEEE-EECC-------SHHHHHHHH---HHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--CGGG-
T ss_pred             CEEE-EECC-------CHHHHHHHH---HHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--CHHH-
Confidence            4677 7787       689999944   4444452  333  4677777765555554321  12223222 2  2221 


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCcccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHR  175 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~  175 (292)
                                +..-|++|.++|....+. .+   ....+..|.-    +++.+.+.+.+. +.  +.|+++|.....
T Consensus        72 ----------~~~aDvVvi~ag~~~~~g-~~---r~dl~~~n~~----i~~~i~~~i~~~~p~--a~viv~tNPv~~  128 (317)
T 3d0o_A           72 ----------CHDADLVVICAGAAQKPG-ET---RLDLVSKNLK----IFKSIVGEVMASKFD--GIFLVATNPVDI  128 (317)
T ss_dssp             ----------GTTCSEEEECCCCCCCTT-CC---HHHHHHHHHH----HHHHHHHHHHHTTCC--SEEEECSSSHHH
T ss_pred             ----------hCCCCEEEECCCCCCCCC-Cc---HHHHHHHHHH----HHHHHHHHHHHhCCC--cEEEEecCcHHH
Confidence                      246799999999753221 12   2233444433    344444444443 34  788887765443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=83.79  E-value=1.3  Score=36.67  Aligned_cols=47  Identities=11%  Similarity=0.037  Sum_probs=31.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKI   77 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l   77 (292)
                      .+++| ++. |.|+       +++|+++++.+.+... ...++.|+.+++++..+++
T Consensus       113 ~~l~~-~v~-iiG~-------G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l~~~~  159 (263)
T 2d5c_A          113 IPLKG-PAL-VLGA-------GGAGRAVAFALREAGL-EVWVWNRTPQRALALAEEF  159 (263)
T ss_dssp             CCCCS-CEE-EECC-------SHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHH
T ss_pred             CCCCC-eEE-EECC-------cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh
Confidence            36778 888 8898       6899999665444321 2334458888877766654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=83.55  E-value=2.2  Score=34.54  Aligned_cols=33  Identities=9%  Similarity=0.124  Sum_probs=24.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ   64 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~   64 (292)
                      .+++||.++ |.||       +.+|...   +..|...|+.|.+
T Consensus        27 l~L~gk~VL-VVGg-------G~va~~k---a~~Ll~~GA~VtV   59 (223)
T 3dfz_A           27 LDLKGRSVL-VVGG-------GTIATRR---IKGFLQEGAAITV   59 (223)
T ss_dssp             ECCTTCCEE-EECC-------SHHHHHH---HHHHGGGCCCEEE
T ss_pred             EEcCCCEEE-EECC-------CHHHHHH---HHHHHHCCCEEEE
Confidence            578999999 7787       3455555   6667777877665

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=83.36  E-value=4.4  Score=34.59  Aligned_cols=116  Identities=14%  Similarity=0.033  Sum_probs=58.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEE--EcCHHHHHHHHHHHHhhCCC-CceEEEEccCCChHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFY--QNCWDKANDAISKILTEKPS-AQCIAMELDLCRLKSVK  100 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~--~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dls~~~~v~  100 (292)
                      .++. |+|+       +.+|..+   +..++..+.  .|+  ..+.++++....++.+..+- ..+.+. .  ++.    
T Consensus         8 ~KI~-IiGa-------G~vG~~~---a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~~----   69 (318)
T 1y6j_A            8 SKVA-IIGA-------GFVGASA---AFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GDY----   69 (318)
T ss_dssp             CCEE-EECC-------SHHHHHH---HHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CG----
T ss_pred             CEEE-EECC-------CHHHHHH---HHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CCH----
Confidence            3566 7787       6899999   555555553  443  46777776666666543211 122111 1  111    


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                             +.+..-|++|.++|....+. .+   ....+..|.--...+++.+.++   .+.  +.|+++|.....
T Consensus        70 -------~a~~~aDvVii~~g~p~k~g-~~---r~dl~~~n~~i~~~i~~~i~~~---~p~--a~viv~tNPv~~  128 (318)
T 1y6j_A           70 -------SDVKDCDVIVVTAGANRKPG-ET---RLDLAKKNVMIAKEVTQNIMKY---YNH--GVILVVSNPVDI  128 (318)
T ss_dssp             -------GGGTTCSEEEECCCC-------C---HHHHHHHHHHHHHHHHHHHHHH---CCS--CEEEECSSSHHH
T ss_pred             -------HHhCCCCEEEEcCCCCCCCC-cC---HHHHHHhhHHHHHHHHHHHHHh---CCC--cEEEEecCcHHH
Confidence                   12346899999999753221 12   2234555555444444444433   344  788887665433

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=83.20  E-value=9  Score=29.44  Aligned_cols=80  Identities=6%  Similarity=-0.039  Sum_probs=46.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |.+++ -.|++      .  |..+...+..+...+ .|++  .+.+.++.+.+.+....-..++.++..|+.+....   
T Consensus        23 ~~~vL-DlGcG------~--G~~~~~l~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---   89 (197)
T 3eey_A           23 GDTVV-DATCG------N--GNDTAFLASLVGENG-RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY---   89 (197)
T ss_dssp             TCEEE-ESCCT------T--SHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT---
T ss_pred             CCEEE-EcCCC------C--CHHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh---
Confidence            55777 66654      3  333322233332223 4443  66777777777766542224799999997654321   


Q ss_pred             HHHHHHhCCCccEEEEccccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~  123 (292)
                            .-+++|+++.+.++.
T Consensus        90 ------~~~~fD~v~~~~~~~  104 (197)
T 3eey_A           90 ------IDCPVKAVMFNLGYL  104 (197)
T ss_dssp             ------CCSCEEEEEEEESBC
T ss_pred             ------ccCCceEEEEcCCcc
Confidence                  114799999998774

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=83.02  E-value=2.2  Score=37.98  Aligned_cols=38  Identities=18%  Similarity=0.110  Sum_probs=25.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE--EEEcCHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL--FYQNCWDKANDAI   74 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~--v~~r~~~~~~~~~   74 (292)
                      .+++ |.|.       +-+|..+++.   |...|+.  ++.+++++.+.+.
T Consensus         5 ~~vi-IiG~-------Gr~G~~va~~---L~~~g~~vvvId~d~~~v~~~~   44 (413)
T 3l9w_A            5 MRVI-IAGF-------GRFGQITGRL---LLSSGVKMVVLDHDPDHIETLR   44 (413)
T ss_dssp             CSEE-EECC-------SHHHHHHHHH---HHHTTCCEEEEECCHHHHHHHH
T ss_pred             CeEE-EECC-------CHHHHHHHHH---HHHCCCCEEEEECCHHHHHHHH
Confidence            3567 8887       5799999555   4455544  4458887766554

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=82.99  E-value=6.5  Score=33.24  Aligned_cols=114  Identities=16%  Similarity=0.094  Sum_probs=55.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEE--EcCHHHHHHHHHHHHhhCCC-CceEEEEccCCChHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFY--QNCWDKANDAISKILTEKPS-AQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~--~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dls~~~~v~~  101 (292)
                      ++. |.|+       +.+|..+   +..++..|+  .|.  .+++++++....++.+..+- ....+..   ++.+    
T Consensus         2 kI~-VIGa-------G~vG~~l---a~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~~~----   63 (304)
T 2v6b_A            2 KVG-VVGT-------GFVGSTA---AFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH---GGHS----   63 (304)
T ss_dssp             EEE-EECC-------SHHHHHH---HHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE---ECGG----
T ss_pred             EEE-EECC-------CHHHHHH---HHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE---CCHH----
Confidence            455 7787       6899999   455556665  554  37777776655555433210 1111111   1211    


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                             ....-|++|.++|....+. .+.+   ..+..|.--...+.+.+.++   .++  +.|+++|....
T Consensus        64 -------a~~~aDvVIi~~~~~~~~g-~~r~---dl~~~n~~i~~~i~~~i~~~---~p~--~~vi~~tNP~~  120 (304)
T 2v6b_A           64 -------ELADAQVVILTAGANQKPG-ESRL---DLLEKNADIFRELVPQITRA---APD--AVLLVTSNPVD  120 (304)
T ss_dssp             -------GGTTCSEEEECC----------------CHHHHHHHHHHHHHHHHHH---CSS--SEEEECSSSHH
T ss_pred             -------HhCCCCEEEEcCCCCCCCC-CcHH---HHHHhHHHHHHHHHHHHHHh---CCC--eEEEEecCchH
Confidence                   1245799999998753221 1221   23444444444444444443   234  67777665543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=82.96  E-value=0.62  Score=39.01  Aligned_cols=42  Identities=10%  Similarity=0.018  Sum_probs=29.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAI   74 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~   74 (292)
                      +++|++++ |.|+       +|+|+++++.+.   ..|+.|.  .|+.+++++..
T Consensus       126 ~~~~~~v~-iiGa-------G~~g~aia~~L~---~~g~~V~v~~r~~~~~~~l~  169 (275)
T 2hk9_A          126 EVKEKSIL-VLGA-------GGASRAVIYALV---KEGAKVFLWNRTKEKAIKLA  169 (275)
T ss_dssp             TGGGSEEE-EECC-------SHHHHHHHHHHH---HHTCEEEEECSSHHHHHHHT
T ss_pred             CcCCCEEE-EECc-------hHHHHHHHHHHH---HcCCEEEEEECCHHHHHHHH
Confidence            57788998 8897       799999965544   4454444  48877766544

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=82.87  E-value=1  Score=44.93  Aligned_cols=62  Identities=8%  Similarity=-0.002  Sum_probs=42.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC---cEEEEcC-------------------HHHHHHHHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS---KLFYQNC-------------------WDKANDAISKIL   78 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g---~~v~~r~-------------------~~~~~~~~~~l~   78 (292)
                      ..|.+.+|+ |.|+       +|+|-++|+.   |+..|   .+|+..+                   ..|++.+++.++
T Consensus        23 ~rL~~s~Vl-IvG~-------GGlGseiak~---La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~   91 (1015)
T 3cmm_A           23 LKMQTSNVL-ILGL-------KGLGVEIAKN---VVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLA   91 (1015)
T ss_dssp             HHHTTCEEE-EECC-------SHHHHHHHHH---HHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHT
T ss_pred             HHHhcCEEE-EECC-------ChHHHHHHHH---HHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHH
Confidence            346788898 9998       7999999554   44444   3344221                   347888899999


Q ss_pred             hhCCCCceEEEEccC
Q psy4251          79 TEKPSAQCIAMELDL   93 (292)
Q Consensus        79 ~~~~~~~~~~~~~Dl   93 (292)
                      +.+|..++..+..++
T Consensus        92 ~lNP~v~v~~~~~~l  106 (1015)
T 3cmm_A           92 ELNAYVPVNVLDSLD  106 (1015)
T ss_dssp             TSCTTSCEEECCCCC
T ss_pred             HHCCCCeEEEecCCC
Confidence            888877776665444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=82.04  E-value=2.3  Score=37.41  Aligned_cols=85  Identities=15%  Similarity=0.042  Sum_probs=47.2

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCC-------
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLC-------   94 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-------   94 (292)
                      .+.+++++ |.|+       +.+|..+++.+..++. .+.++.++.++++.+.+ +     +.+  ++..|+.       
T Consensus       181 ~v~~~kV~-ViG~-------G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~-l-----Ga~--~~~l~~~~~~~~gy  243 (381)
T 3p2y_A          181 TVKPASAL-VLGV-------GVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRS-V-----GAQ--WLDLGIDAAGEGGY  243 (381)
T ss_dssp             EECCCEEE-EESC-------SHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHH-T-----TCE--ECCCC---------
T ss_pred             CcCCCEEE-EECc-------hHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-c-----CCe--EEeccccccccccc
Confidence            35788898 8998       7999999777665533 23334477766655433 2     222  2222210       


Q ss_pred             ----ChHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          95 ----RLKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        95 ----~~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                          ..+....-.+.+.+.....|++|.++.+.
T Consensus       244 a~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iP  276 (381)
T 3p2y_A          244 ARELSEAERAQQQQALEDAITKFDIVITTALVP  276 (381)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCSEEEECCCCT
T ss_pred             hhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCC
Confidence                01112222333334445789999987654

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=81.62  E-value=1.2  Score=38.61  Aligned_cols=76  Identities=11%  Similarity=0.092  Sum_probs=40.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      .|++++ |.|++      +++|...+..+..+.  +..|+. .+.++.+.+    + .  +....   .| .+.+ ..+.
T Consensus       142 ~g~~Vl-V~Ga~------G~vG~~a~qla~~~g--~~~V~~~~~~~~~~~~----~-~--ga~~~---~~-~~~~-~~~~  200 (349)
T 4a27_A          142 EGMSVL-VHSAG------GGVGQAVAQLCSTVP--NVTVFGTASTFKHEAI----K-D--SVTHL---FD-RNAD-YVQE  200 (349)
T ss_dssp             TTCEEE-ESSTT------SHHHHHHHHHHTTST--TCEEEEEECGGGHHHH----G-G--GSSEE---EE-TTSC-HHHH
T ss_pred             CCCEEE-EEcCC------cHHHHHHHHHHHHcC--CcEEEEeCCHHHHHHH----H-c--CCcEE---Ec-CCcc-HHHH
Confidence            478888 99999      999999855433221  455554 343333222    1 1  22222   23 2322 2222


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.++.  .+.+|+++.+.|.
T Consensus       201 ~~~~~--~~g~Dvv~d~~g~  218 (349)
T 4a27_A          201 VKRIS--AEGVDIVLDCLCG  218 (349)
T ss_dssp             HHHHC--TTCEEEEEEECC-
T ss_pred             HHHhc--CCCceEEEECCCc
Confidence            23321  2479999999884

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=81.45  E-value=6.9  Score=32.22  Aligned_cols=77  Identities=14%  Similarity=0.072  Sum_probs=50.4

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |.+++ =.|++        .|..+...+..+...|+.|++  .+++-++.+.+++.+.....++.+++.|+.+..     
T Consensus        71 ~~~vL-DlGcG--------tG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~-----  136 (261)
T 4gek_A           71 GTQVY-DLGCS--------LGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-----  136 (261)
T ss_dssp             TCEEE-EETCT--------TTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC-----
T ss_pred             CCEEE-EEeCC--------CCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc-----
Confidence            55677 66643        354442333444456777775  567778888887776654568999999997642     


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                             +++.|+++.+...
T Consensus       137 -------~~~~d~v~~~~~l  149 (261)
T 4gek_A          137 -------IENASMVVLNFTL  149 (261)
T ss_dssp             -------CCSEEEEEEESCG
T ss_pred             -------ccccccceeeeee
Confidence                   3568998877543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=81.44  E-value=4.8  Score=34.00  Aligned_cols=117  Identities=11%  Similarity=0.056  Sum_probs=65.2

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEEEcCHHHHHHHHHHHHhhCC--CCceEEEEccCCChHHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFYQNCWDKANDAISKILTEKP--SAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +. |.|+       +++|..+|..+......+ ..++..++++++..+.+|....+  .........+  |.+.      
T Consensus         3 V~-IiGa-------G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d~~~------   66 (294)
T 2x0j_A            3 LG-FVGA-------GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DYSL------   66 (294)
T ss_dssp             EE-EECC-------SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--CGGG------
T ss_pred             EE-EECc-------CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--CHHH------
Confidence            45 6686       799999965543332222 33445777777777777765321  1122222221  2221      


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                           ...-|++|..||....+. ++.   ...++.|.-    +.+.+.+.+.+..+ .+.|+.+|...-
T Consensus        67 -----~~~aDvVvitAG~prkpG-mtR---~dLl~~Na~----I~~~i~~~i~~~~p-~aivlvvsNPvd  122 (294)
T 2x0j_A           67 -----LKGSEIIVVTAGLARKPG-MTR---LDLAHKNAG----IIKDIAKKIVENAP-ESKILVVTNPMD  122 (294)
T ss_dssp             -----GTTCSEEEECCCCCCCSS-SCH---HHHHHHHHH----HHHHHHHHHHTTST-TCEEEECSSSHH
T ss_pred             -----hCCCCEEEEecCCCCCCC-Cch---HHHHHHHHH----HHHHHHHHHHhcCC-ceEEEEecCcch
Confidence                 235799999999864332 233   344555544    45555555555442 277777777643

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=80.75  E-value=2.6  Score=33.28  Aligned_cols=41  Identities=15%  Similarity=0.054  Sum_probs=29.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKI   77 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l   77 (292)
                      ++. |+||+      +.+|..+   +..|...|+.|.  .|+.++.++..+++
T Consensus         2 ~i~-iiGa~------G~~G~~i---a~~l~~~g~~V~~~~r~~~~~~~~~~~~   44 (212)
T 1jay_A            2 RVA-LLGGT------GNLGKGL---ALRLATLGHEIVVGSRREEKAEAKAAEY   44 (212)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred             eEE-EEcCC------CHHHHHH---HHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            355 78977      8999999   555666776665  48888777665543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=80.70  E-value=25  Score=29.73  Aligned_cols=117  Identities=10%  Similarity=-0.011  Sum_probs=62.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEEEcCHHHHHHHHHHHHhhCCCC--ceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFYQNCWDKANDAISKILTEKPSA--QCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~~r~~~~~~~~~~~l~~~~~~~--~~~~~~~Dls~~~~v~~~  102 (292)
                      +++. |.|+       +.+|..++..+......+ ..++.++.++++....++.+..+..  .+.+.. |  +.      
T Consensus         7 ~kI~-IIGa-------G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~~------   69 (316)
T 1ldn_A            7 ARVV-VIGA-------GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--DY------   69 (316)
T ss_dssp             CEEE-EECC-------SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--CG------
T ss_pred             CEEE-EECc-------CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--cH------
Confidence            4677 8888       689999955433221111 2333477777766666666543211  233332 2  21      


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESH  174 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~  174 (292)
                           +.+..-|++|.++|+...+.+ +..   ..+..|.    -+.+.+.+.+.+. +.  +.++++|....
T Consensus        70 -----~al~~aDvViia~~~~~~~g~-~r~---dl~~~n~----~i~~~i~~~i~~~~p~--a~~iv~tNPv~  127 (316)
T 1ldn_A           70 -----DDCRDADLVVICAGANQKPGE-TRL---DLVDKNI----AIFRSIVESVMASGFQ--GLFLVATNPVD  127 (316)
T ss_dssp             -----GGTTTCSEEEECCSCCCCTTT-CSG---GGHHHHH----HHHHHHHHHHHHHTCC--SEEEECSSSHH
T ss_pred             -----HHhCCCCEEEEcCCCCCCCCC-CHH---HHHHcCh----HHHHHHHHHHHHHCCC--CEEEEeCCchH
Confidence                 123467999999998643322 222   2344442    3444444544443 34  67777766543

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=80.50  E-value=21  Score=30.09  Aligned_cols=51  Identities=8%  Similarity=0.049  Sum_probs=33.8

Q ss_pred             cEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccc
Q psy4251          60 KLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus        60 ~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg  121 (292)
                      ..|++  .+...++.+.+.+.+.. -.++.++..|..+...          ..+++|.|+.++-
T Consensus       144 ~~v~avD~s~~~l~~a~~~~~~~g-~~~v~~~~~D~~~~~~----------~~~~fD~Il~d~P  196 (315)
T 1ixk_A          144 GVIYAFDVDENRLRETRLNLSRLG-VLNVILFHSSSLHIGE----------LNVEFDKILLDAP  196 (315)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHHHT-CCSEEEESSCGGGGGG----------GCCCEEEEEEECC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHhC-CCeEEEEECChhhccc----------ccccCCEEEEeCC
Confidence            34443  67888888877776652 1268888888876432          1247999998653

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=80.14  E-value=1.1  Score=44.63  Aligned_cols=62  Identities=10%  Similarity=-0.045  Sum_probs=44.1

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--------EEEEcC-------------------HHHHHHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--------LFYQNC-------------------WDKANDAIS   75 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--------~v~~r~-------------------~~~~~~~~~   75 (292)
                      |++.+++ |.|+       +|+|-++++.   |+..|+        +|+..+                   ..|++.+++
T Consensus       423 L~~~~Vl-vVGa-------GGlGsevlk~---La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~  491 (1015)
T 3cmm_A          423 IANSKVF-LVGS-------GAIGCEMLKN---WALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAE  491 (1015)
T ss_dssp             HHTCEEE-EECC-------SHHHHHHHHH---HHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHH
T ss_pred             HhcCeEE-EEec-------CHHHHHHHHH---HHHcCcCcCCCCeEEEEeCCEeccccccccccCChhhCCCHHHHHHHH
Confidence            5567888 8999       7999999554   444444        333221                   357888888


Q ss_pred             HHHhhCCCC--ceEEEEccCCC
Q psy4251          76 KILTEKPSA--QCIAMELDLCR   95 (292)
Q Consensus        76 ~l~~~~~~~--~~~~~~~Dls~   95 (292)
                      .+++.+|..  ++..+..+++.
T Consensus       492 ~l~~iNP~v~~~v~~~~~~i~~  513 (1015)
T 3cmm_A          492 AVCAMNPDLKGKINAKIDKVGP  513 (1015)
T ss_dssp             HHHHHCGGGTTTEEEECCCCSG
T ss_pred             HHHHHCCCCcceEEEEecccCc
Confidence            888888877  88888887774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	2e-12
d1wmaa1	275	c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox	3e-11
d2ew8a1	247	c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas	9e-10
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	2e-09
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	2e-09
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	5e-09
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	6e-09
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	2e-08
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	1e-07
d1gz6a_	302	c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do	4e-07
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	4e-07
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	4e-07
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	1e-05
d1zmta1	252	c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag	1e-05
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	3e-05
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	3e-05
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	6e-05
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	1e-04
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	2e-04
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	2e-04
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	4e-04
d1ja9a_	259	c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc	7e-04
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	8e-04
d1mxha_	266	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	0.002
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.003

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 2/106 (1%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
               +  ++  +       I    DL   + +       + +   ++I + NAG+     
Sbjct: 45  GNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDT 104

Query: 127 -FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
             S +  G++  F VN LA    T +   ++ +       ++ ++S
Sbjct: 105 LLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS 150

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 3e-11
 Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
            +   A+ ++  E  S      +LD+  L+S++   +  +K++  L++LV NAG+     
Sbjct: 39  TRGQAAVQQLQAEGLSP--RFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVA 96

Query: 128 SH--TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS 185
                    E T + N      +       L+   K   RVV VSS     +  +     
Sbjct: 97  DPTPFHIQAEVTMKTNFFGTRDVC----TELLPLIKPQGRVVNVSSIMSVRALKSCSPEL 152

Query: 186 KSVLSVENYSDF----------------------WAMTAYNDTKLCNVLFGEKLATLWYK 223
           +     E  ++                       W  +AY  TK+   +     A     
Sbjct: 153 QQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHA----- 207

Query: 224 YKIALSSRHCCWKITV 239
               LS +    KI +
Sbjct: 208 --RKLSEQRKGDKILL 221

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

 Score = 55.7 bits (134), Expect = 9e-10
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 66  CWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL 125
             D      ++        + + ++ D+ +   V+ F ++    F   +ILV NAG++ L
Sbjct: 34  IADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPL 93

Query: 126 G--FSHTEDGFETTFQVNHLAHFYLT 149
                 T + ++ TF++N  + F + 
Sbjct: 94  IPFDELTFEQWKKTFEINVDSGFLMA 119

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 26/166 (15%), Positives = 48/166 (28%), Gaps = 28/166 (16%)

Query: 68  DKANDAISKILTEKPSAQ-CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--- 123
           ++  +   +IL    S Q   ++  D+       +       KF  L+ILV NAG     
Sbjct: 40  ERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPD 99

Query: 124 ---GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT 180
                G + + + ++ T  +N  +   LT +                        +   T
Sbjct: 100 SQSKTGTAQSIESYDATLNLNLRSVIALTKKA---------------------VPHLSST 138

Query: 181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI 226
           K  I                  Y+  K     +    A    ++ I
Sbjct: 139 KGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHGI 184

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 25/161 (15%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA--GVFGL 125
               +  +K   +   A+     +D    + +   A++ + +   ++ILV NA       
Sbjct: 42  HGLEETAAKC--KGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSD 99

Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS 185
            F+  +   E TF+VN LAHF+ T     A+ K       +V V+S +   S        
Sbjct: 100 LFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNH--GHIVTVASAAGHVS-------- 149

Query: 186 KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI 226
                         + AY  +K   V F + L       +I
Sbjct: 150 -----------VPFLLAYCSSKFAAVGFHKTLTDELAALQI 179

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 23/143 (16%)

Query: 86  CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHL 143
               ++DL   +   +F EE       +++LV NA +   G   +     +    +VN  
Sbjct: 50  GAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLT 109

Query: 144 AHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAY 203
           A  +L+                +            I        V SV+         AY
Sbjct: 110 APMHLS---------------ALAAREMRKVGGGAIVN------VASVQGLFAEQENAAY 148

Query: 204 NDTKLCNVLFGEKLATLWYKYKI 226
           N +K   V     LA      +I
Sbjct: 149 NASKGGLVNLTRSLALDLAPLRI 171

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 6e-09
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
           +      + +  +    + + ++ D+   + ++    +    F  L+ILV NAGV     
Sbjct: 38  EAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGV----- 92

Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIK-GAKLFARVVVVSSESHRYSYITKDTISK 186
            + E  +E T Q+N ++    T    + + K        ++ +SS +       +     
Sbjct: 93  -NNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCA 151

Query: 187 SVLSVENYSDFWAM 200
           S   +  ++   A+
Sbjct: 152 SKHGIVGFTRSAAL 165

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 71  NDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FS 128
           N+A  + L  +   + + +  D+             Q++  +LN+LV NAG+   G   +
Sbjct: 39  NEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMET 98

Query: 129 HTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSV 188
              + F    ++N  + F    Q    +    +    ++ ++S S           S S 
Sbjct: 99  GRLEDFSRLLKINTESVFIGCQQ---GIAAMKETGGSIINMASVSSWLPIEQYAGYSASK 155

Query: 189 LSVENYSDFWAM 200
            +V   +   A+
Sbjct: 156 AAVSALTRAAAL 167

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 68  DKANDAISKILTEKPSA-QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
           ++  +    IL    S  Q  ++  D+       +      K+F  +++LV NAG     
Sbjct: 40  ERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPD 99

Query: 127 ------FSHTEDGFETTFQVNHLAHFYLT 149
                      D +  T ++N  A   +T
Sbjct: 100 AFGTTGTDQGIDIYHKTLKLNLQAVIEMT 128

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 21/151 (13%), Positives = 52/151 (34%), Gaps = 23/151 (15%)

Query: 78  LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFE 135
           + E+   +      +   +++ +K  +     F  ++++V NAG+         +++ ++
Sbjct: 56  VVEEIRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWD 115

Query: 136 TTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYS 195
              +V+    F +T    + + K      R+++ +S S  Y                   
Sbjct: 116 IIQRVHLRGSFQVTRAAWDHMKKQNY--GRIIMTASASGIYGN----------------- 156

Query: 196 DFWAMTAYNDTKLCNVLFGEKLATLWYKYKI 226
             +    Y+  KL  +     L     K  I
Sbjct: 157 --FGQANYSAAKLGLLGLANTLVIEGRKNNI 185

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFR-SLNILVLNAGVFGLG 126
            + N+ +SK   +K   Q      D       +K  +     F   L+IL+ N G     
Sbjct: 43  YELNECLSKW--QKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSK 100

Query: 127 --FSHTEDGFETTFQVNHLAHFYLT 149
               +T + F      N  + ++L+
Sbjct: 101 PTLDYTAEDFSFHISTNLESAYHLS 125

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 26/164 (15%)

Query: 68  DKANDAISKILTEKPSA-QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
           D+  +   +IL     A +  A+  D+               KF  ++ILV NAG     
Sbjct: 39  DRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLAD 98

Query: 127 ----FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD 182
                    + ++ TF++N  A   +T +                        +   TK 
Sbjct: 99  GTANTDQPVELYQKTFKLNFQAVIEMTQKT---------------------KEHLIKTKG 137

Query: 183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI 226
            I      V           Y   K     +    A    ++ +
Sbjct: 138 EIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGV 181

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
           ++A++A  K+ TEK   + +A   D+   + VKK  E  ++KF  L+ +V  AG+     
Sbjct: 40  EEASEAAQKL-TEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHP 98

Query: 127 -FSHTEDGFETTFQVNHLAHFYL 148
                 D F    +VN    +Y+
Sbjct: 99  AEEFPLDEFRQVIEVNLFGTYYV 121

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 3/83 (3%)

Query: 70  ANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLG 126
            +D   K   E  +      +L     +   +  E     +  +++LV N      F   
Sbjct: 29  CHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPI 88

Query: 127 FSHTEDGFETTFQVNHLAHFYLT 149
             +  + +    +   +  F L 
Sbjct: 89  DKYAVEDYRGAVEALQIRPFALV 111

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
             A D +   L     A+ I ++ ++   + V    +     F  +N LV N G   L  
Sbjct: 50  KSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSP 109

Query: 128 SH--TEDGFETTFQVNHLAHFYLT 149
           +   +  G+    + N    FY+ 
Sbjct: 110 AEHISSKGWHAVLETNLTGTFYMC 133

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 3/113 (2%)

Query: 66  CWDKANDAISKILTE-KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG 124
              + +D   K         Q    + D        K  +  +K F  ++ LV NAG+  
Sbjct: 35  ITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAV 94

Query: 125 LGFSH--TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR 175
                  T   +     VN    F+ T      +       + + + S E   
Sbjct: 95  NKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV 147

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 24/163 (14%)

Query: 66  CWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL 125
             D  ++  +    E          LD+   +  ++     +++F S++ LV NAG+   
Sbjct: 34  LADVLDEEGAATAREL-GDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTG 92

Query: 126 GFSH--TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT 183
            F    + + F    ++N    F     +  A+         +V +SS +          
Sbjct: 93  MFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGG--GSIVNISSAAGLM------- 143

Query: 184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI 226
                            ++Y  +K       +  A      +I
Sbjct: 144 ------------GLALTSSYGASKWGVRGLSKLAAVELGTDRI 174

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 66  CWDKANDAISKILTEKPSAQCIA-MELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG 124
             D A+D   K+     S   I+ +  D+ + + V+   +    K   L+I+  N GV  
Sbjct: 35  IADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLS 94

Query: 125 LG----FSHTEDGFETTFQVNHLAHFY 147
                      + F+    +N    F 
Sbjct: 95  TTPYSILEAGNEDFKRVMDINVYGAFL 121

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG---VFG 124
           +    + + +L   P A+ +    D+     V+ +     ++F  ++    NAG      
Sbjct: 39  EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQN 98

Query: 125 LGFSHTEDGFETTFQVNHLAHFY 147
              S T   F+    +N    F 
Sbjct: 99  PTESFTAAEFDKVVSINLRGVFL 121

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
           D AN  + +I  ++   Q  A   D+   + +   A+    K   ++ILV NAG  G   
Sbjct: 46  DAANHVVDEI--QQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKP 103

Query: 127 FSHTEDGFETTFQVNHLAHFY 147
           F      F   +++N  + F+
Sbjct: 104 FDMPMADFRRAYELNVFSFFH 124

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 4/132 (3%)

Query: 71  NDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH- 129
            D   K +  + +     + LD+ +    K   +     F  L++LV NAG+  +G    
Sbjct: 39  LDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIED 98

Query: 130 -TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSV 188
                ++    VN    F                   ++ +SS       +     + + 
Sbjct: 99  YALTEWQRILDVNLTGVFLGIRA--VVKPMKEAGRGSIINISSIEGLAGTVACHGYTATK 156

Query: 189 LSVENYSDFWAM 200
            +V   +   A+
Sbjct: 157 FAVRGLTKSTAL 168

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
            KA + +   L +K  AQ +A++ D+ +   V    ++    F  L+ ++ N+G+     
Sbjct: 41  SKAAEEVVAEL-KKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCD 99

Query: 127 -FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG 159
               T++ F+  F +N    F++  Q      +G
Sbjct: 100 ELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG 133

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (87), Expect = 8e-04
 Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 28/161 (17%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
            + N  +  +  E P  + +   +DL    + +K           +++LV NA +  +  
Sbjct: 36  TRTNSDLVSLAKECPGIEPVC--VDLGDWDATEKALGG----IGPVDLLVNNAALVIMQP 89

Query: 127 -FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS 185
               T++ F+ +F VN  + F ++           ++ AR ++          I      
Sbjct: 90  FLEVTKEAFDRSFSVNLRSVFQVS-----------QMVARDMI---NRGVPGSIV----- 130

Query: 186 KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI 226
            +V S+  +  F  +  Y+ TK    +  + +A     +KI
Sbjct: 131 -NVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKI 170

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 21/163 (12%), Positives = 42/163 (25%), Gaps = 7/163 (4%)

Query: 68  DKANDAISKILTEKPSAQCIAMELDLC----RLKSVKKFAEEYQKKFRSLNILVLNAGVF 123
           + A   +   L    +   +  + DL      L   +   +   + F   ++LV NA  +
Sbjct: 36  EGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAY 95

Query: 124 GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT 183
                   D          +      L   NA+   A LF        +    ++ +++ 
Sbjct: 96  YPTPLLPGDDTNGAADAKPIDAQVAELFGSNAV---APLFLIRAFARRQGEGGAWRSRNL 152

Query: 184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI 226
              ++              Y   K          A       I
Sbjct: 153 SVVNLCDAMTDLPLPGFCVYTMAKHALGGLTRAAALELAPRHI 195

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 24/143 (16%)

Query: 86  CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHL 143
              + +D+    SV++   E       L+ +V  AG+    F      + +E   +VN  
Sbjct: 51  AHPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLT 110

Query: 144 AHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAY 203
             F +      A+                  +       T S+  L             Y
Sbjct: 111 GSFLVAKAASEAMR----------------EKNPGSIVLTASRVYLG------NLGQANY 148

Query: 204 NDTKLCNVLFGEKLATLWYKYKI 226
             +    V     LA    ++ I
Sbjct: 149 AASMAGVVGLTRTLALELGRWGI 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	100.0
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	100.0
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	100.0
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	100.0
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	100.0
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	100.0
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	100.0
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	100.0
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	100.0
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	100.0
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	100.0
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	100.0
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	100.0
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	100.0
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	100.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	100.0
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	100.0
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	100.0
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	100.0
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	100.0
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	100.0
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	100.0
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	100.0
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	100.0
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	100.0
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	100.0
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	100.0
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	100.0
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	100.0
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	100.0
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	100.0
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	100.0
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	100.0
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	100.0
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	100.0
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	100.0
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	100.0
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	100.0
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	100.0
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	100.0
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	100.0
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	100.0
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	100.0
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	100.0
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	100.0
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	100.0
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	100.0
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	100.0
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	100.0
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	100.0
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	100.0
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	100.0
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	100.0
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	100.0
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.97
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.97
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.97
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.96
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.96
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.96
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.96
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.95
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.95
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.94
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.94
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.89
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.67
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.65
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.51
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.48
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.45
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.45
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.44
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.42
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.41
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.37
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.35
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.32
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.3
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.28
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.26
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.24
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.23
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.22
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.21
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.21
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.16
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.14
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	98.87
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.81
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	98.76
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	98.71
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	98.45
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	98.27
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	98.22
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.09
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	97.84
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	97.79
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.41
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.33
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.6
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.58
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.5
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.17
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.16
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.11
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.05
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.01
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.94
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.67
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.47
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.46
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.94
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.89
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.88
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.79
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	94.73
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.66
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.62
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.47
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.41
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	94.33
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.16
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.14
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.03
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.9
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.87
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.83
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.82
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	93.73
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.63
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.57
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.24
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.21
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.67
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.35
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.02
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.86
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.62
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.14
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.04
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.81
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	90.74
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	90.71
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.46
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.88
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.71
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	89.49
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	89.42
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.27
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.06
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.66
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	88.6
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	88.41
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	88.02
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	87.99
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	87.91
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	87.88
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	87.51
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	87.37
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	87.31
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	87.14
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	86.93
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	86.86
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	86.39
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	85.93
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	85.35
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	84.4
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	83.84
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	83.27
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	82.86
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	82.76
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	81.98
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	81.91
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	81.32
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	80.94
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	80.75
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	80.55

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=7e-42  Score=289.06  Aligned_cols=233  Identities=15%  Similarity=0.146  Sum_probs=194.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|+||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++++.  +.++..+++|++|+++
T Consensus         6 f~lenKval-ITGas------~GIG~a~---a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvt~~~~   73 (251)
T d2c07a1           6 YCGENKVAL-VTGAG------RGIGREI---AKMLAKSVSHVICISRTQKSCDSVVDEIKSF--GYESSGYAGDVSKKEE   73 (251)
T ss_dssp             CCCSSCEEE-EESTT------SHHHHHH---HHHHTTTSSEEEEEESSHHHHHHHHHHHHTT--TCCEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence            568899999 99999      9999999   777888998876  49999999999999876  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+++++||+||||||...  +..+.+.++|++.+++|+.++++++++++|.|++++.  |+||++||..+..
T Consensus        74 v~~~~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--G~IVnisS~~~~~  151 (251)
T d2c07a1          74 ISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY--GRIINISSIVGLT  151 (251)
T ss_dssp             HHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC--EEEEEECCTHHHH
T ss_pred             HHHHHHHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCC--eEEEEECCHHhcC
Confidence            99999999999999999999999874  5677888999999999999999999999999998888  9999999998887


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       ...+|++||+|+.+|++++|.|+.++|||||+|+||+|+ ++.+..... ....+...
T Consensus       152 ~~------------~-------~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~-~~~~~~~~  211 (251)
T d2c07a1         152 GN------------V-------GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQ-IKKNIISN  211 (251)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHH-HHHHHHTT
T ss_pred             CC------------C-------CCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHH-HHHHHHhc
Confidence            65            3       678999999999999999999999999999999999999 988765431 11122221


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      .  ....+.+|+|.|.      ++....++|+.+ .|.-|+
T Consensus       212 ~--pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~s  250 (251)
T d2c07a1         212 I--PAGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGLS  250 (251)
T ss_dssp             C--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred             C--CCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCCcC
Confidence            1  2223568999987      677788899865 455554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.6e-42  Score=289.77  Aligned_cols=228  Identities=18%  Similarity=0.155  Sum_probs=194.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|+||+++ ||||+      +|||+++   +..|++.|+.|+.  |+.++++++.+++++.  +.++.+++||++++++
T Consensus         7 m~L~gK~al-ITGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~--g~~~~~~~~Dvs~~~~   74 (255)
T d1fmca_           7 LRLDGKCAI-ITGAG------AGIGKEI---AITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQE   74 (255)
T ss_dssp             GCCTTCEEE-ETTTT------SHHHHHH---HHHHHTTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHc--CCcEEEEEccCCCHHH
Confidence            468999999 99999      9999999   6778888888774  9999999999999887  5689999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC-CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG-LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~-~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      ++++++++.+++++||+||||||+.. .+.+.+.++|++.+++|+.+++++++.++|+|.+++.  ++||++||.++..+
T Consensus        75 ~~~~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--g~Ii~isS~~~~~~  152 (255)
T d1fmca_          75 LSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG--GVILTITSMAAENK  152 (255)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTCC
T ss_pred             HHHHHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccc--cccccccccchhcc
Confidence            99999999999999999999999874 3457899999999999999999999999999999887  99999999988776


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +..+|++||+++.+|++++|.|+.++|||||+|+||+|+ ++.+..........+....
T Consensus       153 ~------------~-------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~  213 (255)
T d1fmca_         153 N------------I-------NMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHT  213 (255)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTC
T ss_pred             c------------c-------ccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcC
Confidence            5            3       678999999999999999999999999999999999999 8876543221111222222


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ....+.+|+|.|.      ++.....+|+.+
T Consensus       214 --pl~R~g~pedvA~~v~fL~S~~s~~itG~~i  244 (255)
T d1fmca_         214 --PIRRLGQPQDIANAALFLCSPAASWVSGQIL  244 (255)
T ss_dssp             --SSCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             --CCCCCcCHHHHHHHHHHHhCchhcCCcCCEE
Confidence              2223568999987      677788899865

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=100.00  E-value=7.6e-42  Score=289.85  Aligned_cols=237  Identities=14%  Similarity=0.125  Sum_probs=199.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .|+||+++ ||||+      +|||+++   +..|+++|+.|+  .|+.++++++.+++.+..++.++..++||++|++++
T Consensus         1 rl~gK~al-ITGas------~GIG~ai---a~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v   70 (258)
T d1iy8a_           1 RFTDRVVL-ITGGG------SGLGRAT---AVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQV   70 (258)
T ss_dssp             CCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHH
Confidence            47899999 99999      9999999   777888888876  499999999999998887788999999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++.+++++||+||||||+..   ++.+.+.++|++.+++|+.++++++++++|.|+++..  |+||++||..+..
T Consensus        71 ~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~--G~Ii~isS~~~~~  148 (258)
T d1iy8a_          71 EAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGS--GMVVNTASVGGIR  148 (258)
T ss_dssp             HHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCGGGTS
T ss_pred             HHHHHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcC--CCCcccccHhhcc
Confidence            9999999999999999999999763   4567899999999999999999999999999998887  9999999998877


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc---CCccch
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF---GTPVRT  252 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~---~~~~~~  252 (292)
                      +.            +       ....|++||+++.+|++++|.|+.++|||||+|+||+|+ +|.+.....   ..+...
T Consensus       149 ~~------------~-------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~  209 (258)
T d1iy8a_         149 GI------------G-------NQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKA  209 (258)
T ss_dssp             BC------------S-------SBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHH
T ss_pred             CC------------C-------CchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHH
Confidence            65            3       688999999999999999999999999999999999999 887654211   111222


Q ss_pred             hhhhhcccc--ccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         253 FSWISRVRP--VTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       253 ~~~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      ...+....|  .+.+|+|.|.      ++....++|+.+ .|.-|+
T Consensus       210 ~~~~~~~~pl~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~s  255 (258)
T d1iy8a_         210 AEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQS  255 (258)
T ss_dssp             HHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred             HHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcchh
Confidence            222211222  3568999887      677788899854 455554

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.1e-42  Score=287.96  Aligned_cols=228  Identities=15%  Similarity=0.148  Sum_probs=191.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      ||+||+++ ||||+      +|||+++   +..|+++|+.|+  .|++++++++.+++.     .+...+++|+++++++
T Consensus         1 dl~gK~al-ITGas------~GIG~a~---a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v   65 (243)
T d1q7ba_           1 NFEGKIAL-VTGAS------RGIGRAI---AETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASI   65 (243)
T ss_dssp             CCTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHh
Confidence            68999999 99999      9999999   666778888776  499999999888873     4678899999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.+++++||+||||||...  +..+.+.++|++.+++|+.++++++++++|+|++++.  |+||++||..+..+
T Consensus        66 ~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--G~II~isS~~~~~~  143 (243)
T d1q7ba_          66 ESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRH--GRIITIGSVVGTMG  143 (243)
T ss_dssp             HHHHHHHHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCHHHHHC
T ss_pred             hhhhhhhhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCC--CEeeeecchhhcCC
Confidence            9999999999999999999999874  5678899999999999999999999999999998887  99999999988876


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       ...+|++||+|+.+|++++|.|+.++|||||+|+||+|+ ++.+..... ....+....
T Consensus       144 ~------------~-------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~-~~~~~~~~~  203 (243)
T d1q7ba_         144 N------------G-------GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDD-QRAGILAQV  203 (243)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHH-HHHHHHTTC
T ss_pred             C------------C-------CCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhhhh-HHHHHHhcC
Confidence            5            3       678999999999999999999999999999999999999 887765432 111111111


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc-cCCcc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMW  288 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w  288 (292)
                        ....+.+|+|.|.      ++.....+|+.+ .|.-|
T Consensus       204 --pl~R~~~pedvA~~v~fL~S~~s~~itGq~i~vdGG~  240 (243)
T d1q7ba_         204 --PAGRLGGAQEIANAVAFLASDEAAYITGETLHVNGGM  240 (243)
T ss_dssp             --TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred             --CCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCe
Confidence              2223568999987      667778889865 34433

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-41  Score=289.01  Aligned_cols=228  Identities=14%  Similarity=0.074  Sum_probs=174.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|+||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++.+.  +.++..+.||++++++
T Consensus         4 F~LkgK~al-VTGas------~GIG~ai---A~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~~   71 (259)
T d1xq1a_           4 WSLKAKTVL-VTGGT------KGIGHAI---VEEFAGFGAVIHTCARNEYELNECLSKWQKK--GFQVTGSVCDASLRPE   71 (259)
T ss_dssp             TCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHH
T ss_pred             cCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCceEEEeccCCCHHH
Confidence            578999999 99999      9999999   666778888876  49999999999999876  5689999999999999


Q ss_pred             HHHHHHHHHHhC-CCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKF-RSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~-~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+++ ++||+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|+++..  |+||++||..+.
T Consensus        72 v~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~--G~Iv~isS~~~~  149 (259)
T d1xq1a_          72 REKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGC--GNIIFMSSIAGV  149 (259)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CEEEEEC-----
T ss_pred             HHHHHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccc--cccccccccccc
Confidence            999999999987 68999999999873  5678899999999999999999999999999998877  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       ....|++||+++..|++++|.|+.++|||||+|+||+|+ ++.+..........+..
T Consensus       150 ~~~------------~-------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~  210 (259)
T d1xq1a_         150 VSA------------S-------VGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVIS  210 (259)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------
T ss_pred             ccc------------c-------ccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHHHHHHHHh
Confidence            765            2       677899999999999999999999999999999999999 98877544322222222


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ..  ....+.+|+|.|.      ++....++|+.+
T Consensus       211 ~~--pl~R~~~pedvA~~v~fL~S~~s~~iTG~~i  243 (259)
T d1xq1a_         211 RK--PLGRFGEPEEVSSLVAFLCMPAASYITGQTI  243 (259)
T ss_dssp             ---------CCGGGGHHHHHHHTSGGGTTCCSCEE
T ss_pred             CC--CCCCCcCHHHHHHHHHHHhCchhcCCcCcEE
Confidence            22  2223568998887      566677778755

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.4e-41  Score=287.11  Aligned_cols=234  Identities=20%  Similarity=0.271  Sum_probs=194.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +|+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++++++.+++.+.. +.++.++++|+++++++
T Consensus         2 ~l~gK~~l-ITGas------~GIG~ai---a~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v   70 (251)
T d1vl8a_           2 DLRGRVAL-VTGGS------RGLGFGI---AQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEV   70 (251)
T ss_dssp             CCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHH
Confidence            68999999 99999      9999999   6778888888764  99999999999987665 56899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.+++++||+||||||+.  .+..+.+.++|++.+++|+.++++++++++|+|++++.  |+||+++|..+...
T Consensus        71 ~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--G~Ii~i~S~~~~~~  148 (251)
T d1vl8a_          71 KKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDN--PSIINIGSLTVEEV  148 (251)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSS--CEEEEECCGGGTCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccc--ccccccccchhccc
Confidence            999999999999999999999986  35678899999999999999999999999999998887  99999999765432


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      ..           +       ...+|++||+++.+|++++|.|+.++|||||+|+||+|+ ++.+.....  + .....+
T Consensus       149 ~~-----------~-------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~--~-~~~~~~  207 (251)
T d1vl8a_         149 TM-----------P-------NISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSD--P-EKLDYM  207 (251)
T ss_dssp             CS-----------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTC--H-HHHHHH
T ss_pred             cC-----------c-------cccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCC--H-HHHHHH
Confidence            21           2       578999999999999999999999999999999999999 988765322  1 112222


Q ss_pred             hc--cccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         257 SR--VRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       257 ~~--~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      .+  ....+.+|+|.|.      +++...++|+.+ .|.-|+
T Consensus       208 ~~~~pl~R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG~t  249 (251)
T d1vl8a_         208 LKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWT  249 (251)
T ss_dssp             HHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred             HhcCCCCCCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcCee
Confidence            11  2223568999887      677788899865 354443

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=100.00  E-value=1.8e-41  Score=286.49  Aligned_cols=230  Identities=15%  Similarity=0.119  Sum_probs=190.8

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .||+||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.+++++..+++     +.++.+++||++++++
T Consensus         1 ndL~gK~al-VTGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~   65 (254)
T d1hdca_           1 NDLSGKTVI-ITGGA------RGLGAEA---ARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEED   65 (254)
T ss_dssp             CCCCCSEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCcC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEcccCCHHH
Confidence            379999999 99999      9999999   666778888876  48998888777665     4578999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.++++++++++|+|++++.  |+||++||..+..
T Consensus        66 v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~--G~II~isS~~~~~  143 (254)
T d1hdca_          66 WQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGG--GSIVNISSAAGLM  143 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCC--Ceecccccchhcc
Confidence            99999999999999999999999873  5678899999999999999999999999999998888  9999999998877


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       ...+|++||+++.+|++++|.|+.++|||||+|+||+|+ ++......... ......
T Consensus       144 ~~------------~-------~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~~~~~~~~~-~~~~~~  203 (254)
T d1hdca_         144 GL------------A-------LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQG-EGNYPN  203 (254)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTCCCS-TTSCTT
T ss_pred             cc------------c-------chhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCccchhcCHHHH-HHHHhC
Confidence            65            3       678999999999999999999999999999999999999 88876543211 111111


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCcccc-CCcc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPDS-EWMW  288 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w  288 (292)
                      . .+..+...|+|.|.      ++....++|+.+. |.-|
T Consensus       204 ~-pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDGG~  242 (254)
T d1hdca_         204 T-PMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGW  242 (254)
T ss_dssp             S-TTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred             C-CCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCCCc
Confidence            1 02222346898887      6677788898653 5444

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=100.00  E-value=3.2e-41  Score=286.28  Aligned_cols=230  Identities=18%  Similarity=0.148  Sum_probs=194.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|+||++| ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.  +.++.+++||++|+++
T Consensus         4 f~L~GK~al-ITGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~   71 (259)
T d2ae2a_           4 WNLEGCTAL-VTGGS------RGIGYGI---VEELASLGASVYTCSRNQKELNDCLTQWRSK--GFKVEASVCDLSSRSE   71 (259)
T ss_dssp             TCCTTCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCEEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeeCCCHHH
Confidence            579999999 99999      9999999   666778888876  49999999999999876  6789999999999999


Q ss_pred             HHHHHHHHHHhCC-CccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFR-SLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~-~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.++++ +||+||||||+..  ++.+.+.++|++++++|+.+++++++.++|+|.++..  |+||+++|..+.
T Consensus        72 v~~~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--G~Ii~isS~~~~  149 (259)
T d2ae2a_          72 RQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASER--GNVVFISSVSGA  149 (259)
T ss_dssp             HHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSS--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcc--cccccccccccc
Confidence            9999999999987 8999999999863  5678899999999999999999999999999998888  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       ....|++||+++..|++++|.|+.++|||||+|+||+|+ ++.+.............
T Consensus       150 ~~~------------~-------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~  210 (259)
T d2ae2a_         150 LAV------------P-------YEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLN  210 (259)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHH
T ss_pred             ccc------------c-------cccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHH
Confidence            665            3       678999999999999999999999999999999999999 88766533211112222


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+..  ....+.+|+|.|.      ++....++|+.+
T Consensus       211 ~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i  247 (259)
T d2ae2a_         211 KLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQII  247 (259)
T ss_dssp             HHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHhcCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEE
Confidence            2211  2223568999987      667778888865

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.3e-41  Score=281.53  Aligned_cols=219  Identities=15%  Similarity=0.090  Sum_probs=189.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      -.|+||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++.     .++.+++||++|+++
T Consensus         2 G~L~gK~al-ITGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~   66 (244)
T d1nffa_           2 GRLTGKVAL-VSGGA------RGMGASH---VRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQ   66 (244)
T ss_dssp             CTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHH
T ss_pred             cccCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHH
Confidence            368999999 99999      9999999   667888888876  499999988888773     478899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+++++||+||||||+..  ++.+.+.++|++++++|+.++++++++++|.|++++.  |+||++||..+..
T Consensus        67 v~~~~~~~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--G~Ii~isS~~~~~  144 (244)
T d1nffa_          67 WKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGR--GSIINISSIEGLA  144 (244)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCc--ceEEecccccccc
Confidence            99999999999999999999999863  5778899999999999999999999999999998888  9999999998877


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       ...+|+++|+++.+|++++|+|+.++|||||+|+||+|+ +|.+..+.. ..+     
T Consensus       145 ~~------------~-------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~-~~~-----  199 (244)
T d1nffa_         145 GT------------V-------ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPED-IFQ-----  199 (244)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCTT-CSC-----
T ss_pred             cc------------c-------cccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhhHH-HHh-----
Confidence            65            3       678999999999999999999999999999999999999 988765432 110     


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .  ....+.+|+|.|.      ++.....+|+.+
T Consensus       200 ~--pl~R~~~p~diA~~v~fL~s~~s~~itG~~i  231 (244)
T d1nffa_         200 T--ALGRAAEPVEVSNLVVYLASDESSYSTGAEF  231 (244)
T ss_dssp             C--SSSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             c--cccCCCCHHHHHHHHHHHhChhhCCCcCCEE
Confidence            1  1223568999987      667778889854

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=100.00  E-value=3.6e-41  Score=284.02  Aligned_cols=226  Identities=18%  Similarity=0.163  Sum_probs=178.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .|+||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+..  ++..+.+++.  +.++.+++||++|++++
T Consensus         2 rL~gKval-VTGas------~GIG~ai---a~~la~~Ga~V~~~~~~~~--~~~~~~~~~~--g~~~~~~~~Dvs~~~~v   67 (247)
T d2ew8a1           2 RLKDKLAV-ITGGA------NGIGRAI---AERFAVEGADIAIADLVPA--PEAEAAIRNL--GRRVLTVKCDVSQPGDV   67 (247)
T ss_dssp             TTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCC--HHHHHHHHHT--TCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCch--HHHHHHHHHc--CCcEEEEEeeCCCHHHH
Confidence            58999999 99999      9999999   7778889988875  5432  2333344444  57899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.+++|+||+||||||+..  ++.+.+.++|++.+++|+.++++++++++|.|++++.  |+||++||..+..+
T Consensus        68 ~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--G~Iv~isS~~~~~~  145 (247)
T d2ew8a1          68 EAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGW--GRIINLTSTTYWLK  145 (247)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGGSC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCC--CCccccccchhccc
Confidence            9999999999999999999999873  5678899999999999999999999999999999888  99999999988876


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       ....|++||+++..|++++|.|+.++|||||+|+||+|+ ++.+...............
T Consensus       146 ~------------~-------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~  206 (247)
T d2ew8a1         146 I------------E-------AYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNML  206 (247)
T ss_dssp             C------------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC------------------CTT
T ss_pred             C------------c-------ccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchhHHHHHHHh
Confidence            5            3       678999999999999999999999999999999999999 8887653321111111111


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ...+.+.+|+|.|.      ++....++|+.+
T Consensus       207 -~~l~r~~~pedvA~~v~fL~S~~s~~itG~~i  238 (247)
T d2ew8a1         207 -QAIPRLQVPLDLTGAAAFLASDDASFITGQTL  238 (247)
T ss_dssp             -SSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             -ccCCCCCCHHHHHHHHHHHhCchhcCCcCCeE
Confidence             11223568999987      667778899855

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=100.00  E-value=1.3e-40  Score=279.24  Aligned_cols=202  Identities=15%  Similarity=0.178  Sum_probs=176.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE---------EEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL---------FYQNCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~---------v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      |.|+|||||+      +|||+++   +.+|+++|+.         ++.|+.++++++.+++++.  +.++.+++||++|+
T Consensus         1 K~VvlITGas------~GIG~ai---a~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dvt~~   69 (240)
T d2bd0a1           1 KHILLITGAG------KGIGRAI---ALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDM   69 (240)
T ss_dssp             CEEEEEETTT------SHHHHHH---HHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSH
T ss_pred             CCEEEEccCC------CHHHHHH---HHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCH
Confidence            4555699999      9999999   5556666642         3359999999999999876  67899999999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++++.+++|+||+||||||+.  .++.+.+.++|++++++|+.|+++++++++|+|++++.  |+||++||.++
T Consensus        70 ~~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~--G~Ii~isS~~~  147 (240)
T d2bd0a1          70 ADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS--GHIFFITSVAA  147 (240)
T ss_dssp             HHHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCC--CceEEEechhh
Confidence            999999999999999999999999987  35678899999999999999999999999999998887  99999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+.            +       +...|++||+++.+|+++++.|+.++||+||+|+||+|+ +|.++....       
T Consensus       148 ~~~~------------~-------~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~~~-------  201 (240)
T d2bd0a1         148 TKAF------------R-------HSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDE-------  201 (240)
T ss_dssp             TSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCST-------
T ss_pred             cCCC------------C-------CChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcCHh-------
Confidence            8765            3       678999999999999999999999999999999999999 998776432       


Q ss_pred             hhhhccccccCCHHHhhc
Q psy4251         254 SWISRVRPVTNFQVDLTG  271 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~  271 (292)
                           ....+.+|+|.|.
T Consensus       202 -----~~~~~~~PedvA~  214 (240)
T d2bd0a1         202 -----MQALMMMPEDIAA  214 (240)
T ss_dssp             -----TGGGSBCHHHHHH
T ss_pred             -----hHhcCCCHHHHHH
Confidence                 1223458888887

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.7e-40  Score=282.24  Aligned_cols=232  Identities=16%  Similarity=0.101  Sum_probs=187.4

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      |+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+ .+.++++.+++.+.. +.++.+++||++|++++
T Consensus         2 L~gK~al-ITGas------~GIG~ai---A~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v   70 (260)
T d1x1ta1           2 LKGKVAV-VTGST------SGIGLGI---ATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAV   70 (260)
T ss_dssp             CTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHH
T ss_pred             CCcCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHH
Confidence            7899999 99999      9999999   7778888988774  54 678888888887654 56899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.+++|+||+||||||+..  ++.+.+.++|++.+++|+.++++++++++|+|++++.  |+||+++|..+..+
T Consensus        71 ~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~--G~Iv~isS~~~~~~  148 (260)
T d1x1ta1          71 RGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGF--GRIINIASAHGLVA  148 (260)
T ss_dssp             HHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCC--ceEeecccccceec
Confidence            9999999999999999999999873  5678899999999999999999999999999998887  99999999988876


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC--------
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT--------  248 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~--------  248 (292)
                      .            +       ...+|++||+++.+|++++|.|+.++||+||+|+||+|+ +|.+.......        
T Consensus       149 ~------------~-------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~  209 (260)
T d1x1ta1         149 S------------A-------NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQE  209 (260)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------
T ss_pred             c------------C-------CcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChH
Confidence            5            3       678999999999999999999999999999999999999 88765422100        


Q ss_pred             --c-cchhhhhhccccccCCHHHhhc------ccccCCCCCccc-cCCcc
Q psy4251         249 --P-VRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMW  288 (292)
Q Consensus       249 --~-~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w  288 (292)
                        . ..+....  ....+.+|+|.|.      ++.....+|+.+ .|.-|
T Consensus       210 ~~~~~~~~~~~--Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG~  257 (260)
T d1x1ta1         210 TAARELLSEKQ--PSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGW  257 (260)
T ss_dssp             -----CHHHHC--TTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred             HHHHHHHHhcC--CCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcch
Confidence              0 0111111  1223568999887      667778889865 24433

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=100.00  E-value=2.1e-40  Score=279.93  Aligned_cols=233  Identities=16%  Similarity=0.073  Sum_probs=191.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .|+||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++..   +.++.+++||++|++++
T Consensus         3 rL~gK~al-VTGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v   69 (251)
T d1zk4a1           3 RLDGKVAI-ITGGT------LGIGLAI---ATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGW   69 (251)
T ss_dssp             TTTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHH
Confidence            48999999 99999      9999999   667778888876  4999999999888743   45899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.+++|+||+||||||..  .++.+.+.++|++.+++|+.++++++++++|+|++++. .++||++||..+..+
T Consensus        70 ~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~-gg~Ii~isS~~~~~~  148 (251)
T d1zk4a1          70 TKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGL-GASIINMSSIEGFVG  148 (251)
T ss_dssp             HHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCC-CCceEeeeccceecc
Confidence            999999999999999999999987  36788899999999999999999999999999988764 059999999988766


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhH--hcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATL--WYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~--~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .            +       ....|++||+++.+|++++|.|  +.++|||||+|+||+|+ ++.+.............
T Consensus       149 ~------------~-------~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~  209 (251)
T d1zk4a1         149 D------------P-------SLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRT  209 (251)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTT
T ss_pred             C------------C-------CchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHHHHHHh
Confidence            5            3       6789999999999999999998  56889999999999999 88776532211111111


Q ss_pred             hhhccccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      ..  ....+.+|+|.|.      +++...++|+.+ .|.-|+
T Consensus       210 ~~--pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~t  249 (251)
T d1zk4a1         210 KT--PMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGGYT  249 (251)
T ss_dssp             TC--TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred             CC--CCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECcccc
Confidence            11  1223568999987      677788899865 355443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=100.00  E-value=2e-40  Score=281.45  Aligned_cols=228  Identities=15%  Similarity=0.149  Sum_probs=190.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      +||+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+ ++.++++.+++++.  +.++..++||++|++
T Consensus         3 ~dL~gK~al-ITGas------~GIG~ai---a~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dvt~~~   70 (261)
T d1geea_           3 KDLEGKVVV-ITGSS------TGLGKSM---AIRFATEKAKVVVNYRSKEDEANSVLEEIKKV--GGEAIAVKGDVTVES   70 (261)
T ss_dssp             GGGTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCEEEEEECCTTSHH
T ss_pred             CCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc--CCcEEEEEccCCCHH
Confidence            479999999 99999      9999999   7778888888764  65 66788889999876  668999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.+++++||+||||||+..  +..+.+.++|++++++|+.++++++++++|+|.+++. .++||++||..+.
T Consensus        71 ~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~~Iv~isS~~~~  149 (261)
T d1geea_          71 DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI-KGTVINMSSVHEK  149 (261)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccc-cccccccccchhc
Confidence            999999999999999999999999874  5678899999999999999999999999999987763 0569999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       ...+|++||+++.+|++++|.|+.++|||||+|+||+|+ ++.+......   ....
T Consensus       150 ~~~------------~-------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~---~~~~  207 (261)
T d1geea_         150 IPW------------P-------LFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADP---EQRA  207 (261)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSH---HHHH
T ss_pred             ccC------------c-------cccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCH---HHHH
Confidence            665            3       678999999999999999999999999999999999999 8886643210   1112


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+.+  ....+.+|+|.|.      ++....++|+.+
T Consensus       208 ~~~~~~pl~R~~~pediA~~v~fL~S~~s~~itG~~i  244 (261)
T d1geea_         208 DVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITL  244 (261)
T ss_dssp             HHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCeE
Confidence            2211  2223568999988      667778889865

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=100.00  E-value=1.7e-40  Score=279.24  Aligned_cols=221  Identities=15%  Similarity=0.155  Sum_probs=186.9

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      +++ ||||+      +|||+++   +.+|+++|+.|+.   |+.+.++++.+++++.  +.++.++++|++|++++++++
T Consensus         3 V~l-ITGas------~GIG~a~---a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~   70 (244)
T d1edoa_           3 VVV-VTGAS------RGIGKAI---ALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY--GGQAITFGGDVSKEADVEAMM   70 (244)
T ss_dssp             EEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH--TCEEEEEECCTTSHHHHHHHH
T ss_pred             EEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHH
Confidence            556 99999      9999999   7778889987752   6888999999999877  678999999999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++.+++++||+||||||...  ++.+.+.++|++.+++|+.++++++++++|+|++++.  |+||++||..+..+.   
T Consensus        71 ~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--G~IVnisS~~~~~~~---  145 (244)
T d1edoa_          71 KTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK--GRIINIASVVGLIGN---  145 (244)
T ss_dssp             HHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCTHHHHCC---
T ss_pred             HHHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC--cEEEEEcChhhcCCC---
Confidence            999999999999999999873  5678899999999999999999999999999998888  999999999888765   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhhccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVR  260 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~  260 (292)
                               +       +..+|++||+++.+|++++|.|+.++|||||+|+||+++ +|.+..... ....+....  ..
T Consensus       146 ---------~-------~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~-~~~~~~~~~--pl  206 (244)
T d1edoa_         146 ---------I-------GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED-MEKKILGTI--PL  206 (244)
T ss_dssp             ---------T-------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHH-HHHHHHTSC--TT
T ss_pred             ---------C-------CCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHH-HHHHHHhcC--CC
Confidence                     3       678999999999999999999999999999999999999 888765432 111121111  22


Q ss_pred             cccCCHHHhhc-------ccccCCCCCccc
Q psy4251         261 PVTNFQVDLTG-------TAEKVGLSGLPD  283 (292)
Q Consensus       261 ~~~~~~~~~a~-------~~~~~~~~G~~~  283 (292)
                      ..+.+|+|.|.       +++....+|+.+
T Consensus       207 ~R~~~p~dvA~~v~fLa~S~~a~~itG~~i  236 (244)
T d1edoa_         207 GRTGQPENVAGLVEFLALSPAASYITGQAF  236 (244)
T ss_dssp             CSCBCHHHHHHHHHHHHHCSGGGGCCSCEE
T ss_pred             CCCcCHHHHHHHHHHHHCCchhcCCcCCeE
Confidence            23568999887       456666788754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=100.00  E-value=2.1e-40  Score=281.46  Aligned_cols=230  Identities=15%  Similarity=0.133  Sum_probs=191.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      +.|+||+++ ||||+      +|||+++   +..|++.|+.|+  .|+.++++++.+++.+.  +.++..++||++|+++
T Consensus         1 krL~gK~al-ITGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~--g~~~~~~~~Dv~~~~~   68 (260)
T d1zema1           1 KKFNGKVCL-VTGAG------GNIGLAT---ALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEA   68 (260)
T ss_dssp             CTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHH
Confidence            358999999 99999      9999999   666778888876  49999999999999876  6789999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+++++||+||||||+..   ++.+.+.++|++.+++|+.++++++++++|.|.+++.  |+||++||..+.
T Consensus        69 v~~~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~--G~II~isS~~~~  146 (260)
T d1zema1          69 VIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNY--GRIVNTASMAGV  146 (260)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCHHHH
T ss_pred             HHHHHHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcC--CCCCeeechhhc
Confidence            99999999999999999999999763   4678899999999999999999999999999998888  999999999888


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc---------
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR---------  245 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~---------  245 (292)
                      .+.            +       ....|++||+++.+|++++|.|+.++|||||+|+||+|+ ++......         
T Consensus       147 ~~~------------~-------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~  207 (260)
T d1zema1         147 KGP------------P-------NMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQ  207 (260)
T ss_dssp             SCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCT
T ss_pred             cCC------------c-------chHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhccc
Confidence            765            3       678999999999999999999999999999999999999 87643210         


Q ss_pred             --cCCccchhhhhhcccc--ccCCHHHhhc------ccccCCCCCccc
Q psy4251         246 --FGTPVRTFSWISRVRP--VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       246 --~~~~~~~~~~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                        ...+......+....|  .+.+|+|.|.      ++....++|+.+
T Consensus       208 ~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~s~~itG~~i  255 (260)
T d1zema1         208 YFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNL  255 (260)
T ss_dssp             TSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEE
T ss_pred             ccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCeE
Confidence              0111122222211222  2457888876      667778888754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=100.00  E-value=2.2e-40  Score=281.08  Aligned_cols=227  Identities=13%  Similarity=0.154  Sum_probs=190.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +||++| ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++++.  +.++.++++|++|++++++
T Consensus         1 DgKVal-ITGas------~GIG~ai---a~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~--g~~~~~~~~Dvs~~~~v~~   68 (257)
T d2rhca1           1 DSEVAL-VTGAT------SGIGLEI---ARRLGKEGLRVFVCARGEEGLRTTLKELREA--GVEADGRTCDVRSVPEIEA   68 (257)
T ss_dssp             CCCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHH
Confidence            489999 99999      9999999   666788888876  49999999999999876  6689999999999999999


Q ss_pred             HHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHH--HHhcCCCCcEEEEEcCcccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENA--LIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~--l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++.+++++||+||||||+..  ++.+.+.++|++.+++|+.++++++++++|+  |.++..  ++||+++|..+..+
T Consensus        69 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~--g~Ii~i~S~~~~~~  146 (257)
T d2rhca1          69 LVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT--GRIVNIASTGGKQG  146 (257)
T ss_dssp             HHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTE--EEEEEECCGGGTSC
T ss_pred             HHHHHHHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCC--cccccccccccccc
Confidence            99999999999999999999863  5678899999999999999999999999997  455556  89999999988876


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc------CCcc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF------GTPV  250 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~------~~~~  250 (292)
                      .            +       ...+|++||+++.+|++++|.|+.++|||||+|+||+|+ +|.+.....      ....
T Consensus       147 ~------------~-------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~  207 (257)
T d2rhca1         147 V------------V-------HAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTE  207 (257)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHH
T ss_pred             c------------c-------cchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChH
Confidence            5            3       788999999999999999999999999999999999999 887654210      0111


Q ss_pred             chhhhhhcccc--ccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISRVRP--VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .....+....|  .+.+|+|.|.      ++.....+|+.+
T Consensus       208 e~~~~~~~~~PlgR~~~pedia~~v~fL~S~~s~~itG~~i  248 (257)
T d2rhca1         208 EAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQAL  248 (257)
T ss_dssp             HHHHHHHTTSTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCceE
Confidence            22222222222  3568999987      667778888855

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.3e-40  Score=276.43  Aligned_cols=225  Identities=12%  Similarity=0.068  Sum_probs=184.1

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +|+||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.++++++.+++       +..+++||++|++++
T Consensus         2 ~L~gK~~l-ITGas------~GIG~ai---a~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v   64 (242)
T d1ulsa_           2 RLKDKAVL-ITGAA------HGIGRAT---LELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASV   64 (242)
T ss_dssp             TTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHH
Confidence            58999999 99999      9999999   6667788888764  8888888776644       467789999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.+++++||+||||||+..  ++.+.+.++|++.+++|+.++++++++++|.|.++..  ++|+++||.. ..+
T Consensus        65 ~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--~~i~~~ss~~-~~~  141 (242)
T d1ulsa_          65 ERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNP--GSIVLTASRV-YLG  141 (242)
T ss_dssp             HHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--EEEEEECCGG-GGC
T ss_pred             HHHHHHHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccccc--ceeeeecccc-ccC
Confidence            9999999999999999999999873  5678899999999999999999999999999998876  7888877753 333


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                      .            +       +..+|++||+++.+|++++|.|+.++|||||+|+||+|+ ++.+..+.. ....+....
T Consensus       142 ~------------~-------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~-~~~~~~~~~  201 (242)
T d1ulsa_         142 N------------L-------GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEK-VREKAIAAT  201 (242)
T ss_dssp             C------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHH-HHHHHHHTC
T ss_pred             C------------C-------CCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCCHH-HHHHHHhcC
Confidence            3            2       678999999999999999999999999999999999999 988765331 111222222


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCcccc-CCcc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPDS-EWMW  288 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w  288 (292)
                        ....+.+|+|.|.      ++.....+|+.+. |.-|
T Consensus       202 --pl~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~  238 (242)
T d1ulsa_         202 --PLGRAGKPLEVAYAALFLLSDESSFITGQVLFVDGGR  238 (242)
T ss_dssp             --TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred             --CCCCCCCHHHHHHHHHHHhchhhCCCCCcEEEECCCc
Confidence              2233568999987      6677788888653 4443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-40  Score=275.01  Aligned_cols=191  Identities=20%  Similarity=0.225  Sum_probs=173.1

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      +++|.||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.  +.++..+.||++|.+
T Consensus         2 ~~~l~Gkv~l-ITGas------~GIG~~i---a~~la~~G~~V~l~~r~~~~l~~~~~~~~~~--~~~~~~~~~Dvs~~~   69 (244)
T d1yb1a_           2 RKSVTGEIVL-ITGAG------HGIGRLT---AYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNRE   69 (244)
T ss_dssp             CCCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHH
T ss_pred             CCCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHH
Confidence            4789999999 99999      9999999   666778888876  49999999999999876  568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.++++++|+||||||...  +..+.+.+.|++++++|+.|+++++++++|.|.+++.  |+||++||.++.
T Consensus        70 ~v~~~~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~--G~Iv~isS~~~~  147 (244)
T d1yb1a_          70 DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNH--GHIVTVASAAGH  147 (244)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCCC-C
T ss_pred             HHHHHHHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCC--ceEEEeecchhc
Confidence            999999999999999999999999874  5667788999999999999999999999999998888  999999999988


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC---CCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK---YKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~---~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+.            +       .+..|++||+|+.+|+++|+.|+.+   +||+||+|+||+|+ ++.+..
T Consensus       148 ~~~------------~-------~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~  200 (244)
T d1yb1a_         148 VSV------------P-------FLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP  200 (244)
T ss_dssp             CCH------------H-------HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT
T ss_pred             CCC------------C-------CcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc
Confidence            765            3       7889999999999999999999864   58999999999999 988764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=100.00  E-value=9e-40  Score=276.25  Aligned_cols=226  Identities=15%  Similarity=0.107  Sum_probs=188.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..|+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++++++.+++     +.+..++++|++|.++
T Consensus         2 nrL~gK~al-ITGas------~GIG~ai---a~~la~~Ga~V~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~   66 (253)
T d1hxha_           2 NRLQGKVAL-VTGGA------SGVGLEV---VKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEAD   66 (253)
T ss_dssp             CTTTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCCeEEEEeecCCHHH
Confidence            358999999 99999      9999999   7778888888764  8899998888877     4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+++++||+||||||+..  ++.+.+.++|++.+++|+.++++++++++|+|+++ +  |+||++||..+..
T Consensus        67 ~~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~--G~Iv~isS~~~~~  143 (253)
T d1hxha_          67 WTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET-G--GSIINMASVSSWL  143 (253)
T ss_dssp             HHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-C--EEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-C--Cceecccchhhhc
Confidence            99999999999999999999999873  57788999999999999999999999999999754 4  9999999998877


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC--CCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK--YKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~--~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      +.            +       ...+|++||+++..|++++|.|+.+  +|||||+|+||+|+ ++.+............
T Consensus       144 ~~------------~-------~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~  204 (253)
T d1hxha_         144 PI------------E-------QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMV  204 (253)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHH
T ss_pred             Cc------------c-------ccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhhHHHH
Confidence            65            3       6789999999999999999999976  45999999999999 8876644332222222


Q ss_pred             hhhhccccc--cCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPV--TNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~--~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .......++  +.+|+|.|.      +++...++|+.+
T Consensus       205 ~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itG~~i  242 (253)
T d1hxha_         205 LHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSEL  242 (253)
T ss_dssp             BCBTTTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HhCccccccCCCCCHHHHHHHHHHHhChhhCCCcCcEE
Confidence            222112222  457999887      677778888854

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=100.00  E-value=1.3e-39  Score=276.04  Aligned_cols=226  Identities=17%  Similarity=0.161  Sum_probs=186.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .|+||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++     +.++.+++||++|++++
T Consensus         2 ~L~gK~al-VTGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~~~~~~~~~Dvt~~~~v   66 (256)
T d1k2wa_           2 RLDGKTAL-ITGSA------RGIGRAF---AEAYVREGARVAIADINLEAARATAAEI-----GPAACAIALDVTDQASI   66 (256)
T ss_dssp             TTTTEEEE-EETCS------SHHHHHH---HHHHHHTTEEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEeeCCCHHHH
Confidence            48999999 99999      9999999   666778888776  49999999888877     46789999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.|+++++++++|.|.++ ..  |+||++||..+..
T Consensus        67 ~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~--g~Iv~isS~~~~~  144 (256)
T d1k2wa_          67 DRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRG--GKIINMASQAGRR  144 (256)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC--EEEEEECCGGGTS
T ss_pred             HHHHHHHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccC--Cccccccchhhcc
Confidence            9999999999999999999999863  56788999999999999999999999999986554 46  9999999998887


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc-----CC-c
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF-----GT-P  249 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~-----~~-~  249 (292)
                      +.            +       ...+|++||+++.+|++++|.|+.++|||||+|+||+++ ++.+.....     .. .
T Consensus       145 ~~------------~-------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~  205 (256)
T d1k2wa_         145 GE------------A-------LVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPR  205 (256)
T ss_dssp             CC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCT
T ss_pred             cc------------c-------cccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCCh
Confidence            65            3       678999999999999999999999999999999999999 887643210     00 0


Q ss_pred             cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ......+..  ....+.+|+|.|.      +++....+|+.+
T Consensus       206 ~~~~~~~~~~~PlgR~~~p~evA~~v~fL~S~~a~~iTG~~i  247 (256)
T d1k2wa_         206 GEKKRQVGAAVPFGRMGRAEDLTGMAIFLATPEADYIVAQTY  247 (256)
T ss_dssp             THHHHHHHHHSTTSSCBCHHHHHHHHHHTTSGGGTTCCSCEE
T ss_pred             HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCceE
Confidence            111111111  1223568999987      667778888854

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.5e-39  Score=273.95  Aligned_cols=229  Identities=15%  Similarity=0.086  Sum_probs=184.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .|+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+.. +..+++       ...+++||++|.+++
T Consensus         2 ~l~GK~al-ITGas------~GIG~ai---a~~la~~G~~V~~~~~~~~~~-~~~~~~-------~~~~~~~Dv~~~~~v   63 (248)
T d2d1ya1           2 LFAGKGVL-VTGGA------RGIGRAI---AQAFAREGALVALCDLRPEGK-EVAEAI-------GGAFFQVDLEDERER   63 (248)
T ss_dssp             TTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSTTHH-HHHHHH-------TCEEEECCTTCHHHH
T ss_pred             ccCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHH-HHHHHc-------CCeEEEEeCCCHHHH
Confidence            47899999 99999      9999999   7778888988874  665543 334333       345789999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.+++|+||+||||||+..  ++.+.+.++|++.+++|+.|+++++++++|+|++++.  |+||+++|..+..+
T Consensus        64 ~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~--G~Ii~isS~~~~~~  141 (248)
T d2d1ya1          64 VRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGG--GAIVNVASVQGLFA  141 (248)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTSB
T ss_pred             HHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccc--cccccccccccccc
Confidence            9999999999999999999999863  5788899999999999999999999999999998887  99999999988876


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc-CCccchhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF-GTPVRTFSW  255 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~-~~~~~~~~~  255 (292)
                      .            +       ....|++||+++..|++++|+|+.++|||||+|+||+|+ ++.+..... ..+......
T Consensus       142 ~------------~-------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~  202 (248)
T d2d1ya1         142 E------------Q-------ENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRD  202 (248)
T ss_dssp             C------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHH
T ss_pred             c------------c-------ccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHH
Confidence            5            3       788999999999999999999999999999999999999 887654211 111222222


Q ss_pred             hhcccc--ccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         256 ISRVRP--VTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       256 ~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      +....|  .+.+|+|.|.      ++.....+|+.+ .|.-|+
T Consensus       203 ~~~~~pl~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t  245 (248)
T d2d1ya1         203 WEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGMT  245 (248)
T ss_dssp             HHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred             HHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCcCcc
Confidence            212222  3568999887      677788899854 454443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=100.00  E-value=2.8e-39  Score=273.81  Aligned_cols=230  Identities=14%  Similarity=0.073  Sum_probs=188.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++++.  +.++.+++||++|++++++++
T Consensus         2 KVal-ITGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~--g~~~~~~~~Dv~~~~~v~~~~   69 (255)
T d1gega_           2 KVAL-VTGAG------QGIGKAI---ALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAV   69 (255)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHH
T ss_pred             CEEE-EcCCc------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHH
Confidence            4556 99999      9999999   666778888876  49999999999999876  668999999999999999999


Q ss_pred             HHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcccccccCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~~~~~~~~  180 (292)
                      +++.+++|+||+||||||+..  ++.+.+.++|++.+++|+.|+++++++++|+|.+++ .  ++||++||.++..+.  
T Consensus        70 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~--g~Iv~isS~~~~~~~--  145 (255)
T d1gega_          70 EQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHG--GKIINACSQAGHVGN--  145 (255)
T ss_dssp             HHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC--EEEEEECCGGGTSCC--
T ss_pred             HHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccc--cccccccchhhcccC--
Confidence            999999999999999999863  567889999999999999999999999999876653 5  889999999887665  


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc------CCccchh
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF------GTPVRTF  253 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~------~~~~~~~  253 (292)
                                +       ....|++||+++.+|++++|.|+.++|||||+|+||+|+ ++.......      .......
T Consensus       146 ----------~-------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~  208 (255)
T d1gega_         146 ----------P-------ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGT  208 (255)
T ss_dssp             ----------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             ----------c-------ccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHH
Confidence                      3       678999999999999999999999999999999999999 887654211      0011111


Q ss_pred             hhhhcc--ccccCCHHHhhc------ccccCCCCCcccc-CCcc
Q psy4251         254 SWISRV--RPVTNFQVDLTG------TAEKVGLSGLPDS-EWMW  288 (292)
Q Consensus       254 ~~~~~~--~~~~~~~~~~a~------~~~~~~~~G~~~~-~~~w  288 (292)
                      ..+.+.  ...+.+|+|.|.      ++.....+|+.+. |.-|
T Consensus       209 ~~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG~  252 (255)
T d1gega_         209 AEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM  252 (255)
T ss_dssp             HHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred             HHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCcEEEecCCE
Confidence            111111  223568999987      6777888998653 5444

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=100.00  E-value=7.6e-39  Score=273.13  Aligned_cols=234  Identities=16%  Similarity=0.129  Sum_probs=190.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..|+||++| ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++..   ...+.+++||++|+++
T Consensus         2 nrL~gKval-ITGas------~GIG~ai---a~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~   68 (268)
T d2bgka1           2 NRLQDKVAI-ITGGA------GGIGETT---AKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDED   68 (268)
T ss_dssp             CTTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHH
Confidence            358999999 99999      9999999   666778888776  4999999999998854   3468889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++.+++++||+||||||+..    ...+.+.++|++.+++|+.|+++++++++|+|.++..  |+||+++|..+
T Consensus        69 v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~--g~ii~iss~~~  146 (268)
T d2bgka1          69 VRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKK--GSIVFTASISS  146 (268)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTC--EEEEEECCGGG
T ss_pred             HHHHHHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCC--CCccccccccc
Confidence            99999999999999999999999863    2457788999999999999999999999999998887  99999999988


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+..           +       ....|++||+++.+|++++|.|+.++|||||+|+||+|+ ++.+..... ......
T Consensus       147 ~~~~~-----------~-------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~-~~~~~~  207 (268)
T d2bgka1         147 FTAGE-----------G-------VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGV-DSSRVE  207 (268)
T ss_dssp             TCCCT-----------T-------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSC-CHHHHH
T ss_pred             ccccc-----------c-------cccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcC-CHHHHH
Confidence            76542           1       345899999999999999999999999999999999999 888765321 111111


Q ss_pred             hhh-hcccc--ccCCHHHhhc------ccccCCCCCccc-cCCcc
Q psy4251         254 SWI-SRVRP--VTNFQVDLTG------TAEKVGLSGLPD-SEWMW  288 (292)
Q Consensus       254 ~~~-~~~~~--~~~~~~~~a~------~~~~~~~~G~~~-~~~~w  288 (292)
                      ... ....+  .+.+|+|.|.      +++...++|+.+ .|.-|
T Consensus       208 ~~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~  252 (268)
T d2bgka1         208 ELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGY  252 (268)
T ss_dssp             HHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred             HHHHhccccCCCCcCHHHHHHHHHHHhChhhCCccCceEEECcCc
Confidence            111 01112  3568999987      667778899855 35444

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=270.02  Aligned_cols=231  Identities=15%  Similarity=0.079  Sum_probs=190.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+|+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++++++.+++++..++.++.+++||++++++
T Consensus         6 ~~lk~Kv~l-ITGas------~GIG~ai---A~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~   75 (257)
T d1xg5a_           6 ERWRDRLAL-VTGAS------GGIGAAV---ARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEED   75 (257)
T ss_dssp             GGGTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHH
Confidence            459999999 99999      9999999   6667788888764  9999999999999988766799999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+++++||+||||||..  .++.+.+.++|+..+++|+.++++++++++|.|.++..+.|+||++||.++..
T Consensus        76 v~~~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~  155 (257)
T d1xg5a_          76 ILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR  155 (257)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS
T ss_pred             HHHHHHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcC
Confidence            9999999999999999999999986  35788899999999999999999999999999987652239999999998764


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHh--cCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLW--YKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~--~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      ..+                 +.....|+++|+++.+|+++++.|+  .++||+||+|+||.+. ++....... .+....
T Consensus       156 ~~p-----------------~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~-~~~~~~  217 (257)
T d1xg5a_         156 VLP-----------------LSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDK-DPEKAA  217 (257)
T ss_dssp             CCS-----------------CGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTT-CHHHHH
T ss_pred             CCC-----------------CcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChh-hHHHHH
Confidence            321                 1156789999999999999999998  6789999999999999 887765432 222333


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGL  281 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~  281 (292)
                      ...  ......+|+|.|.      ++.....+|+
T Consensus       218 ~~~--~~~r~~~pedvA~~v~fL~s~~a~~itG~  249 (257)
T d1xg5a_         218 ATY--EQMKCLKPEDVAEAVIYVLSTPAHIQIGD  249 (257)
T ss_dssp             HHH--C---CBCHHHHHHHHHHHHHSCTTEEEEE
T ss_pred             hcC--CCCCCcCHHHHHHHHHHHhCChhcCeECC
Confidence            333  3333568999887      3444455564

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.4e-39  Score=272.45  Aligned_cols=216  Identities=13%  Similarity=0.143  Sum_probs=176.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++|+||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.+.             ..++..+++|++|+++
T Consensus         3 psl~gK~~l-ITGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~-------------~~~~~~~~~Dv~~~~~   59 (237)
T d1uzma1           3 PPFVSRSVL-VTGGN------RGIGLAI---AQRLAADGHKVAVTHRGSGA-------------PKGLFGVEVDVTDSDA   59 (237)
T ss_dssp             CCCCCCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSSCC-------------CTTSEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCcch-------------hcCceEEEEecCCHHH
Confidence            468999999 99999      9999999   6778888988875  55322             3467889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+++++||+||||||+..  ++.+.+.++|++++++|+.+++.++++++|+|.+++.  ++||++||..+..
T Consensus        60 v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--g~Iv~isS~~~~~  137 (237)
T d1uzma1          60 VDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKF--GRMIFIGSVSGLW  137 (237)
T ss_dssp             HHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEEECCCCC--
T ss_pred             HHHHHHHHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCC--CceEEEcchhhcc
Confidence            99999999999999999999999863  5678899999999999999999999999999999888  9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       +..+|++||+|+..|+++++.|+.++|||||+|+||+|+ ++.+..... ........
T Consensus       138 ~~------------~-------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~-~~~~~~~~  197 (237)
T d1uzma1         138 GI------------G-------NQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDER-IQQGALQF  197 (237)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHH-HHHHHGGG
T ss_pred             CC------------c-------ccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhccCHH-HHHHHHhc
Confidence            65            2       678999999999999999999999999999999999999 888765321 11122222


Q ss_pred             hhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         256 ISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       256 ~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .  ....+.+|+|.|.      +++....+|+.+
T Consensus       198 ~--pl~R~~~pedvA~~v~fL~S~~s~~itG~~i  229 (237)
T d1uzma1         198 I--PAKRVGTPAEVAGVVSFLASEDASYISGAVI  229 (237)
T ss_dssp             C--TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             C--CCCCCcCHHHHHHHHHHHhCchhcCCcCCeE
Confidence            2  2223578999987      667778889855

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-39  Score=272.13  Aligned_cols=231  Identities=16%  Similarity=0.084  Sum_probs=185.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..|+||+++ ||||+      +|||+++   +..|+++|+.|+.  |++++++++.+++      .++.+++||++|+++
T Consensus         2 ~rl~GK~al-ITGas------~GIG~ai---a~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~   65 (250)
T d1ydea1           2 TRYAGKVVV-VTGGG------RGIGAGI---VRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDD   65 (250)
T ss_dssp             CTTTTCEEE-EETCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHH
Confidence            468999999 99999      9999999   6778888888764  8888887766554      357889999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+++++||+||||||+..   ++.+.+.++|++++++|+.++++++++++|+|+++.   |+||++||..+.
T Consensus        66 v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~---G~Ii~isS~~~~  142 (250)
T d1ydea1          66 VKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ---GNVINISSLVGA  142 (250)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCHHHH
T ss_pred             HHHHHHHHHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC---CCCccccccccc
Confidence            99999999999999999999999753   345788999999999999999999999999998654   899999999888


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cccchh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TPVRTF  253 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~~~~~  253 (292)
                      .+.            +       ...+|+++|+++..|++++|+|+.++|||||+|+||+|+ +|.+...... .+....
T Consensus       143 ~~~------------~-------~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~  203 (250)
T d1ydea1         143 IGQ------------A-------QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASI  203 (250)
T ss_dssp             HCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHH
T ss_pred             ccc------------c-------CcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHH
Confidence            765            3       678999999999999999999999999999999999999 8877643211 111222


Q ss_pred             hhhhc--cccccCCHHHhhc-----ccccCCCCCccc-cCCccc
Q psy4251         254 SWISR--VRPVTNFQVDLTG-----TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       254 ~~~~~--~~~~~~~~~~~a~-----~~~~~~~~G~~~-~~~~w~  289 (292)
                      .....  ....+.+|+|.|.     ..+...++|+-+ .|.-|+
T Consensus       204 ~~~~~~~pl~R~g~p~eva~~v~fL~Sda~~itG~~i~vDGG~~  247 (250)
T d1ydea1         204 REGMLAQPLGRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAE  247 (250)
T ss_dssp             HHHHHTSTTSSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTT
T ss_pred             HHHHhcCCCCCCCCHHHHHHHHHHHhCccCCCcCCeEEECCCcc
Confidence            22111  1223568999987     223567788854 354443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-40  Score=279.81  Aligned_cols=230  Identities=20%  Similarity=0.145  Sum_probs=177.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .||.|.|||||+      +|||+++|+.   |++. |..|+  +|+.+++++++++|++.  +.++.+++||++|.++++
T Consensus         1 ~g~rVAlVTGas------~GIG~a~A~~---la~~~g~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dvs~~~sv~   69 (275)
T d1wmaa1           1 SGIHVALVTGGN------KGIGLAIVRD---LCRLFSGDVVLTARDVTRGQAAVQQLQAE--GLSPRFHQLDIDDLQSIR   69 (275)
T ss_dssp             CCCCEEEESSCS------SHHHHHHHHH---HHHHSSSEEEEEESSHHHHHHHHHHHHHT--TCCCEEEECCTTCHHHHH
T ss_pred             CCCeEEEECCCC------CHHHHHHHHH---HHHhCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEEecCCHHHHH
Confidence            367765599999      9999999554   5443 55544  59999999999999887  567899999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++.+++++||+||||||+..  +..+.+.++|+.++++|++|+++++++++|+|+++    ||||+++|..+..+.
T Consensus        70 ~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~----g~ivnisS~~~~~~~  145 (275)
T d1wmaa1          70 ALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ----GRVVNVSSIMSVRAL  145 (275)
T ss_dssp             HHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEECCHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccceeccc
Confidence            999999999999999999999974  34556778899999999999999999999999654    999999998765432


Q ss_pred             CCCCC----------CCc------------cccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC----CCeEEEEec
Q psy4251         179 ITKDT----------ISK------------SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK----YKIALSSRH  232 (292)
Q Consensus       179 ~~~~~----------~~~------------~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~----~gi~v~~v~  232 (292)
                      .....          ...            +....-......+..+|++||+++.+|++.+++++.+    .||+||+|+
T Consensus       146 ~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~  225 (275)
T d1wmaa1         146 KSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACC  225 (275)
T ss_dssp             HTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEE
T ss_pred             cccchhhhhhhcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            11000          000            0000000111224567999999999999999998854    489999999


Q ss_pred             CCccc-cccccccccCCccchhhhhhccccccCCHHHhhc--------ccccCCCCCccccCC
Q psy4251         233 CCWKI-TVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTG--------TAEKVGLSGLPDSEW  286 (292)
Q Consensus       233 PG~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--------~~~~~~~~G~~~~~~  286 (292)
                      ||+|+ +|.+...                  .++|+|+|+        .++....+|+||.++
T Consensus       226 PG~v~T~m~~~~~------------------~~~pee~A~~~~~~a~~~~~~~~~~G~~~~~~  270 (275)
T d1wmaa1         226 PGWVRTDMAGPKA------------------TKSPEEGAETPVYLALLPPDAEGPHGQFVSEK  270 (275)
T ss_dssp             CCSBCSTTTCTTC------------------SBCHHHHTHHHHHHHSCCTTCCCCCSCEEETT
T ss_pred             cccccCCcccCcc------------------cCCHHHHHHHHHHHHcCChhhcCCCeEEEECC
Confidence            99999 9876542                  347888775        345667799999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=100.00  E-value=2.2e-38  Score=268.41  Aligned_cols=235  Identities=16%  Similarity=0.109  Sum_probs=192.0

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .||+||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++++++.+++++.  +.++.+++||+++.++
T Consensus         2 f~L~gK~al-ITGas------~GIG~ai---a~~la~~G~~V~i~~r~~~~l~~~~~~~~~~--~~~~~~~~~D~s~~~~   69 (258)
T d1ae1a_           2 WSLKGTTAL-VTGGS------KGIGYAI---VEELAGLGARVYTCSRNEKELDECLEIWREK--GLNVEGSVCDLLSRTE   69 (258)
T ss_dssp             CCCTTCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTCHHH
T ss_pred             cCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEeecCCHHH
Confidence            579999999 99999      9999999   777778888776  49999999999999877  6788999999999999


Q ss_pred             HHHHHHHHHHhC-CCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKF-RSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~-~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++++++++.+++ +++|+||||||...  +..+.+.++|++++++|+.++++++++++|.|.++..  |+||++||..+.
T Consensus        70 ~~~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~--g~ii~isS~~~~  147 (258)
T d1ae1a_          70 RDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQN--GNVIFLSSIAGF  147 (258)
T ss_dssp             HHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccc--cccccccccccc
Confidence            999999999998 58999999999874  5678899999999999999999999999999998888  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cccchh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TPVRTF  253 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~~~~~  253 (292)
                      .+.            +       ....|+++|+++.+|++.+|+|+.++|||||+|+||+++ ++.+...... ......
T Consensus       148 ~~~------------~-------~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~  208 (258)
T d1ae1a_         148 SAL------------P-------SVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEI  208 (258)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHH
T ss_pred             ccc------------c-------cchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHH
Confidence            765            3       788999999999999999999999999999999999999 8877653211 122233


Q ss_pred             hhhhc--cccccCCHHHhhc------ccccCCCCCccc-cCCcc
Q psy4251         254 SWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMW  288 (292)
Q Consensus       254 ~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w  288 (292)
                      ..+..  ....+.+|+|.|.      ++....++|+.+ .|.-|
T Consensus       209 ~~~~~~~plgR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~  252 (258)
T d1ae1a_         209 DNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGF  252 (258)
T ss_dssp             HHHHHHSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred             HHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCCe
Confidence            33311  2223679999987      667778899844 35443

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=273.61  Aligned_cols=230  Identities=14%  Similarity=0.154  Sum_probs=188.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCC---CCceEEEEccCCC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKP---SAQCIAMELDLCR   95 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~---~~~~~~~~~Dls~   95 (292)
                      ..|+||++| ||||+      +|||+++   +.+|++.|+.|+.  |+.++++++.++|.+..+   +.++.+++||++|
T Consensus         8 g~L~gKval-ITGas------~GIG~ai---a~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~   77 (297)
T d1yxma1           8 GLLQGQVAI-VTGGA------TGIGKAI---VKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN   77 (297)
T ss_dssp             TTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC
Confidence            569999999 99999      9999999   6667788887764  999999999999987543   5689999999999


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +++++++++++.+++++||+||||||..  .++.+.+.++|++.+++|+.|+++++++++|.|.++..  ++||++||..
T Consensus        78 ~~~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~--g~Ii~~ss~~  155 (297)
T d1yxma1          78 EEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG--GSIVNIIVPT  155 (297)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC--EEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc--cccccccccc
Confidence            9999999999999999999999999986  35678899999999999999999999999999998877  8999987643


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccch
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRT  252 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~  252 (292)
                      . .+.            +       ....|+++|+|+.+|++++|.|+.++|||||+|+||+|+ ++....... ....+
T Consensus       156 ~-~~~------------~-------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~-~~~~~  214 (297)
T d1yxma1         156 K-AGF------------P-------LAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGS-WGQSF  214 (297)
T ss_dssp             T-TCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGG-GGGGG
T ss_pred             c-ccc------------c-------ccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccc-cCHHH
Confidence            2 222            2       678999999999999999999999999999999999999 876543221 11122


Q ss_pred             hhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         253 FSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       253 ~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ......  ....+.+|+|.|.      ++....++|+.+
T Consensus       215 ~~~~~~~~plgR~g~pedvA~~v~fL~Sd~s~~iTG~~i  253 (297)
T d1yxma1         215 FEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSV  253 (297)
T ss_dssp             GTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCcEE
Confidence            222211  2223568999887      566677777755

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3e-38  Score=268.84  Aligned_cols=235  Identities=15%  Similarity=0.093  Sum_probs=179.5

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhC-CCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEK-PSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~   98 (292)
                      .|+||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.. +..++.++++|++++++
T Consensus         2 rl~gKval-VTGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~   71 (264)
T d1spxa_           2 RFAEKVAI-ITGSS------NGIGRAT---AVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAG   71 (264)
T ss_dssp             TTTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHH
T ss_pred             CCCCCEEE-EeCcC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHH
Confidence            48899999 99999      9999999   667778888876  499999999999998763 23579999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ++++++++.+++++||+||||||+..      +..+.+.++|++.+++|+.++++++++++|+|+++.   +++|+++|+
T Consensus        72 v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~---g~iI~~~S~  148 (264)
T d1spxa_          72 QDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISSI  148 (264)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCT
T ss_pred             HHHHHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc---Ccceeeeee
Confidence            99999999999999999999999853      234557889999999999999999999999998765   677777776


Q ss_pred             cc-ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cc
Q psy4251         173 SH-RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TP  249 (292)
Q Consensus       173 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~  249 (292)
                      .+ ..+.            +       ....|++||+|+.+|++++|.|+.++|||||+|+||+|+ +|.+...... ..
T Consensus       149 ~~~~~~~------------~-------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~  209 (264)
T d1spxa_         149 ASGLHAT------------P-------DFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETS  209 (264)
T ss_dssp             TSSSSCC------------T-------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC-----------
T ss_pred             ccccccC------------C-------CchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHH
Confidence            54 4333            2       678899999999999999999999999999999999999 8877642111 11


Q ss_pred             c---chhhhhhccc--cccCCHHHhhc------c-cccCCCCCccc-cCCcc
Q psy4251         250 V---RTFSWISRVR--PVTNFQVDLTG------T-AEKVGLSGLPD-SEWMW  288 (292)
Q Consensus       250 ~---~~~~~~~~~~--~~~~~~~~~a~------~-~~~~~~~G~~~-~~~~w  288 (292)
                      .   .....+.+..  ..+.+|+|.|.      + +....++|+.+ .|.-|
T Consensus       210 ~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~  261 (264)
T d1spxa_         210 KKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGS  261 (264)
T ss_dssp             ---HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred             HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCCh
Confidence            1   1111111112  23568999887      3 34667888854 35444

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=100.00  E-value=1e-38  Score=271.10  Aligned_cols=236  Identities=17%  Similarity=0.115  Sum_probs=188.5

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..+|+||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+.. +.++.+++||+++++
T Consensus         4 ~m~l~gK~al-ITGas------~GIG~ai---a~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~   72 (260)
T d1h5qa_           4 TISFVNKTII-VTGGN------RGIGLAF---TRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTD   72 (260)
T ss_dssp             EECCTTEEEE-EETTT------SHHHHHH---HHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHH
T ss_pred             cccCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHH
Confidence            3579999999 99999      9999999   666778888876  488888888888886654 568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-CCCCcEEEEEcCccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-AKLFARVVVVSSESH  174 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-~~~~~~iV~vsS~~~  174 (292)
                      +++++++++.+++++||+||||||+..  +..+.+.++|++.+++|+.|+++++++++|+|.++ ..  ++|++++|...
T Consensus        73 ~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~--g~i~~~~s~~~  150 (260)
T d1h5qa_          73 IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQK--GSIVVTSSMSS  150 (260)
T ss_dssp             HHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--EEEEEECCGGG
T ss_pred             HHHHHHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccc--eEEEEeecccc
Confidence            999999999999999999999999863  56788999999999999999999999999998544 45  78888887765


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      .....       .     ......+...|+++|+++..|++++|.|+.++|||||+|+||+|+ ++....... ....+.
T Consensus       151 ~~~~~-------~-----~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~-~~~~~~  217 (260)
T d1h5qa_         151 QIINQ-------S-----SLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKK-IRDHQA  217 (260)
T ss_dssp             TSCCE-------E-----ETTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHH-HHHHHH
T ss_pred             ccccc-------c-----ccccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccCHH-HHHHHH
Confidence            43321       0     000111567899999999999999999999999999999999999 888765331 111222


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ...  ....+.+|+|.|.      +++...++|+.+
T Consensus       218 ~~~--pl~R~g~pedvA~~v~fL~S~~s~~itG~~i  251 (260)
T d1h5qa_         218 SNI--PLNRFAQPEEMTGQAILLLSDHATYMTGGEY  251 (260)
T ss_dssp             HTC--TTSSCBCGGGGHHHHHHHHSGGGTTCCSCEE
T ss_pred             hcC--CCCCCcCHHHHHHHHHHHhcchhCCCcCceE
Confidence            222  2223568999887      677778899855

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=100.00  E-value=1.1e-38  Score=269.62  Aligned_cols=213  Identities=14%  Similarity=0.129  Sum_probs=172.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCC-ChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLC-RLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-~~~   97 (292)
                      .||+||+++ ||||+      +|||+++   +.+|++.|+.|+  .|+.++.+ ..+++....++.++.++++|++ +.+
T Consensus         1 m~l~gK~vl-ITGgs------~GIG~~~---A~~la~~G~~vii~~r~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~   69 (254)
T d1sbya1           1 MDLTNKNVI-FVAAL------GGIGLDT---SRELVKRNLKNFVILDRVENPT-ALAELKAINPKVNITFHTYDVTVPVA   69 (254)
T ss_dssp             CCCTTCEEE-EETTT------SHHHHHH---HHHHHHTCCSEEEEEESSCCHH-HHHHHHHHCTTSEEEEEECCTTSCHH
T ss_pred             CCCCCCEEE-EecCC------CHHHHHH---HHHHHHCCCEEEEEECCcccHH-HHHHHHhhCCCCCEEEEEeecCCCHH
Confidence            379999999 99999      9999999   666778887543  46655543 3455666777789999999998 677


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC-CCcEEEEEcCccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK-LFARVVVVSSESHRY  176 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~-~~~~iV~vsS~~~~~  176 (292)
                      +++++++++.+++++||+||||||..      +.++|++++++|+.|+++++++++|.|.++.. +.++||+++|..+..
T Consensus        70 ~~~~~~~~~~~~~g~iDilvnnAG~~------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~  143 (254)
T d1sbya1          70 ESKKLLKKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN  143 (254)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCCCCC------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc
Confidence            89999999999999999999999965      67889999999999999999999999976531 128999999999887


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc-CCccchhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF-GTPVRTFS  254 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~-~~~~~~~~  254 (292)
                      +.            +       .+..|++||+++.+|+++|+.++.++|||||+|+||+|+ +|.+..... .....+..
T Consensus       144 ~~------------~-------~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~  204 (254)
T d1sbya1         144 AI------------H-------QVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAE  204 (254)
T ss_dssp             CC------------T-------TSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHH
T ss_pred             CC------------C-------CCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHh
Confidence            65            3       788999999999999999999999999999999999999 887664321 12222222


Q ss_pred             hhhccccccCCHHHhhc
Q psy4251         255 WISRVRPVTNFQVDLTG  271 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~  271 (292)
                      ..  +.....++++.|+
T Consensus       205 ~~--~~~~~~~~e~va~  219 (254)
T d1sbya1         205 LL--LSHPTQTSEQCGQ  219 (254)
T ss_dssp             HH--TTSCCEEHHHHHH
T ss_pred             cc--ccCCCCCHHHHHH
Confidence            22  3334568888876

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-38  Score=268.28  Aligned_cols=235  Identities=13%  Similarity=0.032  Sum_probs=188.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..|+||++| ||||+      +|||+++|+.+.++..+|+.|+  .|+.++++++.++|....++.++.+++||++++++
T Consensus         2 ~~L~gKval-ITGas------~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~   74 (259)
T d1oaaa_           2 DGLGCAVCV-LTGAS------RGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAG   74 (259)
T ss_dssp             CCCBSEEEE-ESSCS------SHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHH
Confidence            468999999 99999      9999999777666666887766  49999999999999998888899999999999999


Q ss_pred             HHHHHHHHHHh----CCCccEEEEcccccC-----CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy4251          99 VKKFAEEYQKK----FRSLNILVLNAGVFG-----LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVV  169 (292)
Q Consensus        99 v~~~~~~~~~~----~~~id~lI~nAg~~~-----~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~v  169 (292)
                      ++++++.+.+.    ++.+|++|||||...     +..+.+.++|++++++|+.++++++++++|+|++++...++||++
T Consensus        75 v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~i  154 (259)
T d1oaaa_          75 VQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNI  154 (259)
T ss_dssp             HHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEE
T ss_pred             HHHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccc
Confidence            99999998763    457999999999863     235678889999999999999999999999998765222899999


Q ss_pred             cCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC
Q psy4251         170 SSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT  248 (292)
Q Consensus       170 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~  248 (292)
                      ||..+..+.            +       ++..|++||+++.+|+++|+.|  .+|||||+|+||+|+ +|.+.......
T Consensus       155 sS~~~~~~~------------~-------~~~~Y~asKaal~~lt~~la~e--~~gIrVn~v~PG~i~T~~~~~~~~~~~  213 (259)
T d1oaaa_         155 SSLCALQPY------------K-------GWGLYCAGKAARDMLYQVLAAE--EPSVRVLSYAPGPLDNDMQQLARETSK  213 (259)
T ss_dssp             CCGGGTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHH--CTTEEEEEEECCSBSSHHHHHHHHHCS
T ss_pred             ccccccCCC------------c-------cchHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEcCCCCCHHHHHhhhcCC
Confidence            999887765            3       7889999999999999999999  458999999999999 88776432211


Q ss_pred             ccchhhhhhc--cccccCCHHHhhc-----ccccCCCCCccc
Q psy4251         249 PVRTFSWISR--VRPVTNFQVDLTG-----TAEKVGLSGLPD  283 (292)
Q Consensus       249 ~~~~~~~~~~--~~~~~~~~~~~a~-----~~~~~~~~G~~~  283 (292)
                      .......+..  ....+.+|++.|.     ..+....+|+.+
T Consensus       214 ~~~~~~~~~~~~~~~r~~~p~evA~~i~~ll~~~s~~TG~~i  255 (259)
T d1oaaa_         214 DPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKDTFQSGAHV  255 (259)
T ss_dssp             CHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHHCCSCTTEEE
T ss_pred             CHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhhccCCCCCeE
Confidence            1122222211  2233578999987     223346788754

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-38  Score=266.74  Aligned_cols=226  Identities=16%  Similarity=0.089  Sum_probs=182.6

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+||+++ ||||+      +|||+++   +..|+++|+.|+  .|+.++++++.+++.+..++.++.+++||++|+++++
T Consensus         1 i~GKval-ITGas------~GIG~ai---a~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~   70 (254)
T d2gdza1           1 VNGKVAL-VTGAA------QGIGRAF---AEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLR   70 (254)
T ss_dssp             CTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHH
T ss_pred             CCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHH
Confidence            3699999 99999      9999999   666778888876  4999999999999988777789999999999999999


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC-CCcEEEEEcCcccccccC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK-LFARVVVVSSESHRYSYI  179 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~-~~~~iV~vsS~~~~~~~~  179 (292)
                      ++++++.+++|+||+||||||+.      ..++|++.+++|+.+++.++++++|+|.++.. ..|+||++||..+..+. 
T Consensus        71 ~~~~~~~~~~G~iDilVnnAg~~------~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~-  143 (254)
T d2gdza1          71 DTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV-  143 (254)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCC------CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-
T ss_pred             HHHHHHHHHcCCcCeeccccccc------ccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCC-
Confidence            99999999999999999999986      45679999999999999999999999977642 12889999999888765 


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHH--HHhHhcCCCeEEEEecCCccc-cccccccccC---Cccchh
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEK--LATLWYKYKIALSSRHCCWKI-TVSKKWWRFG---TPVRTF  253 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~--la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~---~~~~~~  253 (292)
                                 +       ...+|++||+++.+|+++  |+.|+.++|||||+|+||+|+ +|.+......   ......
T Consensus       144 -----------~-------~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~  205 (254)
T d2gdza1         144 -----------A-------QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYK  205 (254)
T ss_dssp             -----------T-------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGH
T ss_pred             -----------C-------CccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHH
Confidence                       3       678999999999999996  789999999999999999999 8876643210   001111


Q ss_pred             hhhhc--cccccCCHHHhhc----ccccCCCCCccc
Q psy4251         254 SWISR--VRPVTNFQVDLTG----TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~--~~~~~~~~~~~a~----~~~~~~~~G~~~  283 (292)
                      ..+..  ...-+.+|+|.|.    ......++|+.+
T Consensus       206 ~~~~~~~p~~r~~~pedvA~~v~fL~s~~~itG~~i  241 (254)
T d2gdza1         206 DHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIM  241 (254)
T ss_dssp             HHHHHHHHHHCCBCHHHHHHHHHHHHHCTTCSSCEE
T ss_pred             HHHHhcCCCCCCcCHHHHHHHHHHHHcCCCCCCCEE
Confidence            11111  1123568998887    111234788866

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.6e-38  Score=269.58  Aligned_cols=231  Identities=16%  Similarity=0.076  Sum_probs=186.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCC-CCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKP-SAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~   98 (292)
                      .|+||+++ ||||+      +|||+++   +.+|++.|+.|+.  |+.++++++.+++.+... +.++.+++||++++++
T Consensus         1 rL~gK~al-ITGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~   70 (274)
T d1xhla_           1 RFSGKSVI-ITGSS------NGIGRSA---AVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASG   70 (274)
T ss_dssp             CCTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHH
T ss_pred             CCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHH
Confidence            47899999 99999      9999999   6778888888764  999999999999987642 3589999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--C--CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--L--GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESH  174 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~--~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~  174 (292)
                      ++++++++.+++|+||+||||||...  +  ..+.+.++|++.+++|+.++++++++++|+|++++.  ++|+++||.++
T Consensus        71 v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~--g~ii~~ss~~~  148 (274)
T d1xhla_          71 QDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKG--EIVNVSSIVAG  148 (274)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC--EEEEECCGGGS
T ss_pred             HHHHHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccccc--ccccchhhhhc
Confidence            99999999999999999999999752  2  234567889999999999999999999999998877  88888888776


Q ss_pred             ccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCC-c---
Q psy4251         175 RYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGT-P---  249 (292)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~-~---  249 (292)
                      ..+.            +       +..+|++||+++.+|++++|.|+.++|||||+|+||+|+ ++......... .   
T Consensus       149 ~~~~------------~-------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~  209 (274)
T d1xhla_         149 PQAH------------S-------GYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKL  209 (274)
T ss_dssp             SSCC------------T-------TSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHH
T ss_pred             cccC------------C-------CCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHH
Confidence            6554            2       678999999999999999999999999999999999999 88765421100 0   


Q ss_pred             cchhhhhhcccc--ccCCHHHhhc------cc-ccCCCCCccc
Q psy4251         250 VRTFSWISRVRP--VTNFQVDLTG------TA-EKVGLSGLPD  283 (292)
Q Consensus       250 ~~~~~~~~~~~~--~~~~~~~~a~------~~-~~~~~~G~~~  283 (292)
                      ..+.....+..|  .+.+|+|.|.      ++ ....++|+.+
T Consensus       210 ~~~~~~~~~~iPlgR~g~pediA~~v~fL~S~d~s~~itG~~i  252 (274)
T d1xhla_         210 YSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSI  252 (274)
T ss_dssp             HHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEE
T ss_pred             HHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCCccccCccCcEE
Confidence            011111111122  2568999987      43 4667888855

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.7e-38  Score=262.62  Aligned_cols=225  Identities=17%  Similarity=0.128  Sum_probs=181.6

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .||+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++++++.+++      ..+..++||++|+++
T Consensus         1 mdl~GK~al-ITGas------~GIG~ai---a~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~   64 (242)
T d1cyda_           1 LNFSGLRAL-VTGAG------KGIGRDT---VKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDA   64 (242)
T ss_dssp             CCCTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHH
Confidence            479999999 99999      9999999   6677788888764  8888887766654      257788999999998


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHh-cCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIK-GAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~-~~~~~~~iV~vsS~~~~  175 (292)
                      +++++    +++++||+||||||+..  ++.+.+.++|++.+++|+.+++++++.++|.|.+ +.+  |+||+++|..+.
T Consensus        65 v~~~~----~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~--g~ii~isS~~~~  138 (242)
T d1cyda_          65 TEKAL----GGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVP--GSIVNVSSMVAH  138 (242)
T ss_dssp             HHHHH----TTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--EEEEEECCGGGT
T ss_pred             HHHHH----HHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhccc--Ccccccchhhcc
Confidence            87665    45799999999999863  5678899999999999999999999999998654 446  899999999877


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       ....|+++|+++..|++++|.|+.++|||||+|+||+++ ++.+.....   .....
T Consensus       139 ~~~------------~-------~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~---~~~~~  196 (242)
T d1cyda_         139 VTF------------P-------NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSAD---PEFAR  196 (242)
T ss_dssp             SCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCC---HHHHH
T ss_pred             ccC------------C-------ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCC---HHHHH
Confidence            665            3       678999999999999999999999999999999999999 888765322   12222


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      .+..  ....+.+|+|.|.      ++....++|+.+ .|.-|+
T Consensus       197 ~~~~~~pl~R~~~peeva~~v~fL~S~~s~~itG~~i~vDGG~~  240 (242)
T d1cyda_         197 KLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYL  240 (242)
T ss_dssp             HHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTTGG
T ss_pred             HHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCceEEeCcchh
Confidence            2211  2233678999987      677788899855 355453

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=261.24  Aligned_cols=219  Identities=15%  Similarity=0.112  Sum_probs=178.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ..|+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++++++.+++.      .+..+++|++|.++
T Consensus         3 ~~L~GK~~l-ITGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~l~~~~~~~~------~~~~~~~Dv~d~~~   66 (244)
T d1pr9a_           3 LFLAGRRVL-VTGAG------KGIGRGT---VQALHATGARVVAVSRTQADLDSLVRECP------GIEPVCVDLGDWEA   66 (244)
T ss_dssp             CCCTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEECCHHHHHHHHHhcC------CCeEEEEeCCCHHH
Confidence            358999999 99999      9999999   6667788888764  88888877766542      46788999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHH-hcCCCCcEEEEEcCcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALI-KGAKLFARVVVVSSESHR  175 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~-~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++    +++++||+||||||...  ++.+.+.++|++.+++|+.++++++++++|.|. ++..  |+||+++|..+.
T Consensus        67 v~~~~----~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~--g~Ii~isS~~~~  140 (244)
T d1pr9a_          67 TERAL----GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVP--GAIVNVSSQCSQ  140 (244)
T ss_dssp             HHHHH----TTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC--EEEEEECCGGGT
T ss_pred             HHHHH----HHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCc--ceEeeccccccc
Confidence            87765    45799999999999873  567889999999999999999999999999754 4456  999999999887


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .+.            +       ....|++||+++..|++++|.|+.++|||||+|+||+|+ ++.+.....   .....
T Consensus       141 ~~~------------~-------~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~---~~~~~  198 (244)
T d1pr9a_         141 RAV------------T-------NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSD---PHKAK  198 (244)
T ss_dssp             SCC------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCS---HHHHH
T ss_pred             ccc------------c-------chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccC---hHHHH
Confidence            765            3       678999999999999999999999999999999999999 887664322   11122


Q ss_pred             hhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         255 WISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+.+  ....+.+|+|.|.      ++.....+|+.+
T Consensus       199 ~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i  235 (244)
T d1pr9a_         199 TMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTL  235 (244)
T ss_dssp             HHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             HHHhcCCCCCCcCHHHHHHHHHHHhCchhCCcCCcEE
Confidence            2211  2223568999987      677788899865

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.4e-37  Score=265.71  Aligned_cols=230  Identities=15%  Similarity=0.100  Sum_probs=181.6

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhC-CCCceEEEEccCCChHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEK-PSAQCIAMELDLCRLKS   98 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~   98 (292)
                      .|+||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.+.. ++.++.+++||++|+++
T Consensus         2 rL~gK~al-VTGas------~GIG~ai---a~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~   71 (272)
T d1xkqa_           2 RFSNKTVI-ITGSS------NGIGRTT---AILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDG   71 (272)
T ss_dssp             TTTTCEEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHH
T ss_pred             CCCCCEEE-EeCcC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHH
Confidence            58999999 99999      9999999   666778887776  499999999999998763 24579999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCC--C----CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGL--G----FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~--~----~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ++++++++.+++++||+||||||...+  +    .+.+.++|++++++|+.++++++++++|+|+++.   +++|+++|+
T Consensus        72 v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~---g~iI~~~Ss  148 (272)
T d1xkqa_          72 QDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVSSI  148 (272)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCG
T ss_pred             HHHHHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC---Cccccccch
Confidence            999999999999999999999998642  2    2345567999999999999999999999998765   666666665


Q ss_pred             -ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cc
Q psy4251         173 -SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TP  249 (292)
Q Consensus       173 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~  249 (292)
                       ++..+.            +       ....|++||+|+..|++++|.|+.++|||||+|+||+|+ +|........ ..
T Consensus       149 ~a~~~~~------------~-------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~  209 (272)
T d1xkqa_         149 VAGPQAQ------------P-------DFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQAS  209 (272)
T ss_dssp             GGSSSCC------------C-------SSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHH
T ss_pred             hccccCC------------C-------CcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHH
Confidence             445443            2       678999999999999999999999999999999999999 8877642110 00


Q ss_pred             c---chhhhhhcccc--ccCCHHHhhc------ccc-cCCCCCccc
Q psy4251         250 V---RTFSWISRVRP--VTNFQVDLTG------TAE-KVGLSGLPD  283 (292)
Q Consensus       250 ~---~~~~~~~~~~~--~~~~~~~~a~------~~~-~~~~~G~~~  283 (292)
                      .   ..........|  .+.+|+|.|.      +++ ...++|+.+
T Consensus       210 ~~~~~~~~~~~~~~PlgR~g~pediA~~v~fL~S~~as~~iTG~~i  255 (272)
T d1xkqa_         210 QKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSI  255 (272)
T ss_dssp             HHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEE
T ss_pred             HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCcchhCCccCeEE
Confidence            0   11111111122  2568999887      343 345788855

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=100.00  E-value=9.2e-38  Score=262.10  Aligned_cols=226  Identities=15%  Similarity=0.121  Sum_probs=180.8

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .|+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.+++++..+++     +.++.+++||+++++++
T Consensus         2 ~l~gK~al-ItGas------~GIG~ai---a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dls~~~~i   66 (241)
T d2a4ka1           2 RLSGKTIL-VTGAA------SGIGRAA---LDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAVVADVSDPKAV   66 (241)
T ss_dssp             TTTTCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHTC-----CSSEEEEECCTTSHHHH
T ss_pred             cCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCceEEEEecCCCHHHH
Confidence            58999999 99999      9999999   7778889988774  8988877666544     56899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++++.+++++||+||||||..  .++.+.+.++|++.+++|+.+++.++++++|++.++    +.|+++||.+....
T Consensus        67 ~~~~~~i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~----~~i~~~ss~a~~~~  142 (241)
T d2a4ka1          67 EAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG----GSLVLTGSVAGLGA  142 (241)
T ss_dssp             HHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT----CEEEEECCCTTCCH
T ss_pred             HHHHHHHHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccc----cceeeccccccccc
Confidence            999999999999999999999986  356788999999999999999999999999988643    66776666554432


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWI  256 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~  256 (292)
                                   +       +...|+++|+|+++|++++|+|+.++|||||+|+||+|+ ++.+..+.. ....+....
T Consensus       143 -------------~-------~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~-~~~~~~~~~  201 (241)
T d2a4ka1         143 -------------F-------GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPW-AWEQEVGAS  201 (241)
T ss_dssp             -------------H-------HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHH-HHHHHHHTS
T ss_pred             -------------c-------CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHh-HHHHHHhCC
Confidence                         2       778999999999999999999999999999999999999 988765432 112222222


Q ss_pred             hccccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         257 SRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       257 ~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                        ....+.+|+|.|.      ++.....+|+.+ .|.-|+
T Consensus       202 --p~~r~~~p~dva~~v~fL~S~~s~~itG~~i~vDGG~s  239 (241)
T d2a4ka1         202 --PLGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGRS  239 (241)
T ss_dssp             --TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred             --CCCCCcCHHHHHHHHHHHhcchhCCCcCceEEeCCCcc
Confidence              2333668999987      666777888754 354443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=100.00  E-value=3.3e-37  Score=261.68  Aligned_cols=229  Identities=15%  Similarity=0.150  Sum_probs=186.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      +.|+||+++ ||||+      +|||+++   +.+|+++|+.|+.   |+.+.++++.+++.+.  +.++..++||++|.+
T Consensus         2 ~~L~GK~al-ITGas------~GIG~ai---a~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~~~~~   69 (259)
T d1ja9a_           2 KPLAGKVAL-TTGAG------RGIGRGI---AIELGRRGASVVVNYGSSSKAAEEVVAELKKL--GAQGVAIQADISKPS   69 (259)
T ss_dssp             CTTTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCTTSHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc--CCCceEecCCCCCHH
Confidence            568999999 99999      9999999   7778899987763   6777888999999876  668999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.+++++||+||||||...  +..+.+.++|++.+++|+.++++++++++|+|+++    +++++++|..+.
T Consensus        70 ~v~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~----g~~iii~s~~~~  145 (259)
T d1ja9a_          70 EVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG----GRIILTSSIAAV  145 (259)
T ss_dssp             HHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE----EEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC----Cccccccccccc
Confidence            999999999999999999999999873  45678999999999999999999999999999754    788888887665


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-------
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-------  247 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-------  247 (292)
                      ....           +       ....|+++|+++..|++++|+|+.++|||||+|+||+++ +|.+......       
T Consensus       146 ~~~~-----------~-------~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~  207 (259)
T d1ja9a_         146 MTGI-----------P-------NHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKG  207 (259)
T ss_dssp             CCSC-----------C-------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTT
T ss_pred             ccCC-----------C-------CchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhccc
Confidence            4321           2       678999999999999999999999999999999999999 8876532111       


Q ss_pred             C-ccchhhhhhccc--cccCCHHHhhc------ccccCCCCCccc
Q psy4251         248 T-PVRTFSWISRVR--PVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       248 ~-~~~~~~~~~~~~--~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      . ...+...+....  ..+.+|+|.|+      ++....++|+.+
T Consensus       208 ~~~~~~~~~~~~~~pl~R~g~p~eVa~~v~fL~S~~a~~itG~~i  252 (259)
T d1ja9a_         208 MPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVI  252 (259)
T ss_dssp             CCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             CCHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCceE
Confidence            0 011111111112  23568999987      667777888865

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-37  Score=268.69  Aligned_cols=188  Identities=15%  Similarity=0.160  Sum_probs=167.1

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-----------cCHHHHHHHHHHHHhhCCCCceEE
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-----------NCWDKANDAISKILTEKPSAQCIA   88 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-----------r~~~~~~~~~~~l~~~~~~~~~~~   88 (292)
                      +.+|+||++| ||||+      +|||+++   +.+|+++|+.|+.           |+.+.+++..+++...     ...
T Consensus         2 Pm~l~gKval-ITGas------~GIG~ai---A~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~   66 (302)
T d1gz6a_           2 PLRFDGRVVL-VTGAG------GGLGRAY---ALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR-----GGK   66 (302)
T ss_dssp             CCCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT-----TCE
T ss_pred             CcCcCCCEEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhc-----ccc
Confidence            3679999999 99999      9999999   7778899988874           3467788888888654     345


Q ss_pred             EEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEE
Q psy4251          89 MELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARV  166 (292)
Q Consensus        89 ~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~i  166 (292)
                      ..+|+++.++++++++++.+++|+||+||||||+..  ++.+.+.++|++.+++|+.|+++++++++|+|++++.  |+|
T Consensus        67 ~~~d~~~~~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~--G~I  144 (302)
T d1gz6a_          67 AVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY--GRI  144 (302)
T ss_dssp             EEEECCCGGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEE
T ss_pred             cccccchHHHHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCC--cEE
Confidence            678999999999999999999999999999999873  5778899999999999999999999999999998888  999


Q ss_pred             EEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         167 VVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       167 V~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      |++||.++..+.            +       +...|++||+++.+|+++++.|+.++||+||+|+||++. .+....
T Consensus       145 V~isS~~~~~~~------------~-------~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~  203 (302)
T d1gz6a_         145 IMTASASGIYGN------------F-------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVM  203 (302)
T ss_dssp             EEECCHHHHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGS
T ss_pred             EEeCChhhcCCC------------C-------CcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcC
Confidence            999999988765            3       778999999999999999999999999999999999998 655443

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=3.8e-37  Score=259.77  Aligned_cols=194  Identities=20%  Similarity=0.126  Sum_probs=163.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      -|+++ ||||+      +|||+++|+.++++++.|+.|+  +|+.++++++.+ +.+.  +.++.+++||++|+++++++
T Consensus         2 MKtil-ITGas------~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~Dvs~~~~v~~~   71 (248)
T d1snya_           2 MNSIL-ITGCN------RGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LAKN--HSNIHILEIDLRNFDAYDKL   71 (248)
T ss_dssp             CSEEE-ESCCS------SHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHH-HHHH--CTTEEEEECCTTCGGGHHHH
T ss_pred             cCEEE-EeCCC------CHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHhc--CCcEEEEEEEeccHHHHHHH
Confidence            47888 99999      9999999888888888898776  499888877654 4444  45899999999999999999


Q ss_pred             HHHHHH--hCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC---------CCCcEEEE
Q psy4251         103 AEEYQK--KFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA---------KLFARVVV  168 (292)
Q Consensus       103 ~~~~~~--~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~---------~~~~~iV~  168 (292)
                      ++++.+  ++++||+||||||+..   +..+.+.++|++++++|+.|+++++++++|+|+++.         ...++||+
T Consensus        72 ~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~  151 (248)
T d1snya_          72 VADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN  151 (248)
T ss_dssp             HHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEE
T ss_pred             HhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence            999854  6789999999999864   345678889999999999999999999999997641         01289999


Q ss_pred             EcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccc
Q psy4251         169 VSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWW  244 (292)
Q Consensus       169 vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~  244 (292)
                      ++|..+.....                ..+++.+|++||+|+.+|+++++.++.++||+||+|+||+|+ +|.+...
T Consensus       152 i~S~~g~~~~~----------------~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~~~~~  212 (248)
T d1snya_         152 MSSILGSIQGN----------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGSSA  212 (248)
T ss_dssp             ECCGGGCSTTC----------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCTTC
T ss_pred             ccccccccCCC----------------CCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcccccC
Confidence            99987765421                122577999999999999999999999999999999999999 9987653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=100.00  E-value=1.8e-36  Score=258.96  Aligned_cols=233  Identities=16%  Similarity=0.195  Sum_probs=188.5

Q ss_pred             CCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEEEccC
Q psy4251          17 LHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAMELDL   93 (292)
Q Consensus        17 ~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl   93 (292)
                      ++++.+|+||+++ ||||+      +|||+++   +.+|+++|+.|+.   ++.+.++++.+++++.  +.++.++++|+
T Consensus        10 ~~~~~sL~gK~~l-ITGas------~GIG~ai---a~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~--g~~~~~~~~D~   77 (272)
T d1g0oa_          10 GPQSASLEGKVAL-VTGAG------RGIGREM---AMELGRRGCKVIVNYANSTESAEEVVAAIKKN--GSDAACVKANV   77 (272)
T ss_dssp             SGGGGCCTTCEEE-ETTTT------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred             CCCCcCCCCCEEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh--CCceeeEeCCC
Confidence            3346789999999 99999      9999999   6778888988764   4578889999988877  67899999999


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      +|++++.++++++.+++++||++|||+|...  +..+.+.++|++.+++|+.+++.++++++|+|.++    +++++++|
T Consensus        78 ~~~~~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~----g~~i~i~s  153 (272)
T d1g0oa_          78 GVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG----GRLILMGS  153 (272)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT----CEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc----cccccccc
Confidence            9999999999999999999999999999863  56778999999999999999999999999999754    89999988


Q ss_pred             cccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc-
Q psy4251         172 ESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP-  249 (292)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~-  249 (292)
                      ..+.....           +       ....|+++|+++++|++++|+|+.++|||||+|+||+|+ ++.+........ 
T Consensus       154 ~~~~~~~~-----------~-------~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~  215 (272)
T d1g0oa_         154 ITGQAKAV-----------P-------KHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPN  215 (272)
T ss_dssp             GGGTCSSC-----------S-------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTT
T ss_pred             cccccccc-----------c-------chhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhc
Confidence            86554321           2       667899999999999999999999999999999999999 887664322110 


Q ss_pred             -----cchh-hh-hhccc--cccCCHHHhhc------ccccCCCCCccc
Q psy4251         250 -----VRTF-SW-ISRVR--PVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       250 -----~~~~-~~-~~~~~--~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                           .... .. ..+..  ..+.+|+|.|.      ++....++|+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~s~~s~~itG~~i  264 (272)
T d1g0oa_         216 GENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVI  264 (272)
T ss_dssp             CTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEE
T ss_pred             ccccchHHHHHHHHHccCCCCCCcCHHHHHHHHHHHhCchhcCccCceE
Confidence                 0000 00 01112  23568999887      666777888854

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=100.00  E-value=1.9e-36  Score=259.07  Aligned_cols=224  Identities=16%  Similarity=0.125  Sum_probs=178.4

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +|+||+++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++++++.+++     +.++..+++|+++.+++
T Consensus         2 ~L~gK~al-ITGas------~GIG~ai---a~~la~~Ga~V~i~~r~~~~l~~~~~~~-----~~~~~~~~~Dv~~~~~~   66 (276)
T d1bdba_           2 KLKGEAVL-ITGGA------SGLGRAL---VDRFVAEGAKVAVLDKSAERLAELETDH-----GDNVLGIVGDVRSLEDQ   66 (276)
T ss_dssp             TTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHc-----CCCeeEEecccccHHHH
Confidence            58999999 99999      9999999   6778888888764  8998888877765     45899999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCC-------CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~-------~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +++++++.++++++|++|||||+...       +.+.+.+.|++++++|+.|+++++++++|.|++++   |+||+++|.
T Consensus        67 ~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~---g~iI~i~S~  143 (276)
T d1bdba_          67 KQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR---GNVIFTISN  143 (276)
T ss_dssp             HHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCG
T ss_pred             HHHHHHHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC---CCceeeeec
Confidence            99999999999999999999998632       12333456999999999999999999999998764   899999998


Q ss_pred             ccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC----
Q psy4251         173 SHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG----  247 (292)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~----  247 (292)
                      .+..+.            +       ....|++||+++.+|++++|.|+.+ +||||+|+||+|+ +|........    
T Consensus       144 ~~~~~~------------~-------~~~~Y~asKaal~~ltr~lA~ela~-~IrVN~I~PG~i~T~~~~~~~~~~~~~~  203 (276)
T d1bdba_         144 AGFYPN------------G-------GGPLYTAAKHAIVGLVRELAFELAP-YVRVNGVGSGGINSDLRGPSSLGMGSKA  203 (276)
T ss_dssp             GGTSTT------------S-------SCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECCCCSCCCCCGGGC-----
T ss_pred             hhccCC------------C-------CCchHHHHHHHHHHHHHHHHHHhhc-ceEEcccCCCCEecCcCCccchhhhhhc
Confidence            877665            3       6788999999999999999999987 5999999999999 8865432110    


Q ss_pred             -Cccchhhhhhccccc--cCCHHHhhc------c-cccCCCCCccc
Q psy4251         248 -TPVRTFSWISRVRPV--TNFQVDLTG------T-AEKVGLSGLPD  283 (292)
Q Consensus       248 -~~~~~~~~~~~~~~~--~~~~~~~a~------~-~~~~~~~G~~~  283 (292)
                       ....+...+....|+  +.+|+|.|.      + +....++|+.+
T Consensus       204 ~~~~~~~~~~~~~~PlgR~g~peeva~~v~fL~S~~~a~~itG~~i  249 (276)
T d1bdba_         204 ISTVPLADMLKSVLPIGRMPEVEEYTGAYVFFATRGDAAPATGALL  249 (276)
T ss_dssp             ----CHHHHHTTTCTTSSCCCGGGGSHHHHHHHCHHHHTTCSSCEE
T ss_pred             cCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCeeCcEE
Confidence             111122222222233  568888876      3 35667888865

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.8e-37  Score=259.42  Aligned_cols=230  Identities=10%  Similarity=0.043  Sum_probs=178.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          21 STYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      .||+||+++ ||||+      +  |||+++   +.+|+++|+.|+.  |+++ ..+..+++...  ..+..++++|++|+
T Consensus         4 ~~L~gK~al-ITGas------~~~GIG~ai---A~~la~~Ga~V~i~~~~~~-~~~~~~~~~~~--~~~~~~~~~D~~~~   70 (256)
T d1ulua_           4 VDLSGKKAL-VMGVT------NQRSLGFAI---AAKLKEAGAEVALSYQAER-LRPEAEKLAEA--LGGALLFRADVTQD   70 (256)
T ss_dssp             ECCTTCEEE-EESCC------CSSSHHHHH---HHHHHHTTCEEEEEESSGG-GHHHHHHHHHH--TTCCEEEECCTTCH
T ss_pred             cCCCCCEEE-EECCC------CCchHHHHH---HHHHHHCCCEEEEEeCcHH-HHHHHHHhhhc--cCcccccccccCCH
Confidence            579999999 99987      6  999999   6667788888764  5543 34444555555  45678899999999


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          97 KSVKKFAEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        97 ~~v~~~~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      ++++++++++.+++++||+||||||+..      +..+.+.++|+..+++|+.+++.++++++|.|+++    |+||++|
T Consensus        71 ~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~----G~Iv~is  146 (256)
T d1ulua_          71 EELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREG----GGIVTLT  146 (256)
T ss_dssp             HHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE----EEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccC----CEEEEEe
Confidence            9999999999999999999999999753      34566778899999999999999999999988654    8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       ...+|++||+++.+|++++|.|+.++|||||+|+||++. ++.+.....   
T Consensus       147 S~~~~~~~------------~-------~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~---  204 (256)
T d1ulua_         147 YYASEKVV------------P-------KYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGF---  204 (256)
T ss_dssp             CGGGTSBC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------C---
T ss_pred             ehHhcCCC------------C-------CchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhh---
Confidence            99887665            3       678999999999999999999999999999999999999 877664321   


Q ss_pred             cchhhhhhcc--ccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         250 VRTFSWISRV--RPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       250 ~~~~~~~~~~--~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      ......+.+.  ...+.+|+|.|.      ++.....+|+.+ .|.-|+
T Consensus       205 ~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~  253 (256)
T d1ulua_         205 TKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYH  253 (256)
T ss_dssp             HHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred             HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCCeEEECcCEe
Confidence            1222222112  223568999987      677778899865 365554

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.7e-36  Score=254.85  Aligned_cols=216  Identities=19%  Similarity=0.128  Sum_probs=161.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +.|++| ||||+      +|||+++   +.+|+++|+  .|+  +|+.++++++.    +.. +.++.+++||++|.+++
T Consensus         2 ~~Ktil-ITGas------sGIG~a~---a~~la~~G~~~~Vi~~~R~~~~~~~l~----~~~-~~~~~~~~~Dvs~~~~v   66 (250)
T d1yo6a1           2 SPGSVV-VTGAN------RGIGLGL---VQQLVKDKNIRHIIATARDVEKATELK----SIK-DSRVHVLPLTVTCDKSL   66 (250)
T ss_dssp             CCSEEE-ESSCS------SHHHHHH---HHHHHTCTTCCEEEEEESSGGGCHHHH----TCC-CTTEEEEECCTTCHHHH
T ss_pred             cCCEEE-EeCCC------CHHHHHH---HHHHHHCCCCCEEEEEeCCHHHHHHHH----Hhh-CCceEEEEEecCCHHHH
Confidence            358888 99999      9999999   666777774  454  58887776543    332 56899999999999999


Q ss_pred             HHHHHHHHHhCC--CccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC---------CCcE
Q psy4251         100 KKFAEEYQKKFR--SLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK---------LFAR  165 (292)
Q Consensus       100 ~~~~~~~~~~~~--~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~---------~~~~  165 (292)
                      +++++++.+.++  +||+||||||+..   +..+.+.++|++++++|++|++++++.++|+|+++..         ..++
T Consensus        67 ~~~~~~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~  146 (250)
T d1yo6a1          67 DTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAA  146 (250)
T ss_dssp             HHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCE
T ss_pred             HHHHHHHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecc
Confidence            999999998766  4999999999864   3566788899999999999999999999999976521         1278


Q ss_pred             EEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccc
Q psy4251         166 VVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWW  244 (292)
Q Consensus       166 iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~  244 (292)
                      ++++++.........            ....+.+..+|++||+|+.+|++++++|+.++||+||+|+||+|+ +|.+...
T Consensus       147 ~i~~s~~~~~~~~~~------------~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~~~  214 (250)
T d1yo6a1         147 VITISSGLGSITDNT------------SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNA  214 (250)
T ss_dssp             EEEECCGGGCSTTCC------------STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC---------
T ss_pred             ccccccccccccCCc------------ccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCCCC
Confidence            999988766554310            112223567899999999999999999999999999999999999 9876542


Q ss_pred             ccCCccchhhhhhccccccCCHHHhhc------ccccCCCCCcccc
Q psy4251         245 RFGTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPDS  284 (292)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~~  284 (292)
                      .                  .+|++.+.      .......+|+||.
T Consensus       215 ~------------------~~~e~~a~~~~~~~~~~~~~~sG~f~~  242 (250)
T d1yo6a1         215 A------------------LTVEQSTAELISSFNKLDNSHNGRFFM  242 (250)
T ss_dssp             ----------------------HHHHHHHHHHHTTCCGGGTTCEEE
T ss_pred             C------------------CCHHHHHHHHHHHHhcCCCCCCeEEEC
Confidence            2                  36677665      2223345899874

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=9.8e-37  Score=257.62  Aligned_cols=218  Identities=11%  Similarity=0.084  Sum_probs=174.9

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      |+| ||||+      +|||+++   +.+|+++|+.|+.  |+.++++++.. +...       +.++|+++.++++++++
T Consensus         2 TAl-VTGas------~GiG~ai---A~~la~~Ga~V~i~~r~~~~~~~~~~-~~~~-------~~~~dv~~~~~~~~~~~   63 (252)
T d1zmta1           2 TAI-VTNVK------HFGGMGS---ALRLSEAGHTVACHDESFKQKDELEA-FAET-------YPQLKPMSEQEPAELIE   63 (252)
T ss_dssp             EEE-ESSTT------STTHHHH---HHHHHHTTCEEEECCGGGGSHHHHHH-HHHH-------CTTSEECCCCSHHHHHH
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHh-hhCc-------EEEeccCCHHHHHHHHH
Confidence            688 99999      9999999   7778899999886  66666655433 3222       24689999999999999


Q ss_pred             HHHHhCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      ++.+++|+||+||||||+..   +..+.+.++|++.+++|+.++++++++++|+|++++.  |+||++||..+..+.   
T Consensus        64 ~~~~~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~--G~IV~isS~~~~~~~---  138 (252)
T d1zmta1          64 AVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS--GHIIFITSATPFGPW---  138 (252)
T ss_dssp             HHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--CEEEEECCSTTTSCC---
T ss_pred             HHHHHcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccccc--ceeeccccccccccc---
Confidence            99999999999999999753   4567889999999999999999999999999998887  999999999887665   


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccccccc---CCccchhhhhh
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRF---GTPVRTFSWIS  257 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~---~~~~~~~~~~~  257 (292)
                               +       ....|++||+++..|++++|+|+.++|||||+|+||+|+ ++.......   .........+.
T Consensus       139 ---------~-------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~  202 (252)
T d1zmta1         139 ---------K-------ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVK  202 (252)
T ss_dssp             ---------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHH
T ss_pred             ---------c-------cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHH
Confidence                     2       678999999999999999999999999999999999999 877653211   01111222222


Q ss_pred             cccc--ccCCHHHhhc------ccccCCCCCccc
Q psy4251         258 RVRP--VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       258 ~~~~--~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      +..|  .+.+|+|.|.      +++....+|+.+
T Consensus       203 ~~~pl~R~g~pedvA~~v~fL~S~~s~~iTG~~i  236 (252)
T d1zmta1         203 KVTALQRLGTQKELGELVAFLASGSCDYLTGQVF  236 (252)
T ss_dssp             HHSSSSSCBCHHHHHHHHHHHHTTSCGGGTTCEE
T ss_pred             hcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeE
Confidence            2222  3568999987      566667788755

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.3e-36  Score=249.18  Aligned_cols=216  Identities=15%  Similarity=0.055  Sum_probs=171.6

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      |+||++| ||||+      +|||+++   +.+|+++|+.|+.  |+.+.+++       .    ...++.||+++.    
T Consensus         2 LkgK~~l-VTGas------~GIG~ai---a~~l~~~Ga~V~~~~r~~~~l~~-------~----~~~~~~~Dv~~~----   56 (234)
T d1o5ia_           2 IRDKGVL-VLAAS------RGIGRAV---ADVLSQEGAEVTICARNEELLKR-------S----GHRYVVCDLRKD----   56 (234)
T ss_dssp             CTTCEEE-EESCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHH-------T----CSEEEECCTTTC----
T ss_pred             CCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHh-------c----CCcEEEcchHHH----
Confidence            6899999 99999      9999999   6778888888764  87655432       2    335678999864    


Q ss_pred             HHHHHHHHhCCCccEEEEccccc--CCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                        ++.+.+++++||+||||||..  .+..+.+.++|++.+++|+.++++++++++|.|++++.  |+||+++|..+..+.
T Consensus        57 --~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~--G~ii~i~S~~~~~~~  132 (234)
T d1o5ia_          57 --LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGW--GRIVAITSFSVISPI  132 (234)
T ss_dssp             --HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCGGGTSCC
T ss_pred             --HHHHHHHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccc--ccccccccccccccc
Confidence              345566789999999999986  35677899999999999999999999999999998887  999999998777654


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhhhh
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWIS  257 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~  257 (292)
                                  +       ....|+++|+++..|++++|+|+.++|||||+|+||+++ ++.+..........+.... 
T Consensus       133 ------------~-------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~-  192 (234)
T d1o5ia_         133 ------------E-------NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQI-  192 (234)
T ss_dssp             ------------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTS-
T ss_pred             ------------c-------ccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcCHHHHHHHHhcC-
Confidence                        2       678999999999999999999999999999999999999 8876653321111222222 


Q ss_pred             ccccccCCHHHhhc------ccccCCCCCccc-cCCcc
Q psy4251         258 RVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMW  288 (292)
Q Consensus       258 ~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w  288 (292)
                       ....+.+|+|.|.      ++....++|+.+ .|.-|
T Consensus       193 -pl~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~  229 (234)
T d1o5ia_         193 -PMRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGL  229 (234)
T ss_dssp             -TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred             -CCCCCcCHHHHHHHHHHHhChhhcCCcCcEEEECccc
Confidence             2223568999987      677888899966 35443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=100.00  E-value=1.7e-34  Score=249.44  Aligned_cols=243  Identities=16%  Similarity=0.067  Sum_probs=191.0

Q ss_pred             HHHHhhcccCCCC---CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhC
Q psy4251           7 YLKQHLLNKLLHP---ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEK   81 (292)
Q Consensus         7 ~~~~~~~~~~~~~---~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~   81 (292)
                      -+++.++.+.+.+   ..+|+||++| ||||+      +|||+++   +.+|++.|+.|+  .|+.+++++..+++.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~gK~al-ITGas------~GIG~ai---A~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~   73 (294)
T d1w6ua_           4 ALQSKFFSPLQKAMLPPNSFQGKVAF-ITGGG------TGLGKGM---TTLLSSLGAQCVIASRKMDVLKATAEQISSQT   73 (294)
T ss_dssp             HHHHHHSCCCCSCCSCTTTTTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcCcccccCCCCCCCCCCEEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc
Confidence            3567777776654   3589999999 99999      9999999   666778887776  499999999999997765


Q ss_pred             CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc
Q psy4251          82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG  159 (292)
Q Consensus        82 ~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~  159 (292)
                       +.++.+++||+++.++++++++.+.+++++||+||||||...  +..+.+.++++..+.+|+.+.+.+++...+.+...
T Consensus        74 -g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  152 (294)
T d1w6ua_          74 -GNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKA  152 (294)
T ss_dssp             -SSCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCceEEEEecccChHHHHHHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccc
Confidence             568899999999999999999999999999999999999864  45667888999999999999999998887776544


Q ss_pred             -CCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-
Q psy4251         160 -AKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-  237 (292)
Q Consensus       160 -~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-  237 (292)
                       ..  +.+++++|..+..+.            +       ...+|+++|+|+..|++++|.|+.++|||||+|+||+|+ 
T Consensus       153 ~~~--~~i~~~ss~~~~~~~------------~-------~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T  211 (294)
T d1w6ua_         153 QKG--AAFLSITTIYAETGS------------G-------FVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKT  211 (294)
T ss_dssp             TCC--EEEEEECCTHHHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC
T ss_pred             ccc--ccccccccchhhhcc------------c-------ccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCcccc
Confidence             34  778888887777655            3       678899999999999999999999999999999999999 


Q ss_pred             cccccccccCCccchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc
Q psy4251         238 TVSKKWWRFGTPVRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      ++....... . ........+  ....+.+|+|.|.      ++....++|+.+
T Consensus       212 ~~~~~~~~~-~-~~~~~~~~~~~pl~R~~~pediA~~v~fL~sd~s~~itG~~i  263 (294)
T d1w6ua_         212 KGAFSRLDP-T-GTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVI  263 (294)
T ss_dssp             ------CCT-T-SHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             chhhhccCC-c-HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCchhcCCCCcEE
Confidence            877654321 1 112222211  2233668999987      556667788754

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=247.29  Aligned_cols=191  Identities=17%  Similarity=0.185  Sum_probs=170.0

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      +..|+||+++ ||||+      +|||+++   +.+|+++|+.|+  .|+.++++++.+++.... +..+..+.+|+++.+
T Consensus         9 ~~~L~GK~al-ITGas------sGIG~ai---A~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~   77 (269)
T d1xu9a_           9 PEMLQGKKVI-VTGAS------KGIGREM---AYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMT   77 (269)
T ss_dssp             GGGGTTCEEE-ESSCS------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHH
T ss_pred             ccccCCCEEE-EeCCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHH
Confidence            3459999999 99999      9999999   666778888776  499999999999887665 568999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      ++..+.+.+.+.++.+|++|+|||...  +..+.+.++|++++++|+.|++.+++.++|+|+++ .  |+||++||.++.
T Consensus        78 ~~~~~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~-~--G~ii~isS~~~~  154 (269)
T d1xu9a_          78 FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-N--GSIVVVSSLAGK  154 (269)
T ss_dssp             HHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T--CEEEEEEEGGGT
T ss_pred             HHHHHHHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc-C--CcceEeccchhc
Confidence            999999999999999999999999863  45677889999999999999999999999999764 4  899999999888


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+.            +       ....|++||+|+.+|+++|+.|+.  +.||+||+|+||+|+ +|.++.
T Consensus       155 ~~~------------p-------~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~~~  206 (269)
T d1xu9a_         155 VAY------------P-------MVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKA  206 (269)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHH
T ss_pred             CCC------------C-------CchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHHHh
Confidence            765            3       788999999999999999999986  357999999999999 887764

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=252.79  Aligned_cols=184  Identities=20%  Similarity=0.171  Sum_probs=149.8

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE---EE--EcCHH---HHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL---FY--QNCWD---KANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~---v~--~r~~~---~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      |+|+|||||+      +|||+++   +..|++.|+.   |.  .|+.+   ++++..+++...  +.++.+++||++|.+
T Consensus         2 kkVvlITGas------sGIG~a~---A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~   70 (285)
T d1jtva_           2 RTVVLITGCS------SGIGLHL---AVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACP--PGSLETLQLDVRDSK   70 (285)
T ss_dssp             CEEEEESCCS------SHHHHHH---HHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCC--TTSEEEEECCTTCHH
T ss_pred             CCEEEEccCC------CHHHHHH---HHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhcc--CCceEEEeccccchH
Confidence            4455599999      9999999   5556566543   33  35544   344444444333  679999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR  175 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~  175 (292)
                      +++++++++.+  +.+|+||||||...  +..+.+.++|++.+++|+.|+++++++++|+|.+++.  |+||++||.++.
T Consensus        71 ~~~~~~~~~~~--g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~--G~Iv~isS~~g~  146 (285)
T d1jtva_          71 SVAAARERVTE--GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS--GRVLVTGSVGGL  146 (285)
T ss_dssp             HHHHHHHTCTT--SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEEEEGGGT
T ss_pred             hhhhhhhhccc--cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCC--CceEEEechhhc
Confidence            99999988743  78999999999873  5677899999999999999999999999999998887  999999999988


Q ss_pred             cccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccc
Q psy4251         176 YSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKW  243 (292)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~  243 (292)
                      .+.            +       ....|++||+++.+|+++|+.|+.++||+||+|+||+|+ +|.++.
T Consensus       147 ~~~------------~-------~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~  196 (285)
T d1jtva_         147 MGL------------P-------FNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKV  196 (285)
T ss_dssp             SCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------
T ss_pred             CCC------------C-------CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHh
Confidence            775            3       678999999999999999999999999999999999999 988764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=237.51  Aligned_cols=226  Identities=12%  Similarity=0.130  Sum_probs=175.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .|+||+++ ||||+      +|||+++   +..|+++|+.|+.  |++++++++.+       ...+....+|+.+.+.+
T Consensus         3 ~l~gK~al-ITGas------~GIG~ai---a~~la~~G~~Vi~~~r~~~~l~~~~~-------~~~~~~~~~d~~~~~~~   65 (245)
T d2ag5a1           3 RLDGKVII-LTAAA------QGIGQAA---ALAFAREGAKVIATDINESKLQELEK-------YPGIQTRVLDVTKKKQI   65 (245)
T ss_dssp             TTTTCEEE-ESSTT------SHHHHHH---HHHHHHTTCEEEEEESCHHHHGGGGG-------STTEEEEECCTTCHHHH
T ss_pred             CCCCCEEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEeCCHHHHHHHHh-------ccCCceeeeeccccccc
Confidence            48999999 99999      9999999   6667788888774  88877665432       23577788898876655


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +.+    .+.++++|+||||||...  ++.+.+.++|++.+++|+.+++++++++.|.|.+++.  |+||+++|..+...
T Consensus        66 ~~~----~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~--g~Ii~isS~~~~~~  139 (245)
T d2ag5a1          66 DQF----ANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKS--GNIINMSSVASSVK  139 (245)
T ss_dssp             HHH----HHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC--EEEEEECCSBTTTB
T ss_pred             ccc----ccccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCC--ceeeeeechhhccC
Confidence            544    455689999999999874  4677899999999999999999999999999998888  99999999876542


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Cccchhhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TPVRTFSW  255 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~~~~~~~  255 (292)
                      ..           +       ....|+++|+++.+|++++|.|++++|||||+|+||+|+ ++.+...... ........
T Consensus       140 ~~-----------~-------~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~  201 (245)
T d2ag5a1         140 GV-----------V-------NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARND  201 (245)
T ss_dssp             CC-----------T-------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHH
T ss_pred             Cc-----------c-------chhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHH
Confidence            21           2       678899999999999999999999999999999999999 8876543211 11122222


Q ss_pred             hhcccc--ccCCHHHhhc------ccccCCCCCcccc-CCcc
Q psy4251         256 ISRVRP--VTNFQVDLTG------TAEKVGLSGLPDS-EWMW  288 (292)
Q Consensus       256 ~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~~-~~~w  288 (292)
                      +....|  .+.+|+|.|+      +++....+|+.+. |.-|
T Consensus       202 ~~~~~pl~R~~~pedva~~v~fL~s~~s~~iTG~~i~VDGG~  243 (245)
T d2ag5a1         202 FLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGW  243 (245)
T ss_dssp             HHHTCTTSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred             HHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCceEEeCCCc
Confidence            211222  2568899987      6777888998653 5544

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-33  Score=235.32  Aligned_cols=226  Identities=16%  Similarity=0.079  Sum_probs=175.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++|+||++| ||||+      +|||+++   +.+|++.|+.|+.  |+.+++++..+++     +.+.....+|+.+.+.
T Consensus         1 ~slkGKval-ITGas------~GIG~ai---a~~la~~G~~V~~~~r~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~   65 (248)
T d2o23a1           1 RSVKGLVAV-ITGGA------SGLGLAT---AERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFAPADVTSEKD   65 (248)
T ss_dssp             CCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECTTSSHHHHHHHH-----CTTEEEEECCTTCHHH
T ss_pred             CCCCCCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCCccccccccccccc
Confidence            479999999 99999      9999999   7778888888764  8888888888777     4578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC----CCcEE
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK----LFARV  166 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~----~~~~i  166 (292)
                      +++...++......+|.+++|+++..        +..+.+.+.|++.+++|+.++++++++++|+|..+..    +.|+|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~I  145 (248)
T d2o23a1          66 VQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVI  145 (248)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEE
T ss_pred             ccccccccccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEE
Confidence            99999999998899999999987652        2345577899999999999999999999999865421    23899


Q ss_pred             EEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc
Q psy4251         167 VVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR  245 (292)
Q Consensus       167 V~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~  245 (292)
                      |++||..+..+.            +       +..+|++||+|+.+|++++++|+.++|||||+|+||+++ ++....+.
T Consensus       146 i~isS~~~~~~~------------~-------~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~  206 (248)
T d2o23a1         146 INTASVAAFEGQ------------V-------GQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPE  206 (248)
T ss_dssp             EEECCTHHHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-------
T ss_pred             EEecchhhccCC------------C-------CchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCH
Confidence            999999988765            3       778999999999999999999999999999999999999 98877643


Q ss_pred             cCCccchhhhhhccccccCCHHHhhc----ccccCCCCCcc
Q psy4251         246 FGTPVRTFSWISRVRPVTNFQVDLTG----TAEKVGLSGLP  282 (292)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~~~~G~~  282 (292)
                      . ....+.... .+...+.+|+|.|.    ..+...++|+.
T Consensus       207 ~-~~~~~~~~~-pl~~R~g~peevA~~v~fL~s~~~itGq~  245 (248)
T d2o23a1         207 K-VCNFLASQV-PFPSRLGDPAEYAHLVQAIIENPFLNGEV  245 (248)
T ss_dssp             ----CHHHHTC-SSSCSCBCHHHHHHHHHHHHHCTTCCSCE
T ss_pred             H-HHHHHHhcC-CCCCCCcCHHHHHHHHHHHHhCCCCCceE
Confidence            2 111222211 01123568999887    22234556653

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.97  E-value=3.1e-30  Score=221.18  Aligned_cols=229  Identities=13%  Similarity=0.087  Sum_probs=167.3

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE---cCHHHHHHHHHHHHhhCCCCceEEE--------------
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ---NCWDKANDAISKILTEKPSAQCIAM--------------   89 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~---r~~~~~~~~~~~l~~~~~~~~~~~~--------------   89 (292)
                      ++| ||||+      +|||+++   +.+|++.|+.|+.   |+.+.++++.+++.+..+ .....+              
T Consensus         4 VAl-ITGas------~GIG~ai---A~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~   72 (284)
T d1e7wa_           4 VAL-VTGAA------KRLGRSI---AEGLHAEGYAVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVATAPVSG   72 (284)
T ss_dssp             EEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSCBCCCC-
T ss_pred             EEE-EeCCC------CHHHHHH---HHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcC-CceEEEEeeccccccccccc
Confidence            566 99999      9999999   7778888988763   678889999999987764 344444              


Q ss_pred             ---EccCCChHHHHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchh--------------hhhhhhhhHHHHHHH
Q psy4251          90 ---ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFE--------------TTFQVNHLAHFYLTL  150 (292)
Q Consensus        90 ---~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~--------------~~~~vN~~~~~~l~~  150 (292)
                         .+|+++.++++++++++.+++|+||+||||||...  +..+.+.++|+              ..+.+|+.+++++++
T Consensus        73 ~~~~~dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~  152 (284)
T d1e7wa_          73 ADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIK  152 (284)
T ss_dssp             ---CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccccccCCCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeec
Confidence               55699999999999999999999999999999874  34455555544              468999999999999


Q ss_pred             HHHHHHHhcC----CCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCe
Q psy4251         151 QLENALIKGA----KLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI  226 (292)
Q Consensus       151 ~ll~~l~~~~----~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi  226 (292)
                      .+.+.+...+    ...++||+++|.....+.            +       +..+|++||+++..|++++|+|+.++||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~ii~~~s~~~~~~~------------~-------~~~~Y~asKaal~~lt~~lA~el~~~gI  213 (284)
T d1e7wa_         153 AFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL------------L-------GYTIYTMAKGALEGLTRSAALELAPLQI  213 (284)
T ss_dssp             HHHHHHHTSCGGGSCSCEEEEEECCTTTTSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred             cccchhhhhHHHhcCCCCcccccccccccCCc------------c-------ceeeeccccccchhhhHHHHHHhCCccc
Confidence            9988764321    112789999888766654            2       6789999999999999999999999999


Q ss_pred             EEEEecCCccc-cccccccccCCccchhhhhhccccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         227 ALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       227 ~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      |||+|+||++. ......  . ......... .+...+.+|+|.|.      +++...++|+.+ .|.-|+
T Consensus       214 rvN~I~PG~t~~~~~~~~--~-~~~~~~~~~-pl~~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~s  280 (284)
T d1e7wa_         214 RVNGVGPGLSVLVDDMPP--A-VWEGHRSKV-PLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS  280 (284)
T ss_dssp             EEEEEEESSBCCGGGSCH--H-HHHHHHTTC-TTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred             cccccccccccccccCCH--H-HHHHHHhcC-CCCCCCCCHHHHHHHHHHHhCchhcCccCCeEEECcChh
Confidence            99999999876 222111  0 001111111 01123568999987      667778899854 455443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=3.9e-31  Score=220.95  Aligned_cols=204  Identities=11%  Similarity=-0.004  Sum_probs=160.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +||++| ||||+      +|||+++   +..|+++|+.|+.  ++..+            .......+.+|.++.++++.
T Consensus         1 egK~vl-ITGas------~GIG~a~---a~~l~~~G~~V~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~   58 (236)
T d1dhra_           1 EARRVL-VYGGR------GALGSRC---VQAFRARNWWVASIDVVENE------------EASASVIVKMTDSFTEQADQ   58 (236)
T ss_dssp             CCCEEE-EETTT------SHHHHHH---HHHHHTTTCEEEEEESSCCT------------TSSEEEECCCCSCHHHHHHH
T ss_pred             CCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEeCCccc------------cccccceeecccCcHHHHHH
Confidence            589999 99999      9999999   6667789988875  33211            13456677899999999998


Q ss_pred             HHHHHHHhC--CCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         102 FAEEYQKKF--RSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       102 ~~~~~~~~~--~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +.+++.+.+  ++||+||||||...   +..+.+.+.|++.+++|+.++++++++++|+|+++    |+||++||.++..
T Consensus        59 ~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~----G~Iv~isS~~~~~  134 (236)
T d1dhra_          59 VTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG----GLLTLAGAKAALD  134 (236)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE----EEEEEECCGGGGS
T ss_pred             HHHHHHHHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc----cceeEEccHHHcC
Confidence            888887764  47999999999753   34555678899999999999999999999999653    9999999998876


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-cccccccccCCccchh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKKWWRFGTPVRTF  253 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~  253 (292)
                      +.            +       ....|++||+|+.+|+++++.|+.  +.||+||+|+||+|+ +|.+...+.   ..+-
T Consensus       135 ~~------------~-------~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~~~~~~---~~~~  192 (236)
T d1dhra_         135 GT------------P-------GMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPE---ADFS  192 (236)
T ss_dssp             CC------------T-------TBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTT---SCGG
T ss_pred             Cc------------c-------CCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcchhhCcc---chhh
Confidence            65            3       678999999999999999999998  579999999999999 988765332   1122


Q ss_pred             hhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         254 SWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+        .+|++.|.      .+.....+|...
T Consensus       193 ~~--------~~pe~va~~~~~l~s~~~~~i~G~~i  220 (236)
T d1dhra_         193 SW--------TPLEFLVETFHDWITGNKRPNSGSLI  220 (236)
T ss_dssp             GS--------EEHHHHHHHHHHHHTTTTCCCTTCEE
T ss_pred             cC--------CCHHHHHHHHHHHhCCCccCCCCCeE
Confidence            22        35777766      445555677643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.4e-29  Score=214.29  Aligned_cols=229  Identities=10%  Similarity=0.030  Sum_probs=177.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .|+||+++ ||||+      +  |||+++   +..|+++|+.|+.  |+++. ++..+++...  ..+...+++|+++..
T Consensus         2 ~L~gK~~l-ITGas------s~~GIG~ai---A~~l~~~G~~V~i~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~   68 (258)
T d1qsga_           2 FLSGKRIL-VTGVA------SKLSIAYGI---AQAMHREGAELAFTYQNDKL-KGRVEEFAAQ--LGSDIVLQCDVAEDA   68 (258)
T ss_dssp             TTTTCEEE-ECCCC------STTSHHHHH---HHHHHHTTCEEEEEESSTTT-HHHHHHHHHH--TTCCCEEECCTTCHH
T ss_pred             cCCCCEEE-EECCC------CchhHHHHH---HHHHHHcCCEEEEEeCCHHH-HHHHHHHHhh--cCCcceeecccchHH
Confidence            47899999 99998      8  899999   6667788888763  77443 4444555555  456788899999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCC-------CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLG-------FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~-------~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      ++..+.+++.+.++++|++|+||+.....       .....+.|...+.+|+.+.+.+++.+.|.+.+.    +.||++|
T Consensus        69 ~~~~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Ii~is  144 (258)
T d1qsga_          69 SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPG----SALLTLS  144 (258)
T ss_dssp             HHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEEE
T ss_pred             HHHHHHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCC----cEEEEec
Confidence            99999999999999999999999886321       234556688899999999999999999988543    7899999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       ....|++||++++.|++++|+|+.++|||||+|+||+|. ++.......   
T Consensus       145 s~~~~~~~------------~-------~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~---  202 (258)
T d1qsga_         145 YLGAERAI------------P-------NYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDF---  202 (258)
T ss_dssp             CGGGTSBC------------T-------TTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTH---
T ss_pred             chhhccCC------------C-------CcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchh---
Confidence            98777654            2       567899999999999999999999999999999999999 887764321   


Q ss_pred             cchhhhhhc--cccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         250 VRTFSWISR--VRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       250 ~~~~~~~~~--~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      ........+  ......+|+|.|.      ++.....+|+.+ .|.-|+
T Consensus       203 ~~~~~~~~~~~pl~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~  251 (258)
T d1qsga_         203 RKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFS  251 (258)
T ss_dssp             HHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred             hhHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCccCceEEECcCHH
Confidence            122222111  1223578999987      566778899855 366554

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.2e-29  Score=211.87  Aligned_cols=203  Identities=9%  Similarity=-0.047  Sum_probs=156.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +++++ ||||+      +|||+++   +.+|+++|+.|+.  |+.++          .  ......+.+|+++.++....
T Consensus         2 ~gkVl-ITGas------~GIG~ai---a~~l~~~G~~V~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~   59 (235)
T d1ooea_           2 SGKVI-VYGGK------GALGSAI---LEFFKKNGYTVLNIDLSAND----------Q--ADSNILVDGNKNWTEQEQSI   59 (235)
T ss_dssp             CEEEE-EETTT------SHHHHHH---HHHHHHTTEEEEEEESSCCT----------T--SSEEEECCTTSCHHHHHHHH
T ss_pred             CCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCchh----------c--ccccceeccccCchhHHHHH
Confidence            34567 99999      9999999   6667788888875  54321          1  23556678899998888887


Q ss_pred             HHHHHH--hCCCccEEEEcccccC---CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251         103 AEEYQK--KFRSLNILVLNAGVFG---LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus       103 ~~~~~~--~~~~id~lI~nAg~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .+.+..  ++++||+||||||...   +..+.+.+.|+.++++|+.++++++++++|+|+++    |+||++||..+..+
T Consensus        60 ~~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~----g~Iv~isS~~~~~~  135 (235)
T d1ooea_          60 LEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG----GLLQLTGAAAAMGP  135 (235)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE----EEEEEECCGGGGSC
T ss_pred             HHHHHHHhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc----eEEEEeccHHhcCC
Confidence            777776  4589999999999752   33444567899999999999999999999999653    89999999988776


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc--CCCeEEEEecCCccc-cccccccccCCccchhh
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY--KYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFS  254 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~--~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~  254 (292)
                      .            +       .+..|++||+|+.+|+++++.|+.  ..+|+||+|+||+++ ++.+......   .+- 
T Consensus       136 ~------------~-------~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~~~~~~---~~~-  192 (235)
T d1ooea_         136 T------------P-------SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWMPNA---DHS-  192 (235)
T ss_dssp             C------------T-------TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHSTTC---CGG-
T ss_pred             c------------c-------cccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcchhhhCcCC---ccc-
Confidence            5            3       778999999999999999999997  468999999999999 8887654321   111 


Q ss_pred             hhhccccccCCHHHhhc-------ccccCCCCCccc
Q psy4251         255 WISRVRPVTNFQVDLTG-------TAEKVGLSGLPD  283 (292)
Q Consensus       255 ~~~~~~~~~~~~~~~a~-------~~~~~~~~G~~~  283 (292)
                             ...+|++.++       .+.....+|..+
T Consensus       193 -------~~~~~~~va~~~~~~l~~~~~~~~tG~~i  221 (235)
T d1ooea_         193 -------SWTPLSFISEHLLKWTTETSSRPSSGALL  221 (235)
T ss_dssp             -------GCBCHHHHHHHHHHHHHCGGGCCCTTCEE
T ss_pred             -------cCCCHHHHHHHHHHHhcCccccCCCceEE
Confidence                   1236777665       344455677654

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=4.7e-29  Score=218.18  Aligned_cols=186  Identities=10%  Similarity=-0.017  Sum_probs=144.3

Q ss_pred             CCceEEEEcC--CCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCC----------CCceEEE
Q psy4251          24 NGCLAILCTG--DMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKP----------SAQCIAM   89 (292)
Q Consensus        24 ~g~~~vlItG--a~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~----------~~~~~~~   89 (292)
                      ++|+++ |||  ++      +|||+++   +..|+++|+.|+.  ++................          .......
T Consensus         1 n~kVAl-ITGaa~s------~GIG~ai---A~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (329)
T d1uh5a_           1 NEDICF-IAGIGDT------NGYGWGI---AKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDML   70 (329)
T ss_dssp             CCCEEE-EECCSSS------SSHHHHH---HHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEE
T ss_pred             CCcEEE-EeCCCCC------ChHHHHH---HHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcc
Confidence            478888 999  66      7999999   7778899998875  333332222222222111          0112233


Q ss_pred             E--------------------ccCCChHHHHHHHHHHHHhCCCccEEEEcccccC----CCCCCCCcchhhhhhhhhhHH
Q psy4251          90 E--------------------LDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG----LGFSHTEDGFETTFQVNHLAH  145 (292)
Q Consensus        90 ~--------------------~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~----~~~~~~~~~~~~~~~vN~~~~  145 (292)
                      .                    +|+++.++++++++++.+++|+||+||||||...    ++.+.+.++|++++++|+.+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~  150 (329)
T d1uh5a_          71 PFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSL  150 (329)
T ss_dssp             ECCTTCSSGGGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHH
T ss_pred             cccceehhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHH
Confidence            3                    3677888999999999999999999999999753    456778899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC-C
Q psy4251         146 FYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK-Y  224 (292)
Q Consensus       146 ~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~-~  224 (292)
                      +.++++++|+|+++    |+||++||.++..+.+           .       ....|+++|+++++|++++|.|+.+ +
T Consensus       151 ~~~~k~~~~~m~~~----GsIv~iss~~~~~~~p-----------~-------y~~~y~asKaal~~ltr~lA~Ela~~~  208 (329)
T d1uh5a_         151 ISLCKYFVNIMKPQ----SSIISLTYHASQKVVP-----------G-------YGGGMSSAKAALESDTRVLAYHLGRNY  208 (329)
T ss_dssp             HHHHHHHGGGEEEE----EEEEEEECGGGTSCCT-----------T-------CTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccc----cccccceeehhccccc-----------c-------cchhhhhhhccccccchhhHHHHhccc
Confidence            99999999999653    8999999988776541           0       2457999999999999999999975 5


Q ss_pred             CeEEEEecCCccc-cccc
Q psy4251         225 KIALSSRHCCWKI-TVSK  241 (292)
Q Consensus       225 gi~v~~v~PG~v~-~~~~  241 (292)
                      |||||+|+||+|+ +..+
T Consensus       209 gIRVNaI~PG~i~T~a~~  226 (329)
T d1uh5a_         209 NIRINTISAGPLKSRAAT  226 (329)
T ss_dssp             CCEEEEEEECCCCCTTGG
T ss_pred             CcEEEEEecCcccchhhh
Confidence            9999999999997 5433

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.96  E-value=5.8e-29  Score=214.60  Aligned_cols=228  Identities=12%  Similarity=-0.047  Sum_probs=165.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcc--cchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCC----------CCce
Q psy4251          21 STYNGCLAILCTGDMEFYPRYT--GLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKP----------SAQC   86 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~--GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~----------~~~~   86 (292)
                      .||+||++| ||||+      +  |||+++   +.+|+++|+.|+.  |+.+..............          ...-
T Consensus         4 ~~L~gK~al-VTGas------s~~GIG~ai---A~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (297)
T d1d7oa_           4 IDLRGKRAF-IAGIA------DDNGYGWAV---AKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIK   73 (297)
T ss_dssp             CCCTTCEEE-EECCS------SSSSHHHHH---HHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEE
T ss_pred             cCCCCCEEE-EECCC------CCchHHHHH---HHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhh
Confidence            789999999 99986      5  999999   7778889988875  443332222221111110          0011


Q ss_pred             EEEEcc--------------------CCChHHHHHHHHHHHHhCCCccEEEEccccc----CCCCCCCCcchhhhhhhhh
Q psy4251          87 IAMELD--------------------LCRLKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNH  142 (292)
Q Consensus        87 ~~~~~D--------------------ls~~~~v~~~~~~~~~~~~~id~lI~nAg~~----~~~~~~~~~~~~~~~~vN~  142 (292)
                      ...++|                    .++..+++++++++.+++++||+||||||..    .++.+.+.++|++.+++|+
T Consensus        74 ~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~  153 (297)
T d1d7oa_          74 KVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASS  153 (297)
T ss_dssp             EEEEECTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred             hhhhhhhhccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchh
Confidence            233333                    3566778899999999999999999999975    2456789999999999999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhc
Q psy4251         143 LAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWY  222 (292)
Q Consensus       143 ~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~  222 (292)
                      .+++.++++++|.+.++    ++++++++.+......           +       ....|+++|+++..+++.++.++.
T Consensus       154 ~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~-----------~-------~~~~y~~aKaa~~~l~~~~a~e~~  211 (297)
T d1d7oa_         154 YSFVSLLSHFLPIMNPG----GASISLTYIASERIIP-----------G-------YGGGMSSAKAALESDTRVLAFEAG  211 (297)
T ss_dssp             HHHHHHHHHHGGGEEEE----EEEEEEECGGGTSCCT-----------T-------CTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHhhcC----Ccceeeeehhhccccc-----------c-------cccceecccccccccccccchhcc
Confidence            99999999999887654    6777777765543321           1       556899999999999999999995


Q ss_pred             -CCCeEEEEecCCccc-cccccccccCCccchhhhhhcccc--ccCCHHHhhc------ccccCCCCCccc
Q psy4251         223 -KYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSWISRVRP--VTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       223 -~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                       ++|||||+|+||++. ++.+.....   ..+........|  .+.+|+|.|.      ++....++|+.+
T Consensus       212 ~~~gIrvN~I~PG~i~T~~~~~~~~~---~~~~~~~~~~~PlgR~~~peevA~~v~fL~S~~a~~itGq~i  279 (297)
T d1d7oa_         212 RKQNIRVNTISAGPLGSRAAKAIGFI---DTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATI  279 (297)
T ss_dssp             HHHCCEEEEEEECCCBCCCSSCCSHH---HHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             ccceEEecccccccccchhhhhccCC---HHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCchhcCCcCceE
Confidence             579999999999999 887764221   122222222222  2568999987      677778888854

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.96  E-value=4.6e-28  Score=206.64  Aligned_cols=233  Identities=12%  Similarity=-0.007  Sum_probs=160.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      .|+||+++ ||||+    ..+|||+++   +.+|+++|+.|+.  |+ +++++.++++.+.  +....+.++|+++.+++
T Consensus         2 ~L~gK~al-ITGaa----g~~GIG~Ai---A~~la~~Ga~V~i~~r~-~~~~~~~~~l~~~--~~~~~~~~~d~~~~~~~   70 (274)
T d2pd4a1           2 FLKGKKGL-IVGVA----NNKSIAYGI---AQSCFNQGATLAFTYLN-ESLEKRVRPIAQE--LNSPYVYELDVSKEEHF   70 (274)
T ss_dssp             TTTTCEEE-EECCC----STTSHHHHH---HHHHHTTTCEEEEEESS-TTTHHHHHHHHHH--TTCCCEEECCTTCHHHH
T ss_pred             cCCCCEEE-EECCC----CCcHHHHHH---HHHHHHCCCEEEEEeCC-HHHHHHHHHHHhh--CCceeEeeecccchhhH
Confidence            47899999 99975    003999999   7778899988874  66 3455566777766  45677889999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCC---CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGL---GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~---~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      +++++++.+.++++|++|+|+|....   ..+...+.+.....++....+.........+...+. .+.|+++++.+...
T Consensus        71 ~~~~~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~~~~~~  149 (274)
T d2pd4a1          71 KSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN-GASVLTLSYLGSTK  149 (274)
T ss_dssp             HHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-EEEEEEEECGGGTS
T ss_pred             HHHHHHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhcccccccccccccccccccc-Ccceeeeccccccc
Confidence            99999999999999999999998742   222233333333333333333333333333333233 04455555555444


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCccchhhh
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTPVRTFSW  255 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~~~~~~~  255 (292)
                      +.            +       ....|+++|+++.+++++++.|+.++|||||+|+||++. ++.......   ......
T Consensus       150 ~~------------~-------~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~---~~~~~~  207 (274)
T d2pd4a1         150 YM------------A-------HYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADF---RMILKW  207 (274)
T ss_dssp             BC------------T-------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTH---HHHHHH
T ss_pred             cc------------c-------cchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCch---HHHHHH
Confidence            33            2       567899999999999999999999999999999999999 887664321   111111


Q ss_pred             h--hccccccCCHHHhhc------ccccCCCCCccc-cCCcc
Q psy4251         256 I--SRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMW  288 (292)
Q Consensus       256 ~--~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w  288 (292)
                      .  .....-+.+|+|.|.      ++....++|+.+ .|.-|
T Consensus       208 ~~~~~p~~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~  249 (274)
T d2pd4a1         208 NEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY  249 (274)
T ss_dssp             HHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred             HhhhhhccCCcCHHHHHHHHHHHhChhhCCCcCceEEECCCh
Confidence            1  112234579999987      666777888855 35443

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.95  E-value=4.4e-27  Score=199.45  Aligned_cols=229  Identities=11%  Similarity=0.034  Sum_probs=165.7

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhCCCCceEEEEccCCC----hHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEKPSAQCIAMELDLCR----LKSV   99 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~----~~~v   99 (292)
                      ++| ||||+      +|||+++   +.+|+++|+.|+.  |+ ++..+++.+++.... +.+....++|+.+    .+.+
T Consensus         3 vAl-VTGas------~GIG~ai---a~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   71 (266)
T d1mxha_           3 AAV-ITGGA------RRIGHSI---AVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCC   71 (266)
T ss_dssp             EEE-ETTCS------SHHHHHH---HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHH
T ss_pred             EEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCchHHHHHHHHHHHhhc-CCceEEEecccccchhHHHHH
Confidence            677 99999      9999999   7778889988774  55 566788888898776 3467777766654    5667


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCC-------------CCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC---CC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGF-------------SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK---LF  163 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~-------------~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~---~~  163 (292)
                      +++++++.+++++||+||||||+..+..             +.....+...+.+|+.+.+.+.+...+.+.....   ..
T Consensus        72 ~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (266)
T d1mxha_          72 EDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRN  151 (266)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhcccccccccccccc
Confidence            7888888889999999999999864211             1123446677888999999988888776643321   12


Q ss_pred             cEEEEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-ccccc
Q psy4251         164 ARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKK  242 (292)
Q Consensus       164 ~~iV~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~  242 (292)
                      +.++++++..+..+.            +       +...|++||++++.|++++|+++.++|||||+|+||+++ ++...
T Consensus       152 ~~~~~~~~~~~~~~~------------~-------~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~  212 (266)
T d1mxha_         152 LSVVNLCDAMTDLPL------------P-------GFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP  212 (266)
T ss_dssp             EEEEEECCGGGGSCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC
T ss_pred             ccchhhhhccccccC------------c-------chhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC
Confidence            678888887766554            3       788999999999999999999999999999999999999 65543


Q ss_pred             ccccCCccchhhhhhccccccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         243 WWRFGTPVRTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      ....   ..+.... .+.....+|+|.|.      +++....+|+.+ .|.-|+
T Consensus       213 ~~~~---~~~~~~~-pl~r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~~  262 (266)
T d1mxha_         213 QETQ---EEYRRKV-PLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLI  262 (266)
T ss_dssp             HHHH---HHHHTTC-TTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred             HHHH---HHHHhcC-CCCCCCCCHHHHHHHHHHHhCchhCCccCCeEEECccHh
Confidence            2111   1111111 11223468999988      666777899854 465554

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.95  E-value=2.5e-27  Score=201.25  Aligned_cols=231  Identities=10%  Similarity=-0.076  Sum_probs=165.6

Q ss_pred             CCCCCceEEEEcC--CCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCCh
Q psy4251          21 STYNGCLAILCTG--DMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRL   96 (292)
Q Consensus        21 ~~l~g~~~vlItG--a~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~   96 (292)
                      ..|+||++| |||  ++      +|||+++   +.+|++.|+.|+.  |+.++..   +++.+.. +.+...++||+++.
T Consensus         2 ~~l~gK~~l-ItGaag~------~GIG~ai---A~~la~~Ga~Vil~~~~~~~~~---~~~~~~~-~~~~~~~~~dv~~~   67 (268)
T d2h7ma1           2 GLLDGKRIL-VSGIITD------SSIAFHI---ARVAQEQGAQLVLTGFDRLRLI---QRITDRL-PAKAPLLELDVQNE   67 (268)
T ss_dssp             CTTTTCEEE-ECCCSST------TCHHHHH---HHHHHHTTCEEEEEECSCHHHH---HHHHTTS-SSCCCEEECCTTCH
T ss_pred             CCCCCCEEE-EECCCCC------CHHHHHH---HHHHHHcCCEEEEEeCChHHHH---HHHHHHc-CCceeeEeeecccc
Confidence            358999999 999  56      7999999   6678888888774  6665543   3333333 56788899999999


Q ss_pred             HHHHHHHHHHHHh---CCCccEEEEcccccC-------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEE
Q psy4251          97 KSVKKFAEEYQKK---FRSLNILVLNAGVFG-------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARV  166 (292)
Q Consensus        97 ~~v~~~~~~~~~~---~~~id~lI~nAg~~~-------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~i  166 (292)
                      +++.++++.+.+.   +++||++|||||+..       +..+.+.+.+..++.+|..+.+...+...+.+.  +   +.+
T Consensus        68 ~~~~~~~~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~  142 (268)
T d2h7ma1          68 EHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMN--P---GGS  142 (268)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE--E---EEE
T ss_pred             cccccccchhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcc--c---ccc
Confidence            9999999998765   467999999999752       224566788899999999999988888776543  2   344


Q ss_pred             EEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccc
Q psy4251         167 VVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWR  245 (292)
Q Consensus       167 V~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~  245 (292)
                      ++++|.....+.            +       ....|+++|+++.+|++++++++.++|||||+|+||+|+ ++.+....
T Consensus       143 i~~~s~~~~~~~------------p-------~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~  203 (268)
T d2h7ma1         143 IVGMDFDPSRAM------------P-------AYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVG  203 (268)
T ss_dssp             EEEEECCCSSCC------------T-------TTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHT
T ss_pred             cccccccccccC------------c-------ccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhcc
Confidence            444444333332            2       678999999999999999999999999999999999999 87764332


Q ss_pred             cCCccc-------hhhhhhcccc---ccCCHHHhhc------ccccCCCCCccc-cCCccc
Q psy4251         246 FGTPVR-------TFSWISRVRP---VTNFQVDLTG------TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       246 ~~~~~~-------~~~~~~~~~~---~~~~~~~~a~------~~~~~~~~G~~~-~~~~w~  289 (292)
                      ......       +........|   .+.+|+|.|.      ++....++|+.+ .|.-+|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~pl~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~~  264 (268)
T d2h7ma1         204 GALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAH  264 (268)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGG
T ss_pred             chhhhhhccchHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCcc
Confidence            111111       1111111122   2568999887      666777889843 454443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=2.9e-27  Score=197.71  Aligned_cols=215  Identities=18%  Similarity=0.080  Sum_probs=162.1

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      .|++| ||||+      +|||+++   +.+|+++|+.|+.  |+.+              +.+....++|+++...+..+
T Consensus         1 DK~al-ITGas------~GIG~ai---A~~la~~Ga~V~i~~~~~~--------------~~~~~~~~~d~~~~~~~~~~   56 (241)
T d1uaya_           1 ERSAL-VTGGA------SGLGRAA---ALALKARGYRVVVLDLRRE--------------GEDLIYVEGDVTREEDVRRA   56 (241)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHHTCEEEEEESSCC--------------SSSSEEEECCTTCHHHHHHH
T ss_pred             CCEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECCcc--------------cccceEeeccccchhhhHHH
Confidence            47888 99999      9999999   6667788888775  4421              35778899999999999999


Q ss_pred             HHHHHHhCCCccEEEEcccccC------CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc------CCCCcEEEEEc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFG------LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG------AKLFARVVVVS  170 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~------~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~------~~~~~~iV~vs  170 (292)
                      ......... .+.++.+++...      .....+.+.|++.+++|+.+++.+++.+.+.+.+.      ..  |+||++|
T Consensus        57 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~--G~Ii~is  133 (241)
T d1uaya_          57 VARAQEEAP-LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQR--GVIVNTA  133 (241)
T ss_dssp             HHHHHHHSC-EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCS--EEEEEEC
T ss_pred             HHhhhcccc-ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCc--eeeeeec
Confidence            988877755 555566665431      23445667899999999999999999999986443      34  8999999


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccCCc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFGTP  249 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~~~  249 (292)
                      |..+..+.            +       +..+|+++|+++..|++++|.|+.++|||||+|+||+|+ ++.+.....   
T Consensus       134 S~~~~~~~------------~-------~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~---  191 (241)
T d1uaya_         134 SVAAFEGQ------------I-------GQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEK---  191 (241)
T ss_dssp             CTHHHHCC------------T-------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHH---
T ss_pred             chhhccCC------------C-------CchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhh---
Confidence            99888765            3       678999999999999999999999999999999999999 877664332   


Q ss_pred             cchhhhhhccc--cccCCHHHhhc----ccccCCCCCccc-cCCccc
Q psy4251         250 VRTFSWISRVR--PVTNFQVDLTG----TAEKVGLSGLPD-SEWMWH  289 (292)
Q Consensus       250 ~~~~~~~~~~~--~~~~~~~~~a~----~~~~~~~~G~~~-~~~~w~  289 (292)
                       .......+.+  ..+.+|+|.|.    ......++|+.+ .|.-|+
T Consensus       192 -~~~~~~~~~~~~~R~g~pedvA~~v~fL~s~~~iTG~~i~VDGG~~  237 (241)
T d1uaya_         192 -AKASLAAQVPFPPRLGRPEEYAALVLHILENPMLNGEVVRLDGALR  237 (241)
T ss_dssp             -HHHHHHTTCCSSCSCCCHHHHHHHHHHHHHCTTCCSCEEEESTTCC
T ss_pred             -HHHHHHhcCCCCCCCcCHHHHHHHHHHHHhCCCCCCCEEEECCccc
Confidence             1111111122  23568999987    112346788865 354443

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.94  E-value=1.1e-26  Score=196.40  Aligned_cols=175  Identities=12%  Similarity=0.067  Sum_probs=139.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC---HHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC---WDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      ++|++ ||||+      +|||+++|+.   |+++|+   .+++|+   .+.+++..+++.+.  +.++.+++||++|.++
T Consensus         9 ~gt~l-VTGgs------~GIG~a~a~~---la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~--g~~v~~~~~Dv~d~~~   76 (259)
T d2fr1a1           9 TGTVL-VTGGT------GGVGGQIARW---LARRGAPHLLLVSRSGPDADGAGELVAELEAL--GARTTVAACDVTDRES   76 (259)
T ss_dssp             CSEEE-EETTT------SHHHHHHHHH---HHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT--TCEEEEEECCTTCHHH
T ss_pred             cCEEE-EECCC------cHHHHHHHHH---HHHCCCCEEEEEeCCccCHHHHHHHHHHHHhc--cccccccccccchHHH
Confidence            46888 99999      9999999555   555554   333565   35567777788765  6799999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccC--CCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFG--LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRY  176 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~  176 (292)
                      ++++++++.+. +++|+||||+|+..  +..+.+.++|+.++++|+.+++++.+.+    ...+.  ++||++||.++..
T Consensus        77 ~~~~~~~i~~~-~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~----~~~~~--~~iv~~SS~a~~~  149 (259)
T d2fr1a1          77 VRELLGGIGDD-VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELT----RELDL--TAFVLFSSFASAF  149 (259)
T ss_dssp             HHHHHHTSCTT-SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHH----TTSCC--SEEEEEEEHHHHT
T ss_pred             HHHhhcccccc-ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHh----hccCC--ceEeeecchhhcc
Confidence            99999998665 58999999999874  5677889999999999999999887754    33345  8999999999888


Q ss_pred             ccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc--cccc
Q psy4251         177 SYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI--TVSK  241 (292)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~--~~~~  241 (292)
                      +.            +       +...|+++|++++.|+++++.    .|+++++|+||.+.  .|..
T Consensus       150 g~------------~-------~~~~YaAaka~l~~la~~~~~----~Gi~v~~I~pg~~~~~g~~~  193 (259)
T d2fr1a1         150 GA------------P-------GLGGYAPGNAYLDGLAQQRRS----DGLPATAVAWGTWAGSGMAE  193 (259)
T ss_dssp             CC------------T-------TCTTTHHHHHHHHHHHHHHHH----TTCCCEEEEECCBC------
T ss_pred             CC------------c-------ccHHHHHHHHhHHHHHHHHHh----CCCCEEECCCCcccCCcccc
Confidence            76            3       678899999999888776654    48999999999887  4443

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.89  E-value=1e-22  Score=171.38  Aligned_cols=220  Identities=15%  Similarity=0.073  Sum_probs=143.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |++| ||||+      +|||+++   +.+|++.|+.|+.  |+.+                +   ..+|+++.+..+...
T Consensus         2 kVvl-ITGas------~GIG~ai---A~~la~~Ga~V~~~~~~~~----------------~---~~~d~~~~~~~~~~~   52 (257)
T d1fjha_           2 SIIV-ISGCA------TGIGAAT---RKVLEAAGHQIVGIDIRDA----------------E---VIADLSTAEGRKQAI   52 (257)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSSS----------------S---EECCTTSHHHHHHHH
T ss_pred             CEEE-EeCCC------CHHHHHH---HHHHHHCCCEEEEEECChH----------------H---HHHHhcCHHHHHHHH
Confidence            5666 99999      9999999   6667788988875  4321                1   357999999988877


Q ss_pred             HHHHHhC-CCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         104 EEYQKKF-RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       104 ~~~~~~~-~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      .++..+. +.+|++|+|||+..     ..+.++....+|..+...+.+...+.+.+...  ..+.++.+...........
T Consensus        53 ~~~~~~~~~~id~lv~~Ag~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  125 (257)
T d1fjha_          53 ADVLAKCSKGMDGLVLCAGLGP-----QTKVLGNVVSVNYFGATELMDAFLPALKKGHQ--PAAVVISSVASAHLAFDKN  125 (257)
T ss_dssp             HHHHTTCTTCCSEEEECCCCCT-----TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSS--CEEEEECCGGGGSSCGGGC
T ss_pred             HHHHHHhCCCCcEEEEcCCCCC-----cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--Ccceeeeeccccchhhhhh
Confidence            6666544 57999999999753     34567888999999999999999999887765  6676666653322110000


Q ss_pred             CCCc----------cccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc-cccccccccC-Ccc
Q psy4251         183 TISK----------SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI-TVSKKWWRFG-TPV  250 (292)
Q Consensus       183 ~~~~----------~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~-~~~~~~~~~~-~~~  250 (292)
                      ....          .... .......+..+|++||+++..|++++|.|+.++|||||+|+||+|+ ++.+...... ...
T Consensus       126 ~~~~~~~~g~~~~i~s~~-~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~  204 (257)
T d1fjha_         126 PLALALEAGEEAKARAIV-EHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGE  204 (257)
T ss_dssp             TTHHHHHHTCHHHHHHHH-HTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------
T ss_pred             hhhhhccCCcEEEEeeeh-hccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHH
Confidence            0000          0000 0011122456799999999999999999999999999999999999 8877643221 111


Q ss_pred             chhhhhhccccccCCHHHhhc------ccccCCCCCccc
Q psy4251         251 RTFSWISRVRPVTNFQVDLTG------TAEKVGLSGLPD  283 (292)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~G~~~  283 (292)
                      .+.... .....+.+|+|.|.      +++...++|+.+
T Consensus       205 ~~~~~~-~PlgR~g~p~eva~~v~fL~S~~s~~itG~~i  242 (257)
T d1fjha_         205 SIAKFV-PPMGRRAEPSEMASVIAFLMSPAASYVHGAQI  242 (257)
T ss_dssp             ----CC-CSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEE
T ss_pred             HHHhcC-CCCCCCcCHHHHHHHHHHHhCchhCCccCceE
Confidence            111111 01123568999987      677778899855

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.67  E-value=3.1e-18  Score=137.35  Aligned_cols=153  Identities=8%  Similarity=-0.012  Sum_probs=110.0

Q ss_pred             CCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      ..||+||+++ ||||+      +|||+++   +..+++.|..|+  .|+.+++++..+++....   ++.+..+|+++.+
T Consensus        18 ~~~l~gK~vl-ItGas------gGIG~~i---a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~   84 (191)
T d1luaa1          18 GGSVKGKKAV-VLAGT------GPVGMRS---AALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDA   84 (191)
T ss_dssp             TSCCTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHH
T ss_pred             CCCCCCCEEE-EECCC------HHHHHHH---HHHHHhhccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHH
Confidence            3789999999 99999      9999999   555667776665  599999999999987652   5567889999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      +++++       ++++|+||||||+.  ....+.+.|+..+.+|+++.++....+.+.+....   .....+++.....+
T Consensus        85 ~~~~~-------~~~iDilin~Ag~g--~~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~  152 (191)
T d1luaa1          85 SRAEA-------VKGAHFVFTAGAIG--LELLPQAAWQNESSIEIVADYNAQPPLGIGGIDAT---DKGKEYGGKRAFGA  152 (191)
T ss_dssp             HHHHH-------TTTCSEEEECCCTT--CCCBCHHHHHTCTTCCEEEECCCSSSCSBTTCCTT---CEEEEETTEEEECH
T ss_pred             HHHHH-------hcCcCeeeecCccc--cccCCHHHHHhhhcceeehhHhhHHHHHHHhhhhc---cCcEEecceEEEec
Confidence            88765       46799999999974  34568889999999998888776544433222211   23333333322211


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHH
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGE  215 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~  215 (292)
                      ..           .       +...|+.+|.++..|++
T Consensus       153 ~~-----------~-------g~~~y~~sk~a~~~l~~  172 (191)
T d1luaa1         153 LG-----------I-------GGLKLKLHRACIAKLFE  172 (191)
T ss_dssp             HH-----------H-------HHHHHHHHHHHHHHHTS
T ss_pred             cC-----------c-------CcHHHHHHHHHHHHHHh
Confidence            10           1       44579999999887764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.9e-15  Score=132.40  Aligned_cols=179  Identities=11%  Similarity=0.001  Sum_probs=122.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-----HHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-----WDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-----~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      |.|+ |||||      +=||..+   +.+|.+.|+.|++  |.     ..+.+....+....  ..++.++++|++|.++
T Consensus         2 K~vL-ITGat------GfiGs~l---v~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~   69 (357)
T d1db3a_           2 KVAL-ITGVT------GQDGSYL---AEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTC--NPKFHLHYGDLSDTSN   69 (357)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEECC-----------------------CCEEECCCCSSCHHH
T ss_pred             CEEE-EeCCC------cHHHHHH---HHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhc--CCCeEEEEeecCCHHH
Confidence            5677 99998      6688888   6667788888875  32     23333333332222  4589999999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ++++++..     .+|+++|+|+......  +.++.+..+++|+.|+.++++++...-.+ +.  .|+|++||...+. .
T Consensus        70 ~~~~~~~~-----~~d~v~h~aa~~~~~~--~~~~~~~~~~~Nv~gt~nllea~~~~~~~-~~--~r~i~~SS~~vYG-~  138 (357)
T d1db3a_          70 LTRILREV-----QPDEVYNLGAMSHVAV--SFESPEYTADVDAMGTLRLLEAIRFLGLE-KK--TRFYQASTSELYG-L  138 (357)
T ss_dssp             HHHHHHHH-----CCSEEEECCCCCTTTT--TTSCHHHHHHHHTHHHHHHHHHHHHTTCT-TT--CEEEEEEEGGGGT-T
T ss_pred             HHHHHhcc-----CCCEEEEeecccccch--hhhCHHHHHHHHHHHHHHHHHHHHHhCCC-CC--cEEEEEEchhhhC-C
Confidence            99998876     5899999999865332  34556778999999999999887543221 22  6899999976542 2


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .....++.       .....+...|+.||.+.+.+++.+++.+   ++.+..+.|+.+-
T Consensus       139 ~~~~~~~E-------~~~~~P~~~Y~~sK~~~E~~~~~~~~~~---~l~~~ilR~~~vy  187 (357)
T d1db3a_         139 VQEIPQKE-------TTPFYPRSPYAVAKLYAYWITVNYRESY---GMYACNGILFNHE  187 (357)
T ss_dssp             CCSSSBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEE
T ss_pred             CCCCCcCC-------CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCCEEEEEecccc
Confidence            11111111       2223366789999999999999999886   4788888887766

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=4.4e-14  Score=122.59  Aligned_cols=175  Identities=13%  Similarity=0.075  Sum_probs=121.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c---CHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N---CWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r---~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .++ ||||+      +=||..+   +..|.+.|+.|++  |   .........+++.    ..++.++++|++|.+.+.+
T Consensus         2 KiL-ItG~t------GfIG~~l---~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~l~~   67 (338)
T d1udca_           2 RVL-VTGGS------GYIGSHT---CVQLLQNGHDVIILDNLCNSKRSVLPVIERLG----GKHPTFVEGDIRNEALMTE   67 (338)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH----TSCCEEEECCTTCHHHHHH
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHHCcCEEEEEECCCCcchhhHHHHHhhc----CCCCEEEEeecCCHHHHHH
Confidence            356 99999      8888888   6667788887764  2   1111112222232    4589999999999999888


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      +++..     ++|+|||.|+....  ..+.++.+..+++|+.|+..+++++...    +.  .++|++||..........
T Consensus        68 ~~~~~-----~~d~ViHlAa~~~~--~~~~~~~~~~~~~Nv~gt~nlL~~~~~~----~v--~~~i~~Ss~~vy~~~~~~  134 (338)
T d1udca_          68 ILHDH-----AIDTVIHFAGLKAV--GESVQKPLEYYDNNVNGTLRLISAMRAA----NV--KNFIFSSSATVYGDQPKI  134 (338)
T ss_dssp             HHHHT-----TCSEEEECCSCCCH--HHHHHCHHHHHHHHHHHHHHHHHHHHHH----TC--CEEEEEEEGGGGCSCCSS
T ss_pred             HHhcc-----CCCEEEECCCccch--hhHHhCHHHHHHhHHHHHHHHHHHHHHh----CC--CEEEecCcceEEcccccc
Confidence            87764     58999999996421  1133345688999999999998887643    33  689999987665433211


Q ss_pred             CCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         182 DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..       .+......+...|+.+|.+.+.+++....+..  ++.+..+.|+.|-
T Consensus       135 ~~-------~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~ilR~~~v~  181 (338)
T d1udca_         135 PY-------VESFPTGTPQSPYGKSKLMVEQILTDLQKAQP--DWSIALLRYFNPV  181 (338)
T ss_dssp             SB-------CTTSCCCCCSSHHHHHHHHHHHHHHHHHHHST--TCEEEEEEECEEE
T ss_pred             cc-------ccccccCCCcchHHHHHhhhhHHHHHHHhhcc--CCeEEEEeeccEE
Confidence            11       11122233677899999999999998887754  5777778877766

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.48  E-value=5.7e-13  Score=115.61  Aligned_cols=186  Identities=12%  Similarity=0.034  Sum_probs=126.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +||+|+ ||||+      +=||..+   +.+|.++|+.|+  +|+..+..................++..|+++.+++..
T Consensus        10 ~gk~Vl-VTG~s------GfIGs~l---~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~   79 (342)
T d1y1pa1          10 EGSLVL-VTGAN------GFVASHV---VEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE   79 (342)
T ss_dssp             TTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred             CcCEEE-EECCC------CHHHHHH---HHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhh
Confidence            489999 99998      6688888   777778898886  58887766655444333334455667899999887665


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      ++       ...|.++|+|+....     .......+.+|+.|+.++++.+...   ...  .++|++||..+.....+.
T Consensus        80 ~~-------~~~~~v~~~a~~~~~-----~~~~~~~~~~nv~gt~~ll~~~~~~---~~v--~~~i~~SS~~~~~~~~~~  142 (342)
T d1y1pa1          80 VI-------KGAAGVAHIASVVSF-----SNKYDEVVTPAIGGTLNALRAAAAT---PSV--KRFVLTSSTVSALIPKPN  142 (342)
T ss_dssp             TT-------TTCSEEEECCCCCSC-----CSCHHHHHHHHHHHHHHHHHHHHTC---TTC--CEEEEECCGGGTCCCCTT
T ss_pred             hc-------ccchhhhhhcccccc-----cccccccccchhhhHHHHHHhhhcc---ccc--ccccccccceeeccCCCC
Confidence            43       358999999986531     2234567788999988887775431   123  799999998655433221


Q ss_pred             CC-C--CccccC---------cCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         182 DT-I--SKSVLS---------VENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       182 ~~-~--~~~~~~---------~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .. .  +.+.+.         ........+...|+.+|.+.+.+++.+++... .++++.+++|+.+-
T Consensus       143 ~~~~~~~e~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-~~~~~~~i~p~~v~  209 (342)
T d1y1pa1         143 VEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENK-PHFTLNAVLPNYTI  209 (342)
T ss_dssp             CCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEEEEESEEE
T ss_pred             CCCccccccccccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhcc-cccccceeccccee
Confidence            11 1  001000         01122334677899999999999999988875 36888899998876

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=4.2e-13  Score=116.62  Aligned_cols=179  Identities=15%  Similarity=0.108  Sum_probs=119.5

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEc-----C-HHHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQN-----C-WDKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r-----~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      |+++ ||||+      +=||..+   +.+|.+.|+.|++-     + .+... ..+.+.    ..++.++++|++|.+++
T Consensus         2 K~IL-VTGat------GfIG~~l---v~~Ll~~g~~V~~~d~~~~~~~~~~~-~~~~~~----~~~v~~~~~Dl~d~~~l   66 (347)
T d1z45a2           2 KIVL-VTGGA------GYIGSHT---VVELIENGYDCVVADNLSNSTYDSVA-RLEVLT----KHHIPFYEVDLCDRKGL   66 (347)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCTHHHH-HHHHHH----TSCCCEEECCTTCHHHH
T ss_pred             CEEE-EeCCC------cHHHHHH---HHHHHHCcCeEEEEECCCCcchhHHH-hHHhhc----ccCCeEEEeecCCHHHH
Confidence            5666 99999      7777777   77788888888752     1 11111 112222    34788999999999999


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      +++++..     ++|+|||+|+......  ..+.-+....+|+.++.++++++...    ..  .++|++||...+....
T Consensus        67 ~~~~~~~-----~~d~VihlAa~~~~~~--~~~~~~~~~~~N~~~t~~ll~~~~~~----~i--~~~i~~SS~~vyg~~~  133 (347)
T d1z45a2          67 EKVFKEY-----KIDSVIHFAGLKAVGE--STQIPLRYYHNNILGTVVLLELMQQY----NV--SKFVFSSSATVYGDAT  133 (347)
T ss_dssp             HHHHHHS-----CCCEEEECCSCCCHHH--HHHSHHHHHHHHHHHHHHHHHHHHHH----TC--CEEEEEEEGGGGCCGG
T ss_pred             HHHHhcc-----CCCEEEEccccccccc--cccCcccccccchhhhHHHHHHHHhc----cc--ceEEeecceeeecCcc
Confidence            9987654     5999999999763222  22334677889999999999887542    33  6999999987664332


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..  .......  +.....+...|+.||.+.+.+++++.+... .++.+..+.|+.+-
T Consensus       134 ~~--~~~~~~~--e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-~~~~~~~lR~~~v~  186 (347)
T d1z45a2         134 RF--PNMIPIP--EECPLGPTNPYGHTKYAIENILNDLYNSDK-KSWKFAILRYFNPI  186 (347)
T ss_dssp             GS--TTCCSBC--TTSCCCCCSHHHHHHHHHHHHHHHHHHHST-TSCEEEEEEECEEE
T ss_pred             cC--CCCCccc--cccCCCCCChhHhHHHHHHHHHHHHHHhhc-cCCcEEEEeecceE
Confidence            11  0001111  122233567899999999999999886643 35777777665443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.45  E-value=1.4e-12  Score=115.18  Aligned_cols=189  Identities=9%  Similarity=-0.056  Sum_probs=123.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC--HHH----------------HHHHHHHHHhhCCCCce
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC--WDK----------------ANDAISKILTEKPSAQC   86 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~--~~~----------------~~~~~~~l~~~~~~~~~   86 (292)
                      |++++ ||||+      +=||..+   +.+|.+.|+.|++-|  ..+                ..+......... +.++
T Consensus         1 g~kIL-VTGat------GfiG~~l---v~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i   69 (393)
T d1i24a_           1 GSRVM-VIGGD------GYCGWAT---ALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSI   69 (393)
T ss_dssp             -CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCC
T ss_pred             CCEEE-EECCC------cHHHHHH---HHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhc-CCCc
Confidence            68888 99998      6688888   777888999987531  111                111112222211 4579


Q ss_pred             EEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCC-CCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcE
Q psy4251          87 IAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFAR  165 (292)
Q Consensus        87 ~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~-~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~  165 (292)
                      .++++||+|.+.++++++..     ++|+|||.|+..... ...+.+.....+.+|+.|+.++++.+...-   ..  .+
T Consensus        70 ~~~~~Dl~d~~~l~~~~~~~-----~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~---~~--~~  139 (393)
T d1i24a_          70 ELYVGDICDFEFLAESFKSF-----EPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG---EE--CH  139 (393)
T ss_dssp             EEEESCTTSHHHHHHHHHHH-----CCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC---TT--CE
T ss_pred             EEEEccCCCHHHHHHHHHhh-----cchheeccccccccccccccccccccccccccccccHHHHHHHHhc---cc--cc
Confidence            99999999999999998876     699999999876422 223445566788999999999998875432   22  46


Q ss_pred             EEEEcCcccccccCCCCCCCcc-----ccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         166 VVVVSSESHRYSYITKDTISKS-----VLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       166 iV~vsS~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      +++.||................     ....+.+....+...|+.||.+.+.+++.++++.   ++.+..+.|+.+-
T Consensus       140 ~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~---~l~~~~lR~~~v~  213 (393)
T d1i24a_         140 LVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVY  213 (393)
T ss_dssp             EEEECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEE
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccHHHHHhhhhccccccccccc---ceeeeeccccccc
Confidence            6666666544322110000000     0000011122355689999999999999988876   5888888888777

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.44  E-value=1.8e-13  Score=119.78  Aligned_cols=188  Identities=10%  Similarity=0.073  Sum_probs=124.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE-E-EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF-Y-QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v-~-~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .++ ||||+      +=||..+   +.+|...|+.+ + .++..... ..+.+.......++.++++|++|.+.+.++++
T Consensus         2 kIL-ItG~t------GfIGs~l---~~~L~~~g~~vv~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~   70 (361)
T d1kewa_           2 KIL-ITGGA------GFIGSAV---VRHIIKNTQDTVVNIDKLTYAG-NLESLSDISESNRYNFEHADICDSAEITRIFE   70 (361)
T ss_dssp             EEE-EESTT------SHHHHHH---HHHHHHHCSCEEEEEECCCTTC-CGGGGTTTTTCTTEEEEECCTTCHHHHHHHHH
T ss_pred             EEE-EECCC------cHHHHHH---HHHHHHCCCCEEEEEeCCCccc-cHHHHHhhhhcCCcEEEEccCCCHHHHHHHHH
Confidence            466 99999      7799999   55555666543 3 23211100 01112222224589999999999999998877


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhc-----CCCCcEEEEEcCcccccccC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG-----AKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~-----~~~~~~iV~vsS~~~~~~~~  179 (292)
                      ..     ++|+|||+|+......  +.++-..++++|+.|+..+.+.+.......     ..  .++|++||...+....
T Consensus        71 ~~-----~~d~VihlAa~~~~~~--~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~--~~~i~~SS~~vyg~~~  141 (361)
T d1kewa_          71 QY-----QPDAVMHLAAESHVDR--SITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNN--FRFHHISTDEVYGDLP  141 (361)
T ss_dssp             HH-----CCSEEEECCSCCCHHH--HHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHH--CEEEEEEEGGGGCCCC
T ss_pred             hC-----CCCEEEECccccchhh--HHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCc--eEEEEeccceeeCCCc
Confidence            65     5999999998653211  233456789999999999999988765421     12  5999999987664332


Q ss_pred             CCCCCC--ccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         180 TKDTIS--KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       180 ~~~~~~--~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ......  .......+.....+...|+.||.+.+.+++.+++..   |+.+.++.|+.|-
T Consensus       142 ~~~~~~~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~---~i~~~~lR~~~vy  198 (361)
T d1kewa_         142 HPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY---GLPTIVTNCSNNY  198 (361)
T ss_dssp             CGGGSCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEE
T ss_pred             cCCccccccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEecCceE
Confidence            110000  000000112223466789999999999999998876   4888899998877

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.42  E-value=3.1e-13  Score=115.93  Aligned_cols=177  Identities=14%  Similarity=-0.008  Sum_probs=119.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |+|+ ||||+      +-||..+   +..|.+.|+.|++  |....  ...+++.......++.++++|++|.+++.+++
T Consensus         1 k~vL-ItG~t------GfiG~~l---~~~Ll~~g~~V~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~   68 (321)
T d1rpna_           1 RSAL-VTGIT------GQDGAYL---AKLLLEKGYRVHGLVARRSS--DTRWRLRELGIEGDIQYEDGDMADACSVQRAV   68 (321)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCCSS--CCCHHHHHTTCGGGEEEEECCTTCHHHHHHHH
T ss_pred             CEEE-EECCC------CHHHHHH---HHHHHHCcCEEEEEECCCCc--ccHHHHHHhcccCCcEEEEccccChHHhhhhh
Confidence            5778 99999      8899999   6667788888874  43211  01122222222457999999999999998887


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      ...     ..++++++|+.....  ...+.....+.+|+.|+..+++.+...-   ..  .++++.||.. ..+......
T Consensus        69 ~~~-----~~~~~~~~a~~~~~~--~~~~~~~~~~~~n~~g~~~~l~~~~~~~---~~--~~~i~~Ss~~-~~~~~~~~~  135 (321)
T d1rpna_          69 IKA-----QPQEVYNLAAQSFVG--ASWNQPVTTGVVDGLGVTHLLEAIRQFS---PE--TRFYQASTSE-MFGLIQAER  135 (321)
T ss_dssp             HHH-----CCSEEEECCSCCCHH--HHTTSHHHHHHHHTHHHHHHHHHHHHHC---TT--SEEEEEEEGG-GGCSCSSSS
T ss_pred             ccc-----ccccccccccccccc--ccccchHHHHhhhhhchHHHHHHHHHhC---CC--cccccccchh-hcCcccCCC
Confidence            776     468888888764321  1334457889999999999888775432   12  4666666654 433322111


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .+       +.....+...|+.+|.+.+.+++.++...   ++.+..+.|+.+-
T Consensus       136 ~~-------E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lr~~~vy  179 (321)
T d1rpna_         136 QD-------ENTPFYPRSPYGVAKLYGHWITVNYRESF---GLHASSGILFNHE  179 (321)
T ss_dssp             BC-------TTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEE
T ss_pred             CC-------CCCCccccChhHHHHHHHHHHHHHHHhhc---CCcEEEEEEeccc
Confidence            11       12233467889999999999999998886   4777888887666

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.7e-13  Score=115.50  Aligned_cols=180  Identities=9%  Similarity=-0.050  Sum_probs=118.7

Q ss_pred             ceE-EEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH-----HHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          26 CLA-ILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW-----DKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        26 ~~~-vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~-----~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      |.+ + ||||+      +=||..+   +.+|.+.|+.|++  |..     .+.+......... ...++.++++|++|.+
T Consensus         1 kKI~L-VTG~t------GfIG~~l---~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~   69 (347)
T d1t2aa_           1 RNVAL-ITGIT------GQDGSYL---AEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-IEGNMKLHYGDLTDST   69 (347)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCCSSCCCTTTGGGC----------CEEEEECCTTCHH
T ss_pred             CCEEE-EecCC------cHHHHHH---HHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhh-ccCCcEEEEeecCCch
Confidence            345 6 99998      6688888   7777788988874  421     1222211111111 1347899999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .+.++++..     .++++++.|+....  ....+.....+++|+.|+.++.+++...-... .  .++|++||.+.+. 
T Consensus        70 ~~~~~~~~~-----~~~~v~~~~a~~~~--~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~-~--~~~i~~SS~~vyg-  138 (347)
T d1t2aa_          70 CLVKIINEV-----KPTEIYNLGAQSHV--KISFDLAEYTADVDGVGTLRLLDAVKTCGLIN-S--VKFYQASTSELYG-  138 (347)
T ss_dssp             HHHHHHHHH-----CCSEEEECCSCCCH--HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTT-T--CEEEEEEEGGGTC-
T ss_pred             hhHHHHhhc-----ccceeeeeeecccc--chhhccchhhhhhHHHHHHHHHHHHHHcCCCC-C--cEEEEecchheec-
Confidence            999998776     57888888876421  12334456678999999999998876543211 2  5899999976543 


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ......++.       ...+.+...|+.||.+.+.+++.+++..   ++.+..+.|+.+-
T Consensus       139 ~~~~~~~~E-------~~~~~P~~~Yg~sK~~aE~~~~~~~~~~---~~~~~ilr~~~vy  188 (347)
T d1t2aa_         139 KVQEIPQKE-------TTPFYPRSPYGAAKLYAYWIVVNFREAY---NLFAVNGILFNHE  188 (347)
T ss_dssp             SCSSSSBCT-------TSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEE
T ss_pred             CCCCCCCCC-------CCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEeccee
Confidence            211111111       2233467789999999999999988876   4777788876555

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.37  E-value=1.8e-12  Score=111.82  Aligned_cols=181  Identities=10%  Similarity=-0.024  Sum_probs=120.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-----HHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-----WDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-----~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      |+++ |||||      +=||..+   +..|.+.|+.|++  |.     .++........... ....+.++.+|+++.++
T Consensus         2 k~~L-VTGat------GfiG~~l---v~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Di~~~~~   70 (339)
T d1n7ha_           2 KIAL-ITGIT------GQDGSYL---TEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNV-NKALMKLHYADLTDASS   70 (339)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHH
T ss_pred             CEEE-EeCCc------cHHHHHH---HHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhc-cccceEEEEccccCHHH
Confidence            5677 99999      8888888   7778889999875  42     12222222111111 13578899999999999


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.+.++..     ++|+|||+|+.....  ...+.-...+.+|..+...+..++.....+... ..++++.||.. ..+.
T Consensus        71 ~~~~~~~~-----~~D~Vih~Aa~~~~~--~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~ss~~-~~~~  141 (339)
T d1n7ha_          71 LRRWIDVI-----KPDEVYNLAAQSHVA--VSFEIPDYTADVVATGALRLLEAVRSHTIDSGR-TVKYYQAGSSE-MFGS  141 (339)
T ss_dssp             HHHHHHHH-----CCSEEEECCSCCCHH--HHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCC-CCEEEEEEEGG-GGTT
T ss_pred             HHHHHhhh-----ccchhhhcccccccc--ccccCccccccccccccchhhhhhhhccccccc-ceeeeecccce-eccc
Confidence            98887764     699999999975321  123445678899999999999988765544321 03455554443 3222


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      . ....+       +.....+...|+.+|.+.+.++..+.+..   ++.+..+.|+.|-
T Consensus       142 ~-~~~~~-------E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilR~~~vy  189 (339)
T d1n7ha_         142 T-PPPQS-------ETTPFHPRSPYAASKCAAHWYTVNYREAY---GLFACNGILFNHE  189 (339)
T ss_dssp             S-CSSBC-------TTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEE
T ss_pred             C-CCCCC-------CCCCCCCcchhhHHHHHHHHHHHHHHHHh---CCCEEEEEEcccc
Confidence            1 11111       12223467889999999999999988876   5889999998776

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=4e-12  Score=108.63  Aligned_cols=164  Identities=12%  Similarity=-0.012  Sum_probs=115.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      |.++ |||||      +=||..+   +.+|.+.|..+++.+.               ..     ++|+.+.+.+.++++.
T Consensus         3 kkIl-ITG~t------GfiG~~l---~~~L~~~g~~vi~~~~---------------~~-----~~~~~~~~~~~~~~~~   52 (315)
T d1e6ua_           3 QRVF-IAGHR------GMVGSAI---RRQLEQRGDVELVLRT---------------RD-----ELNLLDSRAVHDFFAS   52 (315)
T ss_dssp             EEEE-EETTT------SHHHHHH---HHHHTTCTTEEEECCC---------------TT-----TCCTTCHHHHHHHHHH
T ss_pred             CEEE-EEcCC------cHHHHHH---HHHHHHCcCEEEEecC---------------ch-----hccccCHHHHHHHHhh
Confidence            4566 99999      9999999   7778899988876321               00     2699999998888764


Q ss_pred             HHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCC
Q psy4251         106 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS  185 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~  185 (292)
                      -     .+|.++|+|+...... ....+....+.+|+.++..+++++...    +.  .++|++||.+.+..... ..++
T Consensus        53 ~-----~~d~v~~~a~~~~~~~-~~~~~~~~~~~~Nv~gt~~ll~~a~~~----~v--~~~i~~SS~~vyg~~~~-~~~~  119 (315)
T d1e6ua_          53 E-----RIDQVYLAAAKVGGIV-ANNTYPADFIYQNMMIESNIIHAAHQN----DV--NKLLFLGSSCIYPKLAK-QPMA  119 (315)
T ss_dssp             H-----CCSEEEECCCCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHT----TC--CEEEEECCGGGSCTTCC-SSBC
T ss_pred             c-----CCCEEEEcchhccccc-cchhhHHHHHHHHHHHHHHHHHHHHHc----CC--CEEEEECCceEcCCCCC-CCcc
Confidence            3     5899999997653211 133445667889999999988876532    33  68999999876644321 1122


Q ss_pred             ccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         186 KSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       186 ~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .+...  .....++...|+.||.+.+.+++.+.++.   |+++..+.|+.|-
T Consensus       120 E~~~~--~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ilR~~~vy  166 (315)
T d1e6ua_         120 ESELL--QGTLEPTNEPYAIAKIAGIKLCESYNRQY---GRDYRSVMPTNLY  166 (315)
T ss_dssp             GGGTT--SSCCCGGGHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEE
T ss_pred             CCccc--cCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEeeccEE
Confidence            11111  11222355689999999999999998877   5899999998776

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.5e-12  Score=110.54  Aligned_cols=175  Identities=11%  Similarity=0.008  Sum_probs=117.3

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEc--------C----HHHHHHHHHHHHhhCCCCceEEEEccC
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQN--------C----WDKANDAISKILTEKPSAQCIAMELDL   93 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r--------~----~~~~~~~~~~l~~~~~~~~~~~~~~Dl   93 (292)
                      |+|+ ||||+      +=||..+   +.+|.+.|+.|++-        +    .+.. +..+.+.    ..++.++++|+
T Consensus         3 kKIL-ITG~t------GfIGs~l---v~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~Dl   67 (346)
T d1ek6a_           3 EKVL-VTGGA------GYIGSHT---VLELLEAGYLPVVIDNFHNAFRGGGSLPESL-RRVQELT----GRSVEFEEMDI   67 (346)
T ss_dssp             SEEE-EETTT------SHHHHHH---HHHHHHTTCCEEEEECSSSSCBCSSSSBHHH-HHHHHHH----TCCCEEEECCT
T ss_pred             CeEE-EECCC------cHHHHHH---HHHHHHCcCEEEEEECCCccccccccchHHH-HHHHHhc----CCCcEEEEeec
Confidence            5788 99999      8888888   66677788777641        1    1122 2222222    45889999999


Q ss_pred             CChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251          94 CRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus        94 s~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                      +|.+.+.+++..     ..+|+++|.|+......  +.++....+++|+.++..+.+++.    +.+.  .+++++||..
T Consensus        68 ~d~~~l~~~~~~-----~~~~~i~h~Aa~~~~~~--~~~~p~~~~~~Nv~gt~~l~~~~~----~~~v--~~~i~~ss~~  134 (346)
T d1ek6a_          68 LDQGALQRLFKK-----YSFMAVIHFAGLKAVGE--SVQKPLDYYRVNLTGTIQLLEIMK----AHGV--KNLVFSSSAT  134 (346)
T ss_dssp             TCHHHHHHHHHH-----CCEEEEEECCSCCCHHH--HHHCHHHHHHHHHHHHHHHHHHHH----HTTC--CEEEEEEEGG
T ss_pred             cccccccccccc-----cccccccccccccCcHh--hHhCHHHHHHhhhcccccccchhh----hcCc--ccccccccce
Confidence            999999888765     36899999999764221  233446789999999998887764    3333  6899988876


Q ss_pred             cccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         174 HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      .............++...       +...|+.+|.+.+..++.+++...  ++....+.|+.+-
T Consensus       135 ~~~~~~~~~~~~~~~~~~-------~~~~Y~~~k~~~e~~~~~~~~~~~--~~~~~~lR~~~v~  189 (346)
T d1ek6a_         135 VYGNPQYLPLDEAHPTGG-------CTNPYGKSKFFIEEMIRDLCQADK--TWNAVLLRYFNPT  189 (346)
T ss_dssp             GGCSCSSSSBCTTSCCCC-------CSSHHHHHHHHHHHHHHHHHHHCT--TCEEEEEEECEEE
T ss_pred             eeeccccccccccccccc-------cCChHHHHHHHHHHHHHHHHHhcc--CCceEEEeeccee
Confidence            664432211111111111       456799999999999888876533  5777777776554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.30  E-value=8.2e-12  Score=108.37  Aligned_cols=183  Identities=11%  Similarity=0.007  Sum_probs=123.1

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      ++||+++ ||||+      +=||..+   +..|.+.|+.|++  |+..+.....+..+ .  ...+.++.+|++|++.+.
T Consensus         6 ~~~KkIL-VTG~t------GfIGs~l---v~~Ll~~g~~V~~~~r~~~~~~~~~~~~~-~--~~~i~~~~~Dl~d~~~l~   72 (356)
T d1rkxa_           6 WQGKRVF-VTGHT------GFKGGWL---SLWLQTMGATVKGYSLTAPTVPSLFETAR-V--ADGMQSEIGDIRDQNKLL   72 (356)
T ss_dssp             HTTCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCSSSSCHHHHTT-T--TTTSEEEECCTTCHHHHH
T ss_pred             hCCCEEE-EECCC------CHHHHHH---HHHHHHCCCEEEEEECCCCccHHHHhhhh-c--ccCCeEEEeeccChHhhh
Confidence            4789999 99998      7789988   6667788888874  55433333322221 1  347999999999999998


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCC
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT  180 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~  180 (292)
                      ++.+..     .+|+++|.|+....  ..+.+..+..+.+|+.++..+++++...-   ..  ..+++.|+.........
T Consensus        73 ~~~~~~-----~~~~v~~~aa~~~~--~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~---~~--~~~~~~s~~~~~~~~~~  140 (356)
T d1rkxa_          73 ESIREF-----QPEIVFHMAAQPLV--RLSYSEPVETYSTNVMGTVYLLEAIRHVG---GV--KAVVNITSDKCYDNKEW  140 (356)
T ss_dssp             HHHHHH-----CCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHHC---CC--CEEEEECCGGGBCCCCS
T ss_pred             hhhhhc-----hhhhhhhhhccccc--cccccCCccccccccccchhhhhhhhccc---cc--ccccccccccccccccc
Confidence            887765     68999999986532  11344567789999999999888876421   22  44555444433322211


Q ss_pred             CCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC------CCeEEEEecCCccc
Q psy4251         181 KDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK------YKIALSSRHCCWKI  237 (292)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~------~gi~v~~v~PG~v~  237 (292)
                      .....       +.....+...|+.+|...+.+++.++.++..      .++.+..+.|+.+-
T Consensus       141 ~~~~~-------~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vy  196 (356)
T d1rkxa_         141 IWGYR-------ENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVI  196 (356)
T ss_dssp             SSCBC-------TTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEE
T ss_pred             ccccc-------cccccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCee
Confidence            11111       1222336678999999999999988876642      35788888888766

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.28  E-value=8.3e-12  Score=107.97  Aligned_cols=176  Identities=11%  Similarity=0.039  Sum_probs=119.3

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--c----CHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--N----CWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r----~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      -|+++ |||||      +-||..+   +.+|.+.|+.|++  |    +........ .+........+.++.+|+.|...
T Consensus        16 ~k~iL-VTG~t------GfIGs~l---v~~L~~~g~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~d~~~   84 (341)
T d1sb8a_          16 PKVWL-ITGVA------GFIGSNL---LETLLKLDQKVVGLDNFATGHQRNLDEVR-SLVSEKQWSNFKFIQGDIRNLDD   84 (341)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCHHHHHHHH-HHSCHHHHTTEEEEECCTTSHHH
T ss_pred             CCEEE-EecCC------CHHHHHH---HHHHHHCcCEEEEEECCCCcchhhHHHHH-HhhhhcccCCeeEEeeccccccc
Confidence            35777 99999      8899999   6667788888875  2    222222221 11111112478999999998876


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ....       ....+.++|.++....  ..+.++....+.+|+.|+..+++++...    +.  .++|++||...+...
T Consensus        85 ~~~~-------~~~~~~v~~~~a~~~~--~~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~--~~~i~~SS~~vyg~~  149 (341)
T d1sb8a_          85 CNNA-------CAGVDYVLHQAALGSV--PRSINDPITSNATNIDGFLNMLIAARDA----KV--QSFTYAASSSTYGDH  149 (341)
T ss_dssp             HHHH-------HTTCSEEEECCSCCCH--HHHHHCHHHHHHHHTHHHHHHHHHHHHT----TC--SEEEEEEEGGGGTTC
T ss_pred             cccc-------cccccccccccccccc--cccccCccchhheeehhHHHHHHHHHhc----CC--ceEEEcccceeeCCC
Confidence            5543       1347888888775421  1145566789999999999998887532    33  699999998765432


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                       +....+.+       ....+...|+.+|.+.+.+++.+++..   ++++..+.|+.+-
T Consensus       150 -~~~~~~E~-------~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ilR~~~v~  197 (341)
T d1sb8a_         150 -PGLPKVED-------TIGKPLSPYAVTKYVNELYADVFSRCY---GFSTIGLRYFNVF  197 (341)
T ss_dssp             -CCSSBCTT-------CCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECCEE
T ss_pred             -CCCCccCC-------CCCCCCCcchHHHHHHHHHHHHHHHHh---CCCeEEEEeceee
Confidence             21112222       223367889999999999999998876   4778888887666

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.26  E-value=4.3e-11  Score=105.06  Aligned_cols=187  Identities=8%  Similarity=-0.036  Sum_probs=119.8

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhh-cCcEEEEc-----------CHHHHHHHHHHHHhhC------CCCce
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQ-SSKLFYQN-----------CWDKANDAISKILTEK------PSAQC   86 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~-~g~~v~~r-----------~~~~~~~~~~~l~~~~------~~~~~   86 (292)
                      +..++ ||||+      +=||..+   +.+|.+ .|+.|++-           ..+..+.....+....      ....+
T Consensus         2 ~MKVL-ITG~t------GfIGs~l---v~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (383)
T d1gy8a_           2 HMRVL-VCGGA------GYIGSHF---VRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYA   71 (383)
T ss_dssp             CCEEE-EETTT------SHHHHHH---HHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCC
T ss_pred             cCEEE-EeCCC------cHHHHHH---HHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccce
Confidence            34677 99998      7788888   555543 56666541           1111222222232211      13468


Q ss_pred             EEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEE
Q psy4251          87 IAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARV  166 (292)
Q Consensus        87 ~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~i  166 (292)
                      .++.+|++|.+.++++++..    .++|+|+|.|+......  ..+.....+.+|+.++..+++++..    ...  .++
T Consensus        72 ~~~~~Di~d~~~l~~~~~~~----~~~d~ViH~Aa~~~~~~--~~~~~~~~~~~N~~~t~~~l~~~~~----~~~--~~~  139 (383)
T d1gy8a_          72 ALEVGDVRNEDFLNGVFTRH----GPIDAVVHMCAFLAVGE--SVRDPLKYYDNNVVGILRLLQAMLL----HKC--DKI  139 (383)
T ss_dssp             EEEESCTTCHHHHHHHHHHS----CCCCEEEECCCCCCHHH--HHHCHHHHHHHHHHHHHHHHHHHHH----TTC--CEE
T ss_pred             EEEECcccCHHHhhhhhhcc----ceeehhhcccccccccc--cccccccccccccccccccchhhhc----cCC--ccc
Confidence            89999999999988887654    57999999999753211  2334566788999999998887653    233  577


Q ss_pred             EEEcCcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         167 VVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       167 V~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ++++|.................... +...+.+...|+.+|.+.+.+++.+.+.+   |+.+.++.|+.+-
T Consensus       140 ~~~~s~~~~~~~~~~~~~~~~~~~~-e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---gl~~~~lR~~~vy  206 (383)
T d1gy8a_         140 IFSSSAAIFGNPTMGSVSTNAEPID-INAKKSPESPYGESKLIAERMIRDCAEAY---GIKGICLRYFNAC  206 (383)
T ss_dssp             EEEEEGGGTBSCCC-----CCCCBC-TTSCCBCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEE
T ss_pred             ccccccccccccccccccccccccc-cccCCCCCCHHHhhHhHHHHHHHHHHHHh---CCCEEEEecceee
Confidence            7777765544332211111111111 12334467889999999999999998876   5888888888776

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.24  E-value=2.4e-11  Score=104.34  Aligned_cols=170  Identities=12%  Similarity=0.049  Sum_probs=112.3

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE-cC--HHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ-NC--WDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~-r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      ++ ||||+      +=||..+   +.+|.++|+.|++ ++  .....+....+..   ..++.++.+|+++.+++.++++
T Consensus         3 IL-VTGat------GfIGs~l---v~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~   69 (338)
T d1orra_           3 LL-ITGGC------GFLGSNL---ASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLIT   69 (338)
T ss_dssp             EE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHH
T ss_pred             EE-EECCC------cHHHHHH---HHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHH
Confidence            56 99999      7788888   7778888988875 21  1111122233322   3578999999999999998887


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      ..     ++|+|||+|+.....  ...++.+..+++|+.|+.++++++...    +.  .+.|+.+|..+..........
T Consensus        70 ~~-----~~d~Vih~aa~~~~~--~~~~~~~~~~~~Nv~gt~nll~~~~~~----~~--~~~i~~sS~~~~~~~~~~~~~  136 (338)
T d1orra_          70 KY-----MPDSCFHLAGQVAMT--TSIDNPCMDFEINVGGTLNLLEAVRQY----NS--NCNIIYSSTNKVYGDLEQYKY  136 (338)
T ss_dssp             HH-----CCSEEEECCCCCCHH--HHHHCHHHHHHHHHHHHHHHHHHHHHH----CT--TCEEEEEEEGGGGTTCTTSCE
T ss_pred             hc-----CCceEEeeccccccc--ccccChHHHHHHHHHHHHHHHHhhhcc----cc--ccccccccccccccccccccc
Confidence            66     589999999876321  123345788999999999999876542    32  556666665554443321111


Q ss_pred             C-cc--------ccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcC
Q psy4251         185 S-KS--------VLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYK  223 (292)
Q Consensus       185 ~-~~--------~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~  223 (292)
                      . .+        .........+.+...|+.+|...+.+.....+.+..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~  184 (338)
T d1orra_         137 NETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGL  184 (338)
T ss_dssp             EECSSCEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccccccccCcccCCccccccccccccchhhhhhhhhhhccCc
Confidence            0 00        000112233446789999999999999998888753

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.1e-11  Score=104.23  Aligned_cols=171  Identities=8%  Similarity=-0.050  Sum_probs=112.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cC-HHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NC-WDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~-~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |.++ ||||+      +=||..+   +.+|.+.|+.|++  +. ..+.+.    +.......++.....|+.+.      
T Consensus         2 KKIl-VtG~s------GfiG~~l---v~~L~~~g~~V~~~d~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~------   61 (312)
T d2b69a1           2 KRIL-ITGGA------GFVGSHL---TDKLMMDGHEVTVVDNFFTGRKRN----VEHWIGHENFELINHDVVEP------   61 (312)
T ss_dssp             CEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEECCSSCCGGG----TGGGTTCTTEEEEECCTTSC------
T ss_pred             CEEE-EECCC------cHHHHHH---HHHHHHCcCEEEEEeCCCcCCHHH----HHHhcCCCceEEEehHHHHH------
Confidence            5677 99998      7788888   6667788888875  21 111111    11111134566666666432      


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                            .+.++|+|||+|+......  ..++.+..+++|+.++..+++++...     +  .++|++||.+.+... ...
T Consensus        62 ------~~~~~d~VihlAa~~~~~~--~~~~~~~~~~~Nv~g~~~ll~~~~~~-----~--~k~I~~SS~~vy~~~-~~~  125 (312)
T d2b69a1          62 ------LYIEVDQIYHLASPASPPN--YMYNPIKTLKTNTIGTLNMLGLAKRV-----G--ARLLLASTSEVYGDP-EVH  125 (312)
T ss_dssp             ------CCCCCSEEEECCSCCSHHH--HTTCHHHHHHHHHHHHHHHHHHHHHH-----T--CEEEEEEEGGGGBSC-SSS
T ss_pred             ------HHcCCCEEEECcccCCchh--HHhCHHHHHHHHHHHHHHHHHHHHHc-----C--CcEEEEEChheecCC-CCC
Confidence                  2346999999999754211  23455778999999999999876432     2  689999997655432 111


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ....+.+..  .....+...|+.||.+.+.+++.+++..   |+.+..+.|+.|-
T Consensus       126 ~~~e~~~~~--~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vy  175 (312)
T d2b69a1         126 PQSEDYWGH--VNPIGPRACYDEGKRVAETMCYAYMKQE---GVEVRVARIFNTF  175 (312)
T ss_dssp             SBCTTCCCB--CCSSSTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEE
T ss_pred             CCCccccCC--CCCCCCccHHHHHHHHHHHHHHHHHHHh---CCcEEEEEeeeEE
Confidence            111111111  2234467889999999999999999886   5889999999887

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9.3e-11  Score=93.96  Aligned_cols=151  Identities=10%  Similarity=-0.100  Sum_probs=100.5

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      .|+++ |||||      +.||..+   +.+|.++|+.|.  .|+.+++.+       . ....+.++++|++|.+++.++
T Consensus         3 ~kkIl-V~Gat------G~iG~~v---~~~Ll~~g~~V~~~~R~~~~~~~-------~-~~~~~~~~~gD~~d~~~l~~a   64 (205)
T d1hdoa_           3 VKKIA-IFGAT------GQTGLTT---LAQAVQAGYEVTVLVRDSSRLPS-------E-GPRPAHVVVGDVLQAADVDKT   64 (205)
T ss_dssp             CCEEE-EESTT------SHHHHHH---HHHHHHTTCEEEEEESCGGGSCS-------S-SCCCSEEEESCTTSHHHHHHH
T ss_pred             CCEEE-EECCC------CHHHHHH---HHHHHHCcCEEEEEEcChhhccc-------c-cccccccccccccchhhHHHH
Confidence            57788 99999      9999999   666667787765  488766422       1 134688999999999987766


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      ++       ..|+||+++|...+.   +..      .++..+..+    +++.+++++.  .|+|++||.......    
T Consensus        65 l~-------~~d~vi~~~g~~~~~---~~~------~~~~~~~~~----l~~aa~~~~v--~r~i~~ss~~~~~~~----  118 (205)
T d1hdoa_          65 VA-------GQDAVIVLLGTRNDL---SPT------TVMSEGARN----IVAAMKAHGV--DKVVACTSAFLLWDP----  118 (205)
T ss_dssp             HT-------TCSEEEECCCCTTCC---SCC------CHHHHHHHH----HHHHHHHHTC--CEEEEECCGGGTSCT----
T ss_pred             hc-------CCCEEEEEeccCCch---hhh------hhhHHHHHH----HHHHHHhcCC--CeEEEEeeeeccCCC----
Confidence            43       479999999875321   111      233334333    4444555555  799999987654322    


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                                 .........|...|...+.+.+       ..|+....|.||.+.
T Consensus       119 -----------~~~~~~~~~~~~~~~~~e~~l~-------~~~~~~tiirp~~~~  155 (205)
T d1hdoa_         119 -----------TKVPPRLQAVTDDHIRMHKVLR-------ESGLKYVAVMPPHIG  155 (205)
T ss_dssp             -----------TCSCGGGHHHHHHHHHHHHHHH-------HTCSEEEEECCSEEE
T ss_pred             -----------ccccccccccchHHHHHHHHHH-------hcCCceEEEecceec
Confidence                       1112245567777776654433       347999999999887

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.21  E-value=1.7e-11  Score=106.25  Aligned_cols=182  Identities=11%  Similarity=0.017  Sum_probs=115.3

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEEEcCH-HHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFYQNCW-DKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      -|.|+ |||||      +=||..+   +.+|.+.|  +.|++++. .... -...+... .+.++.++.+|+.|.+.+..
T Consensus         2 ~mkIL-VTGgt------GfIGs~l---v~~L~~~g~~v~v~~~d~~~~~~-~~~~~~~~-~~~~i~~~~~Di~d~~~~~~   69 (346)
T d1oc2a_           2 FKNII-VTGGA------GFIGSNF---VHYVYNNHPDVHVTVLDKLTYAG-NKANLEAI-LGDRVELVVGDIADAELVDK   69 (346)
T ss_dssp             CSEEE-EETTT------SHHHHHH---HHHHHHHCTTCEEEEEECCCTTC-CGGGTGGG-CSSSEEEEECCTTCHHHHHH
T ss_pred             cCEEE-EeCCC------cHHHHHH---HHHHHHCCCCeEEEEEeCCCccc-cHHHHHHh-hcCCeEEEEccCCCHHHHHH
Confidence            46788 99999      7788888   55555555  34554331 0000 00001111 14589999999999988877


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCC
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITK  181 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~  181 (292)
                      ++.       ..|.++|.|+......  ..++.+..+++|+.|+.++++.....     .  .++|++||.+.+......
T Consensus        70 ~~~-------~~~~v~~~a~~~~~~~--~~~~~~~~~~~N~~g~~nll~~~~~~-----~--~k~i~~ss~~vyg~~~~~  133 (346)
T d1oc2a_          70 LAA-------KADAIVHYAAESHNDN--SLNDPSPFIHTNFIGTYTLLEAARKY-----D--IRFHHVSTDEVYGDLPLR  133 (346)
T ss_dssp             HHT-------TCSEEEECCSCCCHHH--HHHCCHHHHHHHTHHHHHHHHHHHHH-----T--CEEEEEEEGGGGCCBCCG
T ss_pred             HHh-------hhhhhhhhhhcccccc--hhhCcccceeeehHhHHhhhhhhccc-----c--ccccccccceEecccCcc
Confidence            742       4678899888753221  22334678999999999998776433     2  688888887655322111


Q ss_pred             CCCCcccc----CcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         182 DTISKSVL----SVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       182 ~~~~~~~~----~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ........    .........+...|+.+|.+.+.+++.+.++.   |+++..+.|+.|-
T Consensus       134 ~~~~~~~~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~---~i~~~ilR~~~vy  190 (346)
T d1oc2a_         134 EDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF---GVKATISNCSNNY  190 (346)
T ss_dssp             GGSTTTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEE
T ss_pred             ccccccccCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCEEEEeeccee
Confidence            11111000    00112234456789999999999999988776   5999999998887

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=5.1e-11  Score=102.83  Aligned_cols=175  Identities=7%  Similarity=-0.128  Sum_probs=113.4

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      +++ ||||+      +=||..+   +.+|.+.| ..|++  +......       ......++.++++|+++.+++.+.+
T Consensus         2 KIL-ITG~t------GfiG~~l---~~~Ll~~g~~~V~~ld~~~~~~~-------~~~~~~~~~~i~~Di~~~~~~~~~~   64 (342)
T d2blla1           2 RVL-ILGVN------GFIGNHL---TERLLREDHYEVYGLDIGSDAIS-------RFLNHPHFHFVEGDISIHSEWIEYH   64 (342)
T ss_dssp             EEE-EETCS------SHHHHHH---HHHHHHSTTCEEEEEESCCGGGG-------GGTTCTTEEEEECCTTTCSHHHHHH
T ss_pred             EEE-EECCC------cHHHHHH---HHHHHHCCCCEEEEEeCCCcchh-------hhccCCCeEEEECccCChHHHHHHH
Confidence            356 99999      7799999   55566776 35554  3222111       1112458999999999987765543


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                      .   +   .+|+|||+|+......  ..++-...+.+|+.|+..+++.+..    . .  .+++++||............
T Consensus        65 ~---~---~~d~Vih~a~~~~~~~--~~~~~~~~~~~nv~gt~~ll~~~~~----~-~--~~~~~~ss~~~~~~~~~~~~  129 (342)
T d2blla1          65 V---K---KCDVVLPLVAIATPIE--YTRNPLRVFELDFEENLRIIRYCVK----Y-R--KRIIFPSTSEVYGMCSDKYF  129 (342)
T ss_dssp             H---H---HCSEEEECBCCCCHHH--HHHSHHHHHHHHTHHHHHHHHHHHH----T-T--CEEEEECCGGGGBTCCCSSB
T ss_pred             H---h---CCCccccccccccccc--cccCCcccccccccccccccccccc----c-c--cccccccccccccccccccc
Confidence            2   2   3899999999764221  2234467899999999999988643    2 2  57778877765554322111


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                       ..............+...|+.||.+.+.+++.+++..   |+.+..+.|..+-
T Consensus       130 -~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~i~r~~~~~  179 (342)
T d2blla1         130 -DEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWM  179 (342)
T ss_dssp             -CTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEE
T ss_pred             -ccccccccccccCCCcchhhhcccchhhhhhhhhccc---CceeEEeeccccc
Confidence             1110000011122356789999999999999999887   4778888777666

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.16  E-value=3.4e-11  Score=103.24  Aligned_cols=172  Identities=13%  Similarity=0.068  Sum_probs=116.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE------EEcC---HHHHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF------YQNC---WDKANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v------~~r~---~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .++ ||||+      +=||..+   +..|.+.|+.|      ++.+   ...-   ...+.......++.++++|+++..
T Consensus         2 kIl-ItG~t------GfIG~~l---~~~L~~~g~~v~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~~   68 (322)
T d1r6da_           2 RLL-VTGGA------GFIGSHF---VRQLLAGAYPDVPADEVIVLDSLTYAGN---RANLAPVDADPRLRFVHGDIRDAG   68 (322)
T ss_dssp             EEE-EETTT------SHHHHHH---HHHHHHTSCTTSCCSEEEEEECCCTTCC---GGGGGGGTTCTTEEEEECCTTCHH
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHHCCCCccCCceEEEEeCCCcccc---HhHhhhhhcCCCeEEEEeccccch
Confidence            366 99999      8889999   66666666533      2111   0000   011111112458999999999987


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS  177 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~  177 (292)
                      .....       ....|.+||.|+.....  ...+..+..+++|+.++..+++++..    .+.  .++|++||...+..
T Consensus        69 ~~~~~-------~~~~d~vi~~a~~~~~~--~~~~~~~~~~~~N~~gt~~ll~~~~~----~~~--~~~I~~Ss~~~yg~  133 (322)
T d1r6da_          69 LLARE-------LRGVDAIVHFAAESHVD--RSIAGASVFTETNVQGTQTLLQCAVD----AGV--GRVVHVSTNQVYGS  133 (322)
T ss_dssp             HHHHH-------TTTCCEEEECCSCCCHH--HHHHCCHHHHHHHTHHHHHHHHHHHH----TTC--CEEEEEEEGGGGCC
T ss_pred             hhhcc-------ccccceEEeeccccccc--ccccchHHHhhhhHHHHHHHHHHHHH----cCC--ceEEEeecceeecC
Confidence            65543       34689999999875321  23345577889999999999888753    234  68999999866643


Q ss_pred             cCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         178 YITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      . ....++       +.....+...|+.+|.+.+.+++.++++.   |+.+..+.|+.|-
T Consensus       134 ~-~~~~~~-------E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vy  182 (322)
T d1r6da_         134 I-DSGSWT-------ESSPLEPNSPYAASKAGSDLVARAYHRTY---GLDVRITRCCNNY  182 (322)
T ss_dssp             C-SSSCBC-------TTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEE
T ss_pred             C-CCCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEeeeEE
Confidence            3 111111       12233467789999999999999999876   5889999999887

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.14  E-value=3.7e-11  Score=104.65  Aligned_cols=180  Identities=11%  Similarity=0.004  Sum_probs=118.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      ++..++ ||||+      +=||..+   +..|.++|+.|++-+..+.+.    ....  -....+..+|+.+.+.+.+++
T Consensus        14 ~nMKIL-VTGgs------GfIGs~l---v~~L~~~g~~V~~~d~~~~~~----~~~~--~~~~~~~~~D~~~~~~~~~~~   77 (363)
T d2c5aa1          14 ENLKIS-ITGAG------GFIASHI---ARRLKHEGHYVIASDWKKNEH----MTED--MFCDEFHLVDLRVMENCLKVT   77 (363)
T ss_dssp             SCCEEE-EETTT------SHHHHHH---HHHHHHTTCEEEEEESSCCSS----SCGG--GTCSEEEECCTTSHHHHHHHH
T ss_pred             CCCEEE-EECCC------CHHHHHH---HHHHHHCcCEEEEEeCCCccc----hhhh--cccCcEEEeechhHHHHHHHh
Confidence            567788 99999      7788888   777778888887521100000    0001  124567788998887765543


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCC
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDT  183 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~  183 (292)
                             ..+|.+||.|+..... ....+.....+.+|+.++..++.++...    +.  .++|++||......... ..
T Consensus        78 -------~~~d~Vih~a~~~~~~-~~~~~~~~~~~~~n~~gt~~ll~~~~~~----~v--k~~i~~SS~~~~~~~~~-~~  142 (363)
T d2c5aa1          78 -------EGVDHVFNLAADMGGM-GFIQSNHSVIMYNNTMISFNMIEAARIN----GI--KRFFYASSACIYPEFKQ-LE  142 (363)
T ss_dssp             -------TTCSEEEECCCCCCCH-HHHTTCHHHHHHHHHHHHHHHHHHHHHT----TC--SEEEEEEEGGGSCGGGS-SS
T ss_pred             -------hcCCeEeecccccccc-cccccccccccccccchhhHHHHhHHhh----Cc--ccccccccccccccccc-cc
Confidence                   2589999999876422 1234556778889999998888876542    33  69999999766543321 11


Q ss_pred             CCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         184 ISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..-+....++.....+...|+.+|.+.+.+++.+.++.   |+.+..+.|+.+-
T Consensus       143 ~~~~~~~~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~---gl~~~ilR~~~vy  193 (363)
T d2c5aa1         143 TTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF---GIECRIGRFHNIY  193 (363)
T ss_dssp             SSSCEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEE
T ss_pred             ccccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEeeeEe
Confidence            11111111011122356789999999999999998886   5889999988877

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.87  E-value=2.7e-09  Score=86.43  Aligned_cols=159  Identities=10%  Similarity=-0.101  Sum_probs=99.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC--cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS--KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g--~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      ++|+ ||||+      +.||..+   +..|.+.|  +.|+  .|+.++...       .  ..++.++.+|+++.+++.+
T Consensus         4 ~tVl-VtGat------G~iG~~l---~~~Ll~~g~~v~v~~~~R~~~~~~~-------~--~~~~~~~~~d~~~~~~~~~   64 (252)
T d2q46a1           4 PTVL-VTGAS------GRTGQIV---YKKLKEGSDKFVAKGLVRSAQGKEK-------I--GGEADVFIGDITDADSINP   64 (252)
T ss_dssp             CEEE-EESTT------STTHHHH---HHHHHHTTTTCEEEEEESCHHHHHH-------T--TCCTTEEECCTTSHHHHHH
T ss_pred             CEEE-EECCc------cHHHHHH---HHHHHHCCCcEEEEEEcCCHHHHHh-------c--cCCcEEEEeeecccccccc
Confidence            5788 99999      9999999   55566666  3454  377755432       1  3467889999999998776


Q ss_pred             HHHHHHHhCCCccEEEEcccccCC-----------CCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGL-----------GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVS  170 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~-----------~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vs  170 (292)
                      ++       ..+|.+||+|+....           ..............+|+.+...++.......    .  +...+.+
T Consensus        65 ~~-------~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~s  131 (252)
T d2q46a1          65 AF-------QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG----V--KHIVVVG  131 (252)
T ss_dssp             HH-------TTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT----C--SEEEEEE
T ss_pred             cc-------ccceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc----c--ccccccc
Confidence            64       357999999986531           1122234466677888888888776654432    2  6777777


Q ss_pred             CcccccccCCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         171 SESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       171 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      +.....+..           +   ........|...+.+..    .+..+   .|+++..+.||.+-
T Consensus       132 ~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~ilRp~~v~  177 (252)
T d2q46a1         132 SMGGTNPDH-----------P---LNKLGNGNILVWKRKAE----QYLAD---SGTPYTIIRAGGLL  177 (252)
T ss_dssp             ETTTTCTTC-----------G---GGGGGGCCHHHHHHHHH----HHHHH---SSSCEEEEEECEEE
T ss_pred             ccccCCCCc-----------c---cccccccchhhhhhhhh----hhhhc---ccccceeecceEEE
Confidence            654443221           0   00112223333333322    22222   36899999999887

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=9.4e-10  Score=89.68  Aligned_cols=153  Identities=11%  Similarity=-0.021  Sum_probs=99.3

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC----cEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++|+++ |||||      +-||..+   +.+|.+.|    +.++.|+......      ..  ...+....+|+.+.++
T Consensus        12 m~~k~Il-ItGaT------G~iG~~l---~~~Ll~~g~~~~v~~~~R~~~~~~~------~~--~~~i~~~~~D~~~~~~   73 (232)
T d2bkaa1          12 MQNKSVF-ILGAS------GETGRVL---LKEILEQGLFSKVTLIGRRKLTFDE------EA--YKNVNQEVVDFEKLDD   73 (232)
T ss_dssp             HTCCEEE-EECTT------SHHHHHH---HHHHHHHTCCSEEEEEESSCCCCCS------GG--GGGCEEEECCGGGGGG
T ss_pred             CCCCEEE-EECCC------cHHHHHH---HHHHHhCCCCCEEEEEecChhhhcc------cc--cceeeeeeeccccccc
Confidence            3568888 99999      9999999   55555555    3334565322110      11  2366777778777655


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      +.       +.+...|++||++|...     ..........+|+.++..+++.+.    +.+.  .++|++|+...... 
T Consensus        74 ~~-------~~~~~~d~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~----~~~v--~~fi~~Ss~~~~~~-  134 (232)
T d2bkaa1          74 YA-------SAFQGHDVGFCCLGTTR-----GKAGAEGFVRVDRDYVLKSAELAK----AGGC--KHFNLLSSKGADKS-  134 (232)
T ss_dssp             GG-------GGGSSCSEEEECCCCCH-----HHHHHHHHHHHHTHHHHHHHHHHH----HTTC--CEEEEECCTTCCTT-
T ss_pred             cc-------ccccccccccccccccc-----cccchhhhhhhcccccceeeeccc----ccCc--cccccCCccccccC-
Confidence            33       33356899999998641     122345567788888888777653    3344  78999999765432 


Q ss_pred             CCCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCe-EEEEecCCccc-cc
Q psy4251         179 ITKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI-ALSSRHCCWKI-TV  239 (292)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi-~v~~v~PG~v~-~~  239 (292)
                                          ....|+.+|...+...+.       .+. ++..+.||.+- +.
T Consensus       135 --------------------~~~~Y~~~K~~~E~~l~~-------~~~~~~~IlRP~~i~G~~  170 (232)
T d2bkaa1         135 --------------------SNFLYLQVKGEVEAKVEE-------LKFDRYSVFRPGVLLCDR  170 (232)
T ss_dssp             --------------------CSSHHHHHHHHHHHHHHT-------TCCSEEEEEECCEEECTT
T ss_pred             --------------------ccchhHHHHHHhhhcccc-------ccccceEEecCceeecCC
Confidence                                335699999887755432       233 57789999998 53

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=98.76  E-value=2.7e-08  Score=83.06  Aligned_cols=140  Identities=14%  Similarity=0.013  Sum_probs=93.2

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      .++ ||||+      +=||..+   +..|...|..+......              .    -+++|++|.+.++++++..
T Consensus         2 KIL-ItG~t------GfiG~~l---~~~L~~~g~~v~~~~~~--------------~----~~~~Dl~~~~~~~~~i~~~   53 (298)
T d1n2sa_           2 NIL-LFGKT------GQVGWEL---QRSLAPVGNLIALDVHS--------------K----EFCGDFSNPKGVAETVRKL   53 (298)
T ss_dssp             EEE-EECTT------SHHHHHH---HHHTTTTSEEEEECTTC--------------S----SSCCCTTCHHHHHHHHHHH
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHhCCCEEEEECCC--------------c----cccCcCCCHHHHHHHHHHc
Confidence            356 99999      8888888   66787888766652110              0    1357999999999888776


Q ss_pred             HHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCc
Q psy4251         107 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK  186 (292)
Q Consensus       107 ~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~  186 (292)
                           ++|+|||+||.....  .+.+.-+..+.+|+.+...+.+++.    + .+  .+++++||......... .... 
T Consensus        54 -----~~D~Vih~Aa~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~----~-~~--~~~~~~ss~~~~~~~~~-~~~~-  117 (298)
T d1n2sa_          54 -----RPDVIVNAAAHTAVD--KAESEPELAQLLNATSVEAIAKAAN----E-TG--AWVVHYSTDYVFPGTGD-IPWQ-  117 (298)
T ss_dssp             -----CCSEEEECCCCCCHH--HHTTCHHHHHHHHTHHHHHHHHHHT----T-TT--CEEEEEEEGGGSCCCTT-CCBC-
T ss_pred             -----CCCEEEEeccccccc--ccccCccccccccccccccchhhhh----c-cc--cccccccccccccCCCC-CCCc-
Confidence                 589999999976322  1334446788999999888887753    2 23  68888887654433211 1111 


Q ss_pred             cccCcCCCCCChhhhHHHHhHHHHHHHHHH
Q psy4251         187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEK  216 (292)
Q Consensus       187 ~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~  216 (292)
                            +.....+...|+.+|.+.+.+.+.
T Consensus       118 ------E~~~~~p~~~y~~~k~~~e~~~~~  141 (298)
T d1n2sa_         118 ------ETDATSPLNVYGKTKLAGEKALQD  141 (298)
T ss_dssp             ------TTSCCCCSSHHHHHHHHHHHHHHH
T ss_pred             ------cccccCCCchHhhhhhhhhhhHHh
Confidence                  122233567899999888766554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.71  E-value=5.8e-08  Score=80.46  Aligned_cols=151  Identities=19%  Similarity=0.229  Sum_probs=98.4

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      .++ |||||      +-||..+   +..|...|+.|++.+..                     ++|++|.++++++++..
T Consensus         3 KIl-ItGas------GfiG~~l---~~~L~~~g~~Vi~~~r~---------------------~~D~~d~~~~~~~l~~~   51 (281)
T d1vl0a_           3 KIL-ITGAN------GQLGREI---QKQLKGKNVEVIPTDVQ---------------------DLDITNVLAVNKFFNEK   51 (281)
T ss_dssp             EEE-EESTT------SHHHHHH---HHHHTTSSEEEEEECTT---------------------TCCTTCHHHHHHHHHHH
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHhCCCEEEEeech---------------------hccCCCHHHHHHHHHHc
Confidence            356 99999      8999999   66788899999875521                     25999999999887765


Q ss_pred             HHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCCCc
Q psy4251         107 QKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK  186 (292)
Q Consensus       107 ~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~~~  186 (292)
                           ++|+|||+|+.....  ......+..+..|......+.......    .   ..+++.||....... .......
T Consensus        52 -----~~d~vih~a~~~~~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~----~---~~~~~~ss~~v~~~~-~~~~~~e  116 (281)
T d1vl0a_          52 -----KPNVVINCAAHTAVD--KCEEQYDLAYKINAIGPKNLAAAAYSV----G---AEIVQISTDYVFDGE-AKEPITE  116 (281)
T ss_dssp             -----CCSEEEECCCCCCHH--HHHHCHHHHHHHHTHHHHHHHHHHHHH----T---CEEEEEEEGGGSCSC-CSSCBCT
T ss_pred             -----CCCEEEeeccccccc--cccccchhhcccccccccccccccccc----c---ccccccccceeeecc-ccccccc
Confidence                 589999999875321  122334566777777777666655432    1   566666665443322 1111111


Q ss_pred             cccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       187 ~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                             .....+...|+.+|...+.+.+..       +.....+.|+.+-
T Consensus       117 -------~~~~~~~~~~~~~k~~~e~~~~~~-------~~~~~i~R~~~vy  153 (281)
T d1vl0a_         117 -------FDEVNPQSAYGKTKLEGENFVKAL-------NPKYYIVRTAWLY  153 (281)
T ss_dssp             -------TSCCCCCSHHHHHHHHHHHHHHHH-------CSSEEEEEECSEE
T ss_pred             -------cccccchhhhhhhhhHHHHHHHHh-------CCCccccceeEEe
Confidence                   122235678999998877665432       3556778888876

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.45  E-value=1e-07  Score=75.93  Aligned_cols=148  Identities=9%  Similarity=-0.063  Sum_probs=92.8

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      .|+++ |||||      +-||..+   +.+|.++|.  .|++.+...       + ..  ..+   +..+..|..++   
T Consensus         2 ~KkIl-ItGat------G~iG~~l---v~~L~~~~~~~~v~~~~r~~-------~-~~--~~~---~~~~~~d~~~~---   55 (212)
T d2a35a1           2 PKRVL-LAGAT------GLTGEHL---LDRILSEPTLAKVIAPARKA-------L-AE--HPR---LDNPVGPLAEL---   55 (212)
T ss_dssp             CCEEE-EECTT------SHHHHHH---HHHHHHCTTCCEEECCBSSC-------C-CC--CTT---EECCBSCHHHH---
T ss_pred             CCEEE-EECCC------cHHHHHH---HHHHHhCCCeEEEEEEeCCc-------h-hh--ccc---ccccccchhhh---
Confidence            37888 99999      9999999   666667775  455422110       0 00  123   34455554332   


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                      .   ....+.+|.+|+++|....    ....-+....+|+.++..+++.+.    +.+.  .+++++||..+...     
T Consensus        56 ~---~~~~~~~d~vi~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~a~----~~~v--~~~i~~Ss~~~~~~-----  117 (212)
T d2a35a1          56 L---PQLDGSIDTAFCCLGTTIK----EAGSEEAFRAVDFDLPLAVGKRAL----EMGA--RHYLVVSALGADAK-----  117 (212)
T ss_dssp             G---GGCCSCCSEEEECCCCCHH----HHSSHHHHHHHHTHHHHHHHHHHH----HTTC--CEEEEECCTTCCTT-----
T ss_pred             h---hccccchheeeeeeeeecc----ccccccccccchhhhhhhcccccc----cccc--cccccccccccccc-----
Confidence            1   1224578999999986521    112235677888988888887653    3344  78999998755432     


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCe-EEEEecCCccc-cc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI-ALSSRHCCWKI-TV  239 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi-~v~~v~PG~v~-~~  239 (292)
                                      ....|..+|...+...+       ..+. ++..+.|+.|- +.
T Consensus       118 ----------------~~~~y~~~K~~~E~~l~-------~~~~~~~~I~Rp~~v~G~~  153 (212)
T d2a35a1         118 ----------------SSIFYNRVKGELEQALQ-------EQGWPQLTIARPSLLFGPR  153 (212)
T ss_dssp             ----------------CSSHHHHHHHHHHHHHT-------TSCCSEEEEEECCSEESTT
T ss_pred             ----------------cccchhHHHHHHhhhcc-------ccccccceeeCCcceeCCc
Confidence                            34569999987765443       2233 57789999987 43

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=98.27  E-value=7.6e-07  Score=74.36  Aligned_cols=149  Identities=9%  Similarity=-0.063  Sum_probs=85.8

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCH-----HHHHHHHHHHHhhCCCCceEEEEccCCChHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCW-----DKANDAISKILTEKPSAQCIAMELDLCRLKSV   99 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~-----~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v   99 (292)
                      +++ |||||      +-||..+   +.+|.++|+.|++  |+.     .+.+ ....+.    ...+.++++|++|.+++
T Consensus         5 KIL-VtGat------G~iG~~l---~~~L~~~G~~V~~~~R~~~~~~~~~~~-~~~~~~----~~~v~~v~~d~~d~~~~   69 (312)
T d1qyda_           5 RVL-IVGGT------GYIGKRI---VNASISLGHPTYVLFRPEVVSNIDKVQ-MLLYFK----QLGAKLIEASLDDHQRL   69 (312)
T ss_dssp             CEE-EESTT------STTHHHH---HHHHHHTTCCEEEECCSCCSSCHHHHH-HHHHHH----TTTCEEECCCSSCHHHH
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHhCCCEEEEEECCCcccchhHHH-HHhhhc----cCCcEEEEeecccchhh
Confidence            466 99999      9999999   5556677777654  642     2221 122222    34788999999998887


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccC
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYI  179 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~  179 (292)
                      .+.++       ..+.++++++....             ..|..+...++.++    .+...  .++++.||........
T Consensus        70 ~~~~~-------~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~a----~~~~~--~~~v~~Ss~g~~~~~~  123 (312)
T d1qyda_          70 VDALK-------QVDVVISALAGGVL-------------SHHILEQLKLVEAI----KEAGN--IKRFLPSEFGMDPDIM  123 (312)
T ss_dssp             HHHHT-------TCSEEEECCCCSSS-------------STTTTTHHHHHHHH----HHSCC--CSEEECSCCSSCTTSC
T ss_pred             hhhcc-------Ccchhhhhhhhccc-------------ccchhhhhHHHHHH----HHhcC--CcEEEEeeccccCCCc
Confidence            66533       46888888775321             22333444444433    23333  6677777653332210


Q ss_pred             CCCCCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         180 TKDTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                                    .....+...|..+|.....+.+       ..++.+..+.||.+.
T Consensus       124 --------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~r~~~~~  160 (312)
T d1qyda_         124 --------------EHALQPGSITFIDKRKVRRAIE-------AASIPYTYVSSNMFA  160 (312)
T ss_dssp             --------------CCCCSSTTHHHHHHHHHHHHHH-------HTTCCBCEEECCEEH
T ss_pred             --------------ccccchhhhhhHHHHHHHHhhc-------ccccceEEeccceee
Confidence                          1111234456666655543322       225777888888776

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=4.8e-06  Score=69.11  Aligned_cols=166  Identities=10%  Similarity=0.020  Sum_probs=96.1

Q ss_pred             EEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-EEEE-cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHH
Q psy4251          29 ILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-LFYQ-NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEY  106 (292)
Q Consensus        29 vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~  106 (292)
                      ||||||+      +=||..+   +.+|.+.|. .|++ ++.....+.. .+.           ..++.+......+....
T Consensus         2 ILITGgs------GfIGs~l---v~~L~~~g~~~V~~~d~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~   60 (307)
T d1eq2a_           2 IIVTGGA------GFIGSNI---VKALNDKGITDILVVDNLKDGTKFV-NLV-----------DLNIADYMDKEDFLIQI   60 (307)
T ss_dssp             EEEETTT------SHHHHHH---HHHHHTTTCCCEEEEECCSSGGGGH-HHH-----------TSCCSEEEEHHHHHHHH
T ss_pred             EEEecCc------cHHHHHH---HHHHHhCCCCeEEEEECCCCcchhh-ccc-----------ccchhhhccchHHHHHH
Confidence            3599998      5577777   777888885 3543 3211111111 111           12333333333444444


Q ss_pred             HH--hCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCCCC
Q psy4251         107 QK--KFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTI  184 (292)
Q Consensus       107 ~~--~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~~~  184 (292)
                      ..  .+..+++++|.|+....    .....+.....|+.+...+.+.....    .   .++|+.||........ ....
T Consensus        61 ~~~~~~~~~~~i~~~aa~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~----~---i~~v~~ss~~~~~~~~-~~~~  128 (307)
T d1eq2a_          61 MAGEEFGDVEAIFHEGACSST----TEWDGKYMMDNNYQYSKELLHYCLER----E---IPFLYASSAATYGGRT-SDFI  128 (307)
T ss_dssp             HTTCCCSSCCEEEECCSCCCT----TCCCHHHHHHHTHHHHHHHHHHHHHH----T---CCEEEEEEGGGGTTCC-SCBC
T ss_pred             hhhhcccchhhhhhhcccccc----cccccccccccccccccccccccccc----c---cccccccccccccccc-cccc
Confidence            43  34578899998875432    23344566777788877776655432    2   4566666655544332 1111


Q ss_pred             CccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         185 SKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                      ..+....       +...|+.+|.+.+.+++.++++.   ++.+..+.|..+-
T Consensus       129 ~~~~~~~-------~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~~~r~~~vy  171 (307)
T d1eq2a_         129 ESREYEK-------PLNVYGYSKFLFDEYVRQILPEA---NSQIVGFRYFNVY  171 (307)
T ss_dssp             SSGGGCC-------CSSHHHHHHHHHHHHHHHHGGGC---SSCEEEEEECEEE
T ss_pred             ccccccc-------cccccccccchhhhhcccccccc---ccccccccceeEe
Confidence            2222222       66789999999999999987775   4677777777666

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.09  E-value=3.9e-10  Score=89.12  Aligned_cols=44  Identities=14%  Similarity=0.025  Sum_probs=35.6

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhC
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEK   81 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~   81 (292)
                      +. |+||+      ++||+++   +..|+..|+.|+  .|++++++++.+++....
T Consensus         3 i~-vigGa------G~iG~al---A~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~   48 (212)
T d1jaya_           3 VA-LLGGT------GNLGKGL---ALRLATLGHEIVVGSRREEKAEAKAAEYRRIA   48 (212)
T ss_dssp             EE-EETTT------SHHHHHH---HHHHHTTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EE-EEeCC------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            45 55666      8999999   666778888876  499999999999998764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=97.84  E-value=9.9e-05  Score=60.53  Aligned_cols=77  Identities=4%  Similarity=0.025  Sum_probs=51.8

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHH-----HHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDK-----ANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~-----~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      |+++ |||||      +-||..+   +.+|.++|+.|++  |+...     .......+.    ...+.++.+|+.+..+
T Consensus         4 kKIL-VtGat------G~iG~~l---~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~   69 (307)
T d1qyca_           4 SRIL-LIGAT------GYIGRHV---AKASLDLGHPTFLLVRESTASSNSEKAQLLESFK----ASGANIVHGSIDDHAS   69 (307)
T ss_dssp             CCEE-EESTT------STTHHHH---HHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH----TTTCEEECCCTTCHHH
T ss_pred             CEEE-EECCC------cHHHHHH---HHHHHHCCCeEEEEECCCccccchhHHHHHHhhc----cCCcEEEEeecccchh
Confidence            5677 99999      9999999   5556677877764  54211     111222222    3467889999999887


Q ss_pred             HHHHHHHHHHhCCCccEEEEccccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      ..+.++       ..|.+|++++..
T Consensus        70 ~~~~~~-------~~~~vi~~~~~~   87 (307)
T d1qyca_          70 LVEAVK-------NVDVVISTVGSL   87 (307)
T ss_dssp             HHHHHH-------TCSEEEECCCGG
T ss_pred             hhhhhh-------hceeeeeccccc
Confidence            666543       368889888753

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=97.79  E-value=7.6e-05  Score=63.29  Aligned_cols=148  Identities=6%  Similarity=-0.106  Sum_probs=82.2

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      -|+++ |||||      +.||..+   +.+|.++|+.|.  .|+..+..  .+++..   ...+.++++|+.|..++.+ 
T Consensus         3 kktIl-VtGat------G~iG~~l---v~~Ll~~G~~V~~l~R~~~~~~--~~~~~~---~~~v~~~~gD~~d~~~~~~-   66 (350)
T d1xgka_           3 KKTIA-VVGAT------GRQGASL---IRVAAAVGHHVRAQVHSLKGLI--AEELQA---IPNVTLFQGPLLNNVPLMD-   66 (350)
T ss_dssp             CCCEE-EESTT------SHHHHHH---HHHHHHTTCCEEEEESCSCSHH--HHHHHT---STTEEEEESCCTTCHHHHH-
T ss_pred             CCEEE-EECCC------hHHHHHH---HHHHHhCCCeEEEEECCcchhh--hhhhcc---cCCCEEEEeeCCCcHHHHH-
Confidence            46777 99999      9999999   555666776665  57754432  122322   2468899999999665322 


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcccccccCCCC
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD  182 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~~~~~  182 (292)
                        .+   +...|+++.+.....              ..|+.....++.++    .+.+.  .++|+.||.........  
T Consensus        67 --~a---~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~aa----~~agv--~~~v~~Ss~~~~~~~~~--  119 (350)
T d1xgka_          67 --TL---FEGAHLAFINTTSQA--------------GDEIAIGKDLADAA----KRAGT--IQHYIYSSMPDHSLYGP--  119 (350)
T ss_dssp             --HH---HTTCSEEEECCCSTT--------------SCHHHHHHHHHHHH----HHHSC--CSEEEEEECCCGGGTSS--
T ss_pred             --HH---hcCCceEEeeccccc--------------chhhhhhhHHHHHH----HHhCC--CceEEEeeccccccCCc--
Confidence              22   234677766543210              11223333344443    33333  57777777543322110  


Q ss_pred             CCCccccCcCCCCCChhhhHHHHhHHHHHHHHHHHHhHhcCCCeEEEEecCCccc
Q psy4251         183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKI  237 (292)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~  237 (292)
                              .       ....|..+|.....+.++       .++....+.||...
T Consensus       120 --------~-------~~~~~~~~k~~~~~~~~~-------~~~~~~~vr~~~~~  152 (350)
T d1xgka_         120 --------W-------PAVPMWAPKFTVENYVRQ-------LGLPSTFVYAGIYN  152 (350)
T ss_dssp             --------C-------CCCTTTHHHHHHHHHHHT-------SSSCEEEEEECEEG
T ss_pred             --------c-------cchhhhhhHHHHHHHHHh-------hccCceeeeeceee
Confidence                    0       223455667655544332       24667778888765

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.41  E-value=0.00021  Score=55.16  Aligned_cols=86  Identities=10%  Similarity=0.021  Sum_probs=51.1

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |.+++|++||+      +|+|.+....+..+   |+.++  +|+.++.++..+.+++.  +....+.. |-.+..+..+.
T Consensus        29 g~~vli~~ga~------g~vG~~aiqlAk~~---Ga~vI~~v~~~~~~~~~~~~~~~l--Gad~vi~~-~~~~~~~~~~~   96 (189)
T d1gu7a2          29 GKDWFIQNGGT------SAVGKYASQIGKLL---NFNSISVIRDRPNLDEVVASLKEL--GATQVITE-DQNNSREFGPT   96 (189)
T ss_dssp             TTCEEEESCTT------SHHHHHHHHHHHHH---TCEEEEEECCCTTHHHHHHHHHHH--TCSEEEEH-HHHHCGGGHHH
T ss_pred             CCEEEEEeCCC------chHHHHHHHHHhhc---CCeEEEEEecccccchHHhhhhhc--cccEEEec-cccchhHHHHH
Confidence            67777578999      99999997775544   44544  46666666666666655  33333222 21122233333


Q ss_pred             HHHHH-HhCCCccEEEEcccc
Q psy4251         103 AEEYQ-KKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~-~~~~~id~lI~nAg~  122 (292)
                      +.++. ...+.+|+++.+.|-
T Consensus        97 v~~~~~~~g~~vdvv~D~vg~  117 (189)
T d1gu7a2          97 IKEWIKQSGGEAKLALNCVGG  117 (189)
T ss_dssp             HHHHHHHHTCCEEEEEESSCH
T ss_pred             HHHHHhhccCCceEEEECCCc
Confidence            44443 344579999998773

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.00012  Score=56.36  Aligned_cols=85  Identities=15%  Similarity=0.090  Sum_probs=57.2

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHH---HHHHHHHHHHhhCCCCceEEEEccCCChH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWD---KANDAISKILTEKPSAQCIAMELDLCRLK   97 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~---~~~~~~~~l~~~~~~~~~~~~~~Dls~~~   97 (292)
                      .+++||+++ |.|+       +|.|++++..+.........|+.|+.+   ++....+++....   .......|+.+.+
T Consensus        14 ~~l~~k~vl-IlGa-------GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~   82 (182)
T d1vi2a1          14 FDIKGKTMV-LLGA-------GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENT---DCVVTVTDLADQQ   82 (182)
T ss_dssp             CCCTTCEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHS---SCEEEEEETTCHH
T ss_pred             CCcCCCEEE-EECC-------cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhc---CcceEeeeccccc
Confidence            578999999 9999       799999955555544444556668644   4555556665543   3445678888877


Q ss_pred             HHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      ++.+..       ...|++||+....
T Consensus        83 ~~~~~~-------~~~diiIN~Tp~G  101 (182)
T d1vi2a1          83 AFAEAL-------ASADILTNGTKVG  101 (182)
T ss_dssp             HHHHHH-------HTCSEEEECSSTT
T ss_pred             chhhhh-------cccceeccccCCc
Confidence            655442       2479999997653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.60  E-value=0.0015  Score=48.72  Aligned_cols=76  Identities=11%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .++++++++ |.|+       +++|..+++.+.........|+.|+.+++++..+++.     .+  ..     +.+++.
T Consensus        20 ~~l~~~~il-viGa-------G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~-----~~--~~-----~~~~~~   79 (159)
T d1gpja2          20 GSLHDKTVL-VVGA-------GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG-----GE--AV-----RFDELV   79 (159)
T ss_dssp             SCCTTCEEE-EESC-------CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT-----CE--EC-----CGGGHH
T ss_pred             CCcccCeEE-EECC-------CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh-----cc--cc-----cchhHH
Confidence            367899999 8898       7999999776555433345566699999988887762     22  21     223333


Q ss_pred             HHHHHHHHhCCCccEEEEccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      +.   +    ...|++|++.+..
T Consensus        80 ~~---l----~~~Divi~atss~   95 (159)
T d1gpja2          80 DH---L----ARSDVVVSATAAP   95 (159)
T ss_dssp             HH---H----HTCSEEEECCSSS
T ss_pred             HH---h----ccCCEEEEecCCC
Confidence            32   2    2479999998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.58  E-value=0.004  Score=46.85  Aligned_cols=77  Identities=9%  Similarity=0.072  Sum_probs=54.1

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+++||+++ |-|+       +|.+++++..+.+. .....|+.|+.+++++.++.+...   ..+..+..|-.      
T Consensus        14 ~~~~~k~vl-IlGa-------GGaarai~~aL~~~-~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~------   75 (171)
T d1p77a1          14 WLRPNQHVL-ILGA-------GGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSI------   75 (171)
T ss_dssp             CCCTTCEEE-EECC-------SHHHHTTHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGC------
T ss_pred             CCCCCCEEE-EECC-------cHHHHHHHHHHccc-CceeeeccchHHHHHHHHHHHhhc---cccchhhhccc------
Confidence            467899999 8898       79999996665542 344556679999999999988654   24555554421      


Q ss_pred             HHHHHHHHhCCCccEEEEccccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                              .....|++||+....
T Consensus        76 --------~~~~~diiIN~tp~g   90 (171)
T d1p77a1          76 --------PLQTYDLVINATSAG   90 (171)
T ss_dssp             --------CCSCCSEEEECCCC-
T ss_pred             --------cccccceeeeccccc
Confidence                    124689999997654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0036  Score=47.03  Aligned_cols=74  Identities=9%  Similarity=0.050  Sum_probs=49.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE--EEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL--FYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~--v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .+++||.++ |-|+       +|.+++++..   |...|..  |+.|+.+++++..+.+....   .+..+  +..+.  
T Consensus        14 ~~~~~k~vl-IlGa-------GGaarai~~a---l~~~g~~i~I~nRt~~ka~~l~~~~~~~~---~~~~~--~~~~~--   75 (170)
T d1nyta1          14 FIRPGLRIL-LIGA-------GGASRGVLLP---LLSLDCAVTITNRTVSRAEELAKLFAHTG---SIQAL--SMDEL--   75 (170)
T ss_dssp             CCCTTCEEE-EECC-------SHHHHHHHHH---HHHTTCEEEEECSSHHHHHHHHHHTGGGS---SEEEC--CSGGG--
T ss_pred             CCCCCCEEE-EECC-------cHHHHHHHHH---hcccceEEEeccchHHHHHHHHHHHhhcc---ccccc--ccccc--
Confidence            467899999 9998       7999999554   4444544  44599999998888776542   33332  22211  


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                                .....|++||+...
T Consensus        76 ----------~~~~~dliIN~Tp~   89 (170)
T d1nyta1          76 ----------EGHEFDLIINATSS   89 (170)
T ss_dssp             ----------TTCCCSEEEECCSC
T ss_pred             ----------cccccceeeccccc
Confidence                      12368999998644

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0089  Score=44.79  Aligned_cols=77  Identities=8%  Similarity=0.084  Sum_probs=45.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+||+      +|+|......+..   .|+.++  +++.++.+.+. ++     +..-.   .|-++.+-.++
T Consensus        28 ~g~~Vl-V~Ga~------G~vG~~aiq~a~~---~G~~vi~~~~~~~~~~~~~-~~-----Ga~~v---i~~~~~~~~~~   88 (174)
T d1yb5a2          28 AGESVL-VHGAS------GGVGLAACQIARA---YGLKILGTAGTEEGQKIVL-QN-----GAHEV---FNHREVNYIDK   88 (174)
T ss_dssp             TTCEEE-EETCS------SHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHH-HT-----TCSEE---EETTSTTHHHH
T ss_pred             CCCEEE-EEecc------ccccccccccccc---cCccccccccccccccccc-cc-----Ccccc---cccccccHHHH
Confidence            477888 99999      9999999666543   455554  46766654332 22     22222   35555543333


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.+...  ...+|+++.+.|
T Consensus        89 i~~~t~--~~g~d~v~d~~g  106 (174)
T d1yb5a2          89 IKKYVG--EKGIDIIIEMLA  106 (174)
T ss_dssp             HHHHHC--TTCEEEEEESCH
T ss_pred             hhhhhc--cCCceEEeeccc
Confidence            322221  135999999887

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.0075  Score=45.89  Aligned_cols=79  Identities=13%  Similarity=0.041  Sum_probs=46.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +++|+ |+||+      +|+|...+..+..++....+.+.++.++..+...++     +....   .|..+ ++..+.++
T Consensus        31 ~etVL-I~gaa------GgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~-----gad~v---i~~~~-~~~~~~~~   94 (187)
T d1vj1a2          31 NQTMV-VSGAA------GACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL-----GFDAA---VNYKT-GNVAEQLR   94 (187)
T ss_dssp             CCEEE-ESSTT------STTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS-----CCSEE---EETTS-SCHHHHHH
T ss_pred             CCEEE-EECCC------chhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc-----cceEE---eeccc-hhHHHHHH
Confidence            47888 99999      999999977755443332222345666655555444     22222   24443 33344444


Q ss_pred             HHHHhCCCccEEEEccc
Q psy4251         105 EYQKKFRSLNILVLNAG  121 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg  121 (292)
                      ++..  ..+|+++.+.|
T Consensus        95 ~~~~--~GvDvv~D~vG  109 (187)
T d1vj1a2          95 EACP--GGVDVYFDNVG  109 (187)
T ss_dssp             HHCT--TCEEEEEESSC
T ss_pred             HHhc--cCceEEEecCC
Confidence            4432  35999999987

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.11  E-value=0.015  Score=43.91  Aligned_cols=78  Identities=8%  Similarity=-0.015  Sum_probs=47.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+||+      +|+|.+.+..+.   ..|+.|+  +++.++.+.+.    +.  +....+   |-.+.+..+.
T Consensus        29 ~G~~Vl-V~ga~------ggvG~~aiqlak---~~Ga~vi~~~~~~~~~~~~~----~~--Ga~~vi---~~~~~~~~~~   89 (182)
T d1v3va2          29 GGETVL-VSAAA------GAVGSVVGQIAK---LKGCKVVGAAGSDEKIAYLK----QI--GFDAAF---NYKTVNSLEE   89 (182)
T ss_dssp             SSCEEE-ESSTT------SHHHHHHHHHHH---HTTCEEEEEESSHHHHHHHH----HT--TCSEEE---ETTSCSCHHH
T ss_pred             CCCEEE-EEeCC------CchhHHHHHHHH---ccCCEEEEeCCCHHHHHHHH----hh--hhhhhc---ccccccHHHH
Confidence            488999 99999      999999966655   4455665  47766644322    22  333332   3344443334


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      +.+...  ...+|+++.+.|.
T Consensus        90 ~~~~~~--~~Gvd~v~D~vG~  108 (182)
T d1v3va2          90 ALKKAS--PDGYDCYFDNVGG  108 (182)
T ss_dssp             HHHHHC--TTCEEEEEESSCH
T ss_pred             HHHHhh--cCCCceeEEecCc
Confidence            333322  2369999999883

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.019  Score=43.20  Aligned_cols=81  Identities=12%  Similarity=0.075  Sum_probs=46.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |+|+       +++|...+..+..++...+.++.+++++.+.+ +++     +.... +  |..+ ++..+..
T Consensus        28 ~G~~Vl-V~Ga-------G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~l-----Ga~~v-i--~~~~-~~~~~~~   89 (182)
T d1vj0a2          28 AGKTVV-IQGA-------GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEI-----GADLT-L--NRRE-TSVEERR   89 (182)
T ss_dssp             BTCEEE-EECC-------SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHT-----TCSEE-E--ETTT-SCHHHHH
T ss_pred             CCCEEE-EECC-------Cccchhheeccccccccccccccccccccccc-ccc-----cceEE-E--eccc-cchHHHH
Confidence            478998 8887       79999997776654332233345788777543 333     32222 2  3322 2223333


Q ss_pred             HHHHHhCC--CccEEEEcccc
Q psy4251         104 EEYQKKFR--SLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~--~id~lI~nAg~  122 (292)
                      +++.+..+  .+|++|.+.|.
T Consensus        90 ~~i~~~~~~~g~Dvvid~vG~  110 (182)
T d1vj0a2          90 KAIMDITHGRGADFILEATGD  110 (182)
T ss_dssp             HHHHHHTTTSCEEEEEECSSC
T ss_pred             HHHHHhhCCCCceEEeecCCc
Confidence            44444322  59999999884

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.01  E-value=0.086  Score=38.71  Aligned_cols=131  Identities=15%  Similarity=0.084  Sum_probs=78.4

Q ss_pred             HHHhhcccCCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc----EEEEcCHHHHHHHHHHHHhhCC-
Q psy4251           8 LKQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK----LFYQNCWDKANDAISKILTEKP-   82 (292)
Q Consensus         8 ~~~~~~~~~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~----~v~~r~~~~~~~~~~~l~~~~~-   82 (292)
                      +++.+..+...+...+..+.+. |.|+       +.+|..+|   ..+...|.    .++.+++++++..+.++..... 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~KV~-IIGa-------G~VG~~~A---~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~   71 (160)
T d1i0za1           3 LKEKLIAPVAEEEATVPNNKIT-VVGV-------GQVGMACA---ISILGKSLADELALVDVLEDKLKGEMMDLQHGSLF   71 (160)
T ss_dssp             HHHHHCCCSSCSCCCCCSSEEE-EECC-------SHHHHHHH---HHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGG
T ss_pred             hhhhhccCcCcccccCCCCeEE-EECC-------CHHHHHHH---HHHHhcCCCcEEEEEEeccchhHHHHHHHhccccc
Confidence            5677777777776667777888 7786       68999994   44555543    3344778888777777765221 


Q ss_pred             -CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCC
Q psy4251          83 -SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK  161 (292)
Q Consensus        83 -~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~  161 (292)
                       .........   +.++           ...-|++|.+||....+. .+   ....++.|    ..+++.+.+.+++..+
T Consensus        72 ~~~~~~~~~~---d~~~-----------~~~adiVVitAg~~~~~g-~t---R~~l~~~N----~~i~~~i~~~i~~~~p  129 (160)
T d1i0za1          72 LQTPKIVADK---DYSV-----------TANSKIVVVTAGVRQQEG-ES---RLNLVQRN----VNVFKFIIPQIVKYSP  129 (160)
T ss_dssp             CCCSEEEECS---SGGG-----------GTTCSEEEECCSCCCCTT-CC---GGGGHHHH----HHHHHHHHHHHHHHCT
T ss_pred             cCCCeEEecc---chhh-----------cccccEEEEecCCccccC-cc---hHHHHHHH----HHHHHHHHHHHHhcCC
Confidence             222222222   2332           134699999999753322 12   22334434    4466677777766442


Q ss_pred             CCcEEEEEcCc
Q psy4251         162 LFARVVVVSSE  172 (292)
Q Consensus       162 ~~~~iV~vsS~  172 (292)
                       ++-++++|..
T Consensus       130 -~aiiivvtNP  139 (160)
T d1i0za1         130 -DCIIIVVSNP  139 (160)
T ss_dssp             -TCEEEECSSS
T ss_pred             -CcEEEEeCCc
Confidence             1677777765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.94  E-value=0.011  Score=44.07  Aligned_cols=82  Identities=10%  Similarity=-0.008  Sum_probs=48.5

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |+|+       +++|...+..+..++ ...+++.++.++.+.+.+ +     +.... +..|-. .++.....
T Consensus        26 ~g~~vl-V~G~-------G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~-~-----ga~~~-~~~~~~-~~~~~~~~   88 (170)
T d1e3ja2          26 LGTTVL-VIGA-------GPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKN-C-----GADVT-LVVDPA-KEEESSII   88 (170)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHH-T-----TCSEE-EECCTT-TSCHHHHH
T ss_pred             CCCEEE-EEcc-------cccchhhHhhHhhhc-ccccccchHHHHHHHHHH-c-----CCcEE-Eecccc-ccccchhh
Confidence            367888 8885       799999976654432 233333578877654332 2     22222 222322 23445555


Q ss_pred             HHHHHhCC-CccEEEEcccc
Q psy4251         104 EEYQKKFR-SLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~-~id~lI~nAg~  122 (292)
                      +++....+ .+|++|.++|.
T Consensus        89 ~~~~~~~g~g~D~vid~~g~  108 (170)
T d1e3ja2          89 ERIRSAIGDLPNVTIDCSGN  108 (170)
T ss_dssp             HHHHHHSSSCCSEEEECSCC
T ss_pred             hhhhcccccCCceeeecCCC
Confidence            66665554 68999999984

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.67  E-value=0.017  Score=43.43  Aligned_cols=77  Identities=8%  Similarity=0.001  Sum_probs=45.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |+||+      +|+|..++..+..+ .....+++++.++.+.    +++.  +....   .|-.+.+-    .
T Consensus        25 ~g~~Vl-I~ga~------g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~----l~~~--Ga~~v---i~~~~~~~----~   83 (183)
T d1pqwa_          25 PGERVL-IHSAT------GGVGMAAVSIAKMI-GARIYTTAGSDAKREM----LSRL--GVEYV---GDSRSVDF----A   83 (183)
T ss_dssp             TTCEEE-ETTTT------SHHHHHHHHHHHHH-TCEEEEEESSHHHHHH----HHTT--CCSEE---EETTCSTH----H
T ss_pred             CCCEEE-EECCC------CCcccccchhhccc-cccceeeecccccccc----cccc--ccccc---ccCCccCH----H
Confidence            377888 99999      99999997776544 2233333567666533    3333  32322   24444332    2


Q ss_pred             HHHHHhC--CCccEEEEccc
Q psy4251         104 EEYQKKF--RSLNILVLNAG  121 (292)
Q Consensus       104 ~~~~~~~--~~id~lI~nAg  121 (292)
                      +++++..  ..+|+++.+.|
T Consensus        84 ~~v~~~t~~~g~d~v~d~~g  103 (183)
T d1pqwa_          84 DEILELTDGYGVDVVLNSLA  103 (183)
T ss_dssp             HHHHHHTTTCCEEEEEECCC
T ss_pred             HHHHHHhCCCCEEEEEeccc
Confidence            3333322  36999999887

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.027  Score=42.06  Aligned_cols=78  Identities=12%  Similarity=0.063  Sum_probs=47.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+||+      +|+|...+..+..   .|+.|+  .++.++.+.+. ++     +....   +|-++++-.++
T Consensus        28 ~g~~Vl-v~ga~------g~vG~~~iqlak~---~Ga~Vi~~~~s~~k~~~~~-~l-----Ga~~v---i~~~~~d~~~~   88 (179)
T d1qora2          28 PDEQFL-FHAAA------GGVGLIACQWAKA---LGAKLIGTVGTAQKAQSAL-KA-----GAWQV---INYREEDLVER   88 (179)
T ss_dssp             TTCEEE-ESSTT------BHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHH-HH-----TCSEE---EETTTSCHHHH
T ss_pred             CCCEEE-EEccc------cccchHHHHHHHH---hCCeEeecccchHHHHHHH-hc-----CCeEE---EECCCCCHHHH
Confidence            377888 99998      9999999766553   445554  47777765433 33     32222   35555433333


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                      + .++- ....+|+++.+.|.
T Consensus        89 v-~~~t-~g~g~d~v~d~~g~  107 (179)
T d1qora2          89 L-KEIT-GGKKVRVVYDSVGR  107 (179)
T ss_dssp             H-HHHT-TTCCEEEEEECSCG
T ss_pred             H-HHHh-CCCCeEEEEeCccH
Confidence            2 2221 12368999998874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.054  Score=40.09  Aligned_cols=81  Identities=9%  Similarity=0.035  Sum_probs=47.0

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      |.+++ |.|+       +++|...+..+..+.....+++.+++++++-+ +++     +... ++..+-.+..+..+.++
T Consensus        27 gd~Vl-I~G~-------G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a-~~~-----Ga~~-~~~~~~~~~~~~~~~~~   91 (171)
T d1pl8a2          27 GHKVL-VCGA-------GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEI-----GADL-VLQISKESPQEIARKVE   91 (171)
T ss_dssp             TCEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT-----TCSE-EEECSSCCHHHHHHHHH
T ss_pred             CCEEE-EECC-------CccHHHHHHHHHHcCCceEEeccCCHHHHHHH-HHh-----CCcc-ccccccccccccccccc
Confidence            66788 8887       79999997665544333334445787777643 233     2222 23333334444444433


Q ss_pred             HHHHhCCCccEEEEcccc
Q psy4251         105 EYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~  122 (292)
                      ...  ...+|++|.+.|.
T Consensus        92 ~~~--g~g~Dvvid~~G~  107 (171)
T d1pl8a2          92 GQL--GCKPEVTIECTGA  107 (171)
T ss_dssp             HHH--TSCCSEEEECSCC
T ss_pred             ccC--CCCceEEEeccCC
Confidence            322  2369999999984

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.94  E-value=0.02  Score=43.74  Aligned_cols=81  Identities=10%  Similarity=-0.066  Sum_probs=45.2

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |.|+       +++|...+..+..+.....+++.+++++++.+. ++     +....    +....+++.+-+
T Consensus        25 ~G~tVl-V~Ga-------G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~-~~-----Ga~~~----~~~~~~~~~~~i   86 (195)
T d1kola2          25 PGSTVY-VAGA-------GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQ-----GFEIA----DLSLDTPLHEQI   86 (195)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT-----TCEEE----ETTSSSCHHHHH
T ss_pred             CCCEEE-EECc-------CHHHHHHHHHHHhhcccceeeecccchhhHhhh-hc-----cccEE----EeCCCcCHHHHH
Confidence            477888 8887       799988866655443333333347777765433 22     22221    222223333333


Q ss_pred             HHHHHhCCCccEEEEccccc
Q psy4251         104 EEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~  123 (292)
                      .++- .....|++|.+.|..
T Consensus        87 ~~~t-~g~g~D~vid~vG~~  105 (195)
T d1kola2          87 AALL-GEPEVDCAVDAVGFE  105 (195)
T ss_dssp             HHHH-SSSCEEEEEECCCTT
T ss_pred             HHHh-CCCCcEEEEECcccc
Confidence            3332 223699999999853

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.89  E-value=0.36  Score=34.65  Aligned_cols=120  Identities=11%  Similarity=0.005  Sum_probs=66.7

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhc-CcEEEEcCHHHHHHHHHHHHhhCC--CCceEEEEccCCChHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQS-SKLFYQNCWDKANDAISKILTEKP--SAQCIAMELDLCRLKSV   99 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~-g~~v~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v   99 (292)
                      -.++.+. |.|+       +.+|..+|..+....-. ...++.+++++++..+.+|.+...  ...+.+...|.   +. 
T Consensus         4 ~~~~KI~-IiGa-------G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~---~~-   71 (148)
T d1ldna1           4 NGGARVV-VIGA-------GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY---DD-   71 (148)
T ss_dssp             TTSCEEE-EECC-------SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG---GG-
T ss_pred             CCCCeEE-EECc-------CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH---HH-
Confidence            3466777 7787       68999995544332111 133344778888877778865432  22333333332   21 


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                                ...-|++|.+||....+.+ +.   ...+..|    .-+++.+.+.+.+..+ .+.++++|...
T Consensus        72 ----------l~daDvvvitag~~~~~~~-~R---~dl~~~N----~~i~~~i~~~i~~~~p-~a~~ivvtNPv  126 (148)
T d1ldna1          72 ----------CRDADLVVICAGANQKPGE-TR---LDLVDKN----IAIFRSIVESVMASGF-QGLFLVATNPV  126 (148)
T ss_dssp             ----------TTTCSEEEECCSCCCCTTT-CS---GGGHHHH----HHHHHHHHHHHHHHTC-CSEEEECSSSH
T ss_pred             ----------hccceeEEEecccccccCc-ch---hHHHHHH----HHHHHHHHHHHHhhCC-CceEEEecCcc
Confidence                      2346999999997643322 22   2233334    3455556666555432 17777776643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.88  E-value=0.047  Score=40.34  Aligned_cols=81  Identities=6%  Similarity=0.010  Sum_probs=46.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |.|++      +++|..++..+.........++.+++++.+.+. ++     +... ++  |-++.+..++..
T Consensus        27 ~g~~vl-V~G~~------G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~-----Ga~~-~i--~~~~~~~~~~~~   90 (170)
T d1jvba2          27 PTKTLL-VVGAG------GGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RA-----GADY-VI--NASMQDPLAEIR   90 (170)
T ss_dssp             TTCEEE-EETTT------SHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HH-----TCSE-EE--ETTTSCHHHHHH
T ss_pred             CCCEEE-EEecc------ccceeeeeecccccccccccccccchhhHHHHH-Hc-----CCce-ee--ccCCcCHHHHHH
Confidence            367888 99998      999999966655443333333446776654433 23     3332 22  334433333333


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      +...  .+.+|++|.++|.
T Consensus        91 ~~~~--~~~~d~vid~~g~  107 (170)
T d1jvba2          91 RITE--SKGVDAVIDLNNS  107 (170)
T ss_dssp             HHTT--TSCEEEEEESCCC
T ss_pred             HHhh--cccchhhhccccc
Confidence            2221  1359999999884

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.79  E-value=0.024  Score=42.53  Aligned_cols=50  Identities=14%  Similarity=0.206  Sum_probs=38.9

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcE-EEEcCHHHHHHHHHHHHhhC
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKL-FYQNCWDKANDAISKILTEK   81 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~-v~~r~~~~~~~~~~~l~~~~   81 (292)
                      .+++||+++ |-|+       +|.++++   +..|.+.|.+ |+.|+.+++++..+++....
T Consensus        14 ~~~~~k~vl-IlGa-------GG~arai---~~aL~~~~~i~I~nR~~~ka~~l~~~~~~~~   64 (177)
T d1nvta1          14 GRVKDKNIV-IYGA-------GGAARAV---AFELAKDNNIIIANRTVEKAEALAKEIAEKL   64 (177)
T ss_dssp             CCCCSCEEE-EECC-------SHHHHHH---HHHHTSSSEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCcCCCEEE-EECC-------cHHHHHH---HHHHccccceeeehhhhhHHHHHHHHHHHhh
Confidence            457899999 8898       6889988   5666666633 33599999999999887654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.73  E-value=0.12  Score=37.52  Aligned_cols=116  Identities=14%  Similarity=0.037  Sum_probs=64.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---------EEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---------LFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---------~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      .+. |+||+      +.+|..+   +..+...+.         .++.  ++.++++....++..... .....+...-.+
T Consensus         6 KV~-IiGA~------G~VG~~~---a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   74 (154)
T d1y7ta1           6 RVA-VTGAA------GQIGYSL---LFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDP   74 (154)
T ss_dssp             EEE-ESSTT------SHHHHHH---HHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCH
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-ccccccccCCch
Confidence            577 99999      9999999   544544332         2221  556777777776665432 233333332222


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      .+           ....-|++|.+||....+.+ +   .+..+..|    ..+.+.+.+.+.+..++.+.|+.+|..
T Consensus        75 ~~-----------~~~~advViitaG~~~~pg~-~---r~dl~~~N----~~i~~~~~~~i~k~a~~~~~vivvsNP  132 (154)
T d1y7ta1          75 KV-----------AFKDADYALLVGAAPRKAGM-E---RRDLLQVN----GKIFTEQGRALAEVAKKDVKVLVVGNP  132 (154)
T ss_dssp             HH-----------HTTTCSEEEECCCCCCCTTC-C---HHHHHHHH----HHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             hh-----------hcccccEEEeecCcCCCCCC-c---HHHHHHHH----HHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence            11           13468999999998532221 2   23334434    445566666666532211566666653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.66  E-value=0.02  Score=42.93  Aligned_cols=80  Identities=8%  Similarity=-0.120  Sum_probs=45.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |.|+       +|+|...+..+..++...+.++.+++++.+.+ +++     +... +  +|..+.+..+++ 
T Consensus        27 ~g~~Vl-I~Ga-------G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a-~~l-----Ga~~-~--i~~~~~~~~~~v-   88 (174)
T d1jqba2          27 MGSSVV-VIGI-------GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA-KFY-----GATD-I--LNYKNGHIEDQV-   88 (174)
T ss_dssp             TTCCEE-EECC-------SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH-HHH-----TCSE-E--ECGGGSCHHHHH-
T ss_pred             CCCEEE-EEcC-------CcchhhhhhhhhcccccccccccchhhhHHHH-Hhh-----Cccc-c--ccccchhHHHHH-
Confidence            377888 7887       79999997776644333344445777775544 334     3222 2  244333322222 


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      .++-. ...+|++|.++|.
T Consensus        89 ~~~t~-g~G~D~vid~~g~  106 (174)
T d1jqba2          89 MKLTN-GKGVDRVIMAGGG  106 (174)
T ss_dssp             HHHTT-TSCEEEEEECSSC
T ss_pred             HHHhh-ccCcceEEEccCC
Confidence            22211 1249999999984

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.62  E-value=0.24  Score=35.55  Aligned_cols=121  Identities=8%  Similarity=-0.013  Sum_probs=65.4

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-cEEEEcCHHHHHHHHHHHHhhCC--CCceEEEEccCCChHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-KLFYQNCWDKANDAISKILTEKP--SAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-~~v~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~  102 (292)
                      |++. |.|+       +.+|..+|..+....-.. ..++..++++++....++.+..+  .........   +.+++   
T Consensus         2 kKI~-IIGa-------G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~---d~~~l---   67 (146)
T d1hyha1           2 RKIG-IIGL-------GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN---DWAAL---   67 (146)
T ss_dssp             CEEE-EECC-------SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEES---CGGGG---
T ss_pred             CeEE-EECc-------CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceecc---CHHHh---
Confidence            5667 6786       789999965544332222 33344788888877777765432  223333332   33221   


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                              ..-|++|.+||...+..+...+.....+..|    .-+++.+.+.+.+..+ .+.++++|...
T Consensus        68 --------~~adiVVitaG~~~~~~~~~g~~R~~l~~~N----~~i~~~i~~~i~~~~p-~aivivvtNPv  125 (146)
T d1hyha1          68 --------ADADVVISTLGNIKLQQDNPTGDRFAELKFT----SSMVQSVGTNLKESGF-HGVLVVISNPV  125 (146)
T ss_dssp             --------TTCSEEEECCSCGGGTC-------CTTHHHH----HHHHHHHHHHHHHTTC-CSEEEECSSSH
T ss_pred             --------ccccEEEEeccccccccccCCccHHHHHHHH----HHHHHHHHHHHhhcCC-CeEEEEecCcH
Confidence                    3469999999975422211111122233444    3566777777766543 16777766643

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.47  E-value=0.028  Score=42.22  Aligned_cols=104  Identities=8%  Similarity=-0.072  Sum_probs=56.9

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |+||+      +|.|......+.   ..|+.|+  +++.++.+.+ +++     +....+   |=.+  ...+
T Consensus        31 ~g~~VL-I~gaa------GGVG~~aiQlak---~~Ga~Viat~~s~~k~~~~-~~l-----Ga~~vi---~~~~--~~~~   89 (176)
T d1xa0a2          31 ERGPVL-VTGAT------GGVGSLAVSMLA---KRGYTVEASTGKAAEHDYL-RVL-----GAKEVL---ARED--VMAE   89 (176)
T ss_dssp             GGCCEE-ESSTT------SHHHHHHHHHHH---HTTCCEEEEESCTTCHHHH-HHT-----TCSEEE---ECC-------
T ss_pred             CCCEEE-EEecc------chHHHHHHHHHH---HcCCceEEecCchHHHHHH-Hhc-----ccceee---ecch--hHHH
Confidence            478899 99999      999999955544   4466555  4666554332 222     333322   2111  1122


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCccccccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY  178 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~~~~~~  178 (292)
                      ..+.+  ..+.+|+++.+.|-..         +               ...+..|+.  .  ||||.++........
T Consensus        90 ~~~~~--~~~gvD~vid~vgg~~---------~---------------~~~l~~l~~--~--Griv~~G~~~g~~~~  136 (176)
T d1xa0a2          90 RIRPL--DKQRWAAAVDPVGGRT---------L---------------ATVLSRMRY--G--GAVAVSGLTGGAEVP  136 (176)
T ss_dssp             ----C--CSCCEEEEEECSTTTT---------H---------------HHHHHTEEE--E--EEEEECSCCSSSCCC
T ss_pred             HHHHh--hccCcCEEEEcCCchh---------H---------------HHHHHHhCC--C--ceEEEeecccCcccC
Confidence            22211  2247999999988421         1               222333332  3  999999987655443

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.41  E-value=0.053  Score=39.99  Aligned_cols=72  Identities=8%  Similarity=0.020  Sum_probs=46.5

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +|.++ |-||       +.+|..+   +..|...|+.|+  .|+.+++++..+++      ........+..+.......
T Consensus         2 ~K~Il-iiGa-------G~~G~~~---a~~L~~~g~~V~v~dr~~~~a~~l~~~~------~~~~~~~~~~~~~~~~~~~   64 (182)
T d1e5qa1           2 TKSVL-MLGS-------GFVTRPT---LDVLTDSGIKVTVACRTLESAKKLSAGV------QHSTPISLDVNDDAALDAE   64 (182)
T ss_dssp             CCEEE-EECC-------STTHHHH---HHHHHTTTCEEEEEESCHHHHHHHHTTC------TTEEEEECCTTCHHHHHHH
T ss_pred             CCEEE-EECC-------CHHHHHH---HHHHHhCCCEEEEEECChHHHHHHHhcc------cccccccccccchhhhHhh
Confidence            67888 7788       7999999   556777777665  49999888766533      2344455566665554444


Q ss_pred             HHHHHHhCCCccEEEEcc
Q psy4251         103 AEEYQKKFRSLNILVLNA  120 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nA  120 (292)
                      +       ...|.+|...
T Consensus        65 i-------~~~~~~i~~~   75 (182)
T d1e5qa1          65 V-------AKHDLVISLI   75 (182)
T ss_dssp             H-------TTSSEEEECS
T ss_pred             h-------hccceeEeec
Confidence            2       2346666543

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.034  Score=43.42  Aligned_cols=84  Identities=6%  Similarity=-0.067  Sum_probs=47.2

Q ss_pred             CCCCCceEEEEcCC-C-------CCCC--CcccchhhHHHHHHHHhhcCcEEEE-cCHHHHHHHHHHHHhhCCCCceEEE
Q psy4251          21 STYNGCLAILCTGD-M-------EFYP--RYTGLKKKDGNLCFDLVQSSKLFYQ-NCWDKANDAISKILTEKPSAQCIAM   89 (292)
Q Consensus        21 ~~l~g~~~vlItGa-~-------~~~~--~~~GiG~~~a~~~~~l~~~g~~v~~-r~~~~~~~~~~~l~~~~~~~~~~~~   89 (292)
                      .||+|++++ ||+| |       |+++  -++-+|+++   +.++..+|+.|.. ....          ...+...+..+
T Consensus         2 ~dl~g~~vl-ITaG~T~E~ID~VR~ItN~SSGk~G~ai---A~~~~~~Ga~V~li~g~~----------~~~~p~~~~~~   67 (223)
T d1u7za_           2 NDLKHLNIM-ITAGPTREPLDPVRYISDHSSGKMGFAI---AAAAARRGANVTLVSGPV----------SLPTPPFVKRV   67 (223)
T ss_dssp             CTTTTCEEE-EEESBCEEESSSSEEEEECCCSHHHHHH---HHHHHHTTCEEEEEECSC----------CCCCCTTEEEE
T ss_pred             cccCCCEEE-EECCCCcccCCCcceeccCCcHHHHHHH---HHHHHHcCCchhhhhccc----------ccCcccccccc
Confidence            589999999 7754 3       2222  235689999   5555566766653 1110          00111234433


Q ss_pred             EccCCChHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          90 ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        90 ~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      .  +.+.++....   +.+....-|++|++|++.
T Consensus        68 ~--~~t~~~m~~~---~~~~~~~~D~~i~aAAvs   96 (223)
T d1u7za_          68 D--VMTALEMEAA---VNASVQQQNIFIGCAAVA   96 (223)
T ss_dssp             E--CCSHHHHHHH---HHHHGGGCSEEEECCBCC
T ss_pred             e--ehhhHHHHHH---HHhhhccceeEeeeechh
Confidence            3  3444444444   434445679999999985

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.16  E-value=0.39  Score=34.94  Aligned_cols=129  Identities=15%  Similarity=0.170  Sum_probs=70.6

Q ss_pred             HHhhcccCCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc----EEEEcCHHHHHHHHHHHHhhCC--
Q psy4251           9 KQHLLNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK----LFYQNCWDKANDAISKILTEKP--   82 (292)
Q Consensus         9 ~~~~~~~~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~----~v~~r~~~~~~~~~~~l~~~~~--   82 (292)
                      ++++.... .+...++...+. |.|+       +.+|..+|.   .+...+.    .++.++.++++..+.+|.....  
T Consensus         4 ~~~l~~~~-~~~~~~~~~KI~-IIGa-------G~VG~~~A~---~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~   71 (159)
T d2ldxa1           4 KEQLIQNL-VPEDKLSRCKIT-VVGV-------GDVGMACAI---SILLKGLADELALVDADTDKLRGEALDLQHGSLFL   71 (159)
T ss_dssp             HHHHEEEC-SSCCCCCCCEEE-EECC-------SHHHHHHHH---HHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHhhh-cccccCCCCeEE-EECC-------CHHHHHHHH---HHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhc
Confidence            44444333 333444445566 6686       789999954   4445543    3344778888888888876432  


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCC
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKL  162 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~  162 (292)
                      +........|   .+.           ...-|++|.+||....+.+ +..+   .++.|    ..+.+...+.+.+..+ 
T Consensus        72 ~~~~~~~~~d---~~~-----------~~~adivvitag~~~~~~~-~R~d---ll~~N----~~i~~~i~~~i~~~~p-  128 (159)
T d2ldxa1          72 STPKIVFGKD---YNV-----------SANSKLVIITAGARMVSGQ-TRLD---LLQRN----VAIMKAIVPGVIQNSP-  128 (159)
T ss_dssp             SCCEEEEESS---GGG-----------GTTEEEEEECCSCCCCTTT-CSSC---TTHHH----HHHHHHHTTTHHHHST-
T ss_pred             CCCeEEeccc---hhh-----------hccccEEEEecccccCCCC-CHHH---HHHHH----HHHHHHHHHHHhccCC-
Confidence            1122222223   221           2357999999998643332 2222   23333    3345566666655442 


Q ss_pred             CcEEEEEcCc
Q psy4251         163 FARVVVVSSE  172 (292)
Q Consensus       163 ~~~iV~vsS~  172 (292)
                      .+.++++|..
T Consensus       129 ~~ivivvtNP  138 (159)
T d2ldxa1         129 DCKIIVVTNP  138 (159)
T ss_dssp             TCEEEECSSS
T ss_pred             CeEEEEeCCc
Confidence            1777777764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.14  E-value=0.059  Score=38.04  Aligned_cols=69  Identities=12%  Similarity=0.107  Sum_probs=46.7

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .++ |.|+       +-+|..+   +..|...|+.|+  ..|+++.+++.+++       .+.++..|.++++..+++  
T Consensus         2 ~Iv-I~G~-------G~~G~~l---a~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~--   61 (132)
T d1lssa_           2 YII-IAGI-------GRVGYTL---AKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDA--   61 (132)
T ss_dssp             EEE-EECC-------SHHHHHH---HHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHT--
T ss_pred             EEE-EECC-------CHHHHHH---HHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhc--
Confidence            355 8887       6899999   555666776655  47888777654432       456789999998876655  


Q ss_pred             HHHHhCCCccEEEEc
Q psy4251         105 EYQKKFRSLNILVLN  119 (292)
Q Consensus       105 ~~~~~~~~id~lI~n  119 (292)
                          .....|.+|..
T Consensus        62 ----~i~~a~~vv~~   72 (132)
T d1lssa_          62 ----GIEDADMYIAV   72 (132)
T ss_dssp             ----TTTTCSEEEEC
T ss_pred             ----Chhhhhhhccc
Confidence                12356777764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.03  E-value=0.12  Score=38.21  Aligned_cols=79  Identities=9%  Similarity=-0.082  Sum_probs=46.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |.|+       +|+|...+..+..+....+.++.+++++++.+. ++     +.. .++  |..+ +++.+.+
T Consensus        28 ~g~~Vl-I~G~-------G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~-----Ga~-~~i--~~~~-~~~~~~i   89 (174)
T d1f8fa2          28 PASSFV-TWGA-------GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QL-----GAT-HVI--NSKT-QDPVAAI   89 (174)
T ss_dssp             TTCEEE-EESC-------SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HH-----TCS-EEE--ETTT-SCHHHHH
T ss_pred             CCCEEE-EeCC-------CHHHhhhhhcccccccceeeeeccHHHHHHHHH-Hc-----CCe-EEE--eCCC-cCHHHHH
Confidence            377888 8887       799999977766554433333446776665543 33     221 222  4444 2333333


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      .++-  .+.+|++|.+.|.
T Consensus        90 ~~~t--~gg~D~vid~~G~  106 (174)
T d1f8fa2          90 KEIT--DGGVNFALESTGS  106 (174)
T ss_dssp             HHHT--TSCEEEEEECSCC
T ss_pred             HHHc--CCCCcEEEEcCCc
Confidence            3332  2479999999984

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.90  E-value=0.19  Score=36.07  Aligned_cols=114  Identities=15%  Similarity=0.112  Sum_probs=58.5

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc----EEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK----LFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~----~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~  102 (292)
                      ++. |.||+      +.+|..+|.   .+...+.    .++..+..+  ..+.++....   .......-+ ...+..+.
T Consensus         2 Kv~-IiGA~------G~VG~~~A~---~l~~~~~~~elvLiDi~~~~--~~a~Dl~~~~---~~~~~~~~~-~~~~~~~~   65 (144)
T d1mlda1           2 KVA-VLGAS------GGIGQPLSL---LLKNSPLVSRLTLYDIAHTP--GVAADLSHIE---TRATVKGYL-GPEQLPDC   65 (144)
T ss_dssp             EEE-EETTT------STTHHHHHH---HHHTCTTCSEEEEEESSSHH--HHHHHHTTSS---SSCEEEEEE-SGGGHHHH
T ss_pred             eEE-EECCC------ChHHHHHHH---HHHhCCccceEEEEeccccc--hhhHHHhhhh---hhcCCCeEE-cCCChHHH
Confidence            356 88988      899999954   4444443    333444433  3334454321   111111112 12222221


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcC-CCCcEEEEEcCcc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA-KLFARVVVVSSES  173 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~-~~~~~iV~vsS~~  173 (292)
                         +    ..-|++|..||....+.+ +   ....++.|..-.    +...+.+.+.. .  +.|+++|...
T Consensus        66 ---~----~~aDivVitag~~~~~g~-s---R~~ll~~N~~i~----~~i~~~i~~~~p~--~iiivvtNPv  120 (144)
T d1mlda1          66 ---L----KGCDVVVIPAGVPRKPGM-T---RDDLFNTNATIV----ATLTAACAQHCPD--AMICIISNPV  120 (144)
T ss_dssp             ---H----TTCSEEEECCSCCCCTTC-C---GGGGHHHHHHHH----HHHHHHHHHHCTT--SEEEECSSCH
T ss_pred             ---h----CCCCEEEECCCcCCCCCC-C---cchHHHHHHHHH----HHHHHHHHhcCCC--eEEEEecCch
Confidence               2    357999999997533222 2   234455565444    44555554443 4  7888777754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.87  E-value=0.043  Score=40.68  Aligned_cols=46  Identities=11%  Similarity=-0.001  Sum_probs=33.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKI   77 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l   77 (292)
                      +++.++ |-|+       +|.+++++..+.++......|+.|+.+++++..+.+
T Consensus        16 ~~~~vl-IlGa-------GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~   61 (167)
T d1npya1          16 KNAKVI-VHGS-------GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY   61 (167)
T ss_dssp             TTSCEE-EECS-------STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEE-EECC-------CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence            467788 8888       799999955555443344556679999988877655

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.83  E-value=0.36  Score=34.84  Aligned_cols=116  Identities=14%  Similarity=0.086  Sum_probs=60.5

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc-------EEEE----cCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK-------LFYQ----NCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~-------~v~~----r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      .+. |+||+      +.+|..+   +..|+..+.       .+..    ++.++++....++..... .....+.  .++
T Consensus         5 KV~-IiGA~------G~VG~~l---a~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~-~~~~~~~--~~~   71 (154)
T d5mdha1           5 RVL-VTGAA------GQIAYSL---LYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-PLLKDVI--ATD   71 (154)
T ss_dssp             EEE-ESSTT------SHHHHTT---HHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-TTEEEEE--EES
T ss_pred             EEE-EECCC------CHHHHHH---HHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccc-ccccccc--cCc
Confidence            577 99999      9999999   444543321       2332    345666666666554321 1222111  111


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ...         +.....|++|.+||....+.+...+    .+..|    ..+.+.+.+.+.+..++.+.|+.+|..
T Consensus        72 ~~~---------~~~~~~dvVVitag~~~~~g~sr~d----ll~~N----~~i~k~~~~~i~k~a~~~~~iivvsNP  131 (154)
T d5mdha1          72 KEE---------IAFKDLDVAILVGSMPRRDGMERKD----LLKAN----VKIFKCQGAALDKYAKKSVKVIVVGNP  131 (154)
T ss_dssp             CHH---------HHTTTCSEEEECCSCCCCTTCCTTT----THHHH----HHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             ccc---------cccCCceEEEEecccCCCCCCchhH----HHHHh----HHHHHHHHHHHHhhCCCceEEEEecCc
Confidence            111         1124689999999986543332222    23333    345566666665533211455666543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.82  E-value=0.11  Score=38.44  Aligned_cols=78  Identities=19%  Similarity=0.119  Sum_probs=44.1

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      |.+++ |.|+       +|+|...+..+..+......++.+++++++.+.+ +     +.. .++  |-+ .+.++...+
T Consensus        33 g~~vl-i~Ga-------G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-~-----ga~-~~i--~~~-~~~~~~~~~   94 (172)
T d1h2ba2          33 GAYVA-IVGV-------GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-L-----GAD-HVV--DAR-RDPVKQVME   94 (172)
T ss_dssp             TCEEE-EECC-------SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-T-----TCS-EEE--ETT-SCHHHHHHH
T ss_pred             CCEEE-EeCC-------ChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-c-----ccc-eee--cCc-ccHHHHHHH
Confidence            67888 8887       7999998776655543333334577776554332 2     222 222  222 233334333


Q ss_pred             HHHHhCCCccEEEEcccc
Q psy4251         105 EYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~  122 (292)
                      ...  ...+|++|.++|.
T Consensus        95 ~~~--~~g~d~vid~~g~  110 (172)
T d1h2ba2          95 LTR--GRGVNVAMDFVGS  110 (172)
T ss_dssp             HTT--TCCEEEEEESSCC
T ss_pred             hhC--CCCceEEEEecCc
Confidence            221  1359999999984

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=93.73  E-value=0.45  Score=34.03  Aligned_cols=114  Identities=9%  Similarity=0.045  Sum_probs=60.6

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC----cEEEEcCHHHHHHHHHHHHhhCC-CCceEEEEccCCChHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLFYQNCWDKANDAISKILTEKP-SAQCIAMELDLCRLKSV   99 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v   99 (292)
                      .+++. |.|+       +.+|..+|..   ++..+    ..++.+++++++....++..... .........|.   ++ 
T Consensus         5 ~~KI~-IIGa-------G~VG~~~A~~---l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~~-   69 (146)
T d1ez4a1           5 HQKVV-LVGD-------GAVGSSYAFA---MAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---SD-   69 (146)
T ss_dssp             BCEEE-EECC-------SHHHHHHHHH---HHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---GG-
T ss_pred             CCEEE-EECC-------CHHHHHHHHH---HHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---HH-
Confidence            45666 6686       6899999554   44443    34445788888777777765321 22233344442   21 


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                                ...-|++|.+||....+.+ +   -...+..|.    -+++.+.+.+.+..+ ++.++++|..
T Consensus        70 ----------~~~adivvitag~~~~~g~-~---r~~l~~~N~----~i~~~~~~~i~~~~p-~aivivvtNP  123 (146)
T d1ez4a1          70 ----------CKDADLVVITAGAPQKPGE-S---RLDLVNKNL----NILSSIVKPVVDSGF-DGIFLVAANP  123 (146)
T ss_dssp             ----------GTTCSEEEECCCC--------------CHHHHH----HHHHHHHHHHHHTTC-CSEEEECSSS
T ss_pred             ----------hccccEEEEecccccCCCC-C---HHHHHHHHH----HHHHHHHHHHhhcCC-CcEEEEeCCc
Confidence                      2356999999997533221 1   223344443    455666666655543 1666665543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.63  E-value=0.065  Score=39.74  Aligned_cols=72  Identities=13%  Similarity=0.105  Sum_probs=42.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|++++ |+||+      +++|...+..+.   ..|+.|+  .++.++.+.+. ++     +....+   |..   +.  
T Consensus        27 ~g~~Vl-I~ga~------G~vG~~aiqlak---~~G~~vi~~~~~~~~~~~~~-~l-----Ga~~~i---~~~---~~--   82 (171)
T d1iz0a2          27 PGEKVL-VQAAA------GALGTAAVQVAR---AMGLRVLAAASRPEKLALPL-AL-----GAEEAA---TYA---EV--   82 (171)
T ss_dssp             TTCEEE-ESSTT------BHHHHHHHHHHH---HTTCEEEEEESSGGGSHHHH-HT-----TCSEEE---EGG---GH--
T ss_pred             CCCEEE-EEecc------ccchhhhhhhhc---cccccccccccccccccccc-cc-----ccceee---ehh---hh--
Confidence            478888 99999      999999966544   3455555  46665554332 22     322222   222   21  


Q ss_pred             HHHHHHHhCCCccEEEEccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg  121 (292)
                       .+++.. ...+|+++.+.|
T Consensus        83 -~~~~~~-~~g~D~v~d~~G  100 (171)
T d1iz0a2          83 -PERAKA-WGGLDLVLEVRG  100 (171)
T ss_dssp             -HHHHHH-TTSEEEEEECSC
T ss_pred             -hhhhhc-cccccccccccc
Confidence             122222 346999999776

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.57  E-value=0.92  Score=33.39  Aligned_cols=117  Identities=10%  Similarity=-0.047  Sum_probs=63.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcC-------cEEEE----cCHHHHHHHHHHHHhhCCCCceEEEEccCC
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS-------KLFYQ----NCWDKANDAISKILTEKPSAQCIAMELDLC   94 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g-------~~v~~----r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls   94 (292)
                      ..+. ||||+      ++||..+   +..|+...       ..+..    ...+.++...-++.+......-.....  +
T Consensus        25 ~kV~-I~GA~------G~Ig~~l---~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~--~   92 (175)
T d7mdha1          25 VNIA-VSGAA------GMISNHL---LFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--I   92 (175)
T ss_dssp             EEEE-EETTT------SHHHHHH---HHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--S
T ss_pred             cEEE-EECCC------cHHHHHH---HHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccc--c
Confidence            3577 99999      9999999   55454321       23332    235566666666655422111111111  1


Q ss_pred             ChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251          95 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus        95 ~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      +..          +.+...|++|..||....+.    +..+..++.|    ..+.+.+.+.+.+..++..+|+.+|..
T Consensus        93 ~~~----------~~~~~aDvVvi~ag~~rkpg----~tR~Dll~~N----~~I~k~~~~~i~~~a~~~~~vlvv~NP  152 (175)
T d7mdha1          93 DPY----------EVFEDVDWALLIGAKPRGPG----MERAALLDIN----GQIFADQGKALNAVASKNVKVLVVGNP  152 (175)
T ss_dssp             CHH----------HHTTTCSEEEECCCCCCCTT----CCHHHHHHHH----HHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             cch----------hhccCCceEEEeeccCCCCC----CcHHHHHHHH----HHHHHHHHHHHHhhCCCCcEEEEecCc
Confidence            211          22356899999999853222    2234455555    445566666666632211566666653

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.032  Score=35.64  Aligned_cols=39  Identities=10%  Similarity=-0.017  Sum_probs=27.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKAND   72 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~   72 (292)
                      +|.+++ |+||+      +|+|......+.   ..|+.|+  .++.++.+-
T Consensus        31 ~~~~vl-I~gas------GgVG~~aiQlak---~~G~~Vi~~t~s~~k~~~   71 (77)
T d1o8ca2          31 QDGEIV-VTGAS------GGVGSTAVALLH---KLGYQVVAVSGRESTHEY   71 (77)
T ss_dssp             GGCEEE-ESSTT------SHHHHHHHHHHH---HTTCCEEEEESCGGGHHH
T ss_pred             CCCcEE-EEeCC------CcHHHHHHHHHH---HcCCeEEEEECCHHHHHH
Confidence            467888 99999      999999955544   3466665  366655543

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.21  E-value=0.37  Score=34.48  Aligned_cols=111  Identities=9%  Similarity=0.072  Sum_probs=60.2

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcC----cEEEEcC--HHHHHHHHHHHHhhCC----CCceEEEEccCCChH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSS----KLFYQNC--WDKANDAISKILTEKP----SAQCIAMELDLCRLK   97 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g----~~v~~r~--~~~~~~~~~~l~~~~~----~~~~~~~~~Dls~~~   97 (292)
                      +. |.||+      +.+|..+|.   .+..++    ..++.++  .++++..+.++....+    ..++.....+  +.+
T Consensus         3 V~-IiGA~------G~VG~~~a~---~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~--d~~   70 (145)
T d1hyea1           3 VT-IIGAS------GRVGSATAL---LLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDE--NLR   70 (145)
T ss_dssp             EE-EETTT------SHHHHHHHH---HHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETT--CGG
T ss_pred             EE-EECCC------ChHHHHHHH---HHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcc--hHH
Confidence            55 88988      899999944   444444    2333443  4566666666664221    2233333322  222


Q ss_pred             HHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcC
Q psy4251          98 SVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS  171 (292)
Q Consensus        98 ~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS  171 (292)
                      .           ...-|++|.+||....+.+    .-...+..|.    -+++.+.+.+.+..+  ..|+.||.
T Consensus        71 ~-----------l~~aDvVVitAG~~~~~g~----sR~dl~~~Na----~iv~~i~~~i~~~~~--~~iivVtN  123 (145)
T d1hyea1          71 I-----------IDESDVVIITSGVPRKEGM----SRMDLAKTNA----KIVGKYAKKIAEICD--TKIFVITN  123 (145)
T ss_dssp             G-----------GTTCSEEEECCSCCCCTTC----CHHHHHHHHH----HHHHHHHHHHHHHCC--CEEEECSS
T ss_pred             H-----------hccceEEEEecccccCCCC----ChhhhhhhhH----HHHHHHHHHHhccCC--CeEEEEcC
Confidence            1           2357999999997532221    2334455554    345666666655554  55665543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.67  E-value=0.085  Score=39.30  Aligned_cols=80  Identities=13%  Similarity=-0.028  Sum_probs=44.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH-HHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKS-VKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~-v~~~  102 (292)
                      .|.+++ |.|+       +|+|...+..+..++...++++.++.++++- +.++     +....+   |-.+.+. .+.+
T Consensus        29 ~g~tVl-I~G~-------GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~-Ak~~-----GA~~~i---n~~~~~~~~~~~   91 (176)
T d1d1ta2          29 PGSTCV-VFGL-------GGVGLSVIMGCKSAGASRIIGIDLNKDKFEK-AMAV-----GATECI---SPKDSTKPISEV   91 (176)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHH-----TCSEEE---CGGGCSSCHHHH
T ss_pred             CCCEEE-EECC-------CchhHHHHHHHHHcCCceEEEecCcHHHHHH-HHhc-----CCcEEE---CccccchHHHHH
Confidence            478888 8897       7999999665543332333334467777653 3334     333332   2222222 2233


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+...  ...+|++|.+.|.
T Consensus        92 ~~~~~--g~G~d~vi~~~g~  109 (176)
T d1d1ta2          92 LSEMT--GNNVGYTFEVIGH  109 (176)
T ss_dssp             HHHHH--TSCCCEEEECSCC
T ss_pred             HHHhc--cccceEEEEeCCc
Confidence            22222  2369999999885

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.35  E-value=0.36  Score=34.90  Aligned_cols=125  Identities=9%  Similarity=0.034  Sum_probs=62.0

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCC--CCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKP--SAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~  101 (292)
                      +-+++. |.|+       +.+|..+|..+....-....++..++++++..+.++....+  +........  ++.+   +
T Consensus         6 k~~KI~-IIGa-------G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~~~---~   72 (154)
T d1pzga1           6 RRKKVA-MIGS-------GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE--YSYE---A   72 (154)
T ss_dssp             CCCEEE-EECC-------SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE--CSHH---H
T ss_pred             CCCcEE-EECC-------CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc--Cchh---h
Confidence            345666 6687       68998886543322212233333566666666666654211  111111111  1111   1


Q ss_pred             HHHHHHHhCCCccEEEEcccccCCCCCCCC-cchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTE-DGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~~~~~~~~~~-~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                         .+    ..-|++|.+||....+.+.+. ......+..|    .-+++.+.+.+.+..+ .+.++++|...
T Consensus        73 ---~~----~~adiVvitag~~~~~g~~~~~~tR~~l~~~n----~~iv~~i~~~i~~~~p-~aiviivsNPv  133 (154)
T d1pzga1          73 ---AL----TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFN----SKIIREIGQNIKKYCP-KTFIIVVTNPL  133 (154)
T ss_dssp             ---HH----TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHH----HHHHHHHHHHHHHHCT-TCEEEECCSSH
T ss_pred             ---hh----cCCCeEEEecccccCCCCCCcccchhhhhhhh----HHHHHHHHHHHHhcCC-CcEEEEeCCcH
Confidence               11    257999999998743332111 1223334444    3445556666555443 16777776653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.02  E-value=0.085  Score=41.54  Aligned_cols=83  Identities=8%  Similarity=-0.005  Sum_probs=54.7

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC-------------------HHHHHHHHHHHHhhCC
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC-------------------WDKANDAISKILTEKP   82 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~-------------------~~~~~~~~~~l~~~~~   82 (292)
                      .|++++|+ |-|+       +|+|-.++..+...+-...+++..+                   ..|.+.+.+++.+..|
T Consensus        27 kL~~~~Vl-iiG~-------GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np   98 (247)
T d1jw9b_          27 ALKDSRVL-IVGL-------GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINP   98 (247)
T ss_dssp             HHHHCEEE-EECC-------SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCT
T ss_pred             HHhCCCEE-EECC-------CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhc
Confidence            47788999 9998       7999999555444433334444221                   3488888999999988


Q ss_pred             CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      ..++..+...+++... ...   +    ...|++|.+.
T Consensus        99 ~~~i~~~~~~~~~~~~-~~~---~----~~~divid~~  128 (247)
T d1jw9b_          99 HIAITPVNALLDDAEL-AAL---I----AEHDLVLDCT  128 (247)
T ss_dssp             TSEEEEECSCCCHHHH-HHH---H----HTSSEEEECC
T ss_pred             ccchhhhhhhhhhccc-ccc---c----cccceeeecc
Confidence            8888877666654332 222   1    2468888654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.86  E-value=0.075  Score=39.45  Aligned_cols=81  Identities=15%  Similarity=0.012  Sum_probs=45.3

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |.|+       +|+|...+..+..+....++++.+++++.+.+.+ +     +....+...|  ..+.+.+..
T Consensus        28 ~GdtVl-V~Ga-------GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~-~-----Ga~~~i~~~~--~~~~~~~~~   91 (176)
T d2jhfa2          28 QGSTCA-VFGL-------GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-V-----GATECVNPQD--YKKPIQEVL   91 (176)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-T-----TCSEEECGGG--CSSCHHHHH
T ss_pred             CCCEEE-EECC-------CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH-h-----CCeeEEecCC--chhHHHHHH
Confidence            478888 9999       6889888666554433333333477777554322 2     2222221112  123344444


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      +...  .+.+|++|.+.|.
T Consensus        92 ~~~~--~~G~D~vid~~G~  108 (176)
T d2jhfa2          92 TEMS--NGGVDFSFEVIGR  108 (176)
T ss_dssp             HHHT--TSCBSEEEECSCC
T ss_pred             HHHh--cCCCCEEEecCCc
Confidence            4442  2469999999985

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.62  E-value=0.22  Score=36.82  Aligned_cols=81  Identities=14%  Similarity=-0.034  Sum_probs=44.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |.|+       +|||...+..+..+....+.++.+++++++ .++++     +... ++... ...+.+....
T Consensus        28 ~G~~Vl-V~G~-------G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~-~a~~~-----Ga~~-~i~~~-~~~~~~~~~~   91 (174)
T d1e3ia2          28 PGSTCA-VFGL-------GCVGLSAIIGCKIAGASRIIAIDINGEKFP-KAKAL-----GATD-CLNPR-ELDKPVQDVI   91 (174)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEECSCGGGHH-HHHHT-----TCSE-EECGG-GCSSCHHHHH
T ss_pred             CCCEEE-EECC-------ChHHHHHHHHHHHhCCceeeeeccchHHHH-HHHHh-----CCCc-ccCCc-cchhhhhhhH
Confidence            477888 8887       799999966655443333333346666643 33333     2222 22211 1122334444


Q ss_pred             HHHHHhCCCccEEEEcccc
Q psy4251         104 EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~  122 (292)
                      +...  .+.+|++|.++|.
T Consensus        92 ~~~~--~~G~d~vie~~G~  108 (174)
T d1e3ia2          92 TELT--AGGVDYSLDCAGT  108 (174)
T ss_dssp             HHHH--TSCBSEEEESSCC
T ss_pred             hhhh--cCCCcEEEEeccc
Confidence            4432  3479999999995

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.14  E-value=0.15  Score=37.61  Aligned_cols=80  Identities=14%  Similarity=-0.035  Sum_probs=44.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCC-ChHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLC-RLKSVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls-~~~~v~~~  102 (292)
                      .|.+++ |.|+       +|+|...+..+..+....++++.+++++. +.++++     +.... +  |.. +.+.+.+.
T Consensus        28 ~G~tVl-I~Ga-------GGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak~l-----Ga~~~-i--~~~~~~~~~~~~   90 (176)
T d2fzwa2          28 PGSVCA-VFGL-------GGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEF-----GATEC-I--NPQDFSKPIQEV   90 (176)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHH-----TCSEE-E--CGGGCSSCHHHH
T ss_pred             CCCEEE-Eecc-------hhHHHHHHHHHHHHhcCceEEEcccHHHH-HHHHHh-----CCcEE-E--eCCchhhHHHHH
Confidence            477888 8898       68999996665544333333333555554 344444     32222 2  222 22334444


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      .++..  .+.+|++|.+.|.
T Consensus        91 ~~~~~--~~g~D~vid~~G~  108 (176)
T d2fzwa2          91 LIEMT--DGGVDYSFECIGN  108 (176)
T ss_dssp             HHHHT--TSCBSEEEECSCC
T ss_pred             HHHHc--CCCCcEeeecCCC
Confidence            44442  2369999999884

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.04  E-value=0.26  Score=35.42  Aligned_cols=74  Identities=14%  Similarity=0.048  Sum_probs=48.9

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      ++| |.|.       +-+|..+   +..|...|..+  +..++++..+..++...    ..+.++.+|.++++-.+++  
T Consensus         5 HiI-I~G~-------g~~g~~l---~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a--   67 (153)
T d1id1a_           5 HFI-VCGH-------SILAINT---ILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKA--   67 (153)
T ss_dssp             CEE-EECC-------SHHHHHH---HHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHH--
T ss_pred             EEE-EECC-------CHHHHHH---HHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHh--
Confidence            466 7887       6889999   44455555544  44777766666666553    3678899999998766554  


Q ss_pred             HHHHhCCCccEEEEccc
Q psy4251         105 EYQKKFRSLNILVLNAG  121 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg  121 (292)
                          ...+.|.+|...+
T Consensus        68 ----~i~~a~~vi~~~~   80 (153)
T d1id1a_          68 ----GIDRCRAILALSD   80 (153)
T ss_dssp             ----TTTTCSEEEECSS
T ss_pred             ----ccccCCEEEEccc
Confidence                1235677776543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.81  E-value=0.099  Score=36.63  Aligned_cols=70  Identities=13%  Similarity=0.061  Sum_probs=47.7

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      |++| |-|.       +.+|..+   +.+|.+.+..|+..++++.+..    ...    .+.++.+|.++++..+++   
T Consensus         1 kHiv-I~G~-------g~~g~~l---~~~L~~~~i~vi~~d~~~~~~~----~~~----~~~~i~Gd~~~~~~L~~a---   58 (129)
T d2fy8a1           1 RHVV-ICGW-------SESTLEC---LRELRGSEVFVLAEDENVRKKV----LRS----GANFVHGDPTRVSDLEKA---   58 (129)
T ss_dssp             CCEE-EESC-------CHHHHHH---HHTSCGGGEEEEESCTTHHHHH----HHT----TCEEEESCTTSHHHHHHT---
T ss_pred             CEEE-EECC-------CHHHHHH---HHHHcCCCCEEEEcchHHHHHH----Hhc----CccccccccCCHHHHHHh---
Confidence            5677 7787       6889999   5666677777777777765543    222    567888999998776654   


Q ss_pred             HHHhCCCccEEEEcc
Q psy4251         106 YQKKFRSLNILVLNA  120 (292)
Q Consensus       106 ~~~~~~~id~lI~nA  120 (292)
                         ...+-+.+|...
T Consensus        59 ---~i~~A~~vi~~~   70 (129)
T d2fy8a1          59 ---NVRGARAVIVNL   70 (129)
T ss_dssp             ---TCTTCSEEEECC
T ss_pred             ---hhhcCcEEEEec
Confidence               223567777643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.74  E-value=1.7  Score=30.82  Aligned_cols=117  Identities=12%  Similarity=0.063  Sum_probs=60.0

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEE  105 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~  105 (292)
                      +. |+|++      +.+|..+|..+.........+  +... +.++..+.++........... ..+-.+.+.+      
T Consensus         3 V~-IiGaa------G~VG~~~a~~l~~~~~~~~el~L~D~~-~~~~g~a~Dl~h~~~~~~~~~-~~~~~~~~~~------   67 (145)
T d2cmda1           3 VA-VLGAA------GGIGQALALLLKTQLPSGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKG-FSGEDATPAL------   67 (145)
T ss_dssp             EE-EETTT------SHHHHHHHHHHHHHSCTTCEEEEECSS-TTHHHHHHHHHTSCSSCEEEE-ECSSCCHHHH------
T ss_pred             EE-EEcCC------ChHHHHHHHHHHhCCCCCcEEEEeccc-ccchhHHHHHHCCccccCCcE-EEcCCCcccc------
Confidence            55 88987      899999965433221222333  3333 334444556665422222222 2222233221      


Q ss_pred             HHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         106 YQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       106 ~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                           ..-|++|.+||....+.+    .....++.|.-    +.+...+.+.+..+ .+.|+++|...
T Consensus        68 -----~~aDvvvitaG~~~k~g~----~R~dl~~~N~~----i~~~v~~~i~~~~p-~aivivvtNPv  121 (145)
T d2cmda1          68 -----EGADVVLISAGVRRKPGM----DRSDLFNVNAG----IVKNLVQQVAKTCP-KACIGIITNPV  121 (145)
T ss_dssp             -----TTCSEEEECCSCCCCTTC----CGGGGHHHHHH----HHHHHHHHHHHHCT-TSEEEECSSSH
T ss_pred             -----CCCCEEEECCCccCCCCc----chhhHHHHHHH----HHHHHHHHHHhhCC-CcEEEEccCCc
Confidence                 246999999998633222    23344555643    44555555554432 16777777754

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.71  E-value=0.093  Score=35.93  Aligned_cols=33  Identities=6%  Similarity=0.066  Sum_probs=24.7

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ   64 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~   64 (292)
                      .+++||+++ |.|+       +.+|..-   +..|.+.|+.|++
T Consensus         8 l~l~~k~vl-VvG~-------G~va~~k---a~~ll~~ga~v~v   40 (113)
T d1pjqa1           8 CQLRDRDCL-IVGG-------GDVAERK---ARLLLEAGARLTV   40 (113)
T ss_dssp             ECCBTCEEE-EECC-------SHHHHHH---HHHHHHTTBEEEE
T ss_pred             EEeCCCEEE-EECC-------CHHHHHH---HHHHHHCCCeEEE
Confidence            478999999 8888       4566666   6667777877765

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.46  E-value=0.07  Score=45.82  Aligned_cols=78  Identities=18%  Similarity=0.213  Sum_probs=52.4

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc---EEEEcC-------------------HHHHHHHHHHHHhh
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK---LFYQNC-------------------WDKANDAISKILTE   80 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~---~v~~r~-------------------~~~~~~~~~~l~~~   80 (292)
                      |++..|+ |.|+       +|+|-++   +..|+..|+   +|+..+                   ..|++.+++.+++.
T Consensus        35 l~~~kVl-vvG~-------GglG~ei---~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~  103 (426)
T d1yovb1          35 LDTCKVL-VIGA-------GGLGCEL---LKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDR  103 (426)
T ss_dssp             HHHCCEE-EECS-------STTHHHH---HHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH
T ss_pred             HhcCeEE-EECC-------CHHHHHH---HHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhh
Confidence            4556788 9999       7999999   444555553   444221                   34788888899988


Q ss_pred             CCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcc
Q psy4251          81 KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus        81 ~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nA  120 (292)
                      +|..++..+..++.+...  .+       +...|+||.+.
T Consensus       104 np~v~i~~~~~~i~~~~~--~~-------~~~~DlVi~~~  134 (426)
T d1yovb1         104 VPNCNVVPHFNKIQDFND--TF-------YRQFHIIVCGL  134 (426)
T ss_dssp             STTCCCEEECSCGGGBCH--HH-------HTTCSEEEECC
T ss_pred             CCCCceEeeeccccchHH--HH-------HHhcchheecc
Confidence            888888888877765331  22       13467777653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.88  E-value=0.23  Score=36.43  Aligned_cols=80  Identities=10%  Similarity=-0.018  Sum_probs=41.7

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH-HHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK-SVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~-~v~~~  102 (292)
                      .|.+++ |.|+       +|+|...+..+..+.....+++.+++++++.+. ++     +... ++  |-.+.+ .+++.
T Consensus        28 ~g~~Vl-I~G~-------Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~~-----GAd~-~i--n~~~~~~~~~~~   90 (175)
T d1cdoa2          28 PGSTCA-VFGL-------GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF-----GATD-FV--NPNDHSEPISQV   90 (175)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT-----TCCE-EE--CGGGCSSCHHHH
T ss_pred             CCCEEE-EEec-------CCccchHHHHHHHHhhchheeecchHHHHHHHH-Hc-----CCcE-EE--cCCCcchhHHHH
Confidence            477888 8887       678887755544332222333346666654432 23     3222 22  222222 22333


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      .+...  .+.+|+++.+.|.
T Consensus        91 ~~~~~--~~G~d~vid~~G~  108 (175)
T d1cdoa2          91 LSKMT--NGGVDFSLECVGN  108 (175)
T ss_dssp             HHHHH--TSCBSEEEECSCC
T ss_pred             HHhhc--cCCcceeeeecCC
Confidence            33332  2369999999985

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.71  E-value=0.42  Score=35.13  Aligned_cols=80  Identities=18%  Similarity=0.042  Sum_probs=45.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChH-HHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK-SVKKF  102 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~-~v~~~  102 (292)
                      .|.+++ |.|+       +|+|...+..+..+....+.++.++.++++.+. ++     +.... +  |.++.+ .+.+.
T Consensus        27 ~G~~Vl-V~Ga-------GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~-~l-----Ga~~~-i--~~~~~d~~~~~~   89 (174)
T d1p0fa2          27 PGSTCA-VFGL-------GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL-----GATEC-L--NPKDYDKPIYEV   89 (174)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT-----TCSEE-E--CGGGCSSCHHHH
T ss_pred             CCCEEE-EECC-------CchhHHHHHHHHHcCCceeeccCChHHHHHHHH-Hc-----CCcEE-E--cCCCchhHHHHH
Confidence            477888 8897       799999966655554333333447777765443 22     22222 2  322222 12333


Q ss_pred             HHHHHHhCCCccEEEEcccc
Q psy4251         103 AEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~  122 (292)
                      ....  ..+.+|++|-+.|.
T Consensus        90 ~~~~--~~~G~d~vid~~g~  107 (174)
T d1p0fa2          90 ICEK--TNGGVDYAVECAGR  107 (174)
T ss_dssp             HHHH--TTSCBSEEEECSCC
T ss_pred             HHHh--cCCCCcEEEEcCCC
Confidence            2222  22469999999885

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=89.49  E-value=0.23  Score=34.70  Aligned_cols=71  Identities=10%  Similarity=-0.014  Sum_probs=44.1

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEE--EEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLF--YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v--~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |.++ |-|.       +-+|..+|+.   |.+.|+.|  +..|+++.+++.    +.    ...++.+|.++++.+.++ 
T Consensus         1 k~~i-IiG~-------G~~G~~la~~---L~~~g~~vvvid~d~~~~~~~~----~~----~~~~~~gd~~~~~~l~~a-   60 (134)
T d2hmva1           1 KQFA-VIGL-------GRFGGSIVKE---LHRMGHEVLAVDINEEKVNAYA----SY----ATHAVIANATEENELLSL-   60 (134)
T ss_dssp             CCEE-EECC-------SHHHHHHHHH---HHHTTCCCEEEESCHHHHHHTT----TT----CSEEEECCTTCTTHHHHH-
T ss_pred             CEEE-EECC-------CHHHHHHHHH---HHHCCCeEEEecCcHHHHHHHH----Hh----CCcceeeecccchhhhcc-
Confidence            4566 6677       6889999544   55555544  457887766543    22    234567899998776554 


Q ss_pred             HHHHHhCCCccEEEEccc
Q psy4251         104 EEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg  121 (292)
                       .+    .+.|.+|...+
T Consensus        61 -~i----~~a~~vi~~~~   73 (134)
T d2hmva1          61 -GI----RNFEYVIVAIG   73 (134)
T ss_dssp             -TG----GGCSEEEECCC
T ss_pred             -CC----ccccEEEEEcC
Confidence             11    24677776544

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.42  E-value=1.6  Score=31.17  Aligned_cols=121  Identities=9%  Similarity=0.116  Sum_probs=63.9

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhC--CCCceEEEEccCCChHHHHHHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEK--PSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      .+. |.|+       +++|..+|..+..-.-....++.+++++++..+.++....  ...+..+...|  +.++      
T Consensus         5 KI~-IIGa-------G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~~~------   68 (150)
T d1t2da1           5 KIV-LVGS-------GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TYDD------   68 (150)
T ss_dssp             EEE-EECC-------SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CGGG------
T ss_pred             eEE-EECC-------CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cccc------
Confidence            455 5675       7899999754433222223334466666666666664421  12233333322  2222      


Q ss_pred             HHHHhCCCccEEEEcccccCCCCCCC-CcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCcc
Q psy4251         105 EYQKKFRSLNILVLNAGVFGLGFSHT-EDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES  173 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~~~~~~~~-~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~~  173 (292)
                           ...-|++|.+||....+.+.+ .......+..|.    -+++.+.+.+++..+ .+.++++|...
T Consensus        69 -----~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~----~iv~~i~~~i~~~~p-~aivivvtNPv  128 (150)
T d1t2da1          69 -----LAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNN----KIMIEIGGHIKKNCP-NAFIIVVTNPV  128 (150)
T ss_dssp             -----GTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHH----HHHHHHHHHHHHHCT-TSEEEECSSSH
T ss_pred             -----cCCCcEEEEecccccCCCCCccccchhHHHHHHH----HHHHHHHHHHHhcCC-CeEEEEecCch
Confidence                 235799999999865433222 122344455554    455666666655443 16777776653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.27  E-value=0.98  Score=32.48  Aligned_cols=39  Identities=15%  Similarity=-0.046  Sum_probs=26.6

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDA   73 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~   73 (292)
                      .|.+++ |.|+       +++|...+..+..+   |..|+  .+++++.+.+
T Consensus        27 ~g~~Vl-V~Ga-------G~vG~~~~~~ak~~---G~~Vi~~~~~~~~~~~a   67 (166)
T d1llua2          27 PGQWVA-ISGI-------GGLGHVAVQYARAM---GLHVAAIDIDDAKLELA   67 (166)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHT---TCEEEEEESCHHHHHHH
T ss_pred             CCCEEE-Eeec-------cccHHHHHHHHHHc---CCccceecchhhHHHhh
Confidence            377888 8886       79999997665544   44444  5777776543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=0.15  Score=37.97  Aligned_cols=38  Identities=11%  Similarity=-0.032  Sum_probs=26.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKAND   72 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~   72 (292)
                      +.+++ |+||+      +|+|......+..   .|+.|+  +++.++.+.
T Consensus        32 ~~~vl-V~gas------GGVG~~aiQlAk~---~Ga~Via~~~~~~k~~~   71 (177)
T d1o89a2          32 DGEIV-VTGAS------GGVGSTAVALLHK---LGYQVVAVSGRESTHEY   71 (177)
T ss_dssp             GCEEE-ESSTT------SHHHHHHHHHHHH---TTCCEEEEESCGGGHHH
T ss_pred             CCcEE-EEEcc------ccchHHHHHHHHH---cCCCeEEEecchhHHHH
Confidence            45777 99999      9999999666554   354444  577766543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.66  E-value=2.7  Score=29.38  Aligned_cols=108  Identities=11%  Similarity=0.042  Sum_probs=58.9

Q ss_pred             ccchhhHHHHHHHHhhc-CcEEEEcCHHHHHHHHHHHHhhCC-CCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEc
Q psy4251          42 TGLKKKDGNLCFDLVQS-SKLFYQNCWDKANDAISKILTEKP-SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLN  119 (292)
Q Consensus        42 ~GiG~~~a~~~~~l~~~-g~~v~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~n  119 (292)
                      +++|..+|..+....-. ...++..++++++....++....+ .........|   .+++           ..-|++|.+
T Consensus         9 G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~~~~-----------~~adivvit   74 (140)
T d1a5za1           9 GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---YADL-----------KGSDVVIVA   74 (140)
T ss_dssp             SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---GGGG-----------TTCSEEEEC
T ss_pred             CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---HHHh-----------cCCCEEEEe
Confidence            68999996544333221 133334778888877777765432 1233333322   2221           346999999


Q ss_pred             ccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         120 AGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       120 Ag~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ||....+.+    .-...+..|    .-+++.+.+.+.+..+ .+.++++|..
T Consensus        75 ag~~~~~g~----~r~dl~~~N----~~I~~~i~~~i~~~~p-~aivivvtNP  118 (140)
T d1a5za1          75 AGVPQKPGE----TRLQLLGRN----ARVMKEIARNVSKYAP-DSIVIVVTNP  118 (140)
T ss_dssp             CCCCCCSSC----CHHHHHHHH----HHHHHHHHHHHHHHCT-TCEEEECSSS
T ss_pred             cccccCCCc----chhhhhccc----cchHHHHHHHHHhcCC-CcEEEEeCCc
Confidence            997543221    223344444    3456666676666443 1666666654

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=88.60  E-value=0.12  Score=38.14  Aligned_cols=38  Identities=11%  Similarity=-0.023  Sum_probs=26.9

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKAND   72 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~   72 (292)
                      |.+++ |+||+      +|+|......+..+   |+.|+  +++.++.+.
T Consensus        24 ~~~VL-V~gaa------GgVG~~avQlAk~~---Ga~Viat~~s~~k~~~   63 (167)
T d1tt7a2          24 KGSVL-VTGAT------GGVGGIAVSMLNKR---GYDVVASTGNREAADY   63 (167)
T ss_dssp             GCCEE-EESTT------SHHHHHHHHHHHHH---TCCEEEEESSSSTHHH
T ss_pred             CCEEE-EeCCc------chHHHHHHHHHHHc---CCceEEEecCHHHHHH
Confidence            56777 99999      99999997765544   44444  566666544

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=88.41  E-value=5.1  Score=32.11  Aligned_cols=54  Identities=7%  Similarity=0.147  Sum_probs=35.5

Q ss_pred             EcCHHHHHHHHHHHHhhC-CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          64 QNCWDKANDAISKILTEK-PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        64 ~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      ..+...++.+.+.+.... ...++.+++.|+      .+.++...++..+.|++|.+.-.+
T Consensus       174 D~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~------~~~l~~~~~~~~~fD~Ii~DPP~f  228 (317)
T d2b78a2         174 DLAKRSRALSLAHFEANHLDMANHQLVVMDV------FDYFKYARRHHLTYDIIIIDPPSF  228 (317)
T ss_dssp             ESCTTHHHHHHHHHHHTTCCCTTEEEEESCH------HHHHHHHHHTTCCEEEEEECCCCC
T ss_pred             cCCHHHHHHHHHHHHHhcccCcceEEEEccH------HHHHHHHHhhcCCCCEEEEcChhh
Confidence            366667777777665432 134788999876      344555555556899999986544

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=88.02  E-value=1.5  Score=31.93  Aligned_cols=76  Identities=9%  Similarity=0.099  Sum_probs=50.0

Q ss_pred             ccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHH---------------HHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          42 TGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISK---------------ILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        42 ~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~---------------l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      +-+|..+   +.+|.+.|+.|++  |+.++.+++.++               +.+..  .....+-..+.+.+.+.++.+
T Consensus        11 G~MG~~m---A~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ii~~~~~~~~v~~v~~   85 (176)
T d2pgda2          11 AVMGQNL---ILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKL--KKPRRIILLVKAGQAVDNFIE   85 (176)
T ss_dssp             SHHHHHH---HHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHB--CSSCEEEECSCTTHHHHHHHH
T ss_pred             hHHHHHH---HHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhh--cccceEEEecCchHHHHHHHH
Confidence            5678888   6677788877775  888888776542               22221  122344455777788888888


Q ss_pred             HHHHhCCCccEEEEcccc
Q psy4251         105 EYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~  122 (292)
                      .+.....+=+++|.+...
T Consensus        86 ~l~~~~~~g~iiid~sT~  103 (176)
T d2pgda2          86 KLVPLLDIGDIIIDGGNS  103 (176)
T ss_dssp             HHHHHCCTTCEEEECSCC
T ss_pred             HHHhccccCcEEEecCcc
Confidence            887766666777776543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.99  E-value=1  Score=33.87  Aligned_cols=75  Identities=13%  Similarity=0.073  Sum_probs=48.6

Q ss_pred             CCCCCCceEEEEcCCCCCCCCccc-chhhHHHHHHHHhhcC-cEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCC
Q psy4251          20 ASTYNGCLAILCTGDMEFYPRYTG-LKKKDGNLCFDLVQSS-KLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCR   95 (292)
Q Consensus        20 ~~~l~g~~~vlItGa~~~~~~~~G-iG~~~a~~~~~l~~~g-~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~   95 (292)
                      ..+++|++++ =-|++      +| +|.++    .   ..| ..|+  -.+.+.++.+.+.+...  +.+..++.+|+.+
T Consensus        42 ~~dl~g~~vL-Dlg~G------tG~l~i~a----~---~~g~~~v~~vdi~~~~~~~a~~N~~~~--~~~~~~~~~d~~~  105 (201)
T d1wy7a1          42 LGDIEGKVVA-DLGAG------TGVLSYGA----L---LLGAKEVICVEVDKEAVDVLIENLGEF--KGKFKVFIGDVSE  105 (201)
T ss_dssp             TTSSTTCEEE-EETCT------TCHHHHHH----H---HTTCSEEEEEESCHHHHHHHHHHTGGG--TTSEEEEESCGGG
T ss_pred             cCCCCCCEEE-ECcCc------chHHHHHH----H---HcCCCEEEEEcCcHHHHHHHHHHHHHc--CCCceEEECchhh
Confidence            3678999988 55654      33 43332    2   233 2344  37787787777776655  5688888888643


Q ss_pred             hHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          96 LKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        96 ~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      .             .+++|++|.|.-+.
T Consensus       106 ~-------------~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1         106 F-------------NSRVDIVIMNPPFG  120 (201)
T ss_dssp             C-------------CCCCSEEEECCCCS
T ss_pred             h-------------CCcCcEEEEcCccc
Confidence            2             35799999887653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=87.91  E-value=0.23  Score=35.49  Aligned_cols=117  Identities=9%  Similarity=-0.017  Sum_probs=56.2

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCC--CCceEEEEccCCChHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKP--SAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      |++. |.|+       +.+|..+|..+....-....++..++++++....++.....  .....+..+  .|.++     
T Consensus         2 ~KI~-IIGa-------G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~--~d~~~-----   66 (142)
T d1uxja1           2 KKIS-IIGA-------GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNYAD-----   66 (142)
T ss_dssp             CEEE-EECC-------SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGGG-----
T ss_pred             CeEE-EECC-------CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEec--CcHHH-----
Confidence            3455 5586       68999996654322111222233555555555555532210  112212111  12222     


Q ss_pred             HHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         104 EEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                            ...-|++|.+||....+.+ +.   ...+..|    .-+++.+.+.+.+..+ .+.++++|..
T Consensus        67 ------~~~advvvitag~~~~~~~-~r---~dl~~~N----~~i~~~i~~~i~k~~p-~aivivvtNP  120 (142)
T d1uxja1          67 ------TANSDVIVVTSGAPRKPGM-SR---EDLIKVN----ADITRACISQAAPLSP-NAVIIMVNNP  120 (142)
T ss_dssp             ------GTTCSEEEECCSCC-------------CHHHH----HHHHHHHHHHHGGGCT-TCEEEECSSS
T ss_pred             ------hcCCCEEEEeeeccCCcCc-ch---hHHHhHH----HHHHHHHHHHHhccCC-CceEEEeCCc
Confidence                  1246999999997643222 22   2223334    3577788888877543 1666665554

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=87.88  E-value=0.48  Score=33.67  Aligned_cols=108  Identities=12%  Similarity=0.009  Sum_probs=53.0

Q ss_pred             ccchhhHHHHHHHHhhc-CcEEEEcCHHHHHHHHHHHHhhCCCC-ceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEc
Q psy4251          42 TGLKKKDGNLCFDLVQS-SKLFYQNCWDKANDAISKILTEKPSA-QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLN  119 (292)
Q Consensus        42 ~GiG~~~a~~~~~l~~~-g~~v~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~n  119 (292)
                      +.+|..+|..+...... ...++.+++++++..+.+|.+..+.. .......   +.++           ...-|++|.+
T Consensus        10 G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~~-----------~~~adivvit   75 (142)
T d1y6ja1          10 GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG---DYSD-----------VKDCDVIVVT   75 (142)
T ss_dssp             SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CGGG-----------GTTCSEEEEC
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC---cHHH-----------hCCCceEEEe
Confidence            78999995544333221 13344477877777777776543311 2222211   2221           2346999999


Q ss_pred             ccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         120 AGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       120 Ag~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ||....+.    +.....+..|.    .+++.+.+.+.+..+ ++.++++|..
T Consensus        76 ag~~~~~~----~~r~~l~~~N~----~i~~~i~~~i~~~~p-~ai~ivvtNP  119 (142)
T d1y6ja1          76 AGANRKPG----ETRLDLAKKNV----MIAKEVTQNIMKYYN-HGVILVVSNP  119 (142)
T ss_dssp             CCC----------CHHHHHHHHH----HHHHHHHHHHHHHCC-SCEEEECSSS
T ss_pred             cccccCcC----cchhHHhhHHH----HHHHHHHHHhhccCC-CceEEEecCh
Confidence            99753222    12233444443    556666666665432 1767766654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=87.51  E-value=0.11  Score=39.77  Aligned_cols=40  Identities=5%  Similarity=0.018  Sum_probs=29.3

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKAN   71 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~   71 (292)
                      .+|+||+++ |-|-       +.+|..+   +..|.+.|..|++  .+.++..
T Consensus        23 ~~L~gk~v~-IqG~-------G~VG~~~---A~~L~~~Gakvvv~d~d~~~~~   64 (201)
T d1c1da1          23 GSLDGLTVL-VQGL-------GAVGGSL---ASLAAEAGAQLLVADTDTERVA   64 (201)
T ss_dssp             CCSTTCEEE-EECC-------SHHHHHH---HHHHHHTTCEEEEECSCHHHHH
T ss_pred             CCCCCCEEE-EECC-------CHHHHHH---HHHHHHCCCEEEEecchHHHHH
Confidence            479999999 9887       6889999   5556677888776  4444443

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.4  Score=38.62  Aligned_cols=31  Identities=13%  Similarity=0.139  Sum_probs=19.2

Q ss_pred             CCChHHHHHHHHHHH---HhCCCccEEEEccccc
Q psy4251          93 LCRLKSVKKFAEEYQ---KKFRSLNILVLNAGVF  123 (292)
Q Consensus        93 ls~~~~v~~~~~~~~---~~~~~id~lI~nAg~~  123 (292)
                      +....+...+++.+.   ...++-|++|++|++.
T Consensus       132 ~~T~~e~~~~l~~~~~~~~~~~~~d~~i~aAAVs  165 (290)
T d1p9oa_         132 FTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVS  165 (290)
T ss_dssp             ECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCC
T ss_pred             EeeHHHHHHHHHHHHhhccccccchHHHHHhccc
Confidence            334444444444443   3346789999999986

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=87.31  E-value=2.6  Score=30.35  Aligned_cols=39  Identities=5%  Similarity=-0.203  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHH
Q psy4251          26 CLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAIS   75 (292)
Q Consensus        26 ~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~   75 (292)
                      |++- |.|+       +.+|.++   +..|..+|+.|.+  |+.++.+...+
T Consensus         2 k~ia-IiGa-------G~~G~~~---A~~l~~~G~~V~~~~r~~~~~~~~~~   42 (184)
T d1bg6a2           2 KTYA-VLGL-------GNGGHAF---AAYLALKGQSVLAWDIDAQRIKEIQD   42 (184)
T ss_dssp             CEEE-EECC-------SHHHHHH---HHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEE-EECc-------cHHHHHH---HHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            5677 7777       6889999   6667777877764  88777766543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=87.14  E-value=1.6  Score=31.20  Aligned_cols=74  Identities=12%  Similarity=0.047  Sum_probs=44.8

Q ss_pred             ccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHH--------HhhCCCCceEEEEccCCChHHHHHHHHHHHHhCC
Q psy4251          42 TGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKI--------LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFR  111 (292)
Q Consensus        42 ~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l--------~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~  111 (292)
                      +-+|..+   +..|.+.|+.|++  |+.+..+++.+.-        .+......+.++.+   ..+.++++++++.....
T Consensus         9 G~mG~~l---A~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~~l~~~l~   82 (165)
T d2f1ka2           9 GLIGASL---AGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLEKLIPHLS   82 (165)
T ss_dssp             SHHHHHH---HHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHHHHGGGSC
T ss_pred             cHHHHHH---HHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhhhhhhhcc
Confidence            6788888   5556678888875  7777766654321        01111234444433   35678888888876655


Q ss_pred             CccEEEEccc
Q psy4251         112 SLNILVLNAG  121 (292)
Q Consensus       112 ~id~lI~nAg  121 (292)
                      +=.+++..++
T Consensus        83 ~~~iv~~~~s   92 (165)
T d2f1ka2          83 PTAIVTDVAS   92 (165)
T ss_dssp             TTCEEEECCS
T ss_pred             cccceeeccc
Confidence            5556666554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.93  E-value=0.86  Score=33.03  Aligned_cols=76  Identities=17%  Similarity=0.200  Sum_probs=42.4

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFA  103 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~  103 (292)
                      .|.+++ |.|+       +|+|...+..+..++ ...+++.++.++.+.+ +++     +....+-.-|-.+      ..
T Consensus        27 ~g~~vl-I~Ga-------G~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~a-~~l-----Ga~~~i~~~~~~~------~~   85 (168)
T d1piwa2          27 PGKKVG-IVGL-------GGIGSMGTLISKAMG-AETYVISRSSRKREDA-MKM-----GADHYIATLEEGD------WG   85 (168)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHHT-CEEEEEESSSTTHHHH-HHH-----TCSEEEEGGGTSC------HH
T ss_pred             CCCEEE-EECC-------CCcchhHHHHhhhcc-ccccccccchhHHHHh-hcc-----CCcEEeeccchHH------HH
Confidence            477888 8886       799999866655442 2233345777666543 333     3332222222111      11


Q ss_pred             HHHHHhCCCccEEEEccccc
Q psy4251         104 EEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       104 ~~~~~~~~~id~lI~nAg~~  123 (292)
                         ....+..|.++.+.|..
T Consensus        86 ---~~~~~~~d~vi~~~~~~  102 (168)
T d1piwa2          86 ---EKYFDTFDLIVVCASSL  102 (168)
T ss_dssp             ---HHSCSCEEEEEECCSCS
T ss_pred             ---HhhhcccceEEEEecCC
Confidence               12335789999987754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.86  E-value=1.3  Score=31.20  Aligned_cols=108  Identities=11%  Similarity=0.059  Sum_probs=57.1

Q ss_pred             ccchhhHHHHHHHHhhcC-cEEEEcCHHHHHHHHHHHHhhCC--CCceEEEE-ccCCChHHHHHHHHHHHHhCCCccEEE
Q psy4251          42 TGLKKKDGNLCFDLVQSS-KLFYQNCWDKANDAISKILTEKP--SAQCIAME-LDLCRLKSVKKFAEEYQKKFRSLNILV  117 (292)
Q Consensus        42 ~GiG~~~a~~~~~l~~~g-~~v~~r~~~~~~~~~~~l~~~~~--~~~~~~~~-~Dls~~~~v~~~~~~~~~~~~~id~lI  117 (292)
                      +.+|..+|..+....... ..++..++++++....+|....+  ........ -|   .++           ...-|++|
T Consensus         9 G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d---~~~-----------~~~adiVv   74 (142)
T d1ojua1           9 GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD---YSL-----------LKGSEIIV   74 (142)
T ss_dssp             SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC---GGG-----------GTTCSEEE
T ss_pred             CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC---HHH-----------hccccEEE
Confidence            789999965433322221 33445778887777767754321  11222222 22   222           13469999


Q ss_pred             EcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         118 LNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       118 ~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ..||....+.    +.....+..|    ..+.+...+.+.+..+ .+.++++|..
T Consensus        75 itag~~~~~g----~~r~~l~~~n----~~i~~~i~~~i~~~~p-~aivivvtNP  120 (142)
T d1ojua1          75 VTAGLARKPG----MTRLDLAHKN----AGIIKDIAKKIVENAP-ESKILVVTNP  120 (142)
T ss_dssp             ECCCCCCCSS----CCHHHHHHHH----HHHHHHHHHHHHTTST-TCEEEECSSS
T ss_pred             EeccccCCCC----CchHHHHHHh----hHHHHHHHHHHHhhCC-CcEEEEecCC
Confidence            9999753222    1223344333    4455666666666443 1666666664

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=86.39  E-value=4.2  Score=32.64  Aligned_cols=118  Identities=13%  Similarity=0.082  Sum_probs=64.0

Q ss_pred             CCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHH
Q psy4251          23 YNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVK  100 (292)
Q Consensus        23 l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~  100 (292)
                      .+|++++ =.++.      .| |+++   .+..  .+..|+  ..+...++.+.+.+.... -.++.+++.|..      
T Consensus       144 ~~g~rVL-Dl~~g------tG-~~s~---~~a~--g~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~~i~~d~~------  203 (318)
T d1wxxa2         144 FRGERAL-DVFSY------AG-GFAL---HLAL--GFREVVAVDSSAEALRRAEENARLNG-LGNVRVLEANAF------  203 (318)
T ss_dssp             CCEEEEE-EETCT------TT-HHHH---HHHH--HEEEEEEEESCHHHHHHHHHHHHHTT-CTTEEEEESCHH------
T ss_pred             hCCCeee-ccCCC------Cc-HHHH---HHHh--cCCcEEeecchHHHHHHHHHHHHHcC-CCCcceeeccHH------
Confidence            4688887 44443      33 3333   2222  233454  377888888777776542 236888887764      


Q ss_pred             HHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ++.+.+.....+.|+||.+.-.+..    +..+....    ......++..++..++  ++  |.+|+.|++
T Consensus       204 ~~~~~~~~~~~~fD~Vi~DpP~~~~----~~~~~~~~----~~~~~~l~~~a~~lLk--pG--G~Lv~~scs  263 (318)
T d1wxxa2         204 DLLRRLEKEGERFDLVVLDPPAFAK----GKKDVERA----YRAYKEVNLRAIKLLK--EG--GILATASCS  263 (318)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCSCC----STTSHHHH----HHHHHHHHHHHHHTEE--EE--EEEEEEECC
T ss_pred             HHhhhhHhhhcCCCEEEEcCCcccc----chHHHHHH----HHHHHHHHHHHHHHcC--CC--CEEEEEeCC
Confidence            3334444445689999998754432    22222111    1123345555555554  33  777766554

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.93  E-value=1.7  Score=31.12  Aligned_cols=83  Identities=12%  Similarity=0.071  Sum_probs=48.8

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCC---ChHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLC---RLKSVK  100 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls---~~~~v~  100 (292)
                      +|+.+.+||.+       +|.|-.+   +-.+...|..+.--+++.    .++|++..|.....-=++|++   +.+...
T Consensus         2 ~G~rvaiit~s-------GG~~~l~---aD~~~~~Gl~l~~l~~~t----~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~   67 (163)
T d2csua3           2 RGNKVAIMTNA-------GGPGVLT---ADELDKRGLKLATLEEKT----IEELRSFLPPMAAVKNPVDMIASARGEDYY   67 (163)
T ss_dssp             SSSEEEEEESC-------HHHHHHH---HHHHHTTTCEECCCCHHH----HHHHHHHSCTTCEESSEEECCTTCCHHHHH
T ss_pred             CCCeEEEEECC-------hHHHHHH---HHHHHHcCCccCCCCHHH----HHHHHHhCCCcccCCCcccccCCCCHHHHH
Confidence            46666647766       7888888   566667888886555544    334444444322112234443   456666


Q ss_pred             HHHHHHHHhCCCccEEEEccc
Q psy4251         101 KFAEEYQKKFRSLNILVLNAG  121 (292)
Q Consensus       101 ~~~~~~~~~~~~id~lI~nAg  121 (292)
                      +.++.+.+. +.+|.++....
T Consensus        68 ~~l~~~~~d-~~vd~v~v~~~   87 (163)
T d2csua3          68 RTAKLLLQD-PNVDMLIAICV   87 (163)
T ss_dssp             HHHHHHHHS-TTCSEEEEEEE
T ss_pred             HHHHHHHcC-CCcCEEEEeec
Confidence            666666554 67888765443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=85.35  E-value=0.58  Score=33.97  Aligned_cols=72  Identities=13%  Similarity=0.144  Sum_probs=42.1

Q ss_pred             CCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEE--EcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          24 NGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFY--QNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        24 ~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~--~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .|.+++ |.|+       +|+|...+..+..+   |+.++  .++.++.+ .++++     +....   .|-.+.+..  
T Consensus        30 ~G~~Vl-I~Ga-------G~vG~~a~qlak~~---Ga~~i~~~~~~~~~~-~a~~l-----Gad~~---i~~~~~~~~--   87 (168)
T d1uufa2          30 PGKKVG-VVGI-------GGLGHMGIKLAHAM---GAHVVAFTTSEAKRE-AAKAL-----GADEV---VNSRNADEM--   87 (168)
T ss_dssp             TTCEEE-EECC-------SHHHHHHHHHHHHT---TCEEEEEESSGGGHH-HHHHH-----TCSEE---EETTCHHHH--
T ss_pred             CCCEEE-Eecc-------chHHHHHHHHhhcc---cccchhhccchhHHH-HHhcc-----CCcEE---EECchhhHH--
Confidence            478888 8886       79999996665543   44433  45555543 33444     32222   344444322  


Q ss_pred             HHHHHHHhCCCccEEEEcccc
Q psy4251         102 FAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nAg~  122 (292)
                           ......+|++|.+.|.
T Consensus        88 -----~~~~~~~D~vid~~g~  103 (168)
T d1uufa2          88 -----AAHLKSFDFILNTVAA  103 (168)
T ss_dssp             -----HTTTTCEEEEEECCSS
T ss_pred             -----HHhcCCCceeeeeeec
Confidence                 1223479999999884

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=84.40  E-value=0.27  Score=32.10  Aligned_cols=32  Identities=9%  Similarity=-0.050  Sum_probs=24.0

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ   64 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~   64 (292)
                      +++||+++ |.|.       +..|+++|+.   |.+.|+.|++
T Consensus         2 ~~~~K~v~-ViGl-------G~sG~s~a~~---L~~~g~~v~~   33 (93)
T d2jfga1           2 DYQGKNVV-IIGL-------GLTGLSCVDF---FLARGVTPRV   33 (93)
T ss_dssp             CCTTCCEE-EECC-------SHHHHHHHHH---HHHTTCCCEE
T ss_pred             CcCCCEEE-EEeE-------CHHHHHHHHH---HHHCCCEEEE
Confidence            78999998 8888       5779999555   5566666664

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=83.84  E-value=5.3  Score=27.91  Aligned_cols=112  Identities=9%  Similarity=-0.024  Sum_probs=59.3

Q ss_pred             EEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EE--EEcCHHHHHHHHHHHHhhCC-CCceEEEEccCCChHHHHHH
Q psy4251          28 AILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LF--YQNCWDKANDAISKILTEKP-SAQCIAMELDLCRLKSVKKF  102 (292)
Q Consensus        28 ~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v--~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v~~~  102 (292)
                      +. |.|+       +.+|..+|..   +..++.  .+  +..++++++..+.++....+ .........  .+.+.+   
T Consensus         4 i~-IIGa-------G~VG~~~a~~---l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~~~~---   67 (143)
T d1llda1           4 LA-VIGA-------GAVGSTLAFA---AAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDPEIC---   67 (143)
T ss_dssp             EE-EECC-------SHHHHHHHHH---HHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCGGGG---
T ss_pred             EE-EECC-------CHHHHHHHHH---HHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCHHHh---
Confidence            44 5586       6899999554   444443  23  34678777777777765321 112222221  122221   


Q ss_pred             HHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       103 ~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                              ..-|++|.+||....+.    +.....+..|.    -+++...+.+.+..+ .+.++++|..
T Consensus        68 --------~daDvVVitaG~~~~~g----~~R~dl~~~N~----~i~~~i~~~i~~~~p-~ai~ivvtNP  120 (143)
T d1llda1          68 --------RDADMVVITAGPRQKPG----QSRLELVGATV----NILKAIMPNLVKVAP-NAIYMLITNP  120 (143)
T ss_dssp             --------TTCSEEEECCCCCCCTT----CCHHHHHHHHH----HHHHHHHHHHHHHCT-TSEEEECCSS
T ss_pred             --------hCCcEEEEecccccCCC----CchhhhhhhhH----HHHHHHHHHHHhhCC-CeEEEEeCCc
Confidence                    23599999999753222    22234455444    455566666655443 1666666653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.27  E-value=6.5  Score=31.38  Aligned_cols=61  Identities=11%  Similarity=0.048  Sum_probs=38.9

Q ss_pred             hcCcEEEE--cCHHHHHHHHHHHHhhC-CCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEccccc
Q psy4251          57 QSSKLFYQ--NCWDKANDAISKILTEK-PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus        57 ~~g~~v~~--r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~  123 (292)
                      ..|+.|+.  .+...++.+.+.+.... ...++.+++.|+      .+++++...+..+.|+||++.=.+
T Consensus       152 ~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~------~~~l~~~~~~~~~fD~IilDPP~f  215 (309)
T d2igta1         152 AAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA------MKFIQREERRGSTYDIILTDPPKF  215 (309)
T ss_dssp             HTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH------HHHHHHHHHHTCCBSEEEECCCSE
T ss_pred             hCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCH------HHhHHHHhhcCCCCCEEEECCCcc
Confidence            34556654  56667777766654332 234688888776      355566656556899999986544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=82.86  E-value=5.8  Score=27.66  Aligned_cols=113  Identities=8%  Similarity=-0.060  Sum_probs=63.0

Q ss_pred             eEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCc--EEEE----cCHHHHHHHHHHHHhhCC-CCceEEEEccCCChHHH
Q psy4251          27 LAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSK--LFYQ----NCWDKANDAISKILTEKP-SAQCIAMELDLCRLKSV   99 (292)
Q Consensus        27 ~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~--~v~~----r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dls~~~~v   99 (292)
                      .+. |.|++      +.+|..+|..   +..++.  .++.    .+.+.++....++....+ .........|   .++ 
T Consensus         2 KV~-IiGaa------G~VG~~~A~~---l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~---~~~-   67 (142)
T d1o6za1           2 KVS-VVGAA------GTVGAAAGYN---IALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG---YED-   67 (142)
T ss_dssp             EEE-EETTT------SHHHHHHHHH---HHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC---GGG-
T ss_pred             eEE-EECCC------CcHHHHHHHH---HHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC---HHH-
Confidence            355 78887      8999999554   444442  3332    335566655666654221 2233333333   332 


Q ss_pred             HHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         100 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       100 ~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                                ...-|++|.+||....+.    +.....++.|    .-+++.+.+.+.+..+ ++.++++|..
T Consensus        68 ----------~~~aDiVvitaG~~~~~g----~~R~dl~~~N----~~I~~~i~~~i~~~~p-~~i~ivvtNP  121 (142)
T d1o6za1          68 ----------TAGSDVVVITAGIPRQPG----QTRIDLAGDN----APIMEDIQSSLDEHND-DYISLTTSNP  121 (142)
T ss_dssp             ----------GTTCSEEEECCCCCCCTT----CCHHHHHHHH----HHHHHHHHHHHHTTCS-CCEEEECCSS
T ss_pred             ----------hhhcCEEEEecccccccC----CchhhHHHHH----HHHHHHHHHHHHhcCC-CceEEEecCh
Confidence                      135799999999753222    2234455544    3466677777776543 2677766654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.76  E-value=0.59  Score=33.31  Aligned_cols=33  Identities=6%  Similarity=0.041  Sum_probs=24.4

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ   64 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~   64 (292)
                      .+++||+++ |.||       +.+|..-   +..|...|+.|.+
T Consensus         9 ~~l~gkrvL-ViGg-------G~va~~k---a~~Ll~~GA~VtV   41 (150)
T d1kyqa1           9 HQLKDKRIL-LIGG-------GEVGLTR---LYKLMPTGCKLTL   41 (150)
T ss_dssp             ECCTTCEEE-EEEE-------SHHHHHH---HHHHGGGTCEEEE
T ss_pred             eeeCCCEEE-EECC-------CHHHHHH---HHHHHHCCCEEEE
Confidence            568999999 8887       3466555   6777788877764

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.98  E-value=4.5  Score=28.39  Aligned_cols=80  Identities=10%  Similarity=0.076  Sum_probs=46.9

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      +++|+.++ =.|++     ++++|.+.   +. .+...+..+-.+.+..+.+.+.+.......++.+++.|..      +
T Consensus        12 ~~~g~~vl-Dl~~G-----tG~~~iea---~~-rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~------~   75 (152)
T d2esra1          12 YFNGGRVL-DLFAG-----SGGLAIEA---VS-RGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE------R   75 (152)
T ss_dssp             CCCSCEEE-EETCT-----TCHHHHHH---HH-TTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH------H
T ss_pred             hCCCCeEE-EcCCc-----cCHHHHHH---HH-hCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccc------c
Confidence            57899887 44433     04455544   22 2222223334777777777777765544567999998843      2


Q ss_pred             HHHHHHHhCCCccEEEEcc
Q psy4251         102 FAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nA  120 (292)
                      +++   ....+.|+++.+.
T Consensus        76 ~l~---~~~~~fDiIf~DP   91 (152)
T d2esra1          76 AID---CLTGRFDLVFLDP   91 (152)
T ss_dssp             HHH---HBCSCEEEEEECC
T ss_pred             ccc---ccccccceeEech
Confidence            222   2345799998864

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.91  E-value=0.67  Score=34.44  Aligned_cols=93  Identities=12%  Similarity=0.079  Sum_probs=51.7

Q ss_pred             cccCCCCCCCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcC----HHHHHHH------HHHHHhhCC
Q psy4251          13 LNKLLHPASTYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNC----WDKANDA------ISKILTEKP   82 (292)
Q Consensus        13 ~~~~~~~~~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~----~~~~~~~------~~~l~~~~~   82 (292)
                      |.+.......+.||++. |.|.       +.||+++++.   +..-|..|+.-+    .+...+.      .+++-+   
T Consensus        32 W~~~~~~~~~l~~k~vg-iiG~-------G~IG~~va~~---~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~---   97 (184)
T d1ygya1          32 WKRSSFSGTEIFGKTVG-VVGL-------GRIGQLVAQR---IAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLA---   97 (184)
T ss_dssp             CCGGGCCBCCCTTCEEE-EECC-------SHHHHHHHHH---HHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHH---
T ss_pred             CCccccccccccceeee-eccc-------cchhHHHHHH---hhhccceEEeecCCCChhHHhhcCceeccHHHHHh---
Confidence            43334456778999999 8887       7999999555   445677777532    2222111      222322   


Q ss_pred             CCceEEEEccCCChHHHHHHH-HHHHHhCCCccEEEEcccc
Q psy4251          83 SAQCIAMELDLCRLKSVKKFA-EEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        83 ~~~~~~~~~Dls~~~~v~~~~-~~~~~~~~~id~lI~nAg~  122 (292)
                      ...+..+.|.+++.  .+.++ ++..+.+. -+.++-|.|.
T Consensus        98 ~sDiv~~~~Plt~~--T~~lin~~~l~~mk-~~a~lIN~sR  135 (184)
T d1ygya1          98 RADFISVHLPKTPE--TAGLIDKEALAKTK-PGVIIVNAAR  135 (184)
T ss_dssp             HCSEEEECCCCSTT--TTTCBCHHHHTTSC-TTEEEEECSC
T ss_pred             hCCEEEEcCCCCch--hhhhhhHHHHhhhC-CCceEEEecc
Confidence            24677777777754  23343 23333333 4555555554

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.32  E-value=2.7  Score=31.80  Aligned_cols=78  Identities=10%  Similarity=0.034  Sum_probs=49.7

Q ss_pred             CceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHH
Q psy4251          25 GCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAE  104 (292)
Q Consensus        25 g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~  104 (292)
                      |.+++ ..|++      +|---++   +.++.....+.+-++.+-.+.+.+.+.+.. -.++.++..|..+.        
T Consensus        79 g~~VL-eIGsG------sGY~tai---la~l~g~~V~~ie~~~~l~~~a~~~l~~~g-~~nv~~~~gd~~~g--------  139 (215)
T d1jg1a_          79 GMNIL-EVGTG------SGWNAAL---ISEIVKTDVYTIERIPELVEFAKRNLERAG-VKNVHVILGDGSKG--------  139 (215)
T ss_dssp             TCCEE-EECCT------TSHHHHH---HHHHHCSCEEEEESCHHHHHHHHHHHHHTT-CCSEEEEESCGGGC--------
T ss_pred             cceEE-EecCC------CChhHHH---HHHhhCceeEEEeccHHHHHHHHHHHHHcC-CceeEEEECccccC--------
Confidence            55677 66644      4444444   455654334445588777777777776542 46899999997641        


Q ss_pred             HHHHhCCCccEEEEccccc
Q psy4251         105 EYQKKFRSLNILVLNAGVF  123 (292)
Q Consensus       105 ~~~~~~~~id~lI~nAg~~  123 (292)
                        ....++.|.++.++++.
T Consensus       140 --~~~~~pfD~Iiv~~a~~  156 (215)
T d1jg1a_         140 --FPPKAPYDVIIVTAGAP  156 (215)
T ss_dssp             --CGGGCCEEEEEECSBBS
T ss_pred             --CcccCcceeEEeecccc
Confidence              12236899999988875

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.94  E-value=5.1  Score=29.18  Aligned_cols=83  Identities=11%  Similarity=0.168  Sum_probs=52.3

Q ss_pred             CCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEEcCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHH
Q psy4251          22 TYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKK  101 (292)
Q Consensus        22 ~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~  101 (292)
                      .++|+.++=+-.|+      +++|.+.   + ..++..++.+-.+.+..+.+.+.+.......++.++..|+.      +
T Consensus        39 ~~~~~~vLDlfaGs------G~~g~ea---~-srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~------~  102 (182)
T d2fhpa1          39 YFDGGMALDLYSGS------GGLAIEA---V-SRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN------R  102 (182)
T ss_dssp             CCSSCEEEETTCTT------CHHHHHH---H-HTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH------H
T ss_pred             hcCCCEEEEccccc------cccccee---e-ecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccch------h
Confidence            46788877333444      5677765   2 23333344445888888777777765543457888888864      4


Q ss_pred             HHHHHHHhCCCccEEEEcc
Q psy4251         102 FAEEYQKKFRSLNILVLNA  120 (292)
Q Consensus       102 ~~~~~~~~~~~id~lI~nA  120 (292)
                      +++++.....+.|+++.+.
T Consensus       103 ~l~~~~~~~~~fDlIflDP  121 (182)
T d2fhpa1         103 ALEQFYEEKLQFDLVLLDP  121 (182)
T ss_dssp             HHHHHHHTTCCEEEEEECC
T ss_pred             hhhhhcccCCCcceEEech
Confidence            4555555555799998765

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.75  E-value=7.3  Score=31.18  Aligned_cols=90  Identities=17%  Similarity=0.074  Sum_probs=51.8

Q ss_pred             cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHHHHHHHHHHHHhCCCccEEEEcccccCCCCCCCCcchhhhhhhhhhH
Q psy4251          65 NCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLA  144 (292)
Q Consensus        65 r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~~~~~~~~~~~id~lI~nAg~~~~~~~~~~~~~~~~~~vN~~~  144 (292)
                      .+.+.++.+.+.+....-..++.+++.|+-      +....+.....+.|+||.+.-.+..    +..+....    .-.
T Consensus       176 ~s~~al~~a~~N~~~ngl~~~~~~~~~d~~------~~~~~~~~~~~~fD~Vi~DpP~~~~----~~~~~~~~----~~~  241 (324)
T d2as0a2         176 KSPRAIETAKENAKLNGVEDRMKFIVGSAF------EEMEKLQKKGEKFDIVVLDPPAFVQ----HEKDLKAG----LRA  241 (324)
T ss_dssp             SCHHHHHHHHHHHHHTTCGGGEEEEESCHH------HHHHHHHHTTCCEEEEEECCCCSCS----SGGGHHHH----HHH
T ss_pred             CCHHHHHHHHHHHHHcCCCccceeeechhh------hhhHHHHhccCCCCchhcCCccccC----CHHHHHHH----HHH
Confidence            778778777777765533347888887763      3344444455689999998765432    22222222    122


Q ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEEcCc
Q psy4251         145 HFYLTLQLENALIKGAKLFARVVVVSSE  172 (292)
Q Consensus       145 ~~~l~~~ll~~l~~~~~~~~~iV~vsS~  172 (292)
                      ...++..+++.++  ++  |.+|+.+++
T Consensus       242 y~~l~~~a~~ll~--pG--G~lv~~s~s  265 (324)
T d2as0a2         242 YFNVNFAGLNLVK--DG--GILVTCSCS  265 (324)
T ss_dssp             HHHHHHHHHTTEE--EE--EEEEEEECC
T ss_pred             HHHHHHHHHHHcC--CC--cEEEEEeCC
Confidence            3345555555554  33  777766654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=80.55  E-value=1.3  Score=33.23  Aligned_cols=71  Identities=14%  Similarity=0.063  Sum_probs=42.5

Q ss_pred             CCCCCceEEEEcCCCCCCCCcccchhhHHHHHHHHhhcCcEEEE--cCHHHHHHHHHHHHhhCCCCceEEEEccCCChHH
Q psy4251          21 STYNGCLAILCTGDMEFYPRYTGLKKKDGNLCFDLVQSSKLFYQ--NCWDKANDAISKILTEKPSAQCIAMELDLCRLKS   98 (292)
Q Consensus        21 ~~l~g~~~vlItGa~~~~~~~~GiG~~~a~~~~~l~~~g~~v~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dls~~~~   98 (292)
                      .++.|++|+ =-|++      +|+ .++  .+..+ ... .|++  .+.+.++.+.+.+      .++.++.+|+.+.  
T Consensus        45 ~dl~Gk~VL-DlGcG------tG~-l~i--~a~~~-ga~-~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l--  104 (197)
T d1ne2a_          45 GNIGGRSVI-DAGTG------NGI-LAC--GSYLL-GAE-SVTAFDIDPDAIETAKRNC------GGVNFMVADVSEI--  104 (197)
T ss_dssp             TSSBTSEEE-EETCT------TCH-HHH--HHHHT-TBS-EEEEEESCHHHHHHHHHHC------TTSEEEECCGGGC--
T ss_pred             CCCCCCEEE-EeCCC------CcH-HHH--HHHHc-CCC-cccccccCHHHHHHHHHcc------ccccEEEEehhhc--
Confidence            678999999 77776      552 222  12222 222 3443  5666555444322      3678899998542  


Q ss_pred             HHHHHHHHHHhCCCccEEEEcccc
Q psy4251          99 VKKFAEEYQKKFRSLNILVLNAGV  122 (292)
Q Consensus        99 v~~~~~~~~~~~~~id~lI~nAg~  122 (292)
                                 .++.|+||.|.-+
T Consensus       105 -----------~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         105 -----------SGKYDTWIMNPPF  117 (197)
T ss_dssp             -----------CCCEEEEEECCCC
T ss_pred             -----------CCcceEEEeCccc
Confidence                       2579999998654