Psyllid ID: psy4268

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALPPPHEPDYIVPE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccccccccccccEccccHHHHHHHHHccccccccccccccHcccHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mlgyyfsapsgekrylcdscdrtysnrsslkrhmnyecgklpafpctlcsyATKRKTSLASHYYRkhvgedgalppphepdyivpe
Flexible Loop (DISEMBL)
mlgyyfsapsgekrylcdSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHvgedgalppphepdyivpe
Low Complexity Region (SEG)
MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALPPPHEPDYIVPE
Disordered region (IsUnstruct)
****YF******KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH*******************
Disordered Region (DISOPRED)
MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALPPPHEPDYIVP*
Disordered Region (DISEMBL)
MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALPPPHEPDYIVPE
Disordered Region (DISPRO)
MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALPPPHEPDYIVP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALPPPHEPDYIVPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	86	2.2.26 [Sep-21-2011]
Q867Z4	970	Longitudinals lacking pro	yes	N/A	0.651	0.057	0.438	1e-08
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.593	0.064	0.431	8e-08
P42283	891	Longitudinals lacking pro	no	N/A	0.825	0.079	0.383	5e-07
Q9V5M6	963	Longitudinals lacking pro	no	N/A	0.639	0.057	0.410	3e-06
A8MT65	544	Zinc finger protein 891 O	yes	N/A	0.779	0.123	0.376	1e-05
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.476	0.046	0.463	1e-05
Q5RC79	407	Zinc finger protein 1 hom	no	N/A	0.790	0.167	0.371	2e-05
Q6P2D0	407	Zinc finger protein 1 hom	no	N/A	0.790	0.167	0.371	2e-05
P08970	941	Protein suppressor of hai	no	N/A	0.779	0.071	0.376	2e-05
Q08876	899	Protein suppressor of hai	N/A	N/A	0.779	0.074	0.376	3e-05

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 12  EKRYLCDSCDRTYSNRSSLKRHMNYEC-GKLPAFPCTLCSYATKRKTSLASHYYRKH 67
           E RY+C  C + Y  +S+L+RH N EC GK P  PC  CSY  K++ +L  H  + H
Sbjct: 900 ESRYVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCSYKAKQRGNLGVHVRKHH 956

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.
Drosophila melanogaster (taxid: 7227)

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 27/51 (52%)

Query: 17  CDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
           C  C R Y  +SSL+ H  +ECGK P F C  C Y  K+K  +  H  R H
Sbjct: 687 CPVCGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMH 737

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 11  GEKRYLCDSCDRTYSNRSSLKRHMNYEC-GKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
           GE  Y C  C + Y  +S+L+RH N EC GK P+  C  C Y +K++ +L  H  RKH  
Sbjct: 787 GEPVYECRHCGKKYRWKSTLRRHENVECGGKEPSHQCPYCPYKSKQRGNLGVH-VRKHHT 845

Query: 70  EDGALPPPHEPDY 82
           +   LP      Y
Sbjct: 846 DLPQLPSKRRSKY 858

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 12  EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT-LCSYATKRKTSLASHYYRK 66
           EK ++C +C+RTY  ++SLK H+  ECG  P + C+ +C YAT   ++L  H   K
Sbjct: 846 EKPWVCRNCNRTYKWKNSLKCHLKNECGLPPRYFCSKMCGYATNVHSNLKRHLNTK 901

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|A8MT65|ZN891_HUMAN Zinc finger protein 891 OS=Homo sapiens GN=ZNF891 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 2   LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
           L  Y  +  GEK+Y C  C + +++ S+L+RH+    G+ P + C  C  A  +KTSL +
Sbjct: 335 LTLYKKSHMGEKQYECKECGKVFNDSSTLRRHVRTHTGEKP-YECNQCGKAFSQKTSLKA 393

Query: 62  HYYRKHVGE 70
           H  R H GE
Sbjct: 394 H-MRTHTGE 401

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 14  RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATK 54
           +Y C+ C +TY  + SLKRH NYECG  P   C  C +  K
Sbjct: 708 KYACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCK 748

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q5RC79|ZFP1_PONAB Zinc finger protein 1 homolog OS=Pongo abelii GN=ZFP1 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 1   MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLA 60
            L  +    +GEK Y C  C +T+S RS+L+ H+    G+ P + C+ C  A  RK+ L+
Sbjct: 338 QLIIHMRTHTGEKPYECTECGKTFSQRSTLRLHLRIHTGEKP-YECSECGKAFSRKSRLS 396

Query: 61  SHYYRKHVGE 70
            H  R H+GE
Sbjct: 397 VH-QRVHIGE 405

May be involved in transcriptional regulation.

Pongo abelii (taxid: 9601)

>sp|Q6P2D0|ZFP1_HUMAN Zinc finger protein 1 homolog OS=Homo sapiens GN=ZFP1 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 1   MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLA 60
            L  +    +GEK Y C  C +T+S RS+L+ H+    G+ P + C+ C  A  RK+ L+
Sbjct: 338 QLIIHMRTHTGEKPYECTECGKTFSQRSTLRLHLRIHTGEKP-YECSECGKAFSRKSRLS 396

Query: 61  SHYYRKHVGE 70
            H  R H+GE
Sbjct: 397 VH-QRVHIGE 405

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|P08970|SUHW_DROME Protein suppressor of hairy wing OS=Drosophila melanogaster GN=su(Hw) PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 2   LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
           L  +    +GEK + CD CD+ +S   +LK+H  Y  G+ P + CT+C+ A   K  L  
Sbjct: 428 LNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKP-YSCTVCNQAFAVKEVLNR 486

Query: 62  HYYRKHVGE 70
           H  R H GE
Sbjct: 487 HMKR-HTGE 494

Component of the gypsy chromatin insulator complex which is required for the function of the gypsy chromatin insulator and other endogenous chromatin insulators. Chromatin insulators are regulatory elements which establish independent domains of transcriptional activity within eukaryotic genomes. Insulators have two defining properties; they can block the communication between an enhancer and a promoter when placed between them and can also buffer transgenes from position effect variegation (PEV). Insulators are proposed to structure the chromatin fiber into independent domains of differing transcriptional potential by promoting the formation of distinct chromatin loops. This chromatin looping may involve the formation of insulator bodies, where homotypic interactions between individual subunits of the insulator complex could promote the clustering of widely spaced insulators at the nuclear periphery. Within the gypsy insulator complex, this protein binds specifically to a region of the gypsy element located 3' of the 5' long terminal repeat (LTR), and may also mediate interaction with other endogenous insulators at sites distinct from those recognized by Cp190.

Drosophila melanogaster (taxid: 7227)

>sp|Q08876|SUHW_DROVI Protein suppressor of hairy wing OS=Drosophila virilis GN=su(Hw) PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 2   LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
           L  +    +GEK + CD CD+ +S   +LK+H  Y  G+ P + CT+CS +   K  L  
Sbjct: 427 LNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKP-YTCTVCSQSFAVKEVLNR 485

Query: 62  HYYRKHVGE 70
           H  R H GE
Sbjct: 486 HMKR-HTGE 493

Su(Hw) controls the phenotypic effect of the gypsy transposable element. Binds specifically to a region of the gipsy element located 3' of the 5'LTR. It is probably a transcription factor. Could play a role in the establishment of chromatin domains.

Drosophila virilis (taxid: 7244)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
242016195	94	hypothetical protein Phum_PHUM397820 [Pe	0.662	0.606	0.385	1e-07
332026407	171	Longitudinals lacking protein, isoforms	0.639	0.321	0.454	1e-07
307179867	202	Longitudinals lacking protein, isoform G	0.744	0.316	0.421	1e-07
270003816	1844	hypothetical protein TcasGA2_TC003097 [T	0.697	0.032	0.419	2e-07
242018533	152	zinc finger protein X-chromosomal protei	0.709	0.401	0.377	2e-07
28573885	970	longitudinals lacking, isoform I [Drosop	0.651	0.057	0.438	5e-07
195026446	1032	GH20621 [Drosophila grimshawi] gi|193902	0.651	0.054	0.421	7e-07
2467112	1010	Lola-like protein [Drosophila hydei]	0.651	0.055	0.421	8e-07
195026424	319	GH20627 [Drosophila grimshawi] gi|193902	0.651	0.175	0.428	8e-07
45552567	771	longitudinals lacking, isoform W [Drosop	0.709	0.079	0.393	1e-06

>gi|242016195|ref|XP_002428715.1| hypothetical protein Phum_PHUM397820 [Pediculus humanus corporis] gi|212513392|gb|EEB15977.1| hypothetical protein Phum_PHUM397820 [Pediculus humanus corporis]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV 68
          ++++ C  C +TY  ++SL RH+ ++CGKLP F C  C Y TK +  +  H+ R H+
Sbjct: 20 KRQFHCHQCQKTYREKTSLNRHLRWDCGKLPQFRCNYCQYETKWRFRIKEHFLRNHM 76

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026407|gb|EGI66536.1| Longitudinals lacking protein, isoforms A/B/D/L [Acromyrmex echinatior]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query: 15  YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
           ++C  C + Y  R++L RH  YECGK P F C  C Y TK++++++SH   KHVG
Sbjct: 105 HVCKDCGKIYKQRNALWRHFKYECGKSPRFQCPYCRYRTKQRSNMSSHIKHKHVG 159

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179867|gb|EFN68024.1| Longitudinals lacking protein, isoform G [Camponotus floridanus]

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%)

Query: 12  EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGED 71
           ++R+ C  C ++Y N   LKRHM YECGK P+F C  C++++K + +L +H   +HV   
Sbjct: 123 DRRHNCSRCGKSYKNAYILKRHMLYECGKAPSFSCPHCAFSSKYERNLKAHINHRHVDLQ 182

Query: 72  GALP 75
            ALP
Sbjct: 183 PALP 186

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003816|gb|EFA00264.1| hypothetical protein TcasGA2_TC003097 [Tribolium castaneum]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 16   LCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP 75
            LC +C +TY ++ +L+RH+NYECGK P   C LC   TK ++S+  H   +H G     P
Sbjct: 1356 LCSNCGKTYKSKGNLQRHLNYECGKQPHITCPLCGLQTKHRSSMKRHVLNRHPGHQCHYP 1415

Query: 76   PP 77
             P
Sbjct: 1416 CP 1417

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018533|ref|XP_002429729.1| zinc finger protein X-chromosomal protein, putative [Pediculus humanus corporis] gi|212514735|gb|EEB16991.1| zinc finger protein X-chromosomal protein, putative [Pediculus humanus corporis]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 12  EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGED 71
           + ++ C +C+R Y N+ SL RH+ +ECGK P+FPC+ C Y  + K  L  H   +H+  +
Sbjct: 84  QDKFCCQNCERVYKNKDSLGRHLKWECGKEPSFPCSRCPYKARYKADLLRHEKTRHLKRE 143

Query: 72  G 72
            
Sbjct: 144 A 144

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28573885|ref|NP_788313.1| longitudinals lacking, isoform I [Drosophila melanogaster] gi|73920872|sp|Q867Z4.1|LOLA4_DROME RecName: Full=Longitudinals lacking protein, isoforms F/I/K/T gi|28380922|gb|AAO41426.1| longitudinals lacking, isoform I [Drosophila melanogaster] gi|29539409|dbj|BAC67587.1| Lola protein isoform K [Drosophila melanogaster] gi|29539449|dbj|BAC67607.1| Lola protein isoform K [Drosophila melanogaster] gi|29539489|dbj|BAC67627.1| Lola protein isoform K [Drosophila melanogaster] gi|29539529|dbj|BAC67647.1| Lola protein isoform K [Drosophila melanogaster]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 12  EKRYLCDSCDRTYSNRSSLKRHMNYEC-GKLPAFPCTLCSYATKRKTSLASHYYRKH 67
           E RY+C  C + Y  +S+L+RH N EC GK P  PC  CSY  K++ +L  H  + H
Sbjct: 900 ESRYVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCSYKAKQRGNLGVHVRKHH 956

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195026446|ref|XP_001986258.1| GH20621 [Drosophila grimshawi] gi|193902258|gb|EDW01125.1| GH20621 [Drosophila grimshawi]

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 12   EKRYLCDSCDRTYSNRSSLKRHMNYEC-GKLPAFPCTLCSYATKRKTSLASHYYRKH 67
            E RY+C  C + Y  +S+L+RH N EC GK P  PC  C+Y  K++ +L  H  + H
Sbjct: 962  ESRYVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCTYKAKQRGNLGVHVRKHH 1018

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2467112|emb|CAA75228.1| Lola-like protein [Drosophila hydei]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 12  EKRYLCDSCDRTYSNRSSLKRHMNYEC-GKLPAFPCTLCSYATKRKTSLASHYYRKH 67
           E RY+C  C + Y  +S+L+RH N EC GK P  PC  C+Y  K++ +L  H  + H
Sbjct: 940 ESRYVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCTYKAKQRGNLGVHVRKHH 996

Source: Drosophila hydei

Species: Drosophila hydei

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195026424|ref|XP_001986253.1| GH20627 [Drosophila grimshawi] gi|193902253|gb|EDW01120.1| GH20627 [Drosophila grimshawi]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 32/56 (57%)

Query: 12  EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
           + +Y C+ C +TY  + SLKRH NYECG  P   C  C +  K K+ L  H  +KH
Sbjct: 253 DAKYACNVCGKTYKIKGSLKRHKNYECGVEPTLKCPHCPHKCKYKSDLRKHMNQKH 308

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552567|ref|NP_995806.1| longitudinals lacking, isoform W [Drosophila melanogaster] gi|29539421|dbj|BAC67593.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539461|dbj|BAC67613.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539501|dbj|BAC67633.1| Lola protein isoform Q [Drosophila melanogaster] gi|29539541|dbj|BAC67653.1| Lola protein isoform Q [Drosophila melanogaster] gi|45445597|gb|AAS64876.1| longitudinals lacking, isoform W [Drosophila melanogaster]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 14  RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA 73
           +Y C+ C +TY  + SLKRH NYECG  P   C  C +  K ++ L  H  +KH     A
Sbjct: 708 KYACNVCGKTYKIKGSLKRHKNYECGVEPNLKCPHCPHKCKYRSDLRKHMNQKHADSGEA 767

Query: 74  L 74
           +
Sbjct: 768 I 768

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.639	0.056	0.473	2e-08
UNIPROTKB|F1NUB6	186	ZNF513 "Uncharacterized protei	0.686	0.317	0.426	4.2e-08
ZFIN|ZDB-GENE-110914-101	247	si:dkey-82i20.5 "si:dkey-82i20	0.686	0.238	0.409	7.5e-08
ZFIN|ZDB-GENE-050227-10	338	zgc:113348 "zgc:113348" [Danio	0.779	0.198	0.376	7.7e-08
UNIPROTKB|Q9H963	129	ZNF702P "Putative zinc finger	0.779	0.519	0.391	8.7e-08
ZFIN|ZDB-GENE-080305-5	320	zgc:174275 "zgc:174275" [Danio	0.790	0.212	0.385	8.8e-08
UNIPROTKB|Q96IR2	970	ZNF845 "Zinc finger protein 84	0.779	0.069	0.405	1.1e-07
UNIPROTKB|P0CJ79	500	ZNF888 "Zinc finger protein 88	0.686	0.118	0.409	1.2e-07
UNIPROTKB|J3KNQ1	374	ZFP1 "Zinc finger protein 1 ho	0.686	0.157	0.409	1.2e-07
UNIPROTKB|F1MM01	280	F1MM01 "Uncharacterized protei	0.697	0.214	0.393	1.4e-07

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 141 (54.7 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/57 (47%), Positives = 35/57 (61%)

Query:    12 EKRYLCDSCDRTYSNRSSLKRHMNYECG-KLPAFPCTLCSYATKRKTSLASHYYRKH 67
             E RY+C  C + Y  +S+L+RH N ECG K P  PC  CSY  K++ +L  H  RKH
Sbjct:   900 ESRYVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCSYKAKQRGNLGVHV-RKH 955

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NUB6 ZNF513 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 26/61 (42%), Positives = 33/61 (54%)

Query:    10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
             +GEK Y C  CD    N ++LKRH     G  P F C+LCSY+  +  +L  H  R H G
Sbjct:    78 TGEKPYKCQLCDYACGNLANLKRHGRIHSGDKP-FQCSLCSYSCNQSMNLKRHMLR-HTG 135

Query:    70 E 70
             E
Sbjct:   136 E 136

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-110914-101 si:dkey-82i20.5 "si:dkey-82i20.5" [Danio rerio (taxid:7955)]

 Score = 126 (49.4 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 25/61 (40%), Positives = 35/61 (57%)

Query:    10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
             +GEK + C  C +++S  SSL  HM    G+ P F CT C  +  R +SL +H+ R H G
Sbjct:   145 TGEKPFACTQCGKSFSRSSSLNHHMRIHTGEKP-FTCTQCRKSFSRSSSL-NHHMRIHTG 202

Query:    70 E 70
             E
Sbjct:   203 E 203

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-050227-10 zgc:113348 "zgc:113348" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:     2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
             L  +    +GE  + C SC ++Y+ + +L+ HM +  G+ P F CTLC  +  RKT L  
Sbjct:    75 LSRHMKVHTGEGLFTCISCGKSYTEKGALESHMRFHTGEKP-FACTLCGQSYTRKTDLKR 133

Query:    62 HYYRKHVGE 70
             H  R H GE
Sbjct:   134 HM-RIHSGE 141

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q9H963 ZNF702P "Putative zinc finger protein 702" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 27/69 (39%), Positives = 36/69 (52%)

Query:     2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
             L Y+    +GEK Y C+ C +T+S +SSL  H     G+ P   C  C     +K  LAS
Sbjct:    49 LAYHHRCHTGEKPYKCNQCGKTFSYKSSLVIHKAIHTGEKP-HKCNECGKVFNQKAYLAS 107

Query:    62 HYYRKHVGE 70
             H+ R H GE
Sbjct:   108 HH-RLHTGE 115

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-080305-5 zgc:174275 "zgc:174275" [Danio rerio (taxid:7955)]

 Score = 128 (50.1 bits), Expect = 8.8e-08, P = 8.8e-08
 Identities = 27/70 (38%), Positives = 38/70 (54%)

Query:     1 MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLA 60
             +L Y+ S  +GEK + C  C ++++  SSL RHM    G+ P F CT C  +  R + L 
Sbjct:   163 LLNYHMSIHTGEKPFKCTQCGKSFTCSSSLNRHMRIHTGEKP-FACTQCGKSFLRSSHLN 221

Query:    61 SHYYRKHVGE 70
              H  R H GE
Sbjct:   222 RHM-RIHTGE 230

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q96IR2 ZNF845 "Zinc finger protein 845" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query:     2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
             L Y+    +GEK Y C+ CD+ +S +S+L+RH     G+ P + C  CS    RK+SL  
Sbjct:   342 LVYHRRLHTGEKPYKCEECDKAFSFKSNLERHRKIHTGEKP-YKCNECSRTFSRKSSLTR 400

Query:    62 HYYRKHVGE 70
             H  R H GE
Sbjct:   401 HR-RLHTGE 408

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P0CJ79 ZNF888 "Zinc finger protein 888" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query:    10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
             +GEK Y C  CD+ +S +S L+RH     G+ P + C +C  A +R + LA H+ R H G
Sbjct:   328 TGEKPYKCKECDKVFSRKSHLERHRRIHTGEKP-YKCKVCDKAFRRDSRLAYHH-RLHTG 385

Query:    70 E 70
             E
Sbjct:   386 E 386

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J3KNQ1 ZFP1 "Zinc finger protein 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query:    10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
             +GEK Y C  C +T+S RS+L+ H+    G+ P + C+ C  A  RK+ L+ H  R H+G
Sbjct:   314 TGEKPYECTECGKTFSQRSTLRLHLRIHTGEKP-YECSECGKAFSRKSRLSVHQ-RVHIG 371

Query:    70 E 70
             E
Sbjct:   372 E 372

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1MM01 F1MM01 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query:    10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
             +GEK ++C  C + +S RS L  H     G+ P + C+ C  A  RK SL  H  R H G
Sbjct:    24 TGEKPFMCAECGKAFSRRSHLTEHQRSHTGEKPYYECSECGKAFSRKDSLVQHQ-RVHTG 82

Query:    70 E 70
             E
Sbjct:    83 E 83

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
KOG2462|consensus	279		99.85
KOG2462|consensus	279		99.83
KOG3576|consensus	267		99.62
KOG3623|consensus	1007		99.49
KOG1074|consensus	958		99.42
KOG3623|consensus	1007		99.28
PHA02768	55	hypothetical protein; Provisional	99.25
PHA00733	128	hypothetical protein	99.25
KOG3576|consensus	267		99.1
KOG1074|consensus	958		99.06
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.97
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.96
KOG3993|consensus	500		98.81
PHA00616	44	hypothetical protein	98.68
PHA00616	44	hypothetical protein	98.63
PHA00732	79	hypothetical protein	98.58
KOG3608|consensus	467		98.52
KOG3608|consensus	467		98.49
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.35
PHA02768	55	hypothetical protein; Provisional	98.29
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.23
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.22
PHA00733	128	hypothetical protein	98.17
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.12
PLN03086	567	PRLI-interacting factor K; Provisional	98.05
PLN03086	567	PRLI-interacting factor K; Provisional	98.02
KOG3993|consensus	500		98.01
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.97
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.95
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.84
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.84
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.77
smart00355	26	ZnF_C2H2 zinc finger.	97.64
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.6
PRK04860	160	hypothetical protein; Provisional	97.56
smart00355	26	ZnF_C2H2 zinc finger.	97.48
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.47
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.32
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.2
PHA00732	79	hypothetical protein	97.16
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.13
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.59
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.59
KOG2893|consensus	341		95.78
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.62
KOG1146|consensus	1406		94.96
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.72
PRK04860	160	hypothetical protein; Provisional	94.35
KOG2186|consensus	276		94.28
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.27
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.18
COG5048	467	FOG: Zn-finger [General function prediction only]	93.78
COG1592	166	Rubrerythrin [Energy production and conversion]	92.23
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	91.29
COG4049	65	Uncharacterized protein containing archaeal-type C	91.11
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	90.88
PRK06266	178	transcription initiation factor E subunit alpha; V	90.44
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	89.45
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	89.17
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.77
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	88.73
smart00531	147	TFIIE Transcription initiation factor IIE.	88.65
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	88.33
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	86.6
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	86.55
KOG1146|consensus	1406		86.02
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	85.99
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	85.79
COG5189	423	SFP1 Putative transcriptional repressor regulating	85.09
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	84.44
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	84.33
COG5048	467	FOG: Zn-finger [General function prediction only]	83.18
PF05191	36	ADK_lid: Adenylate kinase, active site lid; InterP	82.84
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	82.82
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	82.52
KOG4167|consensus	907		81.79
COG3357	97	Predicted transcriptional regulator containing an	80.82
KOG4167|consensus	907		80.49
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	80.26

>KOG2462|consensus

Probab=99.85  E-value=5.9e-22  Score=107.85  Aligned_cols=70  Identities=20%  Similarity=0.379  Sum_probs=57.9

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |++|+++|+  -++.|.+||+.|+..|.|+.|+|+|+|++| |.|..|++.|..+++|..|+++|.+.|+..+
T Consensus       177 LkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKP-F~C~hC~kAFADRSNLRAHmQTHS~~K~~qC  246 (279)
T KOG2462|consen  177 LKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKP-FSCPHCGKAFADRSNLRAHMQTHSDVKKHQC  246 (279)
T ss_pred             HhhHhhccC--CCcccccccccccchHHhhcccccccCCCC-ccCCcccchhcchHHHHHHHHhhcCCccccC
Confidence            567777776  578888888888888888888888888888 8888888888888888888888888886544

>KOG2462|consensus

Probab=99.83  E-value=3e-21  Score=105.14  Aligned_cols=64  Identities=25%  Similarity=0.485  Sum_probs=61.1

Q ss_pred             CccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHH
Q psy4268           1 MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYR   65 (86)
Q Consensus         1 ~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~   65 (86)
                      +|+.|+++|+|||||.|..|+++|..+++|..|+++|.+.++ |.|..|+|.|...+.|.+|...
T Consensus       202 LLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~-~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  202 LLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKK-HQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             HhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCcc-ccCcchhhHHHHHHHHHHhhhh
Confidence            589999999999999999999999999999999999999999 9999999999999999999743

>KOG3576|consensus

Probab=99.62  E-value=3.1e-17  Score=86.66  Aligned_cols=69  Identities=33%  Similarity=0.577  Sum_probs=65.0

Q ss_pred             CccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCC
Q psy4268           1 MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus         1 ~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      ||.+|++-|+..+.+.|..||++|....+|.+|.++|+|..| |+|..|++.|.+..+|..|.+..+|..
T Consensus       132 mlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrp-ykc~~c~kaftqrcsleshl~kvhgv~  200 (267)
T KOG3576|consen  132 MLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP-YKCSLCEKAFTQRCSLESHLKKVHGVQ  200 (267)
T ss_pred             HHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccc-cchhhhhHHHHhhccHHHHHHHHcCch
Confidence            688999999999999999999999999999999999999999 999999999999999999998777654

>KOG3623|consensus

Probab=99.49  E-value=5.1e-15  Score=89.91  Aligned_cols=61  Identities=25%  Similarity=0.523  Sum_probs=53.7

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHH
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHY   63 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~   63 (86)
                      |.+|.=-|+|.+||.|.+|.++|..+..|..|.|.|.|++| |.|..|+|.|..+-+...||
T Consensus       910 LaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKP-fQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  910 LARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKP-FQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             HHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCc-chhhhhhhhcccccchHhhh
Confidence            45676678999999999999999999999999999999999 99999999999888888887

>KOG1074|consensus

Probab=99.42  E-value=1.2e-14  Score=89.09  Aligned_cols=68  Identities=25%  Similarity=0.583  Sum_probs=60.5

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCC----CCCccCC---CCccccCChhHHHHHHHHhccCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK----LPAFPCT---LCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~----~~~~~c~---~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |++|.++|+||+||+|++|+++|..+.+|..|+.+|...    .. +.|.   +|.+.|...-.|+.|++.|.++.
T Consensus       621 LqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q-~ScP~~~ic~~kftn~V~lpQhIriH~~~~  695 (958)
T KOG1074|consen  621 LQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQ-FSCPSTFICQKKFTNAVTLPQHIRIHLGGQ  695 (958)
T ss_pred             hhhhhhcccCcCccccccccchhccccchhhcccccccCcccccc-ccCCchhhhcccccccccccceEEeecCCC
Confidence            789999999999999999999999999999999888764    34 6788   89999999999999998888543

>KOG3623|consensus

Probab=99.28  E-value=1.3e-12  Score=79.88  Aligned_cols=65  Identities=29%  Similarity=0.547  Sum_probs=60.5

Q ss_pred             CCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        10 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      +.+..|.|..|.+.|-..+.|.+|.--|+|.+| |.|.+|.|.|.....|..|.|+|.|+|++.+.
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRP-yqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCd  954 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKYEHSGQRP-YQCIICKKAFKHKHHLTEHKRLHSGEKPFQCD  954 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhhhhcCCCC-cccchhhHhhhhhhhhhhhhhhccCCCcchhh
Confidence            345689999999999999999999988999999 99999999999999999999999999998763

>PHA02768 hypothetical protein; Provisional

Probab=99.25  E-value=4e-12  Score=54.56  Aligned_cols=42  Identities=21%  Similarity=0.428  Sum_probs=37.8

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHH
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSL   59 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l   59 (86)
                      |.|..||+.|+....|..|++.|.  ++ ++|..|++.|.+.+.|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~-~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TN-LKLSNCKRISLRTGEY   47 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--Cc-ccCCcccceeccccee
Confidence            789999999999999999999988  56 9999999999877654

>PHA00733 hypothetical protein

Probab=99.25  E-value=2.3e-11  Score=61.27  Aligned_cols=61  Identities=25%  Similarity=0.500  Sum_probs=50.9

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      .|+..+ +.++|.|..|++.|.....|..|++.+  ..+ |.|..|++.|.....|..|+...|+
T Consensus        64 ~~~~~~-~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~-~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         64 KLLTSK-AVSPYVCPLCLMPFSSSVSLKQHIRYT--EHS-KVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             hhcccC-CCCCccCCCCCCcCCCHHHHHHHHhcC--CcC-ccCCCCCCccCCHHHHHHHHHHhcC
Confidence            344444 588999999999999999999999865  346 8999999999999999999876654

>KOG3576|consensus

Probab=99.10  E-value=2.5e-11  Score=64.67  Aligned_cols=66  Identities=17%  Similarity=0.311  Sum_probs=59.6

Q ss_pred             CCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCCC
Q psy4268          10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALPP   76 (86)
Q Consensus        10 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~~   76 (86)
                      ++...+.|.+|++.|.....|.+|++.|...+. +-|..||+.|..-..|.+|.++|+|.+++.+..
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr-~lct~cgkgfndtfdlkrh~rthtgvrpykc~~  178 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKR-HLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSL  178 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHH-HHHhhccCcccchhhhhhhhccccCccccchhh
Confidence            445669999999999999999999999988888 899999999999999999999999999987643

>KOG1074|consensus

Probab=99.06  E-value=1.5e-10  Score=71.81  Aligned_cols=59  Identities=24%  Similarity=0.473  Sum_probs=54.7

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ..|.+|++.|.....|+.|+++|++.++ |.|..|++.|....+|+.|+.+|....+...
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KP-F~C~fC~~aFttrgnLKvHMgtH~w~q~~sr  938 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKP-FFCHFCEEAFTTRGNLKVHMGTHMWVQPPSR  938 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCC-ccchhhhhhhhhhhhhhhhhccccccCCCcc
Confidence            7899999999999999999999999999 9999999999999999999998887665444

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.97  E-value=3.5e-11  Score=44.66  Aligned_cols=23  Identities=30%  Similarity=0.785  Sum_probs=11.6

Q ss_pred             HHHHHHhhCCCCCccCCCCccccC
Q psy4268          31 KRHMNYECGKLPAFPCTLCSYATK   54 (86)
Q Consensus        31 ~~h~~~~~~~~~~~~c~~c~~~f~   54 (86)
                      ..|+++|+++++ |.|..|++.|.
T Consensus         3 ~~H~~~H~~~k~-~~C~~C~k~F~   25 (26)
T PF13465_consen    3 RRHMRTHTGEKP-YKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHSSSSS-EEESSSSEEES
T ss_pred             HHHhhhcCCCCC-CCCCCCcCeeC
Confidence            345555555555 55555555443

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.96  E-value=7.4e-10  Score=41.05  Aligned_cols=24  Identities=33%  Similarity=0.717  Sum_probs=22.1

Q ss_pred             ccccccCCCCCCceeccccccccc
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYS   25 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~   25 (86)
                      |.+|++.|+|++||.|..|++.|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            578999999999999999999985

...

>KOG3993|consensus

Probab=98.81  E-value=1.4e-09  Score=63.33  Aligned_cols=70  Identities=21%  Similarity=0.416  Sum_probs=56.5

Q ss_pred             CccccccCCCCCCceecccccccccChHHHHHHHHHhhCCC--------C------------------------CccCCC
Q psy4268           1 MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKL--------P------------------------AFPCTL   48 (86)
Q Consensus         1 ~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~--------~------------------------~~~c~~   48 (86)
                      ||..|+........|.|..|++.|+...||..|.++|....        +                        .|.|..
T Consensus       282 ~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~  361 (500)
T KOG3993|consen  282 ALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHT  361 (500)
T ss_pred             HHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHH
Confidence            45667666666678999999999999999999999875321        1                        167999


Q ss_pred             CccccCChhHHHHHHHHhccCC
Q psy4268          49 CSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        49 c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |+++|.+...|.+|+..|+...
T Consensus       362 C~KkFrRqAYLrKHqlthq~~~  383 (500)
T KOG3993|consen  362 CGKKFRRQAYLRKHQLTHQRAP  383 (500)
T ss_pred             hhhhhHHHHHHHHhHHhhhccc
Confidence            9999999999999987777543

>PHA00616 hypothetical protein

Probab=98.68  E-value=1.2e-08  Score=41.93  Aligned_cols=33  Identities=12%  Similarity=0.290  Sum_probs=19.9

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      ||.|..||+.|...+.+..|++.+++.++ +.|.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~-~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK-LTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCc-ccee
Confidence            35566666666666666666666666655 5544

>PHA00616 hypothetical protein

Probab=98.63  E-value=2.5e-08  Score=41.04  Aligned_cols=31  Identities=19%  Similarity=0.398  Sum_probs=28.4

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |.|..||+.|.....+..|++.++++++...
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            8999999999999999999999999987544

>PHA00732 hypothetical protein

Probab=98.58  E-value=4.5e-08  Score=45.48  Aligned_cols=43  Identities=26%  Similarity=0.524  Sum_probs=35.9

Q ss_pred             ceecccccccccChHHHHHHHHH-hhCCCCCccCCCCccccCChhHHHHHH
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNY-ECGKLPAFPCTLCSYATKRKTSLASHY   63 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~~~~~~c~~c~~~f~~~~~l~~h~   63 (86)
                      ||.|..|++.|.....|..|++. |.   + +.|..|++.|.+   +..|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~-~~C~~CgKsF~~---l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---L-TKCPVCNKSYRR---LNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---C-CccCCCCCEeCC---hhhhh
Confidence            57899999999999999999974 43   4 789999999983   56665

>KOG3608|consensus

Probab=98.52  E-value=1.5e-08  Score=58.19  Aligned_cols=66  Identities=24%  Similarity=0.368  Sum_probs=48.1

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHH--hhCCCCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNY--ECGKLPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |..|++.|+++|-..|..||.-|.....|-.|.+-  .....+ |.|..|.|.|.....|..|+..|..
T Consensus       195 LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~-fqC~~C~KrFaTeklL~~Hv~rHvn  262 (467)
T KOG3608|consen  195 LREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNS-FQCAQCFKRFATEKLLKSHVVRHVN  262 (467)
T ss_pred             HHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCc-hHHHHHHHHHhHHHHHHHHHHHhhh
Confidence            66788999999998888888888888888877753  223345 7777777777776666666655543

>KOG3608|consensus

Probab=98.49  E-value=1.3e-07  Score=54.46  Aligned_cols=64  Identities=27%  Similarity=0.577  Sum_probs=47.5

Q ss_pred             cccccc-CCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC--CccccCChhHHHHHHHHhc
Q psy4268           2 LGYYFS-APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKH   67 (86)
Q Consensus         2 l~~h~~-~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~   67 (86)
                      |..|++ .|+..||++|..|.+.+...+.|..|..+|. ... |.|..  |..+|.+...+.+|++.++
T Consensus       279 L~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~-y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  279 LTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTV-YQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             HHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccc-eecCCCCCcHHHHHHHHHHHHHHHhc
Confidence            345655 5777888888888888888888888888776 333 77765  7777777777777776666

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.35  E-value=4.6e-07  Score=32.32  Aligned_cols=22  Identities=27%  Similarity=0.685  Sum_probs=12.6

Q ss_pred             ccCCCCccccCChhHHHHHHHH
Q psy4268          44 FPCTLCSYATKRKTSLASHYYR   65 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~   65 (86)
                      |.|..|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            3455566666666666666544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA02768 hypothetical protein; Provisional

Probab=98.29  E-value=1.3e-06  Score=37.68  Aligned_cols=24  Identities=17%  Similarity=0.602  Sum_probs=23.4

Q ss_pred             ccCCCCccccCChhHHHHHHHHhc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      |.|..||+.|.+..+|..|++.|+
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC
Confidence            899999999999999999999998

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.23  E-value=1.6e-06  Score=30.89  Aligned_cols=23  Identities=43%  Similarity=0.950  Sum_probs=21.0

Q ss_pred             eecccccccccChHHHHHHHHHh
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      |.|..|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            68999999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.22  E-value=5.9e-06  Score=35.71  Aligned_cols=51  Identities=24%  Similarity=0.434  Sum_probs=38.4

Q ss_pred             ceecccccccccChHHHHHHHHH-hhCC-CCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNY-ECGK-LPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~-~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      .|.|..|++ ......|..|... |... +. +.|+.|...+.  .+|..|+..+++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~-v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKN-VVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCC-ccCCCchhhhh--hHHHHHHHHhcC
Confidence            478999999 5667889999775 5544 45 89999987655  378889877653

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00733 hypothetical protein

Probab=98.17  E-value=1.4e-06  Score=44.02  Aligned_cols=55  Identities=20%  Similarity=0.251  Sum_probs=42.3

Q ss_pred             CCCceecccccccccChHHHHHHH--H---HhhCCCCCccCCCCccccCChhHHHHHHHHh
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHM--N---YECGKLPAFPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~--~---~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      ..+++.|.+|...|.....+..+.  .   .+.+..+ |.|..|++.|.....|..|++.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kP-y~C~~Cgk~Fss~s~L~~H~r~h   96 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSP-YVCPLCLMPFSSSVSLKQHIRYT   96 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCC-ccCCCCCCcCCCHHHHHHHHhcC
Confidence            467899999988777766666551  1   2234567 99999999999999999998754

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.12  E-value=3.6e-06  Score=29.97  Aligned_cols=23  Identities=26%  Similarity=0.657  Sum_probs=12.4

Q ss_pred             ccCCCCccccCChhHHHHHHHHh
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      |.|..|++.|.....|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            34566666666666666665544

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.05  E-value=4.5e-06  Score=51.21  Aligned_cols=38  Identities=16%  Similarity=0.479  Sum_probs=16.4

Q ss_pred             CceecccccccccChHHHHHHHHHhhCCCCCccCCCCcccc
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYAT   53 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f   53 (86)
                      +++.|. |++.+ ....|..|...+.+.++ +.|..|++.|
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kp-i~C~fC~~~v  514 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRL-ITCRFCGDMV  514 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhccCCCCc-eeCCCCCCcc
Confidence            344444 44322 33444444444444444 4444444444

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.02  E-value=8.4e-06  Score=50.05  Aligned_cols=63  Identities=17%  Similarity=0.335  Sum_probs=49.9

Q ss_pred             ccccccCCCCCCceeccccccccc----------ChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhc
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYS----------NRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~----------~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      |..|+..|.+.+++.|..|+..+.          ....|..|... .|.++ +.|..|++.+.... +..|+-..|
T Consensus       492 L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-CG~rt-~~C~~Cgk~Vrlrd-m~~H~~~~h  564 (567)
T PLN03086        492 MVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-CGSRT-APCDSCGRSVMLKE-MDIHQIAVH  564 (567)
T ss_pred             HHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh-cCCcc-eEccccCCeeeehh-HHHHHHHhh
Confidence            456888899999999999998884          23578899887 48888 99999999887764 677765444

>KOG3993|consensus

Probab=98.01  E-value=6e-07  Score=52.80  Aligned_cols=59  Identities=22%  Similarity=0.430  Sum_probs=49.8

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      .|.|..|...|.....|.+|.-.-..... |+|..|+|.|.-..+|..|++.|--+....
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vE-YrCPEC~KVFsCPANLASHRRWHKPR~eaa  325 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRIVHVE-YRCPECDKVFSCPANLASHRRWHKPRPEAA  325 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCeeEEee-ecCCcccccccCchhhhhhhcccCCchhhh
Confidence            48999999999999999999755555556 999999999999999999998887654433

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.97  E-value=5.8e-06  Score=30.54  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=11.7

Q ss_pred             ccCCCCccccCChhHHHHHHHH
Q psy4268          44 FPCTLCSYATKRKTSLASHYYR   65 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~   65 (86)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCccCCccCChhHHHHHhHH
Confidence            4555555555555555555433

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.95  E-value=4.1e-06  Score=30.96  Aligned_cols=25  Identities=36%  Similarity=0.878  Sum_probs=22.3

Q ss_pred             ceecccccccccChHHHHHHHHHhh
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~   38 (86)
                      +|.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5899999999999999999997653

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.84  E-value=2.7e-05  Score=27.58  Aligned_cols=23  Identities=26%  Similarity=0.819  Sum_probs=19.1

Q ss_pred             eecccccccccChHHHHHHHHHh
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      |.|..|++.|.....|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            68999999999999999999865

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.84  E-value=2.9e-05  Score=32.85  Aligned_cols=32  Identities=22%  Similarity=0.548  Sum_probs=19.5

Q ss_pred             CCCCccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268          40 KLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus        40 ~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      ..| -.|+.|+..+.+..+|.+|+...|+.+++
T Consensus        22 ~~P-atCP~C~a~~~~srnLrRHle~~H~~k~~   53 (54)
T PF09237_consen   22 EQP-ATCPICGAVIRQSRNLRRHLEIRHFKKPG   53 (54)
T ss_dssp             S---EE-TTT--EESSHHHHHHHHHHHTTTS--
T ss_pred             CCC-CCCCcchhhccchhhHHHHHHHHhcccCC
Confidence            345 67888888888888888888777777653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.77  E-value=7.8e-06  Score=46.85  Aligned_cols=51  Identities=31%  Similarity=0.617  Sum_probs=41.8

Q ss_pred             CCceeccc--ccccccChHHHHHHHHH-hh------------------CCCCCccCCCCccccCChhHHHHHH
Q psy4268          12 EKRYLCDS--CDRTYSNRSSLKRHMNY-EC------------------GKLPAFPCTLCSYATKRKTSLASHY   63 (86)
Q Consensus        12 ~~~~~c~~--c~~~~~~~~~l~~h~~~-~~------------------~~~~~~~c~~c~~~f~~~~~l~~h~   63 (86)
                      +|||+|.+  |.+.|...-.|..|+.- |-                  -.+| |.|..|+|.+.....|..|+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KP-YrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKP-YRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCc-eeccccchhhccCccceecc
Confidence            59999998  99999999999988752 20                  0167 99999999999988888885

>smart00355 ZnF_C2H2 zinc finger

Probab=97.64  E-value=8.5e-05  Score=26.60  Aligned_cols=20  Identities=30%  Similarity=0.537  Sum_probs=11.4

Q ss_pred             cCCCCccccCChhHHHHHHH
Q psy4268          45 PCTLCSYATKRKTSLASHYY   64 (86)
Q Consensus        45 ~c~~c~~~f~~~~~l~~h~~   64 (86)
                      .|..|++.|.....+..|++
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHH
Confidence            45555556655555555554

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.60  E-value=0.0002  Score=30.34  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=24.3

Q ss_pred             CCCCCceecccccccccChHHHHHHHHHhhCCCC
Q psy4268           9 PSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLP   42 (86)
Q Consensus         9 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   42 (86)
                      +..+.|..|.+|+..+.+..+|.+|+....+.++
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            4467899999999999999999999988777665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=97.56  E-value=8.3e-05  Score=39.06  Aligned_cols=39  Identities=23%  Similarity=0.525  Sum_probs=32.5

Q ss_pred             CceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCCh
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRK   56 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~   56 (86)
                      -+|.|. |+.   ....+..|.+++.+.++ |.|..|++.|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~-YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAV-YRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCcc-EECCCCCceeEEe
Confidence            369997 886   56778899999999999 9999999887644

>smart00355 ZnF_C2H2 zinc finger

Probab=97.48  E-value=0.00016  Score=25.80  Aligned_cols=24  Identities=33%  Similarity=0.826  Sum_probs=21.0

Q ss_pred             eecccccccccChHHHHHHHHHhh
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~   38 (86)
                      +.|..|++.|.....+..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            579999999999999999998654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.47  E-value=0.00012  Score=35.08  Aligned_cols=24  Identities=29%  Similarity=0.689  Sum_probs=20.5

Q ss_pred             ccCCCCccccCChhHHHHHHHHhc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      +.|..|++.|.....|..|++.+.
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCccCCCCcCHHHHHHHHcCcc
Confidence            789999999999999999997653

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.32  E-value=0.00022  Score=25.66  Aligned_cols=21  Identities=33%  Similarity=1.053  Sum_probs=11.3

Q ss_pred             eecccccccccChHHHHHHHH
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMN   35 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~   35 (86)
                      |.|.+|+..|.....+..|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            345555555555555555554

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.20  E-value=0.0005  Score=24.49  Aligned_cols=22  Identities=45%  Similarity=0.886  Sum_probs=9.5

Q ss_pred             cCCCCccccCChhHHHHHHHHhc
Q psy4268          45 PCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        45 ~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      .|..|..... ...|..|++.++
T Consensus         2 ~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    2 KCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             E-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCcCC-HHHHHHHHHhhC
Confidence            4555554444 445555554443

>PHA00732 hypothetical protein

Probab=97.16  E-value=0.00062  Score=31.72  Aligned_cols=24  Identities=29%  Similarity=0.647  Sum_probs=21.5

Q ss_pred             ccCCCCccccCChhHHHHHHHH-hc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYR-KH   67 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~-~~   67 (86)
                      |.|..|++.|.+...|..|++. |.
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~   26 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHT   26 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccC
Confidence            8899999999999999999874 44

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.13  E-value=0.00031  Score=25.24  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=19.5

Q ss_pred             ccCCCCccccCChhHHHHHHHH
Q psy4268          44 FPCTLCSYATKRKTSLASHYYR   65 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~   65 (86)
                      |.|..|++.|.....+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            5799999999999999999854

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.59  E-value=0.00063  Score=25.00  Aligned_cols=21  Identities=43%  Similarity=1.092  Sum_probs=12.2

Q ss_pred             eecccccccccChHHHHHHHH
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMN   35 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~   35 (86)
                      |.|..|++.|.....+..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            456666666666666555544

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.59  E-value=0.0034  Score=22.71  Aligned_cols=20  Identities=25%  Similarity=0.574  Sum_probs=13.1

Q ss_pred             ccCCCCccccCChhHHHHHHH
Q psy4268          44 FPCTLCSYATKRKTSLASHYY   64 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~   64 (86)
                      ..|..||+.| ....|..|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            4677788888 4445777753

>KOG2893|consensus

Probab=95.78  E-value=0.0022  Score=35.84  Aligned_cols=45  Identities=24%  Similarity=0.522  Sum_probs=33.2

Q ss_pred             CCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHH
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH   62 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h   62 (86)
                      .|+ .|..|+.-|.....|++|++.    +- |+|.+|.+..-+-..|..|
T Consensus         9 ~kp-wcwycnrefddekiliqhqka----kh-fkchichkkl~sgpglsih   53 (341)
T KOG2893|consen    9 DKP-WCWYCNREFDDEKILIQHQKA----KH-FKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             CCc-eeeecccccchhhhhhhhhhh----cc-ceeeeehhhhccCCCceee
Confidence            344 577899999999999999875    34 9999998765544444444

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.62  E-value=0.016  Score=22.27  Aligned_cols=22  Identities=23%  Similarity=0.754  Sum_probs=14.2

Q ss_pred             ceecccccccccChHHHHHHHH
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMN   35 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~   35 (86)
                      +|.|.+|+..|.....+..|..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4667777777766666666654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1146|consensus

Probab=94.96  E-value=0.025  Score=38.61  Aligned_cols=57  Identities=28%  Similarity=0.511  Sum_probs=46.1

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhh-------------------------CCCCCccCCCCccccCChhHHHHH
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYEC-------------------------GKLPAFPCTLCSYATKRKTSLASH   62 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~-------------------------~~~~~~~c~~c~~~f~~~~~l~~h   62 (86)
                      .++..+.+.|..|+..|.....|..|++..+                         +.++ |.|..|...+....+|.+|
T Consensus       459 L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p-~~C~~C~~stttng~Lsih  537 (1406)
T KOG1146|consen  459 LHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP-YPCRACNYSTTTNGNLSIH  537 (1406)
T ss_pred             eecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc-ccceeeeeeeecchHHHHH
Confidence            4566688999999999999999999998711                         1135 7899999999998889888


Q ss_pred             HHH
Q psy4268          63 YYR   65 (86)
Q Consensus        63 ~~~   65 (86)
                      +..
T Consensus       538 lqS  540 (1406)
T KOG1146|consen  538 LQS  540 (1406)
T ss_pred             HHH
Confidence            743

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.72  E-value=0.028  Score=21.66  Aligned_cols=24  Identities=29%  Similarity=0.960  Sum_probs=16.6

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCcc
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSY   51 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~   51 (86)
                      |.|.+||..+....            .+ +.|+.|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~~-~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------AP-WVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CC-CcCcCCCC
Confidence            68888987653322            45 78998874

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK04860 hypothetical protein; Provisional

Probab=94.35  E-value=0.0092  Score=31.53  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             ccccccCCCCCCceecccccccccC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSN   26 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~   26 (86)
                      +.+|.++|.|+++|.|..|+..|..
T Consensus       131 ~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        131 VRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             HHHHHHHhcCCccEECCCCCceeEE
Confidence            4578889999999999999987754

>KOG2186|consensus

Probab=94.28  E-value=0.033  Score=31.51  Aligned_cols=49  Identities=20%  Similarity=0.423  Sum_probs=35.3

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHh
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      -|.|.+||....- ..+..|+..-++ .- |.|..|+..|.. .....|...-
T Consensus         3 ~FtCnvCgEsvKK-p~vekH~srCrn-~~-fSCIDC~k~F~~-~sYknH~kCI   51 (276)
T KOG2186|consen    3 FFTCNVCGESVKK-PQVEKHMSRCRN-AY-FSCIDCGKTFER-VSYKNHTKCI   51 (276)
T ss_pred             EEehhhhhhhccc-cchHHHHHhccC-Ce-eEEeeccccccc-chhhhhhhhc
Confidence            3789999976543 556778866555 44 999999999998 4567776433

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.27  E-value=0.083  Score=25.06  Aligned_cols=25  Identities=28%  Similarity=0.757  Sum_probs=21.7

Q ss_pred             ceecccccccccChHHHHHHHHHhh
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~   38 (86)
                      .+.|..|++.|.....|..|++.+.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCcc
Confidence            5899999999999999999998753

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.18  E-value=0.039  Score=27.33  Aligned_cols=30  Identities=27%  Similarity=0.650  Sum_probs=23.2

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCCh
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRK   56 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~   56 (86)
                      ..|..||..|           .-.++.| ..|+.||..|.-.
T Consensus        10 R~Cp~CG~kF-----------YDLnk~P-ivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKF-----------YDLNKDP-IVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchh-----------ccCCCCC-ccCCCCCCccCcc
Confidence            5899999888           2344567 8899999888766

The function of members of this family is unknown.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.78  E-value=0.015  Score=34.43  Aligned_cols=60  Identities=25%  Similarity=0.474  Sum_probs=49.9

Q ss_pred             CceecccccccccChHHHHHHHH--HhhCC--CCCccCC--CCccccCChhHHHHHHHHhccCCCCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMN--YECGK--LPAFPCT--LCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~--~~~~~--~~~~~c~--~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      .++.|..|...|.....+..|.+  .|.++  ++ +.|.  .|++.|.+...+..|...+.+.....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKP-FSCPYSLCGKLFSRNDALKRHILLHTSISPAK  353 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCc-eeeeccCCCccccccccccCCcccccCCCccc
Confidence            36788889999999999999998  78888  78 8998  79999999998888887777665443

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=92.23  E-value=0.12  Score=27.63  Aligned_cols=23  Identities=30%  Similarity=0.843  Sum_probs=17.6

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCCCCc
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCS   50 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~   50 (86)
                      -|.|.+||+.             +.|..| ..|+.||
T Consensus       134 ~~vC~vCGy~-------------~~ge~P-~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYT-------------HEGEAP-EVCPICG  156 (166)
T ss_pred             EEEcCCCCCc-------------ccCCCC-CcCCCCC
Confidence            6899999864             345566 8899998

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=91.29  E-value=0.23  Score=26.29  Aligned_cols=36  Identities=14%  Similarity=0.444  Sum_probs=26.1

Q ss_pred             CCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccC
Q psy4268           9 PSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATK   54 (86)
Q Consensus         9 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~   54 (86)
                      .....-|.|..|+..|+....+.         .. |.|+.||....
T Consensus       104 e~~~~~Y~Cp~c~~r~tf~eA~~---------~~-F~Cp~Cg~~L~  139 (158)
T TIGR00373       104 ETNNMFFICPNMCVRFTFNEAME---------LN-FTCPRCGAMLD  139 (158)
T ss_pred             ccCCCeEECCCCCcEeeHHHHHH---------cC-CcCCCCCCEee
Confidence            34566799999998887766553         24 99999987544

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=91.11  E-value=0.16  Score=22.03  Aligned_cols=29  Identities=28%  Similarity=0.555  Sum_probs=21.5

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHH
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNY   36 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~   36 (86)
                      ...|+.-+.|..|+..|-...++.+|...
T Consensus        11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             ccCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            34577778888888888877777777653

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=90.88  E-value=0.21  Score=25.43  Aligned_cols=32  Identities=6%  Similarity=0.176  Sum_probs=23.6

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhH
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTS   58 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~   58 (86)
                      ..|..||..|.           -.++.| ..|+.||..|.....
T Consensus        10 r~Cp~cg~kFY-----------DLnk~p-~vcP~cg~~~~~~~~   41 (129)
T TIGR02300        10 RICPNTGSKFY-----------DLNRRP-AVSPYTGEQFPPEEA   41 (129)
T ss_pred             ccCCCcCcccc-----------ccCCCC-ccCCCcCCccCcchh
Confidence            58999998882           344556 899999988766533

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=90.44  E-value=0.24  Score=26.75  Aligned_cols=34  Identities=15%  Similarity=0.552  Sum_probs=25.1

Q ss_pred             CCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccC
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATK   54 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~   54 (86)
                      ...-|.|..|+..|+....+.         .. |.|+.||....
T Consensus       114 ~~~~Y~Cp~C~~rytf~eA~~---------~~-F~Cp~Cg~~L~  147 (178)
T PRK06266        114 NNMFFFCPNCHIRFTFDEAME---------YG-FRCPQCGEMLE  147 (178)
T ss_pred             CCCEEECCCCCcEEeHHHHhh---------cC-CcCCCCCCCCe
Confidence            456799999998887765542         24 99999997654

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=89.45  E-value=0.32  Score=18.86  Aligned_cols=25  Identities=20%  Similarity=0.652  Sum_probs=16.1

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCCCCcc
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSY   51 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~   51 (86)
                      .|.|..||+.+...            ..| ..|+.|+.
T Consensus         2 ~~~C~~CG~i~~g~------------~~p-~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE------------EAP-EKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC------------cCC-CcCcCCCC
Confidence            47888998654221            134 68888875

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=89.17  E-value=0.45  Score=23.40  Aligned_cols=25  Identities=28%  Similarity=0.797  Sum_probs=22.0

Q ss_pred             ccC----CCCccccCChhHHHHHHHHhcc
Q psy4268          44 FPC----TLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c----~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|    ..|+....+...+.+|++..||
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            789    8899999999999999988775

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.77  E-value=0.062  Score=29.77  Aligned_cols=45  Identities=20%  Similarity=0.578  Sum_probs=27.7

Q ss_pred             CCceecccccccccChHHHHHHHHH---h-------hCCCCC----ccCCCCccccCCh
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNY---E-------CGKLPA----FPCTLCSYATKRK   56 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~---~-------~~~~~~----~~c~~c~~~f~~~   56 (86)
                      ++...|.+|+..|..........+.   .       .+..|.    ..|+.||.++...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            3568999999998877554444332   0       111110    3699999876643

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=88.73  E-value=0.51  Score=26.35  Aligned_cols=30  Identities=13%  Similarity=0.482  Sum_probs=22.4

Q ss_pred             CCCceecccccccccChHHHHHHHHHhhCC
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      .+..|.|..|++.|.....+..|+...+.+
T Consensus        74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e  103 (214)
T PF04959_consen   74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHPE  103 (214)
T ss_dssp             SSEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred             cCCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence            455699999999999999999999865443

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.65  E-value=0.32  Score=25.35  Aligned_cols=39  Identities=18%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             CCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccC
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATK   54 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~   54 (86)
                      +..-|.|..|+..|.....+...   . .... |.|+.||....
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~~~---d-~~~~-f~Cp~Cg~~l~  134 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQLL---D-MDGT-FTCPRCGEELE  134 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHHhc---C-CCCc-EECCCCCCEEE
Confidence            45578999999888754432211   1 1233 89999987654

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=88.33  E-value=0.36  Score=24.86  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=14.8

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      ..|..||+.|...   .+|...|+|-.
T Consensus        73 i~clecGk~~k~L---krHL~~~~glt   96 (132)
T PF05443_consen   73 IICLECGKKFKTL---KRHLRTHHGLT   96 (132)
T ss_dssp             EE-TBT--EESBH---HHHHHHTT-S-
T ss_pred             eEEccCCcccchH---HHHHHHccCCC
Confidence            5799999988765   78888886654

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=86.60  E-value=0.73  Score=18.07  Aligned_cols=33  Identities=15%  Similarity=0.340  Sum_probs=20.2

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCcccc
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYAT   53 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f   53 (86)
                      ..|..|+..|......     +-..... ..|..|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~-----ip~~g~~-v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK-----IPPKGRK-VRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHH-----CCCCCcE-EECCCCCCEe
Confidence            4678888777655432     2122234 6888888766

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=86.55  E-value=0.6  Score=18.26  Aligned_cols=34  Identities=15%  Similarity=0.298  Sum_probs=20.2

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCccccC
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATK   54 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~   54 (86)
                      +.|..|+..|......     ....... ..|..|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~-----~~~~~~~-v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQ-----LGANGGK-VRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHH-----cCCCCCE-EECCCCCCEEE
Confidence            5788888777554432     1111223 68888887663

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>KOG1146|consensus

Probab=86.02  E-value=0.76  Score=32.15  Aligned_cols=59  Identities=20%  Similarity=0.431  Sum_probs=45.3

Q ss_pred             CCceecccccccccChHHHHHHHHHhh-----------------CCCCCccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYEC-----------------GKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~-----------------~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      ..+|.|.+|...|.....+..|.+...                 .... | |..|...|.....|+.|++.-+++...
T Consensus      1282 ~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~l~~~d~~~-~-c~~c~~~~~~~~alqihm~~~~~~~kt 1357 (1406)
T KOG1146|consen 1282 THRYLCRQCKMAFDGEAPLTAHQRKFCFAGRGSGGSMPPPLRVPDCTY-H-CLACEVLLSGREALQIHMRSSAHRRKT 1357 (1406)
T ss_pred             chhHHHHHHHhhhcchhHHHHHHHHHHhccCccccCCCCcccCccccc-c-chHHHhhcchhHHHHHHHHHhhhcccC
Confidence            457999999999999999988875211                 1123 5 888999999999999999876665543

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=85.99  E-value=0.52  Score=26.32  Aligned_cols=26  Identities=27%  Similarity=0.539  Sum_probs=19.5

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |.|..|+|.|.-..-..+|+..-|.+
T Consensus        78 ~~C~lc~KlFkg~eFV~KHI~nKH~e  103 (214)
T PF04959_consen   78 WRCPLCGKLFKGPEFVRKHIFNKHPE  103 (214)
T ss_dssp             EEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred             ECCCCCCcccCChHHHHHHHhhcCHH
Confidence            78999999999998889998766544

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=85.79  E-value=0.87  Score=17.91  Aligned_cols=34  Identities=15%  Similarity=0.462  Sum_probs=20.5

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCccccC
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATK   54 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~   54 (86)
                      ..|..|+..|.....     +...+... ..|..|+..|.
T Consensus         3 i~CP~C~~~f~v~~~-----~l~~~~~~-vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDD-----KLPAGGRK-VRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHH-----HcccCCcE-EECCCCCcEee
Confidence            467888877755443     12222334 78888887663

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=85.09  E-value=1.1  Score=26.76  Aligned_cols=24  Identities=25%  Similarity=0.607  Sum_probs=20.9

Q ss_pred             CCCCccCCC--CccccCChhHHHHHHH
Q psy4268          40 KLPAFPCTL--CSYATKRKTSLASHYY   64 (86)
Q Consensus        40 ~~~~~~c~~--c~~~f~~~~~l~~h~~   64 (86)
                      ++| |+|+.  |.|.+.....|..|+.
T Consensus       347 ~Kp-ykCpV~gC~K~YknqnGLKYH~l  372 (423)
T COG5189         347 GKP-YKCPVEGCNKKYKNQNGLKYHML  372 (423)
T ss_pred             Cce-ecCCCCCchhhhccccchhhhhh
Confidence            478 99976  9999999999999963

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=84.44  E-value=0.69  Score=19.05  Aligned_cols=30  Identities=23%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccC
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATK   54 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~   54 (86)
                      .|.|..||..+....          .... +.|+.||..+.
T Consensus         3 ~y~C~~CG~~~~~~~----------~~~~-~~Cp~CG~~~~   32 (46)
T PRK00398          3 EYKCARCGREVELDE----------YGTG-VRCPYCGYRIL   32 (46)
T ss_pred             EEECCCCCCEEEECC----------CCCc-eECCCCCCeEE
Confidence            588888987664321          1114 78999986543

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=84.33  E-value=1.1  Score=18.52  Aligned_cols=27  Identities=30%  Similarity=0.735  Sum_probs=17.9

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCCCCccc
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYA   52 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~   52 (86)
                      .|.|..||..|...           ...+ ..|..||..
T Consensus         2 ~Y~C~~Cg~~~~~~-----------~~~~-irC~~CG~r   28 (44)
T smart00659        2 IYICGECGRENEIK-----------SKDV-VRCRECGYR   28 (44)
T ss_pred             EEECCCCCCEeecC-----------CCCc-eECCCCCce
Confidence            37888898776432           2234 789888854

present in RNA polymerase I, II and III

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=83.18  E-value=0.46  Score=28.25  Aligned_cols=45  Identities=29%  Similarity=0.471  Sum_probs=36.8

Q ss_pred             cccccc--CCCCC--Cceecc--cccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           2 LGYYFS--APSGE--KRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         2 l~~h~~--~h~~~--~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      +..|..  .|.++  +++.|.  .|++.|.....+..|...+.+..+ +.+.
T Consensus       305 l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  355 (467)
T COG5048         305 LTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISP-AKEK  355 (467)
T ss_pred             ccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCc-cccc
Confidence            456677  79999  999999  799999999999999888887765 5543

>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2

Probab=82.84  E-value=0.32  Score=19.14  Aligned_cols=32  Identities=22%  Similarity=0.490  Sum_probs=18.2

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCC
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKR   55 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~   55 (86)
                      ..|..||..|..        ........ -.|..||..+.+
T Consensus         2 r~C~~Cg~~Yh~--------~~~pP~~~-~~Cd~cg~~L~q   33 (36)
T PF05191_consen    2 RICPKCGRIYHI--------EFNPPKVE-GVCDNCGGELVQ   33 (36)
T ss_dssp             EEETTTTEEEET--------TTB--SST-TBCTTTTEBEBE
T ss_pred             cCcCCCCCcccc--------ccCCCCCC-CccCCCCCeeEe
Confidence            467788877643        22233444 578888765543

7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=82.82  E-value=0.37  Score=20.29  Aligned_cols=30  Identities=17%  Similarity=0.467  Sum_probs=18.1

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCCCCcc
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSY   51 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~   51 (86)
                      .|.|..|+..|.....+      .. ... ..|+.||.
T Consensus         5 ey~C~~Cg~~fe~~~~~------~~-~~~-~~CP~Cg~   34 (52)
T TIGR02605         5 EYRCTACGHRFEVLQKM------SD-DPL-ATCPECGG   34 (52)
T ss_pred             EEEeCCCCCEeEEEEec------CC-CCC-CCCCCCCC
Confidence            37888888877643221      11 223 46888885

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=82.52  E-value=0.16  Score=26.78  Aligned_cols=12  Identities=17%  Similarity=0.340  Sum_probs=6.8

Q ss_pred             ccCCCCccccCC
Q psy4268          44 FPCTLCSYATKR   55 (86)
Q Consensus        44 ~~c~~c~~~f~~   55 (86)
                      +.|..||+.|..
T Consensus        29 ~~c~~c~~~f~~   40 (154)
T PRK00464         29 RECLACGKRFTT   40 (154)
T ss_pred             eeccccCCcceE
Confidence            456666665554

>KOG4167|consensus

Probab=81.79  E-value=0.29  Score=32.04  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=21.7

Q ss_pred             ccCCCCccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|..|++.|....++..|+++|-.
T Consensus       793 FpCreC~kvF~KiKSrNAHMK~Hr~  817 (907)
T KOG4167|consen  793 FPCRECGKVFFKIKSRNAHMKTHRQ  817 (907)
T ss_pred             eehHHHHHHHHHHhhhhHHHHHHHH
Confidence            7899999999998889999988753

>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]

Probab=80.82  E-value=0.88  Score=21.87  Aligned_cols=11  Identities=18%  Similarity=0.613  Sum_probs=5.1

Q ss_pred             ceecccccccc
Q psy4268          14 RYLCDSCDRTY   24 (86)
Q Consensus        14 ~~~c~~c~~~~   24 (86)
                      |-.|..||+.|
T Consensus        58 Pa~CkkCGfef   68 (97)
T COG3357          58 PARCKKCGFEF   68 (97)
T ss_pred             ChhhcccCccc
Confidence            34444454444

>KOG4167|consensus

Probab=80.49  E-value=0.41  Score=31.41  Aligned_cols=28  Identities=18%  Similarity=0.405  Sum_probs=24.4

Q ss_pred             CceecccccccccChHHHHHHHHHhhCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      .-|.|..|++.|.....+..||+.|.-.
T Consensus       791 giFpCreC~kvF~KiKSrNAHMK~Hr~q  818 (907)
T KOG4167|consen  791 GIFPCRECGKVFFKIKSRNAHMKTHRQQ  818 (907)
T ss_pred             ceeehHHHHHHHHHHhhhhHHHHHHHHH
Confidence            3499999999999999999999988653

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=80.26  E-value=0.53  Score=22.43  Aligned_cols=30  Identities=23%  Similarity=0.528  Sum_probs=18.0

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccC
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATK   54 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~   54 (86)
                      .|.|..|++.        .+.+.-.|  - +.|..|+..|.
T Consensus        35 ~~~Cp~C~~~--------~VkR~a~G--I-W~C~kCg~~fA   64 (89)
T COG1997          35 KHVCPFCGRT--------TVKRIATG--I-WKCRKCGAKFA   64 (89)
T ss_pred             CCcCCCCCCc--------ceeeeccC--e-EEcCCCCCeec
Confidence            4778888754        11222233  3 78888887775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	86
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-04
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		6e-04
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		9e-04

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 2  LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
          L  +    +G K Y C +CD   ++ SSL +H+     + P F C +C YA++  + L  
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTV 82
Query: 62 HYYRKHVGEDG 72
          H  R H G+ G
Sbjct: 83 H-LRSHTGDSG 92

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 12 EKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
          E+ Y C  +SCDR +S+ S+L RH+    G+ P F C +C     R   L +H  R H G
Sbjct: 2  ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRTHTG 59
Query: 70 E 70
          E
Sbjct: 60 E 60

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG 72
          ++C+ C R ++ +  LKRH      + P +PC LC+ A  R+  L  H  + H G  G
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	86
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-10
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-08
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	2e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	5e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-04
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	8e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	7e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	1e-05
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	8e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	9e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	8e-04
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	3e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	7e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	7e-04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	8e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	8e-04

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 51.6 bits (124), Expect = 1e-10
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM---NYECGKLPAFPCTLCSYATKRKTSLASHYYRK 66
          SG     C+ C  T   ++SL  H          L  FPC  C    ++  S+A+H  + 
Sbjct: 3  SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKS 61

Query: 67 HVGEDGALPPPHEP 80
          H      L  P E 
Sbjct: 62 HPAL---LLAPQES 72

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 34.7 bits (80), Expect = 4e-04
 Identities = 5/28 (17%), Positives = 11/28 (39%)

Query: 7  SAPSGEKRYLCDSCDRTYSNRSSLKRHM 34
          +      R+ C+ C + +    S+  H 
Sbjct: 31 AETVAALRFPCEFCGKRFEKPDSVAAHR 58

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 50.2 bits (121), Expect = 2e-10
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
          S      C  C  + S++++L+ H    C   P F C  CS+ TK+ ++L+ H  +K  G
Sbjct: 5  SSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKH-MKKFHG 62

Query: 70 E 70
          +
Sbjct: 63 D 63

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.0 bits (110), Expect = 2e-08
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECG-KLPAFPCTLCSYATKRKTSLASHYYRKHV 68
          SGEK Y C  C   ++   ++K H+  +    +  F C  C     RK+ L  H  ++H 
Sbjct: 11 SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70

Query: 69 GE 70
            
Sbjct: 71 YS 72

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 46.3 bits (109), Expect = 2e-08
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYE---CGKLPAFPCTLCSYATKRKTSLASHYYRKHV 68
          E  Y C  C     + +    H++ E        ++ C  C++ TKR  +L+ H  + H 
Sbjct: 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75

Query: 69 GED 71
          GE+
Sbjct: 76 GEE 78

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 42.9 bits (102), Expect = 3e-07
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH--YYRKHV 68
          GEK + CD C R ++     KRH + +    P            +   L +     +K V
Sbjct: 28 GEKPFACDICGRKFARSDERKRHRDIQHIL-P-ILEDKVEELLSKNYHLENEVARLKKLV 85

Query: 69 GE 70
          GE
Sbjct: 86 GE 87

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 43.3 bits (103), Expect = 5e-07
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 11  GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
            E+ + C  C  T+  R  L+ HM    G++P + C+ CS    +K  L SH  + H G 
Sbjct: 63  SEQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHSGP 121

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYEC---GKLPAFPCTLCSYATKRKTSLASHYYRKH 67
          GEK + C  C + Y  + +L  H    C    +   F C++C    +R+  L  H    H
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLH-MVSH 89

Query: 68 VGE 70
           GE
Sbjct: 90 TGE 92

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 36.7 bits (86), Expect = 1e-04
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH--YYRKH 67
          SG     C +C + + ++  LK H     G+ P F C  C     RK +L  H      +
Sbjct: 3  SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMN 61

Query: 68 VGE 70
            E
Sbjct: 62 RSE 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 41.4 bits (98), Expect = 8e-07
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 11 GEKRYLCDSCDRTYSNRSSLKRHM--NYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
          GE  Y C  C R Y++ S+  RH   +++      +PC  C     RK ++ +H    H
Sbjct: 7  GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIH 64

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 40.6 bits (96), Expect = 2e-06
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNY---ECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
          GEK Y C  CD+T+  +  L  H            AF C+ C     R+ ++A H     
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH-ADNC 70

Query: 68 VGED 71
           G D
Sbjct: 71 AGPD 74

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.6 bits (96), Expect = 3e-06
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNY---ECGKLPAFPCTLCSYATKRKTSLASHYYRK 66
          SGEK Y C  C   +  +  +  H+       GK P + C  C     R   L  H  + 
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK-P-YICQSCGKGFSRPDHLNGHIKQV 88

Query: 67 HVGE 70
          H G 
Sbjct: 89 HSGP 92

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 38.6 bits (91), Expect = 2e-05
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
          SG     C+ C + + +   L RH     G+ P + C +C    KRK  ++ H  R H G
Sbjct: 3  SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYH-VRSHDG 60

Query: 70 EDG 72
            G
Sbjct: 61 SVG 63

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 39.8 bits (94), Expect = 5e-06
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
          G+K + C  C R +S    L  H+    G+ P F C +C     R      H  + H+ +
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH-TKIHLRQ 88

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.1 bits (87), Expect = 6e-05
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 12 EKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
          E+ Y C    CDR +S   SL RH+    G+ P F C +C     R   L +H  R H G
Sbjct: 2  ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRTHTG 59

Query: 70 E 70
          E
Sbjct: 60 E 60

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 39.3 bits (93), Expect = 7e-06
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
               + C+ C + +S +  LK HM    G  P + C  C YA    +SL  H  R H  
Sbjct: 4  GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKH-LRIHSD 61

Query: 70 E 70
          E
Sbjct: 62 E 62

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 38.8 bits (91), Expect = 1e-05
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 11 GEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
           +  Y C    CD+ +S  S LKRH     G         CS+  K  T    H    H
Sbjct: 28 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 38.2 bits (88), Expect = 1e-05
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
          +Y+C+ C       S LK+H+       P + CT C+++ K K +L  H  +     
Sbjct: 1  KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKH-MKSKAHS 55

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG 72
          + ++C+ C R ++ +  LKRH      + P +PC LC+ A  R+  L  H  + H G  G
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLP--------AFPCTLCSYATKRKTSLAS 61
            +      SCDRT+S    L  H+  E    P           C     + K K  L +
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80

Query: 62 HYYRKHVGE 70
          H  R H GE
Sbjct: 81 H-IRVHTGE 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 37.9 bits (89), Expect = 3e-05
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKH 67
          +         C +TY+  S LK H+    G+ P + C    C +   R   L  H YRKH
Sbjct: 3  TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRH-YRKH 60

Query: 68 VGE 70
           G 
Sbjct: 61 TGH 63

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 38.3 bits (90), Expect = 3e-05
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 11 GEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV 68
          GEK Y CD   C+R +S    LKRH     G  P F C  C     R   L +H  R H 
Sbjct: 33 GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTH-TRTHT 90

Query: 69 GE 70
          GE
Sbjct: 91 GE 92

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 16/70 (22%)

Query: 10 SGEKRYLCD--SCDRTYSNRSSLKRHMN-------YECGKLPAFPCTLCSYATKRKTSLA 60
          S ++ ++C    C++ Y   S L+ H         Y+C          C     R   L 
Sbjct: 2  SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD------CERRFSRSDQLK 55

Query: 61 SHYYRKHVGE 70
           H  R+H G 
Sbjct: 56 RH-QRRHTGV 64

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 36.3 bits (85), Expect = 8e-05
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
           +K Y CD C  ++  + +L  H     G+ P + C +C     R  +L +H  R H GE
Sbjct: 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTH-TRIHSGE 71

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 37.6 bits (88), Expect = 9e-05
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 20/72 (27%)

Query: 12 EKRYLCDSCDRTYSNRSSLKRHMN-------------YECGKLPAFPCTLCSYATKRKTS 58
          E     D C + + ++  L  H+N             +  G      C+      K +  
Sbjct: 1  ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG------CSRELRPFKAQYM 54

Query: 59 LASHYYRKHVGE 70
          L  H  R+H GE
Sbjct: 55 LVVH-MRRHTGE 65

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 34.9 bits (81), Expect = 8e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 10  SGEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCT--LCSYATKRKTSLASHYYR 65
           +GEK + C    C ++YS   +LK H+    G+ P + C    CS A    +  A H  R
Sbjct: 63  TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNR 121

Query: 66  KHVGE 70
            H  E
Sbjct: 122 THSNE 126

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 35.7 bits (81), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 4   YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHY 63
           Y   A     +++C  C   +S+  SLK+H+ Y         C +C        S   H 
Sbjct: 64  YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH---TKVCPVCKKEFTSTDSALDHV 120

Query: 64  YRKHVG 69
            +KH  
Sbjct: 121 CKKHNI 126

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 24/72 (33%)

Query: 11 GEKRYLCDSCDRTYSNRSSLKRHM------------NYECGKLPAFPCTLCSYATKRKTS 58
          G + ++C  C + +   S LKRH                CGK   F             +
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK--RF---------SLDFN 79

Query: 59 LASHYYRKHVGE 70
          L +H  R H G+
Sbjct: 80 LRTH-VRIHTGD 90

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
          SGEK Y C  C + +S  S L +H     G+ P + C  C  A  + + L +H  R H  
Sbjct: 10 SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH-QRIHTS 67

Query: 70 E 70
           
Sbjct: 68 G 68

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 34.0 bits (79), Expect = 7e-04
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 22/70 (31%)

Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------Y---ECGKLPAFPCTLCSYATKRKTSLA 60
            +RY CD C +++S+ S L +H         Y   ECGK  AF          +++ L 
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK--AF---------IQRSHLI 63

Query: 61 SHYYRKHVGE 70
           H +R H G 
Sbjct: 64 GH-HRVHTGS 72

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 34.3 bits (80), Expect = 7e-04
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
          SG+K Y C  C ++++++S   RHM+   G  P + C +C    K K  L  H  + H G
Sbjct: 6  SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGH-MKIHTG 62

Query: 70 E 70
           
Sbjct: 63 I 63

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 33.0 bits (76), Expect = 8e-04
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
           GE  YLC  C ++++ R SL  H 
Sbjct: 7  GGETPYLCGQCGKSFTQRGSLAVHQ 31

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 34.1 bits (79), Expect = 8e-04
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
          +G K + C  C+R++S    L  HM
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHM 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	86
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.88
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.84
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.83
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.82
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.82
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.82
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.81
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.81
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.8
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.79
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.79
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.78
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.78
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.77
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.76
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.76
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.76
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.75
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.73
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.73
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.71
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.71
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.71
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.71
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.71
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.7
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.7
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.7
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.69
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.69
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.67
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.66
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.66
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.66
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.65
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.65
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.65
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.65
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.64
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.64
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.63
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.63
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.63
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.63
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.62
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.62
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.62
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.62
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.62
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.62
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.62
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.62
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.62
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.62
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.62
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.62
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.62
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.62
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.62
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.62
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.61
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.61
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.61
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.61
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.61
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.61
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.61
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.61
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.61
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.61
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.6
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.6
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.6
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.6
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.6
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.6
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.6
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.6
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.6
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.6
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.6
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.6
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.6
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.6
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.6
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.6
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.6
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.6
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.59
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.59
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.59
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.59
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.59
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.58
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.58
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.58
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.58
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.58
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.57
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.57
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.56
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.56
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.55
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.55
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.55
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.55
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.55
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.55
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.55
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.54
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.54
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.54
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.54
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.53
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.53
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.53
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.53
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.53
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.53
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.53
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.53
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.53
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.53
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.53
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.52
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.52
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.52
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.52
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.52
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.52
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.52
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.52
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.52
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.51
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.51
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.51
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.51
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.51
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.51
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.51
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.5
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.5
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.5
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.5
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.5
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.5
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.49
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.49
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.49
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.49
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.49
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.49
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.48
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.48
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.47
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.47
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.47
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.46
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.44
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.44
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.43
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.43
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.42
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.42
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.41
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.4
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.38
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.38
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.34
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.29
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.28
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.24
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.24
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.22
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.21
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.2
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.19
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.19
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.18
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.17
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.17
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.16
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.16
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.15
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.15
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.14
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.14
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.14
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.13
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.13
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.13
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.12
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.12
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.11
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.11
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.11
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.11
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.11
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.11
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.1
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.1
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.09
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.08
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.07
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.07
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.07
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.07
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.05
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.04
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.03
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.03
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.03
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.03
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.02
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.02
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.01
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	99.01
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.0
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.98
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.97
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.97
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.96
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.96
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.96
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.95
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.95
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.93
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.92
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.91
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.91
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.89
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.89
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.88
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.87
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.87
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.86
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.81
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.8
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.78
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.78
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.78
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.77
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.76
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.75
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.75
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.75
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.75
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.74
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.74
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.73
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.73
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.73
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.72
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.7
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.69
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.69
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.68
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.68
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.67
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.67
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.66
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.66
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.65
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.65
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.64
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.62
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.62
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.05
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.61
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.59
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.58
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.58
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.58
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.99
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.57
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.57
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.99
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.98
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.56
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.54
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.53
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.51
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.49
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.45
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.81
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.79
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.41
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.33
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.23
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.22
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.86
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.41
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.32
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.98
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.31
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.25
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.89
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.37
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	93.92
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.77
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	93.3
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	91.94
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	91.45
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	91.21
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	91.01
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	89.87
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	89.72
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	88.73
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	87.86
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	87.26
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	86.27
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	82.13
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	80.18

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.88  E-value=5.3e-23  Score=90.68  Aligned_cols=59  Identities=24%  Similarity=0.528  Sum_probs=55.6

Q ss_pred             CCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      .||||.|..|++.|.....|..|+++|+++++ |.|..|++.|.....|..|+++|+|+.
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRP-RSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCC-EECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcC-eECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            37999999999999999999999999999999 999999999999999999999888754

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=4.9e-21  Score=91.80  Aligned_cols=72  Identities=19%  Similarity=0.285  Sum_probs=66.8

Q ss_pred             ccccccCCCCCCceeccccccccc-ChHHHHHHHHHhhC-CCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYS-NRSSLKRHMNYECG-KLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~-~~~~l~~h~~~~~~-~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      +..|++.|.++++|.|..|++.|. ....|..|++.|.+ .++ |.|..|++.|.....|..|++.|+++++...
T Consensus        12 ~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~-~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~~   85 (98)
T 2gqj_A           12 EEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDA-LKCQHCRKQFKSKAGLNYHTMAEHSAKPSDA   85 (98)
T ss_dssp             CSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHH-HSCSSSCCCCSCHHHHHHHHHHHSCSCSSCC
T ss_pred             HHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCC-EECCCCCCccCCHHHHHHHHHHHcCCCCCCC
Confidence            467889999999999999999999 99999999999998 888 9999999999999999999999999987544

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.83  E-value=2.7e-21  Score=97.25  Aligned_cols=69  Identities=22%  Similarity=0.378  Sum_probs=47.2

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      |..|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..|++.|.....|..|++.++++++
T Consensus        38 L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~hh~~~p  106 (133)
T 2lt7_A           38 LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR-YQCLACGKSFINYQFMSSHIKSVHSQDP  106 (133)
T ss_dssp             HHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCC-EEESSSCCEESSHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCcc-ccCCCCCCCcCCHHHHHHHhHHhcCCCC
Confidence            44566666666777777777777777777777766666666 7777777777777777777766666654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.82  E-value=6.4e-20  Score=84.35  Aligned_cols=69  Identities=26%  Similarity=0.461  Sum_probs=62.7

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHH-HhhCC-CCCccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMN-YECGK-LPAFPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~-~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      |.+|+++|+++++|.|..|++.|.....|..|++ .|.+. ++ |.|..|++.|.....|..|++.+++...
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~-~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK-FHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSS-EECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCc-cCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            6789999999999999999999999999999997 57664 67 9999999999999999999998887554

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.82  E-value=8.8e-20  Score=82.51  Aligned_cols=65  Identities=28%  Similarity=0.588  Sum_probs=61.6

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      .|+++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++.+
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCS-EECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-EeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            58899999999999999999999999999999999 999999999999999999999999988754

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.82  E-value=2.2e-19  Score=83.89  Aligned_cols=73  Identities=23%  Similarity=0.390  Sum_probs=66.2

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCC----CCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK----LPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~----~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |..|+++|+++++|.|..|++.|.....|..|++.+...    ++ |.|..|++.|.....|..|++.|+++++....
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~-~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~   79 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA-FVCSKCGKTFTRRNTMARHADNCAGPDGVEGE   79 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCC-EECSSSCCEESCHHHHHHHHHHCCCCCSCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcc-eECCCCCChhCCHHHHHHHHHHccCCCCcccC
Confidence            678999999999999999999999999999999876665    67 99999999999999999999999998876543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=1.3e-19  Score=82.37  Aligned_cols=67  Identities=28%  Similarity=0.483  Sum_probs=62.4

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      .+.++|+++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++..
T Consensus         4 ~~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A            4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             CCCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCC-EECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             CCCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCC-eECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            456789999999999999999999999999999999999 9999999999999999999999987643

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.81  E-value=4.3e-20  Score=92.84  Aligned_cols=70  Identities=23%  Similarity=0.376  Sum_probs=64.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      .|..+|.|+++|.|.+|++.|.....|..|+++|.++++ |.|..|++.|.....|..|++.|+++++...
T Consensus        12 h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   81 (133)
T 2lt7_A           12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKK-YPCRYCEKVFPLAEYRTKHEIHHTGERRYQC   81 (133)
T ss_dssp             EEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSC-EECSSSSCEESSHHHHHHHHHHHHTCCCEEE
T ss_pred             hceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCC-eeCCccCeecccccchhhhccccCCCccccC
Confidence            345678999999999999999999999999999999999 9999999999999999999999999887543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.80  E-value=3.5e-19  Score=81.32  Aligned_cols=64  Identities=22%  Similarity=0.532  Sum_probs=60.0

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      ..+.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS-EECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCC-EECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            357789999999999999999999999999999999 9999999999999999999999999876

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=7.8e-19  Score=80.83  Aligned_cols=63  Identities=27%  Similarity=0.502  Sum_probs=56.7

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhC---CCCCccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECG---KLPAFPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~---~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      .|+++++|.|.+|++.|.....|..|++.|.+   .++ |.|..|++.|.....|..|++.++....
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~-~~C~~C~k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCC-EECTTTCCEESSHHHHHHHHHHTSTTTS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcc-cCCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            48899999999999999999999999999986   788 9999999999999999999966655444

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.79  E-value=1.3e-19  Score=87.64  Aligned_cols=71  Identities=21%  Similarity=0.385  Sum_probs=61.3

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |..|+..|.++++|.|.+|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus        33 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           33 LLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             HHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCT-TSCSSSCCCCSSHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCC-eECCCcCCcccCHHHHHHHHHHhCCCCCCc
Confidence            45678888888899999999999999999999888888888 899999999999999999998888877653

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=2e-19  Score=85.57  Aligned_cols=70  Identities=27%  Similarity=0.587  Sum_probs=63.8

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      |..|++.|.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|++++..
T Consensus        24 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             HHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCC-EECSSSSCEESSHHHHHHHHTTCCSCCCC
T ss_pred             HHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            56788999999999999999999999999999999999988 99999999999999999999888887653

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.78  E-value=5.9e-20  Score=86.48  Aligned_cols=68  Identities=24%  Similarity=0.470  Sum_probs=58.4

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |..|++.|.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|++++
T Consensus        22 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             HHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             HHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCC-ccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            45677888888899999999999999999999998988888 999999999999999999998888765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.78  E-value=8.2e-19  Score=80.61  Aligned_cols=68  Identities=24%  Similarity=0.474  Sum_probs=62.3

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      ....+.++++|.|.+|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~   76 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGHHRVHTGSGPSS   76 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCS-EECSSSCCEESSHHHHHHHGGGSCCCCCCC
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcC-eeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            34567789999999999999999999999999999999 999999999999999999999999987753

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.77  E-value=2.4e-18  Score=80.48  Aligned_cols=61  Identities=20%  Similarity=0.500  Sum_probs=55.3

Q ss_pred             ccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhc
Q psy4268           6 FSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus         6 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      +..+++.++|.|.+|++.|.....|..|+++|+++++ |.|..|++.|.....|..|++..+
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQV-FPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSS-EECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCc-cCCCCCCCEeCCHHHHHHhCcccC
Confidence            3456678899999999999999999999999999999 999999999999999999976544

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.76  E-value=2.7e-19  Score=82.88  Aligned_cols=66  Identities=23%  Similarity=0.507  Sum_probs=58.9

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |..|+..|.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+|
T Consensus        17 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCC-EECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC-CcCCCcchhhCChHHHHHHHHhhCC
Confidence            45688888899999999999999999999999999999988 9999999999999999999988864

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.76  E-value=2.4e-18  Score=74.83  Aligned_cols=57  Identities=32%  Similarity=0.662  Sum_probs=50.6

Q ss_pred             CCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |+++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCC-EECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCC-cCCCCCcchhCCHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999 9999999999999999999988874

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=8.8e-19  Score=78.31  Aligned_cols=62  Identities=27%  Similarity=0.506  Sum_probs=56.7

Q ss_pred             ccCCCCCCceecccccccccChHHHHHHHHH-h-hCCCCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268           6 FSAPSGEKRYLCDSCDRTYSNRSSLKRHMNY-E-CGKLPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus         6 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~-~-~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      +++|+++++|.|..|++.|.....|..|++. | .+.++ |.|..|++.|.....|..|++.+++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~-~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCC-EECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcC-eECCCCCCccCCHHHHHHHHHHHcC
Confidence            3568899999999999999999999999998 6 57788 9999999999999999999998876

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=1e-18  Score=83.48  Aligned_cols=64  Identities=16%  Similarity=0.313  Sum_probs=57.4

Q ss_pred             cccccCCCCCCceecccccccc-cChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHH-HHHhcc
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTY-SNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH-YYRKHV   68 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~-~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h-~~~~~~   68 (86)
                      ..|+..|.++++|.|..|++.| .....|..|++.| +.++ |.|..|++.|.....|..| ++.|++
T Consensus        23 ~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~-~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           23 EQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEM-FTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             HHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCC-CCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             HHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCC-eECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            3456667788999999999999 9999999999999 9999 9999999999999999999 766654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=5.5e-18  Score=80.43  Aligned_cols=62  Identities=26%  Similarity=0.488  Sum_probs=47.0

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCC--CCCccCCCCccccCChhHHHHHHH
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK--LPAFPCTLCSYATKRKTSLASHYY   64 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~--~~~~~c~~c~~~f~~~~~l~~h~~   64 (86)
                      |..|+..|.++++|.|..|++.|.....|..|++.|.+.  ++ |.|..|++.|.....|..|++
T Consensus        23 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~-~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP-YICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             HHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSS-BCCSSSCCCBSSHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCc-eECCCccchhCCHHHHHHHHH
Confidence            456677777777788888887787777777777777765  66 778778887877777777775

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.73  E-value=9.1e-19  Score=92.17  Aligned_cols=69  Identities=23%  Similarity=0.468  Sum_probs=40.2

Q ss_pred             cccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      ..|+..|.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++.
T Consensus        94 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  162 (190)
T 2i13_A           94 RAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRTHTGEKPY  162 (190)
T ss_dssp             HHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHHCCCCE
T ss_pred             HHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCC-eECCCCCcccCCHHHHHHHHHhcCCCCCe
Confidence            3455555555566666666666666666666655555555 66666666666666666666555555443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.71  E-value=4.4e-18  Score=83.59  Aligned_cols=72  Identities=31%  Similarity=0.523  Sum_probs=64.9

Q ss_pred             ccccccCCCCCCceecc--cccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |..|+..|.++++|.|.  .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus        24 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (119)
T 2jp9_A           24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC   97 (119)
T ss_dssp             HHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHHTCCCEEC
T ss_pred             HHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCC-ccCCccCchhCCHHHHHHHHHHhcCCCCeeC
Confidence            56788888899999999  699999999999999999999988 9999999999999999999999998887655

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=9.8e-19  Score=85.08  Aligned_cols=67  Identities=21%  Similarity=0.415  Sum_probs=47.2

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |..|++.|.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.++..
T Consensus        25 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           25 RDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             HHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCC-EECSSSCCEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCC-eeCCCCcchhcCHHHHHHHHHHcccc
Confidence            44566667777777777777777777777777777777666 77777777777777777777666543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.71  E-value=2.6e-17  Score=71.47  Aligned_cols=56  Identities=29%  Similarity=0.647  Sum_probs=53.2

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      ||.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCC-EECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCC-ccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            58999999999999999999999999999 999999999999999999999998875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.6e-17  Score=80.06  Aligned_cols=66  Identities=21%  Similarity=0.328  Sum_probs=59.2

Q ss_pred             CCCCCCceecccccccccChHHHHHHHH-Hh---hCCCCCccCCCCccccCChhHHHHH-HHHhccCCCCCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMN-YE---CGKLPAFPCTLCSYATKRKTSLASH-YYRKHVGEDGAL   74 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~-~~---~~~~~~~~c~~c~~~f~~~~~l~~h-~~~~~~~~~~~~   74 (86)
                      .-+|+++|.|..|++.|.....|..|++ .|   .+.++ |.|..|++.|.....|..| ++.|+++++..+
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekp-f~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C   82 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS-YVCVECNFLTKRYDALSEHNLKYHPGEENFKL   82 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCC-EEETTTTEEESSTHHHHTHHHHTSTTCCCEEE
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCC-cCCCCCCcccCCHHHHHHHHHHhcCCCCCeeC
Confidence            3468999999999999999999999997 48   55788 9999999999999999999 789999987654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.71  E-value=4.9e-17  Score=80.39  Aligned_cols=72  Identities=24%  Similarity=0.446  Sum_probs=51.5

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC--CccccCChhHHHHHHHHhccCCCCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |..|+..| ++++|.|..|++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|++.|+++++....
T Consensus        23 l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   96 (124)
T 1ubd_C           23 MRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP   96 (124)
T ss_dssp             HHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCC-EECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCC
T ss_pred             HHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-eeCCCCCCcCccCCHHHHHHHHHHhCCCCceECC
Confidence            34566666 66777777777777777777777777777777 77764  777777777777777777777665553

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.70  E-value=1.5e-17  Score=79.54  Aligned_cols=64  Identities=31%  Similarity=0.630  Sum_probs=35.3

Q ss_pred             cccccCCCCCCceecc--cccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhc
Q psy4268           3 GYYFSAPSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      ..|++.|.++++|.|.  .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+
T Consensus        34 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCS-CBCSSSCCBCSSHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCC-eECCCCcCccCCHHHHHHHHHHhC
Confidence            3445555555555554  355555555555555555555555 555555555555555555555543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.70  E-value=2e-17  Score=81.81  Aligned_cols=70  Identities=24%  Similarity=0.467  Sum_probs=61.2

Q ss_pred             ccccccCCCCCCceeccc--ccccccChHHHHHHHHHhhCCCCCccCC--CCccccCChhHHHHHHHHhccCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCT--LCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      |..|+..|.++++|.|..  |++.|.....|..|++.|.+.++ |.|.  .|++.|.....|..|++.|+++++.
T Consensus        50 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           50 LKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             HHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCC-CCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             HHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCc-eECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            567899999999999986  99999999999999999999999 9995  5999999999999999999988753

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.70  E-value=2.3e-17  Score=77.36  Aligned_cols=64  Identities=34%  Similarity=0.643  Sum_probs=55.2

Q ss_pred             ccccccCCCCCCceecc--cccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHh
Q psy4268           2 LGYYFSAPSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      |..|+..|.++++|.|.  .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|
T Consensus        23 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             HHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC-EECSSSSCEESSHHHHHHHGGGG
T ss_pred             HHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCCCcccCCHHHHHHHHHhh
Confidence            45788888888999997  599999999999999988888888 99999999999999999888665

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=7.8e-17  Score=73.17  Aligned_cols=59  Identities=31%  Similarity=0.654  Sum_probs=55.0

Q ss_pred             cCCCCCCceecc--cccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHh
Q psy4268           7 SAPSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus         7 ~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      ..|.++++|.|.  .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCC-eECCCCCchhCCHHHHHHHHHhc
Confidence            368899999997  599999999999999999999999 99999999999999999998765

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.69  E-value=6.2e-18  Score=86.49  Aligned_cols=67  Identities=21%  Similarity=0.461  Sum_probs=32.6

Q ss_pred             ccccCCCCCCceeccc--ccccccChHHHHHHHHHhhCCCCCccCCC--CccccCChhHHHHHHHHhccCCC
Q psy4268           4 YYFSAPSGEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      .|+..|.++++|.|..  |++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|++.|+++++
T Consensus        80 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~  150 (155)
T 2rpc_A           80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKHMHVHTSDKS  150 (155)
T ss_dssp             HHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCS-BCCSSTTCCCCBSSHHHHHHSSTTTTSCCC
T ss_pred             HHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCC-ccCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            3444444444555544  55555555555555544444444 45543  55555555555555444444443

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.67  E-value=2.2e-17  Score=81.06  Aligned_cols=64  Identities=28%  Similarity=0.535  Sum_probs=59.7

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccC--CCCccccCChhHHHHHHHHh
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPC--TLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c--~~c~~~f~~~~~l~~h~~~~   66 (86)
                      |..|++.|.++++|.|..|++.|.....|..|++.|.+.++ |.|  ..|++.|.....|..|++.|
T Consensus        54 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCC-EECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCC-eeCCCCCCccccCCHHHHHHHHhcC
Confidence            56788889999999999999999999999999999999999 999  78999999999999998754

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.66  E-value=3.7e-17  Score=85.99  Aligned_cols=69  Identities=25%  Similarity=0.508  Sum_probs=41.3

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      |..|++.|.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++
T Consensus       121 l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~-~~C~~C~~~f~~~~~L~~H~~~H~~~k~  189 (190)
T 2i13_A          121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVHQRTHTGKKT  189 (190)
T ss_dssp             HHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHTTC-----
T ss_pred             HHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC-eECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            34455566666666666666666666666666666666666 6666666666666666666666666543

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.66  E-value=2.7e-17  Score=81.96  Aligned_cols=62  Identities=24%  Similarity=0.449  Sum_probs=56.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      .|+ .|+++++|.|..|++.|.....|..|+++|  .++ |.|..|++.|.....|..|++.|++.
T Consensus        65 ~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~-~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           65 RLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHT-KVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCC-CBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCC-CCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            344 478899999999999999999999999998  778 99999999999999999999999875

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1e-15  Score=70.28  Aligned_cols=66  Identities=27%  Similarity=0.413  Sum_probs=60.1

Q ss_pred             CCCCCceeccc--ccccccChHHHHHHHH-HhhCCCCCccCCC--CccccCChhHHHHHHHHhccCCCCCCC
Q psy4268           9 PSGEKRYLCDS--CDRTYSNRSSLKRHMN-YECGKLPAFPCTL--CSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus         9 h~~~~~~~c~~--c~~~~~~~~~l~~h~~-~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      .+++++|.|..  |++.|.....|..|++ .|.+.++ |.|..  |++.|.....|..|++.|+++++....
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   72 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   72 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCC-EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCC-eECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCC
Confidence            46788999997  9999999999999999 6999999 99998  999999999999999999998876553

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=2.7e-17  Score=79.63  Aligned_cols=67  Identities=18%  Similarity=0.250  Sum_probs=35.8

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHH-------------------------hhCCCCCccCCCCccccCChhHH
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNY-------------------------ECGKLPAFPCTLCSYATKRKTSL   59 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~-------------------------~~~~~~~~~c~~c~~~f~~~~~l   59 (86)
                      +++.|+++++|.|.+|++.|.....|..|++.                         |.+.++ |.|..|++.|.....|
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~-~~C~~C~~~f~~~~~L   85 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKK-LTCLECMRTFKSSFSI   85 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHHHCSTGG-GEEGGGTEECSSHHHH
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHHcCCCCC-ccCccccchhCCHHHH
Confidence            44555555555555555555555555555544                         444455 5555555555555555


Q ss_pred             HHHHH-HhccCCCC
Q psy4268          60 ASHYY-RKHVGEDG   72 (86)
Q Consensus        60 ~~h~~-~~~~~~~~   72 (86)
                      ..|++ .|.++++.
T Consensus        86 ~~H~~~~H~~~~~~   99 (107)
T 1wjp_A           86 WRHQVEVHNQNNMA   99 (107)
T ss_dssp             HHHHHHTSCCCCCC
T ss_pred             HHHHHHHcCCCCCC
Confidence            55554 44444433

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.8e-16  Score=75.85  Aligned_cols=66  Identities=29%  Similarity=0.529  Sum_probs=60.8

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ..|+++++|.| .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   68 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC   68 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTTCCCCCEEC
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcC-ccCCCCCcccCCHHHHHHHHHHcCCCCCeeC
Confidence            46899999999 999999999999999999999999 9999999999999999999998888776544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=8.6e-17  Score=79.38  Aligned_cols=69  Identities=20%  Similarity=0.370  Sum_probs=40.3

Q ss_pred             cccccCCCCCCceecccccccccChHHHHHHHHH---hhCCCCCccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNY---ECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      ..|++.|.++++|.|..|++.|.....|..|+..   +.+..+ |.|..|++.|.....|..|++.|+++++.
T Consensus        24 ~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~   95 (124)
T 2dlq_A           24 KVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVSHTGEMPY   95 (124)
T ss_dssp             HHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCC-EECSSSCCEESSHHHHHHHHHHHSSSCSE
T ss_pred             HHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCC-eECCCCCCccCCHHHHHHHHHHcCCCCCc
Confidence            4455555666666666666666666666666553   334455 66666666666666666666655555543

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=4.5e-16  Score=68.16  Aligned_cols=55  Identities=29%  Similarity=0.689  Sum_probs=50.4

Q ss_pred             CceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHH-Hhcc
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYY-RKHV   68 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~~   68 (86)
                      ++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++ .|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCS-EECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCC-ccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            579999999999999999999999999999 999999999999999999974 4544

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=3.3e-16  Score=77.27  Aligned_cols=67  Identities=30%  Similarity=0.565  Sum_probs=59.0

Q ss_pred             cccccc---CCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268           2 LGYYFS---APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus         2 l~~h~~---~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |..|+.   .+.++++|.|.+|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++..+++
T Consensus        51 l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           51 LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCS-EECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCccchhCCHHHHHHHHHHHCCC
Confidence            345655   46789999999999999999999999999999999 99999999999999999999765443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=3.5e-17  Score=80.08  Aligned_cols=71  Identities=20%  Similarity=0.159  Sum_probs=48.1

Q ss_pred             CccccccCCCCCCceecccccccccChHHHHHHHHH--hhCCCCCccCCCCcccc--CChhHHHHHHHHhccCCC
Q psy4268           1 MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNY--ECGKLPAFPCTLCSYAT--KRKTSLASHYYRKHVGED   71 (86)
Q Consensus         1 ~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~~~~~c~~c~~~f--~~~~~l~~h~~~~~~~~~   71 (86)
                      .|..|++.|+++++|.|..|++.|.....|..|++.  +.+..+.+.|..|++.|  .....|..|++.|+++++
T Consensus         6 ~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~   80 (115)
T 2dmi_A            6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV   80 (115)
T ss_dssp             CCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSS
T ss_pred             hhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcc
Confidence            378899999999999999999999999999999987  54333312244444444  444444444444444433

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.63  E-value=6.5e-16  Score=64.36  Aligned_cols=46  Identities=24%  Similarity=0.379  Sum_probs=43.2

Q ss_pred             cccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      ..|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS-SGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTS-SCCSCC
T ss_pred             CCCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            3689999999999999999999999999999999999999 999876

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.63  E-value=9.1e-16  Score=71.92  Aligned_cols=56  Identities=27%  Similarity=0.590  Sum_probs=51.1

Q ss_pred             CCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      +++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.+++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCC-EECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCC-ccCCCCCCccCCHHHHHHHHHHhCC
Confidence            5789999999999999999999999999988 9999999999999999999988774

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.63  E-value=6.8e-16  Score=73.24  Aligned_cols=66  Identities=24%  Similarity=0.491  Sum_probs=60.5

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ++.++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   67 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDERPFKC   67 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCS-EECSSSCCEESSHHHHHHHHHHSCCCCCEEC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCC-EeCCCCCCccCCHHHHHHHHHHhCCCCCccC
Confidence            46788999999999999999999999999999999 9999999999999999999999988776544

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.63  E-value=8.7e-16  Score=63.92  Aligned_cols=45  Identities=20%  Similarity=0.352  Sum_probs=42.9

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCT-TSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            689999999999999999999999999999999999999 999877

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.62  E-value=9.4e-16  Score=63.87  Aligned_cols=45  Identities=27%  Similarity=0.435  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCC-SSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=9.2e-16  Score=63.87  Aligned_cols=45  Identities=27%  Similarity=0.531  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSC-SSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            689999999999999999999999999999999999999 999876

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=3.2e-15  Score=70.77  Aligned_cols=60  Identities=25%  Similarity=0.557  Sum_probs=56.8

Q ss_pred             CCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268           9 PSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus         9 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      .+++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHHSCSSCS-EECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHhcCCCCC-CcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            3678999999999999999999999999999999 99999999999999999999999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=1e-15  Score=63.75  Aligned_cols=45  Identities=24%  Similarity=0.402  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCC-SCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=8.4e-16  Score=64.00  Aligned_cols=45  Identities=33%  Similarity=0.487  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCC-SCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCC-CCCCCC
Confidence            689999999999999999999999999999999999999 999876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=1.2e-15  Score=63.55  Aligned_cols=45  Identities=29%  Similarity=0.426  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|++.|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSC-CSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            689999999999999999999999999999999999999 999876

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.3e-16  Score=81.41  Aligned_cols=73  Identities=26%  Similarity=0.403  Sum_probs=61.6

Q ss_pred             ccccccCCCCCCceeccc--ccccccChHHHHHHHHHhhCCCCCccCCC--CccccCChhHHHHHH-HHhccCCCCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHY-YRKHVGEDGALP   75 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~-~~~~~~~~~~~~   75 (86)
                      |..|+..|.++++|.|.+  |++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|+ +.|.++++....
T Consensus        55 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  132 (155)
T 2gli_A           55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK  132 (155)
T ss_dssp             HHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCC-EECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECC
T ss_pred             HHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCC-eeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCC
Confidence            567888888889999985  99999999999999999888888 99988  999999999999998 677777665543

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=1e-15  Score=63.73  Aligned_cols=46  Identities=28%  Similarity=0.488  Sum_probs=42.9

Q ss_pred             cccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .+|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ytj_A            1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP-SGPSSG   46 (46)
T ss_dssp             CCSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCC-SSCSCC
T ss_pred             CCcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            3689999999999999999999999999999999999999 999876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=1e-15  Score=63.76  Aligned_cols=45  Identities=29%  Similarity=0.468  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|++.|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSC-SSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCC-CCCCCC
Confidence            689999999999999999999999999999999999999 999876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=1.1e-15  Score=63.65  Aligned_cols=46  Identities=33%  Similarity=0.516  Sum_probs=43.3

Q ss_pred             cccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      ..|+++|+++++|.|..|++.|.....|..|++.|.+.++ |.|..|
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eme_A            1 GSSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSC-CSSCCC
T ss_pred             CCCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            3689999999999999999999999999999999999999 999877

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=9.2e-16  Score=63.85  Aligned_cols=45  Identities=27%  Similarity=0.433  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSC-CCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCC-CCCCCC
Confidence            689999999999999999999999999999999999999 999876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=1.4e-15  Score=63.32  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCS-SCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=63.07  Aligned_cols=44  Identities=27%  Similarity=0.402  Sum_probs=41.5

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      |+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCS-CSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            67889999999999999999999999999999999999 999876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.62  E-value=1e-15  Score=63.70  Aligned_cols=45  Identities=31%  Similarity=0.521  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCC-CSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=1.1e-15  Score=63.58  Aligned_cols=45  Identities=29%  Similarity=0.445  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCS-SSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.62  E-value=1e-15  Score=63.74  Aligned_cols=45  Identities=27%  Similarity=0.452  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|++.|.++++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCS-CCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=1.4e-15  Score=63.32  Aligned_cols=45  Identities=24%  Similarity=0.389  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSS-CCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=9.9e-16  Score=63.75  Aligned_cols=45  Identities=27%  Similarity=0.316  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP-SGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCC-SCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            689999999999999999999999999999999999999 999876

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=9.1e-16  Score=63.91  Aligned_cols=46  Identities=26%  Similarity=0.368  Sum_probs=43.2

Q ss_pred             cccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .+|+++|+++++|.|.+|++.|.....|..|+++|.+.++ |.|..|
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em5_A            1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCC-SSCCCC
T ss_pred             CCCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            3689999999999999999999999999999999999999 999877

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.61  E-value=9.7e-16  Score=63.80  Aligned_cols=45  Identities=33%  Similarity=0.442  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSC-SCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCC-cCCCCC
Confidence            689999999999999999999999999999999999999 999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=1e-15  Score=63.72  Aligned_cols=45  Identities=27%  Similarity=0.437  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP-SGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCS-CSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=9.4e-16  Score=63.85  Aligned_cols=45  Identities=27%  Similarity=0.469  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCC-CSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.61  E-value=1.4e-15  Score=63.36  Aligned_cols=45  Identities=29%  Similarity=0.436  Sum_probs=42.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSS-CSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.61  E-value=9.6e-16  Score=63.79  Aligned_cols=45  Identities=29%  Similarity=0.343  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCC-SCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            689999999999999999999999999999999999999 999876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=1.1e-15  Score=63.63  Aligned_cols=45  Identities=29%  Similarity=0.466  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCC-SCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=1.2e-15  Score=63.57  Aligned_cols=45  Identities=29%  Similarity=0.438  Sum_probs=42.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCC-SCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.2e-15  Score=63.52  Aligned_cols=45  Identities=29%  Similarity=0.473  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCC-CSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999877

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.1e-15  Score=63.71  Aligned_cols=45  Identities=22%  Similarity=0.420  Sum_probs=42.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSC-SCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.6e-15  Score=63.12  Aligned_cols=45  Identities=27%  Similarity=0.341  Sum_probs=42.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT-SGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCC-CCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.1e-15  Score=63.59  Aligned_cols=46  Identities=28%  Similarity=0.488  Sum_probs=43.1

Q ss_pred             cccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      ..|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2en1_A            1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCC-SCCCCC
T ss_pred             CCcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            3688999999999999999999999999999999999999 999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.5e-15  Score=63.16  Aligned_cols=45  Identities=20%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCC-SCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.7e-15  Score=63.01  Aligned_cols=45  Identities=33%  Similarity=0.465  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCC-SSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.6e-15  Score=63.12  Aligned_cols=45  Identities=24%  Similarity=0.393  Sum_probs=42.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCC-CSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.3e-15  Score=62.65  Aligned_cols=45  Identities=22%  Similarity=0.161  Sum_probs=42.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKN-SGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSC-CCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.60  E-value=2e-15  Score=62.84  Aligned_cols=45  Identities=20%  Similarity=0.322  Sum_probs=42.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP-SGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSC-CSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.4e-15  Score=63.29  Aligned_cols=45  Identities=27%  Similarity=0.305  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKC-SGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCS-SCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.3e-15  Score=63.41  Aligned_cols=45  Identities=31%  Similarity=0.499  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSC-CCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.60  E-value=1.7e-15  Score=63.03  Aligned_cols=45  Identities=27%  Similarity=0.408  Sum_probs=42.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP-SGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCC-CSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.60  E-value=5.9e-15  Score=71.13  Aligned_cols=66  Identities=21%  Similarity=0.479  Sum_probs=60.2

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ...++++|.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   76 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHSKEKPFKC   76 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCC-CBCSSSCCBCSCHHHHHHHGGGSCCCCTTSC
T ss_pred             CcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCCCccchhCCHHHHHHHHHHhCCCCCeEC
Confidence            34568899999999999999999999999999999 9999999999999999999999988877554

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.8e-15  Score=62.98  Aligned_cols=45  Identities=27%  Similarity=0.392  Sum_probs=42.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCC-SSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.60  E-value=3.3e-15  Score=70.03  Aligned_cols=63  Identities=33%  Similarity=0.615  Sum_probs=56.7

Q ss_pred             CCCceecc--cccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          11 GEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        11 ~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.|.  .|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   65 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC   65 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCC-EECTTTCCEESCHHHHHHHHHHHHCCCCEEC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCC-ccCCCCCcccCCHHHHHHHHHHcCCCCCccC
Confidence            57899998  599999999999999999999999 9999999999999999999999998877544

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.3e-15  Score=67.95  Aligned_cols=59  Identities=22%  Similarity=0.535  Sum_probs=53.6

Q ss_pred             CCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC-CCccccCChhHHHHHHHHhccCC
Q psy4268           9 PSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT-LCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus         9 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~-~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      ..++++|.|..|++.|. ...|..|+++ .+.++ |.|. .|++.|.....|..|++.|....
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p-~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLP-VACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSE-EECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcC-ccCCcccCcccccHHHHHHHHHhhcccC
Confidence            45789999999999999 9999999998 88899 9999 99999999999999998776554

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=2.4e-15  Score=62.64  Aligned_cols=45  Identities=27%  Similarity=0.424  Sum_probs=42.4

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP-SGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC-CCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            578899999999999999999999999999999999999 999876

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.60  E-value=2.7e-16  Score=80.26  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             cccccc---CCCCCCceecccc-----cccccChHHHHHHHHHhhCCCCCccCCC--CccccCChhHHHHHHHHhccCCC
Q psy4268           2 LGYYFS---APSGEKRYLCDSC-----DRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus         2 l~~h~~---~h~~~~~~~c~~c-----~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      |..|+.   .|.++++|.|.+|     ++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|++.|+++++
T Consensus        19 L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   97 (155)
T 2gli_A           19 LVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEGCRKSYSRLENLKTHLRSHTGEKP   97 (155)
T ss_dssp             HHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCC-CCCCSTTCCCCCSSHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCC-ccCCCCCCCCcccCHHHHHHHHHHcCCCCC
Confidence            456665   6788888888753     3788888889999888888888 88874  99999988889999888888776


Q ss_pred             CCCC
Q psy4268          72 GALP   75 (86)
Q Consensus        72 ~~~~   75 (86)
                      ....
T Consensus        98 ~~C~  101 (155)
T 2gli_A           98 YMCE  101 (155)
T ss_dssp             EECC
T ss_pred             eeCC
Confidence            5554

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=2.6e-15  Score=62.49  Aligned_cols=45  Identities=24%  Similarity=0.355  Sum_probs=42.5

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|++.|.++++ |.|..|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSC-CSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            588899999999999999999999999999999999999 999876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=3.3e-15  Score=62.17  Aligned_cols=45  Identities=29%  Similarity=0.335  Sum_probs=42.5

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL-SGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCC-CCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCC-CCCCCC
Confidence            578899999999999999999999999999999999999 999876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=2e-15  Score=62.82  Aligned_cols=45  Identities=31%  Similarity=0.445  Sum_probs=42.5

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|++.|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP-SGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCS-SCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=2.1e-15  Score=62.74  Aligned_cols=45  Identities=29%  Similarity=0.474  Sum_probs=42.2

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +|+++|+++++|.|..|++.|.....|..|++.|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCC-CCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            689999999999999999999999999999999999999 999864

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.59  E-value=3e-16  Score=69.35  Aligned_cols=54  Identities=15%  Similarity=0.350  Sum_probs=48.4

Q ss_pred             CccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhH
Q psy4268           1 MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTS   58 (86)
Q Consensus         1 ~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~   58 (86)
                      .|..|+++|+++++|.|..|++.|.....|.   ++|.+.++ |.|..|++.|....+
T Consensus         1 ~L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~-~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            1 RIETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGT-FRCTFCHTEVEEDES   54 (62)
T ss_dssp             CCCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTE-EBCSSSCCBCEECTT
T ss_pred             ChhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCC-EECCCCCCccccCcc
Confidence            3788999999999999999999999988876   67999999 999999999987654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.58  E-value=2.5e-15  Score=76.77  Aligned_cols=73  Identities=19%  Similarity=0.320  Sum_probs=64.2

Q ss_pred             ccccccC-CCCCCc--------eecccccccccChHHHHHHHHHhhCCCCCccCCC--CccccCChhHHHHHHHHhccCC
Q psy4268           2 LGYYFSA-PSGEKR--------YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus         2 l~~h~~~-h~~~~~--------~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |..|+.. |.++.+        |.|..|++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|++.|++++
T Consensus        41 L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~L~~H~~~h~~~~  119 (155)
T 2rpc_A           41 LVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRTHTGEK  119 (155)
T ss_dssp             HHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCS-EECSCTTTCCEESCHHHHHHHHTTTCSSC
T ss_pred             HHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCc-ccCCcCCCCCccCCHHHHHHHHHhhCCCC
Confidence            4567775 777655        7899999999999999999999999999 99998  9999999999999999999988


Q ss_pred             CCCCC
Q psy4268          71 DGALP   75 (86)
Q Consensus        71 ~~~~~   75 (86)
                      +....
T Consensus       120 ~~~C~  124 (155)
T 2rpc_A          120 PFKCE  124 (155)
T ss_dssp             SBCCS
T ss_pred             CccCC
Confidence            76664

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.58  E-value=4.1e-15  Score=71.92  Aligned_cols=32  Identities=19%  Similarity=0.163  Sum_probs=23.7

Q ss_pred             HHhhCCCCCccCCCCccccCChhHHHHHHHHhc
Q psy4268          35 NYECGKLPAFPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        35 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      +.|.+.++ |.|..|++.|.....|..|++.|.
T Consensus         9 ~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~H~   40 (107)
T 1wjp_A            9 SPVENKEV-YQCRLCNAKLSSLLEQGSHERLCR   40 (107)
T ss_dssp             CCCCCCCC-CBCTTTCCBCSSHHHHHHHHHHHH
T ss_pred             cccCCCcC-eECCCCCCccCCHHHHHHHHHHCC
Confidence            34666777 888888888888888888877763

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.58  E-value=1.1e-15  Score=63.59  Aligned_cols=45  Identities=27%  Similarity=0.468  Sum_probs=42.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCS-SCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            688999999999999999999999999999999999999 999877

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.58  E-value=1.9e-15  Score=62.90  Aligned_cols=45  Identities=27%  Similarity=0.451  Sum_probs=42.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP-SGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCS-SCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999876

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.58  E-value=5.5e-15  Score=61.49  Aligned_cols=45  Identities=24%  Similarity=0.418  Sum_probs=42.1

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|++.|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCS-SCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            588999999999999999999999999999999999999 999864

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=3.9e-15  Score=62.14  Aligned_cols=45  Identities=29%  Similarity=0.467  Sum_probs=42.5

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHH-HhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMN-YECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~c~~c   49 (86)
                      .|+++|+++++|.|..|++.|.....|..|++ +|.+.++ |.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~-~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP-SGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS-SSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCC-CCCCCC
Confidence            58899999999999999999999999999999 9999999 999876

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.57  E-value=9.2e-15  Score=67.39  Aligned_cols=60  Identities=18%  Similarity=0.513  Sum_probs=55.8

Q ss_pred             ceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ||.|..|++.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCC-EECSSSCCEESSHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCC-eeCCcCChhhCCHHHHHHHHHHhcCCCCCcC
Confidence            58999999999999999999999999999 9999999999999999999999998876544

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.56  E-value=6.1e-15  Score=77.52  Aligned_cols=71  Identities=21%  Similarity=0.446  Sum_probs=37.3

Q ss_pred             cccccCCCCCCceecc--cccccccChHHHHHHH-HHh-hCCCCCccC--CCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268           3 GYYFSAPSGEKRYLCD--SCDRTYSNRSSLKRHM-NYE-CGKLPAFPC--TLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~-~~~-~~~~~~~~c--~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ..|++.|.++++|.|.  .|++.|.....|..|+ +.| .+..+ |.|  ..|++.|.....|..|++.|+++++...
T Consensus        61 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C  137 (190)
T 1tf6_A           61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV-YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC  137 (190)
T ss_dssp             HHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSC-CEECSSSSCEECSSHHHHHHHHGGGSSSCSSBC
T ss_pred             HHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcce-eeCCCCCCccccCCHHHHHHHHHHhCCCCCccC
Confidence            3455555555555555  4555555555555555 333 23344 555  5555555555555555555555544433

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.56  E-value=6.8e-15  Score=63.23  Aligned_cols=49  Identities=24%  Similarity=0.480  Sum_probs=45.1

Q ss_pred             ccCCCCCCceecccccccccChHHHHHHHH-HhhCCCCCccCCCCccccCC
Q psy4268           6 FSAPSGEKRYLCDSCDRTYSNRSSLKRHMN-YECGKLPAFPCTLCSYATKR   55 (86)
Q Consensus         6 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~c~~c~~~f~~   55 (86)
                      ...|+++++|.|..|++.|.....|..|++ +|.+.++ |.|..|++.|.+
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~-~~C~~C~k~F~~   53 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC-CCSSSSCCSSCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCC-ccCCCCCCCCCC
Confidence            346889999999999999999999999997 8999999 999999999975

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=2.2e-15  Score=69.21  Aligned_cols=52  Identities=17%  Similarity=0.409  Sum_probs=48.5

Q ss_pred             cccccc-CCCCCCceeccc--ccccccChHHHHHHHHHhhCCCCCccCCCCccccC
Q psy4268           2 LGYYFS-APSGEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATK   54 (86)
Q Consensus         2 l~~h~~-~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~   54 (86)
                      |..|++ .|.++++|.|..  |++.|.....|..|+++|.+.++ |.|..|++.|.
T Consensus        25 L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~C~k~F~   79 (79)
T 2dlk_A           25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFSGPSSG   79 (79)
T ss_dssp             HHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCCSSSCCCC
T ss_pred             HHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC-eeCCCCCCCCC
Confidence            567888 799999999999  99999999999999999999999 99999999884

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.55  E-value=1.1e-14  Score=60.52  Aligned_cols=44  Identities=27%  Similarity=0.425  Sum_probs=41.1

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCS-SSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=1.1e-14  Score=60.50  Aligned_cols=45  Identities=27%  Similarity=0.516  Sum_probs=41.5

Q ss_pred             cccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      ..|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         1 ~~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2em3_A            1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCC-CCSCC
T ss_pred             CCCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            3688999999999999999999999999999999999999 98864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.55  E-value=1.7e-15  Score=70.24  Aligned_cols=54  Identities=22%  Similarity=0.506  Sum_probs=38.3

Q ss_pred             ceec--ccccccccChHHHHHHHHHhhCCCCCccCCC--CccccCChhHHHHHHHHhcc
Q psy4268          14 RYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        14 ~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~   68 (86)
                      ||.|  ..|++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|++.|++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCC-EECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCC-eeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            4667  6677777777777777777777766 77766  77777777777777766665

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.8e-17  Score=75.16  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=58.3

Q ss_pred             CccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268           1 MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus         1 ~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      .|..|+++|.++++|.|..|++.|.....|..       .++ |.|..|++.|.....|..|++.|+++++...
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~-~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C   70 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKT-PMCEKCRKDSCQEAALNKDEGNESGKKTSGP   70 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSS-CCCHHHHHTCSCCCSSCCCSSCCCCCCCSSC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCC-CCCCCCChhhcCHHHHHHHHHhhcCCCCCCC
Confidence            37889999999999999999999998887765       567 9999999999999999999988888877543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=3.4e-16  Score=76.54  Aligned_cols=71  Identities=11%  Similarity=0.137  Sum_probs=60.6

Q ss_pred             ccccccC--CCCCCcee-cccccccc--cChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268           2 LGYYFSA--PSGEKRYL-CDSCDRTY--SNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus         2 l~~h~~~--h~~~~~~~-c~~c~~~~--~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |..|++.  |.+.+++. |..|++.|  .....|..|++.|.++++ |.|..|++.|.....|..|++.++......
T Consensus        35 L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           35 LTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV-LKCMYCGHSFESLQDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             HHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSS-CBCSSSCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred             HHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcc-eECCCCCCccCCHHHHHHHHHHhCCcccCC
Confidence            4567776  66666655 99999998  889999999999999999 999999999999999999999988765543

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.3e-14  Score=60.34  Aligned_cols=44  Identities=25%  Similarity=0.398  Sum_probs=41.0

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP-SGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSC-CCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 99863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=1.5e-14  Score=60.06  Aligned_cols=44  Identities=32%  Similarity=0.490  Sum_probs=41.1

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSC-SCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98863

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=1.1e-14  Score=60.60  Aligned_cols=44  Identities=25%  Similarity=0.475  Sum_probs=41.1

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCC-CSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 99864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=1.3e-14  Score=60.22  Aligned_cols=44  Identities=27%  Similarity=0.460  Sum_probs=41.1

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP-SGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCC-CSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98864

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.54  E-value=1.7e-14  Score=75.84  Aligned_cols=66  Identities=20%  Similarity=0.375  Sum_probs=59.8

Q ss_pred             ccccc-cCC-CCCCceec--ccccccccChHHHHHHHHHhhCCCCCccCCC--CccccCChhHHHHHHHHhcc
Q psy4268           2 LGYYF-SAP-SGEKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus         2 l~~h~-~~h-~~~~~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |..|+ ..| .++++|.|  ..|++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|++.|++
T Consensus        90 l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A           90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             HHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCS-SBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             HHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCC-ccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            45677 677 57889999  8899999999999999999999999 99987  99999999999999988887

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.9e-14  Score=59.72  Aligned_cols=44  Identities=27%  Similarity=0.478  Sum_probs=41.0

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCC-SSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 99864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.5e-14  Score=60.17  Aligned_cols=44  Identities=27%  Similarity=0.476  Sum_probs=41.1

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCC-SSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98863

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.53  E-value=1.5e-14  Score=58.98  Aligned_cols=42  Identities=24%  Similarity=0.446  Sum_probs=38.6

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      |+++|+++++|.|..|++.|.....|..|+++|.++++ |.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG-PSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCS-CCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCC-CCCC
Confidence            67889999999999999999999999999999999988 8874

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.53  E-value=2.7e-14  Score=64.54  Aligned_cols=60  Identities=28%  Similarity=0.535  Sum_probs=53.3

Q ss_pred             ccCCCCCCceeccc--ccccccChHHHHHHHHHhhCCCCCccCCC--CccccCChhHHHHHHHHh
Q psy4268           6 FSAPSGEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRK   66 (86)
Q Consensus         6 ~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~   66 (86)
                      ...++..++|.|..  |++.|.....|..|++.|.+.++ |.|..  |++.|.....|..|++.|
T Consensus         9 ~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A            9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCS-EECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCC-ccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34566789999998  99999999999999999999999 99964  999999999999997543

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.7e-14  Score=58.77  Aligned_cols=42  Identities=31%  Similarity=0.434  Sum_probs=38.3

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      |+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG-PSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSS-CCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            67889999999999999999999999999999999988 8874

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.8e-14  Score=59.87  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=41.0

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH-SGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCB-TTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.9e-14  Score=59.23  Aligned_cols=43  Identities=26%  Similarity=0.444  Sum_probs=40.0

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG-PSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC-SCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC-CCCC
Confidence            688999999999999999999999999999999999988 8874

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.4e-14  Score=60.20  Aligned_cols=44  Identities=30%  Similarity=0.503  Sum_probs=41.0

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSC-CCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.5e-14  Score=60.15  Aligned_cols=44  Identities=20%  Similarity=0.338  Sum_probs=41.0

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCS-SSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98863

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.7e-14  Score=59.89  Aligned_cols=44  Identities=25%  Similarity=0.460  Sum_probs=40.9

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCC-CSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 98863

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=2.3e-14  Score=59.55  Aligned_cols=44  Identities=27%  Similarity=0.455  Sum_probs=40.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCC-CSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 98863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.7e-14  Score=59.98  Aligned_cols=44  Identities=32%  Similarity=0.471  Sum_probs=40.9

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCC-CCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 98863

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.7e-14  Score=59.92  Aligned_cols=44  Identities=25%  Similarity=0.437  Sum_probs=40.9

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSS-SCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 98864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.5e-14  Score=60.10  Aligned_cols=44  Identities=30%  Similarity=0.493  Sum_probs=40.9

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCC-CCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.9e-14  Score=59.25  Aligned_cols=44  Identities=27%  Similarity=0.373  Sum_probs=40.7

Q ss_pred             cccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      ..|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|.
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2emb_A            1 GSSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSG-PSSG   44 (44)
T ss_dssp             CCCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCC-TTCC
T ss_pred             CCcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-cCCC
Confidence            3689999999999999999999999999999999999998 8874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.8e-14  Score=59.83  Aligned_cols=44  Identities=20%  Similarity=0.464  Sum_probs=40.9

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP-SGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCC-SCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 98863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=2.2e-14  Score=59.64  Aligned_cols=44  Identities=25%  Similarity=0.367  Sum_probs=40.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS-SGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCS-CSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            588999999999999999999999999999999999998 98863

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.6e-14  Score=59.96  Aligned_cols=44  Identities=30%  Similarity=0.563  Sum_probs=41.0

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p-~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCS-SCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCC-cCCCC
Confidence            588999999999999999999999999999999999999 98864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.6e-14  Score=59.99  Aligned_cols=44  Identities=30%  Similarity=0.513  Sum_probs=40.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCC-SSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 98863

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.7e-14  Score=59.97  Aligned_cols=44  Identities=27%  Similarity=0.379  Sum_probs=40.6

Q ss_pred             cccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      ..|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|.
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (46)
T 2en3_A            1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP-SGPS   44 (46)
T ss_dssp             CCCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCC-SSCS
T ss_pred             CccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCC-CCCC
Confidence            3688999999999999999999999999999999999998 9886

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2e-14  Score=59.66  Aligned_cols=44  Identities=25%  Similarity=0.500  Sum_probs=41.0

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCS-SCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98863

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=2.3e-14  Score=58.97  Aligned_cols=43  Identities=26%  Similarity=0.405  Sum_probs=39.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG-PSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCS-SCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCC-CCCC
Confidence            688999999999999999999999999999999999988 8874

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.1e-14  Score=59.66  Aligned_cols=44  Identities=27%  Similarity=0.460  Sum_probs=40.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|++.|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCC-SSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98863

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.8e-14  Score=59.25  Aligned_cols=43  Identities=23%  Similarity=0.398  Sum_probs=39.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG-PSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSS-SCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCC-CCCC
Confidence            688999999999999999999999999999999999988 8874

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.5e-14  Score=59.43  Aligned_cols=44  Identities=23%  Similarity=0.396  Sum_probs=40.6

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS-SGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTC-CCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            588999999999999999999999999999999999999 98863

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.51  E-value=1.4e-16  Score=74.74  Aligned_cols=65  Identities=23%  Similarity=0.347  Sum_probs=59.3

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |..|+++|.++++|.|..|++.|.....|..|++.+.+ .+ |.|..|++.|.....|..|++.+++
T Consensus        19 L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~-~~c~~C~~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LP-ILEDKVEELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-Cc-chHHHHHHHHHHHhhhHHHHHHHHH
Confidence            56788899999999999999999999999999998875 56 9999999999999999999988764

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.9e-14  Score=59.22  Aligned_cols=44  Identities=32%  Similarity=0.473  Sum_probs=41.1

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      ++++|+++++|.|..|++.|.....|..|++.|.+.++ |.|..|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP-SGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCC-CSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCC-CCCCCC
Confidence            56789999999999999999999999999999999999 999876

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.3e-14  Score=58.41  Aligned_cols=41  Identities=24%  Similarity=0.500  Sum_probs=38.2

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPC   46 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   46 (86)
                      |+++|+++++|.|..|++.|.....|..|+++|.++++ |.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP-SSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCS-SCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCC-CCC
Confidence            78899999999999999999999999999999999988 876

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.50  E-value=3.8e-14  Score=58.60  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=40.3

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCc
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCS   50 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~   50 (86)
                      ..|+++++|.|..|++.|.....|..|+++|.+.++ |.|..||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~-~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG-KSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCC-CCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCC-CCCcCCC
Confidence            468999999999999999999999999999999999 9999986

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.3e-14  Score=59.15  Aligned_cols=42  Identities=31%  Similarity=0.551  Sum_probs=38.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPC   46 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   46 (86)
                      +|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP-SSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSC-CCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCC-CCC
Confidence            478899999999999999999999999999999999988 876

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.50  E-value=3.9e-14  Score=57.68  Aligned_cols=41  Identities=27%  Similarity=0.497  Sum_probs=38.0

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPC   46 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   46 (86)
                      |+++|+++++|.|..|++.|.....|..|+++|.++++ |.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~-~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP-SSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCC-CCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCC-CCC
Confidence            67889999999999999999999999999999999988 876

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.9e-14  Score=59.20  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=39.8

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG-PSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCS-CCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCC-CCCC
Confidence            588999999999999999999999999999999999988 8874

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.8e-14  Score=59.28  Aligned_cols=44  Identities=25%  Similarity=0.367  Sum_probs=40.8

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP-SGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCC-CSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCC-CCCCCC
Confidence            46789999999999999999999999999999999999 999876

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2.3e-14  Score=59.00  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=40.0

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG-PSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCC-CSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCC-CCCC
Confidence            688999999999999999999999999999999999998 8873

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=3.3e-14  Score=58.99  Aligned_cols=44  Identities=36%  Similarity=0.529  Sum_probs=40.9

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|++.|.+.++ |.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP-SGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCC-CCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            688999999999999999999999999999999999999 98863

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.9e-14  Score=59.24  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=40.2

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhC-CCCCccCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECG-KLPAFPCT   47 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~-~~~~~~c~   47 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+ .++ |.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~-~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS-GPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTT-SSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCC-CCCC
Confidence            588999999999999999999999999999999999 888 9886

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=3e-14  Score=59.24  Aligned_cols=44  Identities=27%  Similarity=0.434  Sum_probs=40.5

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERP-SGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCS-CTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCC-CCCCC
Confidence            478899999999999999999999999999999999999 98863

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=3.1e-14  Score=65.05  Aligned_cols=69  Identities=19%  Similarity=0.173  Sum_probs=60.7

Q ss_pred             CccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268           1 MLGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus         1 ~l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      .|..|+..|.+++++.|..|++.| ....|..|+ .+.+.++ +.|..|++.|.. ..|..|++.+.+++.+.
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~-~~~~L~~H~-~~c~~~~-~~C~~C~~~~~~-~~l~~H~~~c~~~~~~~   72 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLEL-SILKLKEHE-DYCGART-ELCGNCGRNVLV-KDLKTHPEVCGREGSGP   72 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEE-CHHHHHHHH-HHHHHCE-EECSSSCCEEET-TGGGTHHHHBTTBSSSC
T ss_pred             HHHhhCcccCCCcccCCcccChHh-hHHHHHHHH-hHcCCCc-eEcccCCCcCcH-HHHHHHHHHccCCcCCC
Confidence            377899999999999999999999 489999999 8899999 999999998875 78999998888876543

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=3e-13  Score=63.94  Aligned_cols=62  Identities=24%  Similarity=0.261  Sum_probs=54.0

Q ss_pred             CceecccccccccChHHHHHHHHH-hhCCCCC-------ccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNY-ECGKLPA-------FPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~-~~~~~~~-------~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ..+.|..|++.|.....|..|++. |.+.++.       |.|..|++.|.....|..|++.|+++++...
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   93 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS   93 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSS
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            347799999999999999999998 8776431       6899999999999999999999999987654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=7.3e-14  Score=57.49  Aligned_cols=42  Identities=29%  Similarity=0.357  Sum_probs=38.7

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPC   46 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   46 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG-PSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSC-CCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCC-CCC
Confidence            588999999999999999999999999999999999888 765

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=3.3e-14  Score=57.98  Aligned_cols=41  Identities=27%  Similarity=0.534  Sum_probs=37.6

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPC   46 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   46 (86)
                      |+++|+++++|.|..|++.|.....|..|++.|.+.++ |.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~-~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP-SSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSS-TTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCC-CCC
Confidence            77889999999999999999999999999999999888 876

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.47  E-value=1.5e-13  Score=63.58  Aligned_cols=62  Identities=32%  Similarity=0.545  Sum_probs=57.1

Q ss_pred             ccccccCCCCCCceeccc--ccccccChHHHHHHHHHhhCCCCCccCCC---CccccCChhHHHHHHHHhc
Q psy4268           2 LGYYFSAPSGEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTL---CSYATKRKTSLASHYYRKH   67 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~---c~~~f~~~~~l~~h~~~~~   67 (86)
                      |..|+++|.++++|.|..  |++.|.....|..|++.|.+    |.|..   |++.|.....|..|++.|+
T Consensus        19 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~----~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           19 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             HHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS----EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC----CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            567888999999999998  99999999999999999987    78999   9999999999999998764

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=9.6e-14  Score=57.10  Aligned_cols=43  Identities=16%  Similarity=0.239  Sum_probs=39.2

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.++++ |.|.
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESG-PSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCC-CCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCC-CCCC
Confidence            478889999999999999999999999999999999988 8874

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=5.8e-14  Score=58.29  Aligned_cols=44  Identities=32%  Similarity=0.526  Sum_probs=40.2

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .|+++|+++++|.|..|++.|.....|..|+++|.+.++ |.|..
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCC-CCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCC-CCCCC
Confidence            478899999999999999999999999999999999998 98863

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.46  E-value=6.4e-14  Score=58.72  Aligned_cols=44  Identities=23%  Similarity=0.424  Sum_probs=41.0

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCcc
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSY   51 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~   51 (86)
                      ..|.++++|.|..|++.|.....|..|+++|.++++ |.|..|++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C~k   48 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSSG   48 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCC-CCSCCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCC-ccCCCCCC
Confidence            357889999999999999999999999999999999 99999985

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.4e-13  Score=56.41  Aligned_cols=43  Identities=21%  Similarity=0.335  Sum_probs=39.0

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL   48 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   48 (86)
                      .+++|+++++|.|..|++.|.....|..|++.|.++++ |.|..
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP-SGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCC-SSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCC-CCCCC
Confidence            46789999999999999999999999999999999999 98863

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.8e-13  Score=57.17  Aligned_cols=45  Identities=27%  Similarity=0.392  Sum_probs=41.4

Q ss_pred             ccccCCCCCCceecc--cccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268           4 YYFSAPSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      .|.++|+++++|.|.  .|++.|.....|..|+++|.+.++ |.|..|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCS-CSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence            467789999999998  899999999999999999999999 999876

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.43  E-value=1.1e-12  Score=62.43  Aligned_cols=65  Identities=26%  Similarity=0.542  Sum_probs=58.2

Q ss_pred             CCCCceeccc--ccccccChHHHHHHHHHhhCCCCCccCC--CCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          10 SGEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCT--LCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        10 ~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      ...++|.|..  |++.|.....|..|++.|.+.++ |.|.  .|++.|.....|..|++.|+++++....
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   79 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG   79 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCC-EECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCS
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCC-eeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECC
Confidence            3467899997  99999999999999999999999 9996  6999999999999999999998876543

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.43  E-value=1.1e-14  Score=63.97  Aligned_cols=40  Identities=23%  Similarity=0.409  Sum_probs=37.1

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      |..|+++|+|++||.|..|++.|.....|..|+++|+|+.
T Consensus        20 L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C           20 LSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             HHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             HHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6789999999999999999999999999999999998864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.42  E-value=3.5e-13  Score=62.89  Aligned_cols=62  Identities=27%  Similarity=0.551  Sum_probs=56.5

Q ss_pred             CCceeccc--ccccccChHHHHHHHHHhhCCCCCccCC--CCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          12 EKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCT--LCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        12 ~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      .++|.|..  |++.|.....|..|++.|.+.++ |.|.  .|++.|.....|..|++.|+++++...
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~-~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C   68 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC   68 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCC-EECCSTTTCCEESSHHHHHHHHHHHHCCCCEEC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCC-cCCCCCCCCCccCCHHHHHHHHHHcCCCCCccC
Confidence            46799999  99999999999999999999999 9997  699999999999999999998876544

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=2.2e-13  Score=56.22  Aligned_cols=43  Identities=21%  Similarity=0.462  Sum_probs=38.9

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      .+.++|+++++|.|..|++.|.....|..|+++|.++++ |.|.
T Consensus         2 s~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~~C~   44 (45)
T 2epu_A            2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS-GPSS   44 (45)
T ss_dssp             CCCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCC-CCSC
T ss_pred             CCCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCC-CCCC
Confidence            356789999999999999999999999999999999998 9886

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.41  E-value=8e-14  Score=59.79  Aligned_cols=50  Identities=14%  Similarity=0.339  Sum_probs=38.8

Q ss_pred             ccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268          22 RTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus        22 ~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      +.|.....|..|++.|.+.++ |.|..|++.|.....|..|++.|+++++.
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQP-ATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCC-EECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCC-ccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            456666677778888888888 88888888888888888888888877653

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=6.4e-13  Score=54.36  Aligned_cols=40  Identities=33%  Similarity=0.602  Sum_probs=36.0

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      +.|+++++|.|..|++.|.....|..|++.|.+.++ |.|.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKS-GPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTC-SSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCC-ccCC
Confidence            468899999999999999999999999999999988 8886

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.38  E-value=2.8e-13  Score=58.06  Aligned_cols=42  Identities=19%  Similarity=0.201  Sum_probs=39.4

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCc
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAF   44 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   44 (86)
                      |..|++.|+++++|.|..|++.|.....|..|+++|.++++ |
T Consensus        12 l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp-~   53 (54)
T 1yui_A           12 TEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKP-G   53 (54)
T ss_dssp             CCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSC-C
T ss_pred             hhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCC-C
Confidence            67889999999999999999999999999999999999887 6

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=5e-13  Score=54.07  Aligned_cols=39  Identities=28%  Similarity=0.595  Sum_probs=34.9

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccC
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPC   46 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   46 (86)
                      ++|+++++|.|..|++.|.....|..|+++|.++++ |.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP-SSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC-SCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC-cCC
Confidence            468899999999999999999999999999999888 876

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=4.2e-13  Score=61.31  Aligned_cols=44  Identities=32%  Similarity=0.517  Sum_probs=41.4

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPC   46 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   46 (86)
                      |..|++.|.++++|.|.+|++.|.....|..|+++|.++++ |.|
T Consensus        34 l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p-~~C   77 (77)
T 2cot_A           34 LSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP-SSG   77 (77)
T ss_dssp             HHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCC-CCC
T ss_pred             HHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCC-CCC
Confidence            56799999999999999999999999999999999999998 876

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=5.2e-12  Score=49.82  Aligned_cols=35  Identities=23%  Similarity=0.569  Sum_probs=26.3

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHhhCCC
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      ++|+++++|.|..|++.|.....|..|+++|.+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            46777777777777777777777777777777654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.28  E-value=6.4e-12  Score=49.55  Aligned_cols=35  Identities=26%  Similarity=0.468  Sum_probs=29.4

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   39 (86)
                      |+++|+++++|.|..|++.|.....|..|++.|.+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            67788888888888888888888888888887765

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.24  E-value=1.1e-11  Score=49.47  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=26.8

Q ss_pred             CCCCCceecccccccccChHHHHHHHHHhhCCCCCccC
Q psy4268           9 PSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPC   46 (86)
Q Consensus         9 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   46 (86)
                      |+++++|.|..|++.|.....|..|+++|.++++ |.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA-RLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCT-TTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcc-cee
Confidence            4567777777777777777777777777777776 654

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.24  E-value=4e-12  Score=59.67  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=48.4

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      .+..+|+++++|.|..|++.|.....|..|+++|.++++ |.|..|.+    ...+..|++.+.+..
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp-~~C~~~~~----~~~~~~~~~~~~~~~   76 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQ-KRAKRQER----RKQLLSKQKYADGAF   76 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHH-HHCCCCSC----CCCCCCCCCCCCCSS
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCC-cccchhhh----HHHHHhhhccccccc
Confidence            445679999999999999999999999999999999999 99987643    333444444555433

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.22  E-value=2.8e-12  Score=58.10  Aligned_cols=41  Identities=29%  Similarity=0.596  Sum_probs=38.4

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLP   42 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   42 (86)
                      |..|++.|.++++|.|..|++.|.....|..|+++|.++++
T Consensus        33 l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             HHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            56788999999999999999999999999999999999877

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.21  E-value=2.2e-11  Score=54.36  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=16.7

Q ss_pred             hCCCCCccCCC--CccccCChhHHHHHH-HHhccCCCCCC
Q psy4268          38 CGKLPAFPCTL--CSYATKRKTSLASHY-YRKHVGEDGAL   74 (86)
Q Consensus        38 ~~~~~~~~c~~--c~~~f~~~~~l~~h~-~~~~~~~~~~~   74 (86)
                      ++++| |.|..  |++.|.+..+|..|+ +.|++++++..
T Consensus        23 sGEKP-YkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           23 SPYRP-YRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             CSSCS-CBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             cCCCC-eECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            34444 55532  555555555555553 23444444433

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.20  E-value=3e-11  Score=46.97  Aligned_cols=34  Identities=21%  Similarity=0.629  Sum_probs=23.9

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhCCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      +|+++++|.|..|++.|.....|..|++.|.+.+
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            3667777777777777777777777777766654

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=8.6e-12  Score=51.56  Aligned_cols=42  Identities=24%  Similarity=0.329  Sum_probs=37.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++....
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRP-YECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSS-EECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcC-cCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            5667888999 99999999999999999999999998876653

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.19  E-value=5.2e-12  Score=51.20  Aligned_cols=40  Identities=25%  Similarity=0.360  Sum_probs=35.1

Q ss_pred             HHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          34 MNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        34 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      +++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         2 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            2 SSGSSGENP-YECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CSSSSSCCS-EECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCC-ccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            456888899 9999999999999999999999998877543

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=8.8e-12  Score=50.47  Aligned_cols=39  Identities=18%  Similarity=0.337  Sum_probs=34.6

Q ss_pred             HHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          34 MNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        34 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      +++|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         2 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (42)
T 2yte_A            2 SSGSSGEKP-YSCAECKETFSDNNRLVQHQKMHTVKSGPS   40 (42)
T ss_dssp             CSSSCSCCS-CBCTTTCCBCSSHHHHHHHHHHTSCCSSCC
T ss_pred             CcCcCCCCC-eECCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            456888899 999999999999999999999999887754

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=7.5e-12  Score=51.74  Aligned_cols=42  Identities=21%  Similarity=0.368  Sum_probs=37.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++....
T Consensus         3 h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERP-FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCS-CCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCC-eECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5667889999 99999999999999999999999999876653

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.19  E-value=3.6e-11  Score=46.68  Aligned_cols=33  Identities=24%  Similarity=0.553  Sum_probs=20.4

Q ss_pred             CCCCCceecccccccccChHHHHHHHHHhhCCC
Q psy4268           9 PSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus         9 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      |+++++|.|..|++.|.....|..|++.|.+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            556666666666666666666666666655543

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=7.3e-12  Score=51.75  Aligned_cols=42  Identities=17%  Similarity=0.234  Sum_probs=36.9

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++....
T Consensus         3 H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERH-YECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCC-EECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCcccCCCCC-CCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            5567888999 99999999999999999999999998876553

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.18  E-value=9.6e-12  Score=51.40  Aligned_cols=41  Identities=20%  Similarity=0.283  Sum_probs=36.7

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emj_A            3 SGSSGTGEKP-FECAECGKSFSISSQLATHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCS-EECSSSSCEESSHHHHHHHHHHHTTSCSSSS
T ss_pred             CCCCCCCCCC-EECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5667888999 9999999999999999999999999887655

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=7.9e-12  Score=51.63  Aligned_cols=41  Identities=24%  Similarity=0.377  Sum_probs=36.7

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em3_A            3 SGSSGTGEKP-YECKVCSKAFTQKAHLAQHQKTHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSSCCS-EECSSSCCEESSHHHHHHHHHHHCCCCCCCS
T ss_pred             CCCCCCCCcC-eECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5667888999 9999999999999999999999999887655

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.5e-11  Score=50.78  Aligned_cols=42  Identities=19%  Similarity=0.229  Sum_probs=37.1

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++....
T Consensus         3 h~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKL-FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCC-CBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCC-EECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4567888899 99999999999999999999999998876553

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=4.7e-12  Score=52.38  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=37.0

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++....
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERH-YECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCC-EECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cccCcCCCCC-eECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5567888999 99999999999999999999999998876553

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=6.3e-12  Score=51.96  Aligned_cols=41  Identities=17%  Similarity=0.260  Sum_probs=36.7

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoz_A            3 SGSSGTGEKP-YSCNVCGKAFVLSAHLNQHLRVHTQETLSGP   43 (46)
T ss_dssp             SCCCCSSCCS-EEETTTTEEESSHHHHHHHHHHHSSCCSSSC
T ss_pred             ccccCCCCCC-eECcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            5667888999 9999999999999999999999999887654

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.17  E-value=8.8e-12  Score=51.52  Aligned_cols=41  Identities=20%  Similarity=0.277  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emk_A            3 SGSSGTGEKP-YECKECGKAFSQTTHLIQHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSSSCS-CBCSSSCCBCSCHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCccCCCCc-eECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            5667888999 9999999999999999999999999887654

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=8.6e-12  Score=51.56  Aligned_cols=41  Identities=17%  Similarity=0.218  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoh_A            3 SGSSGSGKKP-YECKECRKTFIQIGHLNQHKRVHTGERSSGP   43 (46)
T ss_dssp             CCCSCCCSCS-CCCSSSCCCCSSHHHHHHHHHHCSSCCSCST
T ss_pred             CCCCcCCCCC-cCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            4567888899 9999999999999999999999998887654

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.1e-11  Score=51.17  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=37.1

Q ss_pred             HHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          32 RHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        32 ~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      .|+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         2 ~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytj_A            2 SSGSSGTGEKP-YICAECGKAFTIRSNLIKHQKIHTKQKPSGP   43 (46)
T ss_dssp             CSSCTTSSCCS-EECSSSCCEESSHHHHHHHHHHTSCCCCSSC
T ss_pred             CcccCCCCCcC-eECCCCChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            35677889999 9999999999999999999999999887654

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=7.7e-12  Score=51.67  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=36.9

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |++.|.+.++ |.|..|++.|.....|..|++.|+++++....
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENP-FICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCS-CBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCC-EECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5567888899 99999999999999999999999998876653

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=7.4e-12  Score=51.69  Aligned_cols=42  Identities=17%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++....
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKP-YECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCS-SCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCC-cCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5667888899 99999999999999999999999998876553

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.3e-11  Score=50.93  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=37.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |++.|.+.++ |.|..|++.|.....|..|++.|+++++....
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKP-YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCS-EECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcC-ccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            5667888999 99999999999999999999999998876553

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=4e-12  Score=61.12  Aligned_cols=48  Identities=19%  Similarity=0.405  Sum_probs=42.2

Q ss_pred             cccccc-CC---CCCCceecccccccccChHHHHHH-HHHhhCCCCCccCCCCc
Q psy4268           2 LGYYFS-AP---SGEKRYLCDSCDRTYSNRSSLKRH-MNYECGKLPAFPCTLCS   50 (86)
Q Consensus         2 l~~h~~-~h---~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~~~~~~c~~c~   50 (86)
                      |..|++ .|   .++++|.|..|++.|.....|..| +++|.++++ |.|..+.
T Consensus        34 L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp-y~C~~~~   86 (102)
T 2ghf_A           34 FTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN-FKLTMVK   86 (102)
T ss_dssp             HHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCC-EEEEECC
T ss_pred             HHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCC-eeCCccc
Confidence            566876 58   678999999999999999999999 899999999 9998754

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.3e-11  Score=50.91  Aligned_cols=41  Identities=22%  Similarity=0.338  Sum_probs=36.7

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eow_A            3 SGSSGTGEKP-YKCNECGKAFRARSSLAIHQATHSGEKPSGP   43 (46)
T ss_dssp             CCCCSCCCCC-EECTTSCCEESSHHHHHHHHHHHCCCSCSCT
T ss_pred             ccCCCCCCCC-eeccccCChhcCHHHHHHHHHHcCCCCCCCC
Confidence            5567888999 9999999999999999999999999887655

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=7e-12  Score=51.80  Aligned_cols=41  Identities=20%  Similarity=0.281  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq2_A            3 SGSSGTGGKP-YQCNECGKAFSQTSKLARHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSSSCS-SSCCSSCCCCSSHHHHHHHGGGGCCCCCCCC
T ss_pred             cccccCCCCC-eECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            5567888999 9999999999999999999999999887655

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.3e-11  Score=50.48  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=35.5

Q ss_pred             HHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          34 MNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        34 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      +++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         2 ~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (44)
T 2emx_A            2 SSGSSGEKP-FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP   41 (44)
T ss_dssp             CCCCSSCCC-EECSSSSCEESSHHHHHHHHHHHTSSCSCSC
T ss_pred             CCCcCCCcC-ccCCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            456888899 9999999999999999999999999887654

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.2e-11  Score=51.08  Aligned_cols=41  Identities=20%  Similarity=0.300  Sum_probs=36.7

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            3 SGSSGTGEKP-FQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCCSCCCCS-EECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             cccccCCCCC-eeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            5667888999 9999999999999999999999999887655

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=7.9e-12  Score=51.18  Aligned_cols=40  Identities=18%  Similarity=0.316  Sum_probs=35.7

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |+++|.++++ |.|..|++.|.....|..|++.|+++++..
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2yu5_A            3 SGSSGAGENP-FKCSKCDRVFTQRNYLVQHERTHARKSGPS   42 (44)
T ss_dssp             CSCCCSCCCS-EECSSSSCEESSSHHHHHHHHHCCCCCSSC
T ss_pred             CccccCCCCC-eECCCCCchhCCHHHHHHHhHhcCCCCCCC
Confidence            5667889999 999999999999999999999999887754

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.3e-11  Score=50.41  Aligned_cols=40  Identities=20%  Similarity=0.316  Sum_probs=35.8

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eof_A            3 SGSSGTGEKP-YECNECQKAFNTKSNLMVHQRTHTGESGPS   42 (44)
T ss_dssp             CSSCCSCCCS-EECTTTCCEESCHHHHHHHHHHTTTSSCSC
T ss_pred             CccCCCCCCC-eECCCCCcccCCHhHHHHHHHHhCCCCCCC
Confidence            5567888999 999999999999999999999999887754

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=9.3e-12  Score=51.41  Aligned_cols=41  Identities=20%  Similarity=0.317  Sum_probs=36.6

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emh_A            3 SGSSGTGERP-YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP   43 (46)
T ss_dssp             CCCSCSCCCS-EECTTTCCEESSHHHHHHHHHHHHCSSCSSS
T ss_pred             CCCCCCCCCC-cCCCCCCchhCCHHHHHHHHHhcCCCCCCCC
Confidence            5667889999 9999999999999999999999999887654

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.1e-11  Score=51.18  Aligned_cols=41  Identities=15%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eq4_A            3 SGSSGTGEKL-YNCKECGKSFSRAPCLLKHERLHSGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCCC-CCBTTTTBCCSCHHHHHHHHHHCCSSSCCCC
T ss_pred             CcccCCCCCC-eECCCCCCccCchHHHHHHHHhcCCCCCCCC
Confidence            5667889999 9999999999999999999999999887654

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1e-11  Score=51.34  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoo_A            3 SGSSGSGERP-YGCNECGKNFGRHSHLIEHLKRHFREKSSGP   43 (46)
T ss_dssp             CCCCCSCCCC-EECSSSCCEESSHHHHHHHHHHHHSTTSSCC
T ss_pred             CCCCCCCCCC-EEccccCcccCCHHHHHHHHHHHcCCCCCCC
Confidence            5667889999 9999999999999999999999999887654

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=51.04  Aligned_cols=41  Identities=15%  Similarity=0.241  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enf_A            3 SGSSGTGEKP-YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCS-CBCSSSCCBCSSHHHHHHHHTTTTTSSCCCC
T ss_pred             CCcCCCCCcC-eECCCCCcccCCHHHHHHHHHhhCCCCCCCC
Confidence            5567888999 9999999999999999999999999887655

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.1e-11  Score=51.20  Aligned_cols=41  Identities=20%  Similarity=0.231  Sum_probs=36.7

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emp_A            3 SGSSGTGVKP-YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP   43 (46)
T ss_dssp             CCSCSSCCCS-EECSSSCCEESCHHHHHHHHHHHHCCSCCSC
T ss_pred             cccccCCCcC-eECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            5667889999 9999999999999999999999999887654

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=7.9e-12  Score=51.67  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            3 SGSSGTGEKP-YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCCCCCSCCC-EECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             cccccCCCCC-EECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            5667888899 9999999999999999999999999887654

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.15  E-value=1e-11  Score=51.32  Aligned_cols=41  Identities=15%  Similarity=0.229  Sum_probs=36.6

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ema_A            3 SGSSGTGEKR-YKCNECGKVFSRNSQLSQHQKIHTGEKPSGP   43 (46)
T ss_dssp             SCSSCTTSCC-EECSSSCCEESSHHHHHHHHTGGGCCCCCSS
T ss_pred             CccCCCCCcC-cCCCCCcchhCCHHHHHHHHHhcCCCCCCCC
Confidence            5667889999 9999999999999999999999999887654

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.1e-11  Score=51.21  Aligned_cols=41  Identities=24%  Similarity=0.312  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emy_A            3 SGSSGTGENP-YECHECGKAFSRKYQLISHQRTHAGEKPSGP   43 (46)
T ss_dssp             CCCCCCSSCC-EECSSSCCEESSHHHHHHHHHHHTTSCCSCS
T ss_pred             CCCCCCCCcC-cCCCCCCcccCcHHHHHHHHHHcCCCCCCCC
Confidence            5567888899 9999999999999999999999999887654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.15  E-value=2e-11  Score=56.53  Aligned_cols=51  Identities=18%  Similarity=0.386  Sum_probs=43.7

Q ss_pred             ccccccCCCCC----CceecccccccccChHHHHHHHHHhhCCCCCccCCCCcccc
Q psy4268           2 LGYYFSAPSGE----KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYAT   53 (86)
Q Consensus         2 l~~h~~~h~~~----~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f   53 (86)
                      |..|+..|.+.    ++|.|..|++.|.....|..|++.|.+..+ +.|..|+..|
T Consensus        31 l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~-~~~~~~~~~~   85 (86)
T 1x6h_A           31 LDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG-VEGENSGPSS   85 (86)
T ss_dssp             HHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCS-CCCCCCCCCC
T ss_pred             HHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCC-cccCCCCCCC
Confidence            45677655443    799999999999999999999999999998 9999998765

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=50.92  Aligned_cols=41  Identities=22%  Similarity=0.325  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytf_A            3 SGSSGTGEKP-FECSECQKAFNTKSNLIVHQRTHTGEKPSGP   43 (46)
T ss_dssp             CCCSSCCCCS-EECSSSCCEESSHHHHHHHHHTSCSSSSSCC
T ss_pred             CCCCCCCCCC-cCCCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5567888899 9999999999999999999999999887655

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=8.8e-12  Score=51.49  Aligned_cols=41  Identities=17%  Similarity=0.278  Sum_probs=36.6

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ep3_A            3 SGSSGTGEKP-YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP   43 (46)
T ss_dssp             CCSSSSCCCS-EECSSSCCEESSHHHHHHHHTTTTTSCCCCT
T ss_pred             CCCCCCCCCC-eECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            5667889999 9999999999999999999999999887654

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.15  E-value=1.8e-11  Score=50.58  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ely_A            3 SGSSGTGEKP-FKCVECGKGFSRRSALNVHHKLHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCS-BCCSSSCCCBSSTTHHHHHHHHHSCCSSCSC
T ss_pred             CCCCCCCCCC-cccCccCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            5667889999 9999999999999999999999999887654

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.2e-11  Score=51.03  Aligned_cols=41  Identities=15%  Similarity=0.324  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytk_A            3 SGSSGSGEKP-YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSSSCS-EECSSSCCEESSHHHHHHHHHHHSSSSCSSC
T ss_pred             CcccCCCCCC-EeCCcCCCccCCHHHHHHHHHHHCCCCCCCC
Confidence            5567888999 9999999999999999999999999887654

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1e-11  Score=50.87  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=35.6

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            3 SGSSGSGEKP-YECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCCCS-EECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CCcccCCCcC-eECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            5567888999 999999999999999999999999887654

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.5e-11  Score=50.73  Aligned_cols=41  Identities=17%  Similarity=0.243  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eov_A            3 SGSSGTGEKP-YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP   43 (46)
T ss_dssp             CCCCCSSCCS-CBCSSSCCBCSSHHHHHHHHHHHSCCSSCCS
T ss_pred             CCCCCCCCCC-ccCCccChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            5667888899 9999999999999999999999999887554

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.2e-11  Score=51.03  Aligned_cols=42  Identities=17%  Similarity=0.309  Sum_probs=36.9

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++....
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKP-YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCC-CCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCC-eECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5567888899 99999999999999999999999998876553

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.3e-11  Score=50.96  Aligned_cols=41  Identities=15%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emm_A            3 SGSSGTGERP-HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCSCSSCCCS-EECSSSCCEESSHHHHHHHHHHHSCCCTTSS
T ss_pred             CcCCcCCCCC-eeCCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            5667889999 9999999999999999999999999887654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2e-11  Score=50.42  Aligned_cols=41  Identities=24%  Similarity=0.351  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em2_A            3 SGSSGSGEKP-FKCKECGKAFRQNIHLASHLRIHTGEKPSGP   43 (46)
T ss_dssp             CCCSCCCCCS-EECSSSCCEESSHHHHHHHHHHHCCCCSSCS
T ss_pred             CCCCCCCCCC-EECCcCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            5567888999 9999999999999999999999999887654

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.14  E-value=1.6e-11  Score=49.72  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=35.0

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         2 H~~~H~~~~~-~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~   41 (42)
T 2epc_A            2 SSGSSGGETP-YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS   41 (42)
T ss_dssp             CCSCCCSSCC-EECSSSCCEESSHHHHHHHHHHTTCCCCCC
T ss_pred             CCccCCCCCC-eECCCCCcccCCHHHHHHHhhhcCCCCCCC
Confidence            3456888899 999999999999999999999999887753

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=9.4e-12  Score=50.42  Aligned_cols=40  Identities=15%  Similarity=0.275  Sum_probs=35.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         2 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2en2_A            2 SSGSSGGEKP-YKCETCGARFVQVAHLRAHVLIHTGSGPSS   41 (42)
T ss_dssp             CCCCCCSSCS-EECTTTCCEESSHHHHHHHTHHHHSCCSSC
T ss_pred             CCcccCCCCC-EeCCCcChhhCCHHHHHHHHHHcCCCCCCC
Confidence            4456888899 999999999999999999999999987753

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=6.2e-11  Score=46.75  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=27.9

Q ss_pred             ccCCCCCCceecccccccccChHHHHHH-HHHhhCC
Q psy4268           6 FSAPSGEKRYLCDSCDRTYSNRSSLKRH-MNYECGK   40 (86)
Q Consensus         6 ~~~h~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~   40 (86)
                      +++|++++||.|..|++.|.....|..| ++.|.+.
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            3568888888888888888888888888 7777653

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.5e-11  Score=50.76  Aligned_cols=41  Identities=17%  Similarity=0.259  Sum_probs=36.4

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yti_A            3 SGSSGTGEKP-YKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSCCCT-TCCSSSCCCCSSHHHHHHHHTTTSCSCCSST
T ss_pred             CCcCCCCCcC-eECCCCCcccCChhHHHHHhHhcCCCCCCCC
Confidence            5567888899 9999999999999999999999999887654

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.8e-11  Score=50.52  Aligned_cols=41  Identities=12%  Similarity=0.211  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em6_A            3 SGSSGMGEKC-YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCSCCCCCCC-CBCSSSCCBCSSHHHHHHHHTTTSSSCCCCT
T ss_pred             CccccCCCCC-eECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            5567888999 9999999999999999999999999887655

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2e-11  Score=50.41  Aligned_cols=41  Identities=17%  Similarity=0.335  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eoq_A            3 SGSSGTGEKP-FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP   43 (46)
T ss_dssp             CCCCSSSSCS-CCCSSSCCCCSSHHHHHHHHHHTTCCCSSSC
T ss_pred             CCCCCCCCCC-cCCCcCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            5567888899 9999999999999999999999999887654

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.1e-11  Score=50.62  Aligned_cols=40  Identities=20%  Similarity=0.268  Sum_probs=35.6

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2en7_A            3 SGSSGTGMKP-YVCNECGKAFRSKSYLIIHTRTHTGESGPS   42 (44)
T ss_dssp             SCCCSSSSSS-SCCTTTCCCCSSHHHHHHHHTTTCCSSSSC
T ss_pred             CCcCCCCCcC-eECCCCCCccCCHHHHHHHhhhcCCCCCCC
Confidence            5667888899 999999999999999999999998887754

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.2e-11  Score=51.06  Aligned_cols=41  Identities=20%  Similarity=0.288  Sum_probs=36.4

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yth_A            3 SGSSGSGEKP-FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCSCCCCSSS-BCCSSSCCCBSSHHHHHHHGGGGTTCCCSSC
T ss_pred             cccCCCCCcC-CCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            5567888899 9999999999999999999999999887654

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=2e-11  Score=57.57  Aligned_cols=45  Identities=16%  Similarity=0.250  Sum_probs=40.8

Q ss_pred             ccccccC-CCCCCc--------eecccccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268           2 LGYYFSA-PSGEKR--------YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus         2 l~~h~~~-h~~~~~--------~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      |..|++. |.++++        |.|..|++.|.....|..|+++|+++++ |.|.
T Consensus        41 L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~-~~C~   94 (95)
T 2ej4_A           41 LVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS-GPSS   94 (95)
T ss_dssp             HHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC-CSSC
T ss_pred             HHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCC-CCCC
Confidence            5678876 988887        9999999999999999999999999999 9886

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.9e-11  Score=50.46  Aligned_cols=41  Identities=17%  Similarity=0.341  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep2_A            3 SGSSGTGEKP-YECSICGKSFTKKSQLHVHQQIHTGEKPSGP   43 (46)
T ss_dssp             SSSCSSCCCS-EECSSSCCEESSHHHHHHHHHTTSSCCSCCS
T ss_pred             CCCCCCCCcC-cCCCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5667889999 9999999999999999999999999887654

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1e-11  Score=51.27  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=36.4

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eml_A            3 SGSSGTGEKP-YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP   43 (46)
T ss_dssp             CCCCCSSCCS-EECSSSCCEESSHHHHHHHHGGGSSCCCSCS
T ss_pred             ccCCcCCCCC-eeCCCcCCccCCHHHHHHHHHHhcCCCCCCC
Confidence            5667889999 9999999999999999999999999887554

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.5e-11  Score=50.12  Aligned_cols=41  Identities=17%  Similarity=0.220  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytm_A            3 SGSSGTGEKP-YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP   43 (46)
T ss_dssp             SCCCCSSCCS-SSBTTTTBCCSSHHHHHHHHHHHHSCCCCCC
T ss_pred             CCcCCCCCCC-cCCCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            4567888899 9999999999999999999999999887654

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1e-11  Score=51.25  Aligned_cols=41  Identities=20%  Similarity=0.287  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yrj_A            3 SGSSGTGEKP-YRCGECGKAFAQKANLTQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCCC-EECSSSCCEESSHHHHHHHHTTTSSCCSSCS
T ss_pred             CccCCCCCCC-eECCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            5567888899 9999999999999999999999998887655

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.6e-11  Score=50.68  Aligned_cols=41  Identities=22%  Similarity=0.294  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytd_A            3 SGSSGSGEKP-YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP   43 (46)
T ss_dssp             CCCCSCCCCS-EECSSSCCEESSHHHHHHHHHHHTCCCSSCS
T ss_pred             CccccCCCcC-eECCCCCCeeCChHHHHHHHHHcCCCCCCCC
Confidence            5567888899 9999999999999999999999999887654

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.13  E-value=1e-11  Score=51.27  Aligned_cols=41  Identities=15%  Similarity=0.178  Sum_probs=36.4

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em0_A            3 SGSSGMGEKT-WKCRECDMCFSQASSLRLHQNVHVGEKPSGP   43 (46)
T ss_dssp             CCCCSCCCCC-CCCSSSCCCCSSHHHHHHHGGGGSSSSCSCS
T ss_pred             CcCccCCCcC-eECCCCCcccCCHHHHHHHHHHcCCCCCcCC
Confidence            5667889999 9999999999999999999999999887654

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.2e-11  Score=51.03  Aligned_cols=41  Identities=15%  Similarity=0.169  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eop_A            3 SGSSGTGEKP-HECRECGKSFSFNSQLIVHQRIHTGENPSGP   43 (46)
T ss_dssp             CCCSCCCCCS-CBCTTTCCBCSSHHHHHHHHTTTTTSCCSCC
T ss_pred             CccccCCCCC-eeCCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            5667888999 9999999999999999999999998887554

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=3.2e-11  Score=49.34  Aligned_cols=41  Identities=12%  Similarity=0.077  Sum_probs=35.7

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |++.|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 h~~~h~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGAAKTT-SECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             CSCSCSSSCC-CCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCCcC-eECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            4456788889 9999999999999999999999999887543

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.7e-11  Score=50.60  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2epz_A            3 SGSSGTGEKP-FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSCCCCCS-BCCTTTCCCBSSHHHHHHHHTTTTTCCCCSS
T ss_pred             CCCCcCCCCC-eECCCCCceeCCHHHHHHHHHHhCCCCCCCC
Confidence            5567888999 9999999999999999999999998887654

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.3e-11  Score=50.99  Aligned_cols=41  Identities=24%  Similarity=0.276  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emf_A            3 SGSSGTGGKH-FECTECGKAFTRKSTLSMHQKIHTGEKPSGP   43 (46)
T ss_dssp             CCSSSSSSCC-EECSSSCCEESCHHHHHHHGGGTSCSSCSCC
T ss_pred             cccccCCCCC-eECCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            5667888999 9999999999999999999999999887654

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.5e-11  Score=50.81  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=36.4

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytn_A            3 SGSSGTGKKP-YKCNECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSCCSS-CBCTTTCCBCSSHHHHHHHGGGTSCCCCCSC
T ss_pred             CCcCCCCCcC-eECCCCCCeeCCHHHHHHHhhhcCCCCCCCC
Confidence            5567888999 9999999999999999999999999887654

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1e-11  Score=50.78  Aligned_cols=40  Identities=23%  Similarity=0.329  Sum_probs=35.6

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eoj_A            3 SGSSGTGENP-YECCECGKVFSRKDQLVSHQKTHSGQSGPS   42 (44)
T ss_dssp             SCCSSSSCCS-CEETTTTEECSSHHHHHHHHTTSSSSCSCC
T ss_pred             CccccCCCcC-eeCCCCCCccCCHHHHHHHHHHcCCCCCCC
Confidence            5667889999 999999999999999999999998887654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=1.1e-10  Score=46.48  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=23.0

Q ss_pred             CCCCCCceeccc--ccccccChHHHHHHHHHhhCC
Q psy4268           8 APSGEKRYLCDS--CDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         8 ~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      .+++++||.|..  |++.|.....|..|+++|++.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            456677777765  777777777777777777653

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.3e-11  Score=51.00  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eon_A            3 SGSSGTGEKP-YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP   43 (46)
T ss_dssp             CSSSCSSCCS-CBCSSSCCBCSSHHHHHHHTTTTTSCCSCTT
T ss_pred             CCCCCCCCcc-cCCCCCCcccCcHHHHHHHHHhcCCCCCCCC
Confidence            4567888899 9999999999999999999999998887654

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.1e-11  Score=50.27  Aligned_cols=41  Identities=22%  Similarity=0.227  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2epw_A            3 SGSSGTGEKP-CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP   43 (46)
T ss_dssp             CCCCCCCCCS-EECSSSCCEESSSHHHHHHHHHCCSCCCSCC
T ss_pred             CcccCCCCCC-eeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            5567888899 9999999999999999999999998887654

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.5e-11  Score=50.78  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ytr_A            3 SGSSGTGEKP-YKCNECGKAFSQTSKLARHQRIHTGEKPSGP   43 (46)
T ss_dssp             SSCCCSSCCT-TCCTTTCCCCSSHHHHHHHHTTTTTCSCCCS
T ss_pred             CCcCCCCCcC-cCCCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            5667889999 9999999999999999999999998877544

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.1e-11  Score=50.33  Aligned_cols=41  Identities=15%  Similarity=0.196  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |++.|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 h~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2elz_A            3 SGSSGSVEKP-YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP   43 (46)
T ss_dssp             CCSCCCCCSS-CBCSSSCCBCSSHHHHHHHGGGGGSCCCCCS
T ss_pred             CCCCCCCCCC-eeCcccCchhCCHHHHHHHHHhcCCCCCCCC
Confidence            4567888999 9999999999999999999999999887654

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.2e-11  Score=50.14  Aligned_cols=39  Identities=21%  Similarity=0.421  Sum_probs=34.4

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++.
T Consensus         2 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   40 (42)
T 2eos_A            2 SSGSSGGEKP-YPCEICGTRFRHLQTLKSHLRIHTGSGPS   40 (42)
T ss_dssp             CCSCCSSSCC-BCCSSSCCCBSSHHHHHHHTTTTSCCSST
T ss_pred             CCcccCCCCC-EECCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            4456888899 99999999999999999999999888764

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.7e-11  Score=50.62  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=36.5

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2yu8_A            3 SGSSGTGEKP-YKCNECGKVFTQNSHLARHRRVHTGGKPSGP   43 (46)
T ss_dssp             CCCCCCCCSS-EECSSSCCEESSSHHHHHHTHHHHSCCCSCS
T ss_pred             cCcCCCCCCC-eECCcCCchhCCHHHHHHHHHhcCCCCCCCC
Confidence            5567889999 9999999999999999999999999887654

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.3e-10  Score=45.69  Aligned_cols=34  Identities=29%  Similarity=0.452  Sum_probs=24.2

Q ss_pred             cCCCCCCceecccccccccCh-HHHHHHHHHhhCC
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNR-SSLKRHMNYECGK   40 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~-~~l~~h~~~~~~~   40 (86)
                      ++|+++++|.|..|++.|... ..|..|+++|.++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            356777777777777777777 7777777776654

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.8e-11  Score=50.52  Aligned_cols=41  Identities=20%  Similarity=0.322  Sum_probs=35.9

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 h~~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2enh_A            3 SGSSGTGEKP-YECDVCRKAFSHHASLTQHQRVHSGEKPSGP   43 (46)
T ss_dssp             CCCCCCCSSS-CBCTTTCCBCSSSHHHHHHGGGSCCSCCCCC
T ss_pred             CCCCcCCCCC-cCCCCcCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            3456888899 9999999999999999999999999887654

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.2e-11  Score=49.75  Aligned_cols=41  Identities=12%  Similarity=0.061  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yso_A            3 SGSSGSREKS-HQCRECGEIFFQYVSLIEHQVLHMGQKNSGP   43 (46)
T ss_dssp             CSCCSSCCCC-EECTTTCCEESSHHHHHHHHHHHSCCSCCCT
T ss_pred             cccccCCCCC-EEccccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            4567888899 9999999999999999999999999887654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=3.8e-11  Score=53.73  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=38.3

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLP   42 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   42 (86)
                      |..|+++|.++++|.|..|++.|.....|..|++.|.++++
T Consensus        25 L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A           25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             HHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            56789999999999999999999999999999999998876

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.7e-10  Score=45.01  Aligned_cols=33  Identities=24%  Similarity=0.503  Sum_probs=23.6

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      +|+++++|.|..|++.|.....|..|+++|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            466777777777777777777777777776654

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.7e-11  Score=50.59  Aligned_cols=41  Identities=17%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eoe_A            3 SGSSGTGEKP-YKCNECGKVFTQNSHLANHQRIHTGVKPSGP   43 (46)
T ss_dssp             CSSCCCCCCS-SEETTTTEECSSHHHHHHHHGGGSCCCSCSS
T ss_pred             CCCCCCCCCC-eECCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            5667888999 9999999999999999999999999887654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=2.8e-11  Score=47.64  Aligned_cols=36  Identities=14%  Similarity=0.301  Sum_probs=32.1

Q ss_pred             HHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268          35 NYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus        35 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      ++|.+.++ |.|..|++.|.....|..|++.|+++++
T Consensus         2 ~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRS-YSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCC-CEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCC-cCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            35778889 9999999999999999999999998764

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.6e-12  Score=51.09  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=35.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         2 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2ytb_A            2 SSGSSGGEKP-YRCDQCGKAFSQKGSLIVHIRVHTGSGPSS   41 (42)
T ss_dssp             CCCCCCSCCS-BCCTTTTCCBSSHHHHHTTGGGTSCCSCCC
T ss_pred             CccccCCCCC-eeCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            4567888899 999999999999999999999998887653

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.4e-11  Score=50.19  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytq_A            3 SGSSGAGEKP-YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP   43 (46)
T ss_dssp             CSSCSSCCCS-CBCSSSCCBCSCHHHHHHHHTTTCCSCSSCC
T ss_pred             CCcCcCCCCC-cCCCccChhhCChHHHHHHHHHhCCCCCCCC
Confidence            5567889999 9999999999999999999999998887554

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1.9e-11  Score=50.43  Aligned_cols=41  Identities=20%  Similarity=0.333  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq0_A            3 SGSSGTGEKP-YKCHECGKVFRRNSHLARHQLIHTGEKPSGP   43 (46)
T ss_dssp             CCCCTTCCCC-EECTTTCCEESSHHHHHHHHTTTCCCCCSCC
T ss_pred             CCcCCCCCCC-eECCCCCchhCCHHHHHHHHHHcCCCCCCCC
Confidence            5567889999 9999999999999999999999998887654

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2e-11  Score=50.34  Aligned_cols=41  Identities=17%  Similarity=0.242  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2eme_A            3 SGSSGSGEKP-YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCTTCCCCS-EECSSSCCEESSHHHHHHHHGGGCCCSCCSS
T ss_pred             CCCCCCCCCC-eECCCCChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            5667889999 9999999999999999999999998887544

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.10  E-value=1e-11  Score=51.23  Aligned_cols=41  Identities=17%  Similarity=0.232  Sum_probs=36.4

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2el4_A            3 SGSSGTGVKP-YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP   43 (46)
T ss_dssp             CCCCSCCCCS-EECSSSSCEESSHHHHHHHGGGSSSCCCSCC
T ss_pred             cccCCCCCCc-eECCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            5667889999 9999999999999999999999998887654

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.5e-11  Score=50.72  Aligned_cols=41  Identities=17%  Similarity=0.249  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C   43 (46)
T 2yts_A            3 SGSSGTGEKP-YICNECGKSFIQKSHLNRHRRIHTGEKPSGP   43 (46)
T ss_dssp             CSCCCCSCCS-EECSSSCCEESSHHHHHHHGGGTSSCCSSCC
T ss_pred             CCCCCCCCcC-EECCCCChhhCChHHHHHHHHhcCCCCCcCC
Confidence            5567888899 9999999999999999999999998887654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.4e-10  Score=45.26  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=23.8

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      .|+++++|.|..|++.|.....|..|+++|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            466777777777777777777777777766553

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.8e-11  Score=50.50  Aligned_cols=41  Identities=15%  Similarity=0.267  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ene_A            3 SGSSGTGEKP-YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSCCCSSS-EECSSSCCEESSHHHHHHHHTTTCCCCCCSC
T ss_pred             cccCCCCCCC-eECCCCCchhCChHHHHHHHhhcCCCCCCCC
Confidence            5667888999 9999999999999999999999998887554

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.9e-11  Score=50.46  Aligned_cols=41  Identities=17%  Similarity=0.303  Sum_probs=36.4

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 h~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en6_A            3 SGSSGSGEKP-YGCNECGKTFSQKSILSAHQRTHTGEKPSGP   43 (46)
T ss_dssp             CSCCCCSSCC-EEETTTTEEESSHHHHHHHHHHHSSCCCSSS
T ss_pred             CCCccCCCcC-eECCCCCcccCchHHHHHHHHHcCCCCCCCC
Confidence            5567888999 9999999999999999999999999887654

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=3.1e-11  Score=49.81  Aligned_cols=41  Identities=17%  Similarity=0.224  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 h~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2enc_A            3 SGSSGSGEKP-FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP   43 (46)
T ss_dssp             CSSCCCCCCS-EECSSSCCEESSHHHHHHHHHHSCCSSCCSS
T ss_pred             CCCCCCCCCC-cCCCCCCCcCCChHHHHHHHHHhCCCCCCCC
Confidence            4567888999 9999999999999999999999998887654

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.4e-11  Score=50.42  Aligned_cols=40  Identities=10%  Similarity=0.172  Sum_probs=35.6

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2emb_A            3 SGSSGHTRKR-YECSKCQATFNLRKHLIQHQKTHAAKSGPS   42 (44)
T ss_dssp             CCSCCCCCSS-EECTTTCCEESCHHHHHHHGGGGCCCCCTT
T ss_pred             cccccCCCCC-eECCCCCCccCCHHHHHHHHHHcCCCCCcC
Confidence            5567888899 999999999999999999999999887754

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.7e-11  Score=49.59  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em8_A            3 SGSSGSGEKP-YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP   43 (46)
T ss_dssp             CCCCCCSCCS-EECSSSCCEESSHHHHHHHHHHHHCCCCCCS
T ss_pred             CCCCCCCCCC-eECcccCchhCCHHHHHHHHHHHcCCCCCCC
Confidence            4567888899 9999999999999999999999999887654

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.4e-11  Score=50.81  Aligned_cols=41  Identities=12%  Similarity=0.055  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2en8_A            3 SGSSGSGEKS-HTCDECGKNFCYISALRIHQRVHMGEKCSGP   43 (46)
T ss_dssp             CCCCCCCCSS-EECTTTCCEESSHHHHHHHHTTTCCSCSSCC
T ss_pred             ccccCCCCCC-eECCCcCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5567888999 9999999999999999999999998887554

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=2.1e-11  Score=50.30  Aligned_cols=41  Identities=15%  Similarity=0.224  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2em7_A            3 SGSSGTGEKP-YKCEECGKGFICRRDLYTHHMVHTGEKPSGP   43 (46)
T ss_dssp             CCCSSSCCCS-EECSSSCCEESCHHHHHHHGGGGTTCCCSST
T ss_pred             CCCCCCCCcC-ccCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            4567888899 9999999999999999999999998887654

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.6e-11  Score=50.72  Aligned_cols=41  Identities=12%  Similarity=0.096  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em5_A            3 SGSSGSSTKS-HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCSCS-EECSSSCCEESSHHHHHHHHTTTSCSCCSSC
T ss_pred             CcCCCCCCCC-eECCcCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            5667888899 9999999999999999999999998887654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.09  E-value=9.1e-11  Score=45.48  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=30.5

Q ss_pred             hhCCCCCccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268          37 ECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus        37 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      |.+.++ |.|..|++.|.....|..|++.|+++++
T Consensus         2 h~~~k~-~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSG-YVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCS-EECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCC-eECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            567788 9999999999999999999999988763

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.08  E-value=2.5e-11  Score=50.04  Aligned_cols=41  Identities=15%  Similarity=0.246  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2em9_A            3 SGSSGTGEKP-YNCKECGKSFRWASCLLKHQRVHSGEKPSGP   43 (46)
T ss_dssp             SCCSCCCCCS-EECSSSCCEESSHHHHHHHGGGGTSCCCCST
T ss_pred             CCCCCCCCcC-eECCccccccCChHHHHHHHHHhCCCCCCCC
Confidence            5667888999 9999999999999999999999998887554

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.6e-11  Score=50.02  Aligned_cols=42  Identities=19%  Similarity=0.279  Sum_probs=36.8

Q ss_pred             HHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          32 RHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        32 ~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      .|+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         2 ~H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en1_A            2 SSGSSGSGEKP-FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CSTTCCCCCCS-EEETTTTEEESSHHHHHHHGGGGSCCCCSCC
T ss_pred             CcccCCCCCCC-eeCCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            35677889999 9999999999999999999999998877654

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.08  E-value=3.7e-11  Score=49.60  Aligned_cols=41  Identities=17%  Similarity=0.237  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 h~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2el6_A            3 SGSSGAGVNP-YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP   43 (46)
T ss_dssp             SCCSSCCCCS-EECSSSSCEESSHHHHHHHHGGGCCSSCCSC
T ss_pred             CCCCCCCCCC-eECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            4567888999 9999999999999999999999999887654

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2.5e-11  Score=50.06  Aligned_cols=41  Identities=20%  Similarity=0.307  Sum_probs=36.3

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq3_A            3 SGSSGTGEKP-YECNQCGKAFSVRSSLTTHQAIHTGKKPSGP   43 (46)
T ss_dssp             CCCSSCCCCS-SEETTTTEECSSHHHHHHHHTTSCCCCCCCS
T ss_pred             cccCCCCCCC-eECCCCChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            5567888899 9999999999999999999999998887654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.5e-10  Score=45.19  Aligned_cols=33  Identities=30%  Similarity=0.492  Sum_probs=23.8

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      .|+++++|.|..|++.|.....|..|+++|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            466777777777777777777777777766553

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.07  E-value=2.3e-10  Score=45.16  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=23.4

Q ss_pred             CCCCCceecc--cccccccChHHHHHHHHHhhCCCC
Q psy4268           9 PSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLP   42 (86)
Q Consensus         9 h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~   42 (86)
                      |+++++|.|.  .|++.|.....|..|++.|.+.++
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            4566777777  477777777777777777766655

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.07  E-value=3.6e-11  Score=47.30  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=31.8

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |++.|.+.++ |.|..|++.|.....|..|++.|+++
T Consensus         2 H~~~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSS-BCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCC-ccCCCCCcccCcHHHHHHHHHHhccC
Confidence            4567889999 99999999999999999999888764

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=2.5e-11  Score=50.13  Aligned_cols=41  Identities=15%  Similarity=0.107  Sum_probs=35.6

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhcc-CCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV-GEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~-~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|++ +++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C   44 (46)
T 2eoy_A            3 SGSSGQKEKC-FKCNKCEKTFSCSKYLTQHERIHTRGVKSGPS   44 (46)
T ss_dssp             CCCCCCCSCC-EECSSSCCEESSSHHHHHHHTTCCSCCTTSSS
T ss_pred             CccccCCCCC-EECcCCCCcCCCHHHHHHHHHHcCCCCCCCCC
Confidence            4567888899 9999999999999999999999988 776543

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=2e-11  Score=49.95  Aligned_cols=40  Identities=15%  Similarity=0.147  Sum_probs=35.7

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         3 H~~~H~~~~~-~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2eox_A            3 SGSSGTDSKS-YNCNECGKAFTRIFHLTRHQKIHTRKSGPS   42 (44)
T ss_dssp             CCCCCCCCCC-EEETTTTEEESSSHHHHTTHHHHCCCCCCS
T ss_pred             CCcCCCCCCC-eECcccCcccCCHHHHHHHHHHhCCCCCCC
Confidence            5567888899 999999999999999999999999988754

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.3e-10  Score=47.89  Aligned_cols=40  Identities=10%  Similarity=0.108  Sum_probs=35.4

Q ss_pred             HHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          35 NYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        35 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      +.|.+.++ |.|..|++.|.....|..|++.|+++++....
T Consensus         5 ~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERG-HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSS-CCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCC-cCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            46788889 99999999999999999999999998876653

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=3.2e-10  Score=44.17  Aligned_cols=33  Identities=27%  Similarity=0.561  Sum_probs=21.6

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      +|+++++|.|..|++.|.....|..|+++|.++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            456666666666666666666666666666553

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=5e-11  Score=49.29  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=35.9

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHH-HhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYY-RKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~~~~~~~~   74 (86)
                      |++.|.+.++ |.|..|++.|.....|..|++ .|.++++...
T Consensus         3 H~~~H~~~k~-~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C   44 (47)
T 2epx_A            3 SGSSGTGKKP-YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP   44 (47)
T ss_dssp             CCCCCCCCCS-BCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSC
T ss_pred             cccccCCCCC-EECCccCchhCChHHHHHHhHhhcCCCCCCCC
Confidence            5567888999 999999999999999999998 8888877544

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.05  E-value=4.1e-11  Score=51.47  Aligned_cols=40  Identities=18%  Similarity=0.434  Sum_probs=36.4

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      |..|+++|.++++|.|..|++.|.....|..|+++|.+++
T Consensus        17 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A           17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             HHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             HHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            5678889999999999999999999999999999887754

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.04  E-value=1.4e-10  Score=44.96  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             hhCCCCCccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268          37 ECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus        37 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      |.+.++ |.|..|++.|.....|..|++.|+++++
T Consensus         2 H~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRP-FVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSC-EECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcC-eeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            567888 9999999999999999999999888764

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=2.6e-11  Score=50.02  Aligned_cols=41  Identities=17%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2ysp_A            3 SGSSGTGEKP-YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP   43 (46)
T ss_dssp             CCCCCSSCCS-EEETTTTEEESCHHHHHHHHTTSCSCCSSCC
T ss_pred             CCcCCCCCCC-eECCCCCCccCCHHHHHHHHHhhCCCCCCCC
Confidence            5567888899 9999999999999999999999998887554

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=3.3e-10  Score=46.05  Aligned_cols=38  Identities=24%  Similarity=0.404  Sum_probs=34.0

Q ss_pred             HhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          36 YECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      .|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            4 GSSGNGA-FFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CCSSSCC-BCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CcCCCCC-EECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            5778888 9999999999999999999999999887654

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.5e-11  Score=50.80  Aligned_cols=41  Identities=17%  Similarity=0.292  Sum_probs=36.2

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |+++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         3 H~~~H~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytg_A            3 SGSSGTGEKP-FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCCSSCCS-EECTTTCCEESSSHHHHTTGGGGSSCCSSCS
T ss_pred             CCCCCCCCCC-eECCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            5567888899 9999999999999999999999999887654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.03  E-value=1.7e-10  Score=48.10  Aligned_cols=32  Identities=31%  Similarity=0.654  Sum_probs=16.7

Q ss_pred             CCCCCceecccccccccChHHHHHHHH-HhhCC
Q psy4268           9 PSGEKRYLCDSCDRTYSNRSSLKRHMN-YECGK   40 (86)
Q Consensus         9 h~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~   40 (86)
                      |+++++|.|.+|++.|.....|..|++ +|.++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            455555555555555555555555555 44443

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.03  E-value=3.8e-10  Score=43.33  Aligned_cols=28  Identities=21%  Similarity=0.394  Sum_probs=14.0

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      |.|..|++.|.....|..|++.|+++++
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~   30 (33)
T 1rim_A            3 FACPECPKRFMRSDHLSKHITLHELLGE   30 (33)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTTTCC
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            4455555555555555555554544443

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=4.8e-10  Score=43.70  Aligned_cols=33  Identities=21%  Similarity=0.568  Sum_probs=21.1

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      .|+++++|.|..|++.|.....|..|+++|.++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            355666666666666666666666666666543

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.03  E-value=3e-10  Score=45.14  Aligned_cols=36  Identities=11%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             hhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          37 ECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        37 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      |.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         1 h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            1 XWPPRS-YTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             -CCSSS-EECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCCc-eECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            456788 999999999999999999999999988754

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=1.2e-09  Score=48.81  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=35.8

Q ss_pred             CCCCCCceeccc--ccccccChHHHHHHH-HHhhCCCCCccCCC
Q psy4268           8 APSGEKRYLCDS--CDRTYSNRSSLKRHM-NYECGKLPAFPCTL   48 (86)
Q Consensus         8 ~h~~~~~~~c~~--c~~~~~~~~~l~~h~-~~~~~~~~~~~c~~   48 (86)
                      ..+|+|||.|..  |+++|....+|..|+ ++|++++| +.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP-~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP-AFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC-CCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC-ccccc
Confidence            367999999975  999999999999997 68999999 88865

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.02  E-value=8.9e-11  Score=54.70  Aligned_cols=39  Identities=18%  Similarity=0.356  Sum_probs=34.9

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHH-HhhCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMN-YECGK   40 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~   40 (86)
                      |..|+++|++++||.|..|++.|.....|..|++ .|.++
T Consensus        44 L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           44 QERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             HHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             HhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            6789999999999999999999999999999974 57654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.01  E-value=1.1e-10  Score=52.55  Aligned_cols=40  Identities=28%  Similarity=0.417  Sum_probs=36.9

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhhCCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      |..|++.|.++++|.|..|++.|.....|..|++.|.+..
T Consensus        30 L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           30 LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             HHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             HHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            5678899999999999999999999999999999998764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=99.01  E-value=1.5e-10  Score=48.03  Aligned_cols=37  Identities=16%  Similarity=0.436  Sum_probs=24.4

Q ss_pred             ccccCCCCCCceecc--cccccccChHHHHHHHHHhhCC
Q psy4268           4 YYFSAPSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      .+...|+++++|.|.  .|++.|.....|..|+++|.++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            344556777777774  5777777777777777766654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.6e-10  Score=46.48  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             HhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCC
Q psy4268          36 YECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGA   73 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~   73 (86)
                      +|.+.++ |.|..|++.|.....|..|++.|+++++..
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (41)
T 2ept_A            4 GSSGQRV-YECQECGKSFRQKGSLTLHERIHTGSGPSS   40 (41)
T ss_dssp             SCCCCCC-EECSSSCCEESSHHHHHHHGGGCCCCSCSC
T ss_pred             ccCCCCC-eECCCCCCCcCCHHHHHHHHHHhCCCCCcC
Confidence            5778889 999999999999999999999998887643

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2e-10  Score=47.33  Aligned_cols=39  Identities=15%  Similarity=0.343  Sum_probs=34.9

Q ss_pred             HHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          35 NYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        35 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         5 ~~h~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ytt_A            5 SSGEGEKP-YQCSECGKSFSGSYRLTQHWITHTREKPSGP   43 (46)
T ss_dssp             SSCSCCCT-TCCSSSCCCCSSHHHHHHHHTHHHHCCCCSC
T ss_pred             CCCCCCCC-eeCCCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            46788889 9999999999999999999999999887654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.98  E-value=1e-09  Score=43.12  Aligned_cols=33  Identities=27%  Similarity=0.761  Sum_probs=23.2

Q ss_pred             CCCCCCceeccc--ccccccChHHHHHHHHHhhCC
Q psy4268           8 APSGEKRYLCDS--CDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         8 ~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      .|+++++|.|.+  |++.|.....|..|+++|+++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            366777777774  777777777777777777654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=6e-10  Score=44.36  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             hhCCCCCccCCC--CccccCChhHHHHHHHHhccC
Q psy4268          37 ECGKLPAFPCTL--CSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        37 ~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      +.+++| |.|..  |++.|.....|..|++.|+++
T Consensus         4 ~~gekp-~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGIL-LKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCC-EECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCC-CCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            567889 99986  999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.97  E-value=1.4e-09  Score=41.70  Aligned_cols=32  Identities=13%  Similarity=0.313  Sum_probs=29.5

Q ss_pred             CceecccccccccChHHHHHHHHHhhCCCCCcc
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP   45 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~   45 (86)
                      +||.|..|++.|.....|..|+++|.++++ |.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~-~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGE-ER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCC-CC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCC-CC
Confidence            579999999999999999999999999988 64

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.7e-10  Score=46.69  Aligned_cols=39  Identities=26%  Similarity=0.446  Sum_probs=34.5

Q ss_pred             HHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          35 NYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        35 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         5 ~~h~~~k~-~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (45)
T 2epu_A            5 SSGTGQKP-FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS   43 (45)
T ss_dssp             CCCCSCCS-EEETTTTEEESSHHHHHHHHTTTSSCCCCCS
T ss_pred             CCCCCCcC-ccCCCCCCccCChHHHHHHHHHhCCCCCCCC
Confidence            45778889 9999999999999999999999998887654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.96  E-value=3.3e-10  Score=47.22  Aligned_cols=37  Identities=27%  Similarity=0.547  Sum_probs=28.9

Q ss_pred             HhhCCCCCccCCCCccccCChhHHHHHHH-HhccCCCCC
Q psy4268          36 YECGKLPAFPCTLCSYATKRKTSLASHYY-RKHVGEDGA   73 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~~~~~~~   73 (86)
                      +|++.++ |.|..|++.|.....|..|++ .|.++....
T Consensus         1 ~Ht~~kp-~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~~   38 (48)
T 3iuf_A            1 GEDRDKP-YACDICGKRYKNRPGLSYHYAHSHLAEEEGE   38 (48)
T ss_dssp             -CTTTSC-EECTTTCCEESSHHHHHHHHHHSSCC-----
T ss_pred             CCCCCcC-EECCCcCcccCCHHHHHHHhhhhcCCCCCCC
Confidence            3678889 999999999999999999998 888776653

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=6.3e-10  Score=43.29  Aligned_cols=34  Identities=26%  Similarity=0.501  Sum_probs=30.3

Q ss_pred             HhhCCCCCccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          36 YECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      +|.+.++ |.|..|++.|.....|..|++.|++++
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKP-YKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCS-EECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCC-CCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4677888 999999999999999999999988764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4.3e-10  Score=44.11  Aligned_cols=34  Identities=12%  Similarity=0.317  Sum_probs=30.3

Q ss_pred             HhhCCCCCccCCCCccccCCh-hHHHHHHHHhccCC
Q psy4268          36 YECGKLPAFPCTLCSYATKRK-TSLASHYYRKHVGE   70 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~-~~l~~h~~~~~~~~   70 (86)
                      +|.+.++ |.|..|++.|... ..|..|++.|++++
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRA-MKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCC-EECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCC-eECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            4678888 9999999999999 99999999998764

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.96  E-value=7.5e-10  Score=45.31  Aligned_cols=39  Identities=23%  Similarity=0.453  Sum_probs=34.4

Q ss_pred             HhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCC
Q psy4268          36 YECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALP   75 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~   75 (86)
                      .|.++++ |.|..|++.|.....|..|++.|+++++...+
T Consensus         4 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~   42 (45)
T 2epq_A            4 GSSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP   42 (45)
T ss_dssp             CCSSCCS-SEETTTTEECSCHHHHHHHHHHHSCCCCCCCC
T ss_pred             CcCCCCC-CcCCCCCcccCCHHHHHHHHHHccCCCCCCCc
Confidence            4778888 99999999999999999999999998876543

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.95  E-value=4.8e-10  Score=44.13  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=21.9

Q ss_pred             CCCCCceecccccccccChHHHHHHH
Q psy4268           9 PSGEKRYLCDSCDRTYSNRSSLKRHM   34 (86)
Q Consensus         9 h~~~~~~~c~~c~~~~~~~~~l~~h~   34 (86)
                      +.|++||.|..|+++|....+|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            56788888888888888888888887

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=8.9e-10  Score=42.84  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             HhhCCCCCccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          36 YECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      .|.+.++ |.|..|++.|.....|..|++.|++++
T Consensus         3 ~h~~~~~-~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKT-HLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSS-CBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCC-eecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            3567788 999999999999999999999998764

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.2e-10  Score=46.63  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=35.0

Q ss_pred             HHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          34 MNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        34 ~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ++.|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         4 ~~~h~~~~~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep0_A            4 GSSGTGEKP-YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCSSTTCCS-EECSSSCCEESSHHHHHHHHTTTSSSCCCSC
T ss_pred             CCCCCCCCC-eeCcccCcccCChHHHHHHHHHhCCCCCCCC
Confidence            346788889 9999999999999999999999998887554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.93  E-value=3e-09  Score=47.26  Aligned_cols=35  Identities=14%  Similarity=0.283  Sum_probs=26.7

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHhhCCC
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      ..+.+++||.|..|++.|.....|..|+++|++..
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            34667788888888888888888888888877754

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=7.9e-10  Score=43.06  Aligned_cols=34  Identities=35%  Similarity=0.713  Sum_probs=30.1

Q ss_pred             HhhCCCCCccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          36 YECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      .|.+.++ |.|..|++.|.....|..|++.|++++
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKP-FKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCS-EECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCC-ccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            4677888 999999999999999999999888753

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.91  E-value=1.4e-10  Score=49.71  Aligned_cols=37  Identities=27%  Similarity=0.584  Sum_probs=33.9

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHhh
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   38 (86)
                      |..|+++|.++++|.|..|++.|.....|..|++.|.
T Consensus        20 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C           20 LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             HHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            5678889999999999999999999999999998875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=1.6e-09  Score=42.14  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=29.4

Q ss_pred             hhCCCCCccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          37 ECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        37 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      +.+.++ |.|..|++.|.....|..|++.|++++
T Consensus         4 ~~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKI-FTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCC-EECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCC-EECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            567788 999999999999999999999998764

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=2.4e-09  Score=42.15  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=30.7

Q ss_pred             hhCCCCCccCC--CCccccCChhHHHHHHHHhccCCCC
Q psy4268          37 ECGKLPAFPCT--LCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus        37 ~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      |.+.++ |.|.  .|++.|.....|..|++.|+++++.
T Consensus         1 H~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKP-FLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCC-EECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcc-eECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            457788 9999  5999999999999999999988764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=9.6e-10  Score=42.81  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             HhhCCCCCccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          36 YECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      .|.+.++ |.|..|++.|.....|..|++.|++++
T Consensus         3 ~h~~~k~-~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLL-YDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCC-EECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCC-eECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            3667788 999999999999999999998887653

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.88  E-value=4.9e-09  Score=49.74  Aligned_cols=58  Identities=16%  Similarity=0.055  Sum_probs=47.3

Q ss_pred             ccccChHHHHHHHHHhhCCCCCccCCCCcccc-CChhHHHHHHHHhccCCCCCCCCCCCCCC
Q psy4268          22 RTYSNRSSLKRHMNYECGKLPAFPCTLCSYAT-KRKTSLASHYYRKHVGEDGALPPPHEPDY   82 (86)
Q Consensus        22 ~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f-~~~~~l~~h~~~~~~~~~~~~~~~~~~~~   82 (86)
                      ..|.....+..|++.+.+.++ |.|..|++.| .....|..|++.| ++++..+ .-++..|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~-~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C-~~Cgk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGS-VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTC-HHCGKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSC-EECTTTCSCEESSHHHHHHHHHHH-CCCCCCC-SSSCCCC
T ss_pred             CCCCCchHHHHHHHHhcCCCC-cCCCCCCCCcccCHHHHHHHHHHH-CCCCeEC-CCCCCee
Confidence            466777888899999999999 9999999999 9999999999999 7776544 3344444

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.87  E-value=5.4e-10  Score=48.40  Aligned_cols=39  Identities=31%  Similarity=0.646  Sum_probs=34.6

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHH-HHhhCC
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHM-NYECGK   40 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~-~~~~~~   40 (86)
                      |..|++.|.++++|.|..|++.|.....|..|+ +.|.+.
T Consensus        18 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A           18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             HHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             HHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            567889999999999999999999999999997 567654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=9.6e-09  Score=45.61  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=31.0

Q ss_pred             hhCCCCCccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268          37 ECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus        37 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      +..+++ |.|..|++.|.....|..|++.|+++...
T Consensus         8 ~~~ekp-y~C~~CgK~F~~~s~L~~H~r~Htg~~~~   42 (66)
T 2epp_A            8 LREAGI-LPCGLCGKVFTDANRLRQHEAQHGVTSLQ   42 (66)
T ss_dssp             CCCCCC-CCCTTTCCCCSCHHHHHHHHHHHTTTSCC
T ss_pred             CCCccC-cCCCCCCCccCCHHHHHhhhhhhCCCccc
Confidence            456788 99999999999999999999999987643

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=4.5e-10  Score=44.16  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=29.5

Q ss_pred             HHhhCCCCCccCCCCccccCChhHHHHH-HHHhccC
Q psy4268          35 NYECGKLPAFPCTLCSYATKRKTSLASH-YYRKHVG   69 (86)
Q Consensus        35 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h-~~~~~~~   69 (86)
                      +.|.++++ |.|..|++.|.....|..| ++.|+++
T Consensus         2 ~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHL-YYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCE-EECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcC-eECCCCCcccCCHHHHHHHHHHHccCc
Confidence            35778889 9999999999999999999 8777654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=8.6e-10  Score=52.40  Aligned_cols=51  Identities=10%  Similarity=0.039  Sum_probs=42.2

Q ss_pred             cccChHHHHHHHHHhhCCCCCccCCCCccccC-ChhHHHHHHHHhcc-CCCCCC
Q psy4268          23 TYSNRSSLKRHMNYECGKLPAFPCTLCSYATK-RKTSLASHYYRKHV-GEDGAL   74 (86)
Q Consensus        23 ~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~-~~~~l~~h~~~~~~-~~~~~~   74 (86)
                      .+.....+..|++.|.+.++ |.|..|++.|. ....|..|++.|++ +++..+
T Consensus         5 s~~~~~~~~~h~~~h~~~~~-~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C   57 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGE-AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKC   57 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSC-CCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCcHHHHHHHhccCCC-cCCCCCCCChhhhHHHHHHHHHHHcCCCCCEEC
Confidence            34444556789999999999 99999999999 99999999999998 665443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.80  E-value=5.9e-09  Score=40.84  Aligned_cols=33  Identities=15%  Similarity=0.165  Sum_probs=29.1

Q ss_pred             hhCCCCCccCC--CCccccCChhHHHHHHHHhccCC
Q psy4268          37 ECGKLPAFPCT--LCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        37 ~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      +.+.++ |.|.  .|++.|.....|..|++.|++++
T Consensus         3 ~~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQ-HICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCC-EECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCC-CCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            567788 9998  49999999999999999998864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.4e-09  Score=45.02  Aligned_cols=40  Identities=23%  Similarity=0.357  Sum_probs=34.7

Q ss_pred             HHHhhCCCCCccCC--CCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          34 MNYECGKLPAFPCT--LCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        34 ~~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      .++|.+.++ |.|.  .|++.|.....|..|++.|+++++...
T Consensus         4 ~~~H~~~k~-~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C   45 (48)
T 2ent_A            4 GSSGTGEKP-FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP   45 (48)
T ss_dssp             CCSSCCCCC-EECCSSSCCCEESSHHHHHHHHTTSCCCCSCSS
T ss_pred             CCCcCCCCC-eECCCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            346788889 9998  899999999999999999998887654

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.78  E-value=4.2e-10  Score=50.57  Aligned_cols=36  Identities=25%  Similarity=0.514  Sum_probs=32.9

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHh
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      |..|++.|.++++|.|..|++.|.....|..|+++|
T Consensus        37 l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             HHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             HHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            567888999999999999999999999999998876

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.78  E-value=1.1e-08  Score=37.59  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=15.7

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |.|..|++.|.....|..|++.|+++
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            3 FVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             eECCCCCcccCCHHHHHHHHHHhcCC
Confidence            56666666666666666666555543

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.77  E-value=8e-09  Score=38.17  Aligned_cols=25  Identities=20%  Similarity=0.406  Sum_probs=12.5

Q ss_pred             ccCCCCccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|..|++.|.....|..|++.|++
T Consensus         4 ~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            4 YQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             EECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             ccCCCCCcccCCHHHHHHHHHHhcc
Confidence            4455555555555555555544443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.76  E-value=1e-08  Score=37.56  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=16.7

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |.|..|++.|.....|..|++.|+++
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CcCCCCCcccCCHHHHHHHHHHhccC
Confidence            56666666666666666666666554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.75  E-value=1.5e-08  Score=37.42  Aligned_cols=27  Identities=26%  Similarity=0.675  Sum_probs=17.6

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |.|..|++.|.....|..|++.|++++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             ccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            666666666666666666666666543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.75  E-value=7.2e-09  Score=38.12  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=14.5

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |.|..|++.|.....|..|++.|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            3 FACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             EECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             ccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            55555555555555555555555443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.75  E-value=9e-09  Score=38.03  Aligned_cols=29  Identities=34%  Similarity=0.650  Sum_probs=26.4

Q ss_pred             CCceecccccccccChHHHHHHHHHhhCC
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      +++|.|..|++.|.....|..|++.|.+.
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            47899999999999999999999988765

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.75  E-value=1.1e-08  Score=37.56  Aligned_cols=26  Identities=15%  Similarity=0.240  Sum_probs=14.3

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |.|..|++.|.....|..|++.|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            3 LKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             EECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             ccCCCCCCccCChhHHHHHHHHhcCC
Confidence            55555555555555555555555443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.74  E-value=2.9e-09  Score=52.66  Aligned_cols=66  Identities=20%  Similarity=0.264  Sum_probs=48.2

Q ss_pred             CCceeccccccccc------ChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCCCCCCCCCC
Q psy4268          12 EKRYLCDSCDRTYS------NRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALPPPHEPDY   82 (86)
Q Consensus        12 ~~~~~c~~c~~~~~------~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~~~~~~~~~   82 (86)
                      ++.+.|.+|.+.|.      ....|..|+ .|.+.++ |.|..|++.|.....|..|++.|  +++... ..++..|
T Consensus        39 ~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~-~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C-~~C~k~f  110 (129)
T 2wbt_A           39 QKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQ-FVCPLCLMPFSSSVSLKQHIRYT--EHTKVC-PVCKKEF  110 (129)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCS-EECTTTCCEESSHHHHHHHHHHT--CCCCBC-TTTCCBC
T ss_pred             hCcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCC-eECCCCCcccCCHhHHHHHHHHC--CCCCCC-CCCCccc
Confidence            45566777665444      556677776 5888889 99999999999999999999887  555433 3344444

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.74  E-value=3.6e-09  Score=46.57  Aligned_cols=38  Identities=13%  Similarity=0.336  Sum_probs=33.3

Q ss_pred             ccccccC-C-CCCCceecccccccccChHHHHHHHHHhhC
Q psy4268           2 LGYYFSA-P-SGEKRYLCDSCDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus         2 l~~h~~~-h-~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   39 (86)
                      |..|+.. | .++++|.|..|++.|.....|..|++.+.+
T Consensus        26 l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             HHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            4567776 7 689999999999999999999999998764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.73  E-value=1.7e-08  Score=37.03  Aligned_cols=28  Identities=25%  Similarity=0.774  Sum_probs=25.7

Q ss_pred             CceecccccccccChHHHHHHHHHhhCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      ++|.|..|++.|.....|..|++.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            4799999999999999999999998775

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.73  E-value=1.7e-08  Score=37.00  Aligned_cols=28  Identities=25%  Similarity=0.695  Sum_probs=25.9

Q ss_pred             CceecccccccccChHHHHHHHHHhhCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      ++|.|..|++.|.....|..|+++|.++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            4799999999999999999999999875

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.73  E-value=1.1e-08  Score=37.56  Aligned_cols=28  Identities=18%  Similarity=0.492  Sum_probs=25.8

Q ss_pred             CceecccccccccChHHHHHHHHHhhCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      ++|.|..|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            5799999999999999999999998875

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=7.2e-09  Score=42.90  Aligned_cols=37  Identities=11%  Similarity=0.140  Sum_probs=32.6

Q ss_pred             hhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          37 ECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        37 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      +.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus         7 ~~~~k~-~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (48)
T 2epr_A            7 GRTRKQ-VACEICGKIFRDVYHLNRHKLSHSGEKPYSS   43 (48)
T ss_dssp             CCCCCS-EEETTTTEEESSHHHHHHHGGGSCSCCCCCS
T ss_pred             CCCCcC-eeCCCCCcccCCHHHHHHHHHhcCCCCCccC
Confidence            556778 9999999999999999999999999887654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.70  E-value=1.1e-08  Score=37.41  Aligned_cols=25  Identities=20%  Similarity=0.651  Sum_probs=13.1

Q ss_pred             CceecccccccccChHHHHHHHHHh
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      ++|.|..|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhc
Confidence            3455555555555555555555443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.69  E-value=1.5e-08  Score=36.71  Aligned_cols=24  Identities=21%  Similarity=0.560  Sum_probs=11.6

Q ss_pred             CceecccccccccChHHHHHHHHH
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNY   36 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~   36 (86)
                      ++|.|..|++.|.....|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHHH
Confidence            344455555555555555444443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.69  E-value=2.2e-08  Score=37.73  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=13.6

Q ss_pred             ccCC--CCccccCChhHHHHHHHHhcc
Q psy4268          44 FPCT--LCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~--~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|.  .|++.|.....|..|++.|++
T Consensus         4 ~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            4 YSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             BCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            5555  455555555555555555544

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.68  E-value=2.1e-08  Score=36.67  Aligned_cols=28  Identities=25%  Similarity=0.604  Sum_probs=25.8

Q ss_pred             CceecccccccccChHHHHHHHHHhhCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      ++|.|..|++.|.....|..|++.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            5799999999999999999999998875

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.68  E-value=2.7e-08  Score=36.66  Aligned_cols=29  Identities=31%  Similarity=0.574  Sum_probs=26.2

Q ss_pred             CceecccccccccChHHHHHHHHHhhCCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      ++|.|..|++.|.....|..|++.|.+..
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            47899999999999999999999988764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.67  E-value=1.7e-08  Score=37.77  Aligned_cols=26  Identities=27%  Similarity=0.416  Sum_probs=15.7

Q ss_pred             ccCC--CCccccCChhHHHHHHHHhccC
Q psy4268          44 FPCT--LCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        44 ~~c~--~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |.|.  .|++.|.....|..|++.|+++
T Consensus         3 ~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            3 FMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            5565  5666666666666666555544

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.67  E-value=2.6e-08  Score=37.49  Aligned_cols=29  Identities=31%  Similarity=0.710  Sum_probs=26.5

Q ss_pred             CCceecc--cccccccChHHHHHHHHHhhCC
Q psy4268          12 EKRYLCD--SCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        12 ~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      +++|.|.  .|++.|.....|..|+++|.++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            4789999  8999999999999999999875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.66  E-value=2.8e-09  Score=44.09  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             HHHhhCCCCCccCC--CCccccCChhHHHHHHHHhccCC
Q psy4268          34 MNYECGKLPAFPCT--LCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        34 ~~~~~~~~~~~~c~--~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      ...|.++++ |.|.  .|++.|.....|..|++.|++++
T Consensus        10 ~~~H~~~k~-~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           10 YVKEMPDKT-FECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SCEEETTTE-EECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HhccCCCCC-eECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            345888999 9995  79999999999999999998864

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=2.8e-09  Score=47.05  Aligned_cols=40  Identities=15%  Similarity=0.220  Sum_probs=34.7

Q ss_pred             ccccccCCCCCCceecc-cccccccChHHHHHHHHHhhCCCC
Q psy4268           2 LGYYFSAPSGEKRYLCD-SCDRTYSNRSSLKRHMNYECGKLP   42 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~-~c~~~~~~~~~l~~h~~~~~~~~~   42 (86)
                      |..|+++ +++++|.|. .|++.|.....|..|+++|....+
T Consensus        25 L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           25 IQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             HHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             HHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            4568777 899999999 999999999999999998876543

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.65  E-value=1.2e-08  Score=37.08  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=12.7

Q ss_pred             CceecccccccccChHHHHHHHHH
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNY   36 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~   36 (86)
                      +||.|..|++.|.....|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            445555555555555555555443

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.65  E-value=4.2e-10  Score=42.89  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=13.8

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |.|..|++.|.....|..|++.|++++
T Consensus         3 ~~C~~C~k~f~~~~~L~~H~~~H~~~k   29 (32)
T 2kfq_A            3 FACPACPKRFMRSDALSKHIKTAFIVV   29 (32)
T ss_dssp             SSSSSSCTTHHHHHTTSSSTTSSSSSS
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHccCC
Confidence            455555555555555555554444443

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.64  E-value=1.3e-09  Score=49.49  Aligned_cols=38  Identities=18%  Similarity=0.429  Sum_probs=32.3

Q ss_pred             HHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268          31 KRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        31 ~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      ..|+++|.+.++ |.|..|++.|.....|..|++.++.+
T Consensus         4 ~~H~~~H~~~k~-~~C~~C~k~f~~~~~L~~H~~~~h~~   41 (77)
T 2ct1_A            4 GSSGRTHSGEKP-YECYICHARFTQSGTMKMHILQKHTE   41 (77)
T ss_dssp             CCCCCCCSCCCS-EECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccccccCCCCC-eECCCcCchhCCHHHHHHHHHHhcCC
Confidence            357778999999 99999999999999999999754443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.62  E-value=1.8e-08  Score=36.36  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=15.2

Q ss_pred             ccCCCCccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|..|++.|.....|..|++.|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            5566666666666666666655543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.62  E-value=3.3e-08  Score=36.94  Aligned_cols=28  Identities=21%  Similarity=0.735  Sum_probs=25.4

Q ss_pred             Cceecc--cccccccChHHHHHHHHHhhCC
Q psy4268          13 KRYLCD--SCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        13 ~~~~c~--~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      +||.|.  .|++.|.....|..|+++|.++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            578998  8999999999999999998875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.05  E-value=4.2e-09  Score=38.86  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=15.0

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |.|..|++.|.....|..|++.|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            55666666666666666665555543

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.61  E-value=3.7e-08  Score=35.61  Aligned_cols=26  Identities=23%  Similarity=0.634  Sum_probs=23.1

Q ss_pred             CCCccCCCCccccCChhHHHHHHHHhc
Q psy4268          41 LPAFPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        41 ~~~~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      ++ |.|..|++.|.....|..|++.|+
T Consensus         2 k~-~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            2 KP-FSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CC-EECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cC-ccCCCcChhhCCHHHHHHHHHHcc
Confidence            46 999999999999999999987763

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.59  E-value=3.6e-09  Score=47.34  Aligned_cols=36  Identities=28%  Similarity=0.546  Sum_probs=31.7

Q ss_pred             ccccccCCCCCCceeccc--ccccccChHHHHHHHHHh
Q psy4268           2 LGYYFSAPSGEKRYLCDS--CDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~   37 (86)
                      |..|++.|.++++|.|.+  |++.|.....|..|+++|
T Consensus        35 L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             HHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             HHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            567889999999999975  999999999999998653

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.58  E-value=5.7e-08  Score=41.12  Aligned_cols=44  Identities=14%  Similarity=0.133  Sum_probs=34.6

Q ss_pred             hhCCCCCccCCCCccccCChhHHHHHHH-HhccCCCCCCCCCCCCCC
Q psy4268          37 ECGKLPAFPCTLCSYATKRKTSLASHYY-RKHVGEDGALPPPHEPDY   82 (86)
Q Consensus        37 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~~~~~~~~~~~~~~~~   82 (86)
                      +.+.++ |.|..|++.|.....|..|++ .|.++++..... +...|
T Consensus         7 ~~~~k~-~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~-C~k~F   51 (54)
T 2eps_A            7 GSVGKP-YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV-WVSGP   51 (54)
T ss_dssp             CCSSCC-EECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS-SCCSS
T ss_pred             CCCCCC-eECCCCCcccCCHHHHHHHHHHhcCCCCCccCCC-CCCCC
Confidence            566788 999999999999999999987 788877765432 44433

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.58  E-value=2.6e-08  Score=36.28  Aligned_cols=27  Identities=22%  Similarity=0.556  Sum_probs=23.6

Q ss_pred             CCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268          41 LPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        41 ~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      ++ |.|..|++.|.....|..|++.|++
T Consensus         2 k~-~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            2 RP-YSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CS-EECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cC-ccCCCCCcccCCHHHHHHHHHhcCC
Confidence            46 9999999999999999999877653

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.58  E-value=3e-08  Score=38.85  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=23.9

Q ss_pred             hhCCCCCccCCCCccccCChhHHHHHH
Q psy4268          37 ECGKLPAFPCTLCSYATKRKTSLASHY   63 (86)
Q Consensus        37 ~~~~~~~~~c~~c~~~f~~~~~l~~h~   63 (86)
                      +.+++| |.|..|++.|.+.++|..|+
T Consensus         3 ~~gekp-~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPAR-FMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCC-CEETTTTEECSCHHHHHHHH
T ss_pred             CCCccC-eECCCCCCccCCHhHccCcC
Confidence            457889 99999999999999999997

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=6.5e-09  Score=38.32  Aligned_cols=28  Identities=29%  Similarity=0.579  Sum_probs=25.3

Q ss_pred             CceecccccccccChHHHHHHHHHhhCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      ++|.|..|++.|.....|..|++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            4799999999999999999999988764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=7.9e-09  Score=46.92  Aligned_cols=41  Identities=17%  Similarity=0.348  Sum_probs=34.4

Q ss_pred             ccccccCCCC---CCceecccccccccChHHHHHHHH-HhhCCCC
Q psy4268           2 LGYYFSAPSG---EKRYLCDSCDRTYSNRSSLKRHMN-YECGKLP   42 (86)
Q Consensus         2 l~~h~~~h~~---~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~   42 (86)
                      |..|++.|.+   +++|.|..|++.|.....|..|++ .|.+..+
T Consensus        23 L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A           23 LNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             HHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             HHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            5678888875   899999999999999999999995 4666554

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.57  E-value=1.1e-09  Score=41.68  Aligned_cols=30  Identities=13%  Similarity=0.458  Sum_probs=27.7

Q ss_pred             CceecccccccccChHHHHHHHHHhhCCCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLP   42 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   42 (86)
                      +||.|..|++.|.....|..|+++|+++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            579999999999999999999999998877

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.99  E-value=6.8e-09  Score=38.46  Aligned_cols=25  Identities=16%  Similarity=0.265  Sum_probs=13.6

Q ss_pred             ccCCCCccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|..|++.|.....|..|++.|++
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            4 YVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            5555555555555555555555444

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.98  E-value=7.3e-09  Score=38.36  Aligned_cols=29  Identities=31%  Similarity=0.788  Sum_probs=26.0

Q ss_pred             CCceecccccccccChHHHHHHHHHhhCC
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      +++|.|..|++.|.....|..|++.|.+.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            46899999999999999999999988764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.56  E-value=3.1e-08  Score=36.59  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=15.4

Q ss_pred             ccCCCCccccCChhHHHHH-HHHhccC
Q psy4268          44 FPCTLCSYATKRKTSLASH-YYRKHVG   69 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h-~~~~~~~   69 (86)
                      |.|..|++.|.....|..| ++.|.++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            3 YACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             SBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             cCCcccCcccCChHHHHHHHHHHccCC
Confidence            5666666666666666666 4444443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.54  E-value=2.9e-08  Score=36.02  Aligned_cols=25  Identities=24%  Similarity=0.567  Sum_probs=22.4

Q ss_pred             CCCccCCCCccccCChhHHHHHHHHh
Q psy4268          41 LPAFPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        41 ~~~~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      ++ |.|..|++.|.....|..|++.|
T Consensus         2 k~-~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 AP-YRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CT-EEETTTTEEESCHHHHHHHHTTC
T ss_pred             cC-cCCCCCCcccCCHHHHHHHHHhc
Confidence            46 99999999999999999998665

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.53  E-value=5.2e-08  Score=35.10  Aligned_cols=26  Identities=31%  Similarity=0.735  Sum_probs=23.2

Q ss_pred             ceecccccccccChHHHHHHHHHhhC
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~   39 (86)
                      +|.|..|++.|.....|..|++.|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            58899999999999999999988865

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=1.2e-09  Score=48.90  Aligned_cols=37  Identities=19%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             CCceecccccccccChHHHHHHHHHhhCCCCCccCCCC
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC   49 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   49 (86)
                      +++|.|..|++.|.....|..|++.|.+.++ |.|..|
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~-~~C~~C   73 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKT-SGPSSG   73 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCC-SSCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHhhcCCCC-CCCCCC
Confidence            7899999999999999999999999999999 999877

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.49  E-value=5.5e-08  Score=35.89  Aligned_cols=28  Identities=36%  Similarity=0.801  Sum_probs=24.6

Q ss_pred             CceecccccccccChHHHHHH-HHHhhCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRH-MNYECGK   40 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h-~~~~~~~   40 (86)
                      ++|.|..|++.|.....|..| ++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            479999999999999999999 6777764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.45  E-value=4.6e-08  Score=45.73  Aligned_cols=39  Identities=13%  Similarity=0.185  Sum_probs=34.0

Q ss_pred             HHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          35 NYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        35 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      ++|.+.++ |.|..|++.|.....|..|++.|+++++...
T Consensus        18 ~~H~~~kp-y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C   56 (88)
T 1x6f_A           18 GPRLQNST-YQCKHCDSKLQSTAELTSHLNIHNEEFQKRA   56 (88)
T ss_dssp             CSCCCCSC-EECSSSCCEESSHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCCC-CcCCCCCCEeCCHHHHHHHHHHhCCCCCccc
Confidence            46788899 9999999999999999999999998775443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.81  E-value=2.4e-08  Score=35.79  Aligned_cols=23  Identities=22%  Similarity=0.480  Sum_probs=12.4

Q ss_pred             ccCCCCccccCChhHHHHHHHHh
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      |.|..|++.|.....|..|++.|
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            3 YVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            55555555555555555555443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.79  E-value=3e-08  Score=35.55  Aligned_cols=25  Identities=28%  Similarity=0.772  Sum_probs=22.8

Q ss_pred             CceecccccccccChHHHHHHHHHh
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      +||.|..|++.|.....|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            5799999999999999999998876

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.41  E-value=2.2e-07  Score=33.85  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=11.1

Q ss_pred             ccCC--CCccccCChhHHHHHHHHh
Q psy4268          44 FPCT--LCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        44 ~~c~--~c~~~f~~~~~l~~h~~~~   66 (86)
                      |.|.  .|++.|.....|..|++.|
T Consensus         3 ~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            3 YVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             EEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCcCCcCcCccCCHHHHHHHHHHh
Confidence            4444  4555555554555544443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.33  E-value=3.1e-07  Score=33.41  Aligned_cols=27  Identities=33%  Similarity=0.867  Sum_probs=24.3

Q ss_pred             Cceecc--cccccccChHHHHHHHHHhhC
Q psy4268          13 KRYLCD--SCDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus        13 ~~~~c~--~c~~~~~~~~~l~~h~~~~~~   39 (86)
                      ++|.|.  .|++.|.....|..|+++|.+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            478999  999999999999999998764

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.23  E-value=1.2e-08  Score=44.55  Aligned_cols=39  Identities=10%  Similarity=0.103  Sum_probs=31.8

Q ss_pred             HHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          32 RHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        32 ~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      .|++.|.+.++ |.|..|++.|.....|.   +.|.++++...
T Consensus         4 ~h~~~H~~~k~-~~C~~C~k~F~~~~~l~---~~H~~~k~~~C   42 (62)
T 1vd4_A            4 TDERDSTNRAS-FKCPVCSSTFTDLEANQ---LFDPMTGTFRC   42 (62)
T ss_dssp             CCSSSCCSSSE-EECSSSCCEEEHHHHHH---HEETTTTEEBC
T ss_pred             hHHHHcCCCCC-ccCCCCCchhccHHHhH---hhcCCCCCEEC
Confidence            46677889999 99999999999988776   57888776544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.22  E-value=6.8e-06  Score=36.09  Aligned_cols=51  Identities=24%  Similarity=0.508  Sum_probs=41.5

Q ss_pred             eccc--ccccccChHHHHHHHH-HhhCCC------CCccCC--CCccccCChhHHHHHHHHhc
Q psy4268          16 LCDS--CDRTYSNRSSLKRHMN-YECGKL------PAFPCT--LCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        16 ~c~~--c~~~~~~~~~l~~h~~-~~~~~~------~~~~c~--~c~~~f~~~~~l~~h~~~~~   67 (86)
                      .|..  |++.|.....|..|+. .|.+..      + |.|.  .|++.+.....|..|++..|
T Consensus         3 ~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~-~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            3 KCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEP-LACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCC-EECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             eEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCC-CEeeCCCCcCCCCChHHHHhhccccC
Confidence            4444  9999999999999984 687765      5 8886  79999988899999987653

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.86  E-value=3e-06  Score=41.85  Aligned_cols=29  Identities=24%  Similarity=0.452  Sum_probs=18.5

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHH
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNY   36 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~   36 (86)
                      .|+|+++|.|..|++.|.....|..|.++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            45666666666666666666666666553

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.41  E-value=2.3e-05  Score=38.70  Aligned_cols=29  Identities=21%  Similarity=0.229  Sum_probs=25.5

Q ss_pred             HhhCCCCCccCCCCccccCChhHHHHHHHH
Q psy4268          36 YECGKLPAFPCTLCSYATKRKTSLASHYYR   65 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~   65 (86)
                      .++|..+ |.|..|++.|.+...|..|++.
T Consensus        44 d~tGekp-fyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGL-HRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGC-SEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcc-eEcccCcchhCCHHHHHHHHhh
Confidence            4677888 9999999999999999999853

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.32  E-value=5.6e-06  Score=37.36  Aligned_cols=43  Identities=16%  Similarity=0.140  Sum_probs=34.8

Q ss_pred             HHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCCCC
Q psy4268          29 SLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        29 ~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      .|..|+..+.+.++ +.|..|++.|. ...|..|+ .+.++++...
T Consensus         4 ~L~~H~~~~c~~r~-~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C   46 (75)
T 2d9k_A            4 GSSGHEETECPLRL-AVCQHCDLELS-ILKLKEHE-DYCGARTELC   46 (75)
T ss_dssp             CCSCCCCCCCCCCC-EECSSSCCEEC-HHHHHHHH-HHHHHCEEEC
T ss_pred             HHHhhCcccCCCcc-cCCcccChHhh-HHHHHHHH-hHcCCCceEc
Confidence            34567777888899 99999999995 78899998 8888877544

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.98  E-value=0.0022  Score=31.80  Aligned_cols=51  Identities=18%  Similarity=0.284  Sum_probs=40.3

Q ss_pred             CCceecccccccccChHHHHHHHH--Hh-------------------------------hCCCCCccCCCCccccCChhH
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMN--YE-------------------------------CGKLPAFPCTLCSYATKRKTS   58 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~--~~-------------------------------~~~~~~~~c~~c~~~f~~~~~   58 (86)
                      .+++.|.+|...|.....+..|..  .|                               .+... |-|..|...|.+...
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~C~~~f~s~~~  108 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRS-KCCPVCNMTFSSPVV  108 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTT-TEETTTTEECSSHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCC-eEcCCCCCEeCCHHH
Confidence            357899999999999998888873  12                               01224 679999999999999


Q ss_pred             HHHHH
Q psy4268          59 LASHY   63 (86)
Q Consensus        59 l~~h~   63 (86)
                      +..|.
T Consensus       109 ~~~H~  113 (127)
T 1zu1_A          109 AESHY  113 (127)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99887

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.31  E-value=0.0073  Score=24.68  Aligned_cols=22  Identities=27%  Similarity=0.714  Sum_probs=11.8

Q ss_pred             ceecccccccccChHHHHHHHH
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMN   35 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~   35 (86)
                      ++.|..|+..|...+.|..|++
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            4555555555555555555554

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.25  E-value=0.016  Score=23.65  Aligned_cols=27  Identities=15%  Similarity=0.146  Sum_probs=22.9

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |.|+.|+..|.....|..|++.--++.
T Consensus        13 ~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           13 KICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             eeCCcccccccchHHHHhhhhhcCcch
Confidence            899999999999999999996544443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.89  E-value=0.014  Score=22.18  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=19.3

Q ss_pred             ccCCCCccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|+.|.+.|.....|..|....|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            7788888888888888888766554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.37  E-value=0.014  Score=30.10  Aligned_cols=58  Identities=14%  Similarity=0.308  Sum_probs=40.3

Q ss_pred             CCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      -.+..|..|+..+ ....+..|....-..+. ..|..|+..+... .+..|.....|+.+.
T Consensus       108 ~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~-~~C~~C~~~~~~~-~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          108 FALMDCPQCQRPF-QKFHINIHILKDCPRRQ-VSCDNCAASMAFE-DKEIHDQNCPLALEH  165 (170)
T ss_dssp             TSEEECTTTCCEE-EGGGHHHHHHHTCTTCE-EECTTTCCEEEGG-GHHHHHTTCCC----
T ss_pred             ceeeECCCCChHH-HHHHHHHHhhhhCCCCC-eECCCCCCccCHH-HHHhHHHhCcChhhh
Confidence            3567788888766 56778888866666666 7899998877665 578888777777654

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=93.92  E-value=0.11  Score=19.91  Aligned_cols=23  Identities=17%  Similarity=0.505  Sum_probs=13.6

Q ss_pred             CceecccccccccChHHHHHHHH
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMN   35 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~   35 (86)
                      ....|..|+..|....++..|.+
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhe
Confidence            34556666666666666666654

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=93.77  E-value=0.11  Score=19.33  Aligned_cols=25  Identities=24%  Similarity=0.550  Sum_probs=16.8

Q ss_pred             CCceecccccccccChHHHHHHHHH
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNY   36 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~   36 (86)
                      .....|..|.+.|+...+|..|.+.
T Consensus         7 kikqhcrfckkkysdvknlikhire   31 (37)
T 2elu_A            7 GIKQHCRFCKKKYSDVKNLIKHIRD   31 (37)
T ss_dssp             CCCCEETTTTEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677777777777777777653

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=93.30  E-value=0.035  Score=25.72  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=9.4

Q ss_pred             cCCCCccccCChhHHHHHHHHhcc
Q psy4268          45 PCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        45 ~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      .|..||+.|..   |.+|...++|
T Consensus        23 iClecGK~fK~---LkRHL~~~hg   43 (87)
T 2jsp_A           23 VCLECGGSFKS---LKRHLTTHHS   43 (87)
T ss_dssp             ECTBTCCEESB---HHHHHHHTTC
T ss_pred             EecccchhhHH---HHHHHHHccC
Confidence            45555554442   3344444333

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=91.94  E-value=0.16  Score=19.85  Aligned_cols=24  Identities=21%  Similarity=0.564  Sum_probs=13.4

Q ss_pred             CceecccccccccChHHHHHHHHHh
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      ..+.|..|+..+.. ..+..|...|
T Consensus         8 ~~~~C~~C~~~i~~-~~~~EH~D~H   31 (39)
T 2i5o_A            8 DQVPCEKCGSLVPV-WDMPEHMDYH   31 (39)
T ss_dssp             CEEECTTTCCEEEG-GGHHHHHHHH
T ss_pred             CCcccccccCcCCc-ccccchhhHH
Confidence            34666666666554 3445555544

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=91.45  E-value=0.2  Score=24.73  Aligned_cols=28  Identities=18%  Similarity=0.406  Sum_probs=23.9

Q ss_pred             CCCCCCceecccccccccChHHHHHHHH
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMN   35 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~   35 (86)
                      .+.+...+.|.+|...|.....+..|..
T Consensus        87 ~~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           87 SDGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SSCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             ccCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            3456778999999999999999998875

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=91.21  E-value=0.13  Score=24.66  Aligned_cols=10  Identities=20%  Similarity=0.720  Sum_probs=6.2

Q ss_pred             ccCCCCcccc
Q psy4268          44 FPCTLCSYAT   53 (86)
Q Consensus        44 ~~c~~c~~~f   53 (86)
                      +.|..||..|
T Consensus        68 ~~C~~CG~~F   77 (105)
T 2gmg_A           68 AQCRKCGFVF   77 (105)
T ss_dssp             CBBTTTCCBC
T ss_pred             cChhhCcCee
Confidence            5666666665

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=91.01  E-value=0.3  Score=22.19  Aligned_cols=51  Identities=18%  Similarity=0.343  Sum_probs=34.8

Q ss_pred             CCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHH
Q psy4268           9 PSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH   62 (86)
Q Consensus         9 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h   62 (86)
                      +..---|.|..|+..+.. ..+..|...-.+... |.|..|++.|.... .+.|
T Consensus         5 ~~~MV~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~-~SCIDC~~~F~~~~-y~~H   55 (79)
T 1wjv_A            5 SSGMVFFTCNACGESVKK-IQVEKHVSNCRNCEC-LSCIDCGKDFWGDD-YKSH   55 (79)
T ss_dssp             SCCCCEEEESSSCCEEET-THHHHHHHHCTTCCE-EEETTTTEEEEGGG-TTTC
T ss_pred             CCceeEEEcCCCCCeeec-ccchhHHhhCCCCCc-EEecccCCeeCCCC-EeCE
Confidence            334456899999987654 556788654444345 89999999998643 4444

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=89.87  E-value=0.096  Score=21.28  Aligned_cols=36  Identities=17%  Similarity=0.564  Sum_probs=19.9

Q ss_pred             CceecccccccccChHHHHHHHHHhhCCCCCccCCCCcc
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSY   51 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~   51 (86)
                      +.|.|.+||+.+.-...-.  ......... +.|+.|+.
T Consensus         3 ~~y~C~vCGyvyd~~~Gd~--t~f~~lP~d-w~CP~Cg~   38 (46)
T 6rxn_A            3 QKYVCNVCGYEYDPAEHDN--VPFDQLPDD-WCCPVCGV   38 (46)
T ss_dssp             CCEEETTTCCEECGGGGTT--CCGGGSCTT-CBCTTTCC
T ss_pred             CEEECCCCCeEEeCCcCCC--cchhhCCCC-CcCcCCCC
Confidence            4589999998775322100  011111223 68999974

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=89.72  E-value=0.18  Score=26.96  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=20.0

Q ss_pred             CCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCcc
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSY   51 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~   51 (86)
                      ....|.|.+||+.+.             |..| ..|+.|+.
T Consensus       168 ~~~~~~C~~CG~i~~-------------g~~p-~~CP~C~~  194 (202)
T 1yuz_A          168 DDKFHLCPICGYIHK-------------GEDF-EKCPICFR  194 (202)
T ss_dssp             SCCEEECSSSCCEEE-------------SSCC-SBCTTTCC
T ss_pred             CCcEEEECCCCCEEc-------------CcCC-CCCCCCCC
Confidence            345799999998763             2456 89999974

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=88.73  E-value=0.31  Score=25.39  Aligned_cols=26  Identities=31%  Similarity=0.704  Sum_probs=19.2

Q ss_pred             CCceecccccccccChHHHHHHHHHhhCCCCCccCCCCcc
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSY   51 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~   51 (86)
                      ..-|.|.+||+.+.             +..| -.|+.|+.
T Consensus       136 ~~~~~C~~CG~i~~-------------~~~p-~~CP~Cg~  161 (170)
T 3pwf_A          136 KKVYICPICGYTAV-------------DEAP-EYCPVCGA  161 (170)
T ss_dssp             SCEEECTTTCCEEE-------------SCCC-SBCTTTCC
T ss_pred             CCeeEeCCCCCeeC-------------CCCC-CCCCCCCC
Confidence            45689999998763             3456 68999984

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=87.86  E-value=0.21  Score=20.95  Aligned_cols=21  Identities=33%  Similarity=0.608  Sum_probs=18.6

Q ss_pred             eecccccccccChHHHHHHHH
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMN   35 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~   35 (86)
                      -.|..|+..|.....++.|..
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            589999999999999988874

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=87.26  E-value=0.63  Score=16.76  Aligned_cols=19  Identities=21%  Similarity=0.613  Sum_probs=11.6

Q ss_pred             eecccccccccChHHHHHH
Q psy4268          15 YLCDSCDRTYSNRSSLKRH   33 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h   33 (86)
                      +.|.+|.........++.|
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H   22 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIH   22 (28)
T ss_dssp             EECTTSSCEESSHHHHHHH
T ss_pred             ccCccccccCcChHHHHHH
Confidence            5666666666666655555

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=86.27  E-value=0.71  Score=24.84  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=10.8

Q ss_pred             ccCCCCccccCC-hhHHHHHH
Q psy4268          44 FPCTLCSYATKR-KTSLASHY   63 (86)
Q Consensus        44 ~~c~~c~~~f~~-~~~l~~h~   63 (86)
                      ..|..|+..|.. -..|..|.
T Consensus       170 L~C~~C~~~f~n~~~~LK~HL  190 (204)
T 3sp4_A          170 LKCWRCGETFGRHFTKLKAHL  190 (204)
T ss_dssp             CBCTTTCCBCTTCHHHHHHHH
T ss_pred             ceeCCCCchhhcccHHHHHHH
Confidence            455556555544 45555554

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=82.13  E-value=1.6  Score=23.49  Aligned_cols=26  Identities=27%  Similarity=0.543  Sum_probs=21.5

Q ss_pred             CCceecccccccccC-hHHHHHHHHHh
Q psy4268          12 EKRYLCDSCDRTYSN-RSSLKRHMNYE   37 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~-~~~l~~h~~~~   37 (86)
                      ..+..|..|+..|.. -..|..|...+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            458899999999987 89999987643

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=80.18  E-value=0.83  Score=24.23  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=17.0

Q ss_pred             ccCCCCccccCChhHHHHHHHHhc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      |+|..||+ +..-.++..|++.|.
T Consensus       155 YKCe~CgK-YvDId~~~~Hlk~Hg  177 (226)
T 2czr_A          155 YKCEECGK-YVDIENLEAHLREHG  177 (226)
T ss_dssp             EECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             EehhhcCc-eecHHHHHHHHHHcC
Confidence            57999997 455667899986553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	86
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	5e-05
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	5e-05
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	6e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	9e-04
d2ghfa1	58	g.37.1.1 (A:45-102) Zinc fingers and homeoboxes pr	0.001
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.002
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.002
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.003

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 1e-05
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
          +K Y C  C ++++++S   RHM+   G    + C +C    K K  L  H  + H
Sbjct: 1  DKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-RPYGCGVCGKKFKMKHHLVGH-MKIH 53

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 5e-05
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
          SGEK Y C  C   ++   ++K H+
Sbjct: 4  SGEKPYECYICHARFTQSGTMKMHI 28

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (81), Expect = 5e-05
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
          SGEK Y C  C + +S  S L +H 
Sbjct: 3  SGEKPYGCVECGKAFSRSSILVQHQ 27

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 2e-04
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
          +GEK Y C  CD+T+  +  L  H 
Sbjct: 4  TGEKPYACSHCDKTFRQKQLLDMHF 28

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.0 bits (73), Expect = 6e-04
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
          +G K + C  CDR++S    L  H 
Sbjct: 7  TGIKPFQCPDCDRSFSRSDHLALHR 31

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (73), Expect = 9e-04
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
          S  K Y+C SC + +S    L  H+
Sbjct: 1  SVGKPYICQSCGKGFSRPDHLNGHI 25

>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc fingers and homeoboxes protein 1, ZHX1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.8 bits (72), Expect = 0.001
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 42 PAFPCTLCSYATKRKTSLASHYYRKHVGED 71
           ++ C  C++ TKR  +L+ H  + H GE+
Sbjct: 5  SSYVCVECNFLTKRYDALSEHNLKYHPGEE 34

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 30.7 bits (70), Expect = 0.002
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 12 EKRYLCDSCDRTYSNRSSLKRHM 34
          +K + C  C R +S    L  H+
Sbjct: 1  QKPFQCRICMRNFSRSDHLTTHI 23

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 30.9 bits (70), Expect = 0.002
 Identities = 6/25 (24%), Positives = 16/25 (64%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
          SG++ ++C  C   ++ +++  RH+
Sbjct: 3  SGKRPFVCRICLSAFTTKANCARHL 27

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.5 bits (69), Expect = 0.003
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
             +RY CD C +++S+ S L +H 
Sbjct: 8  RERRRYKCDECGKSFSHSSDLSKHR 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	86
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.82
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.64
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.59
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.57
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.53
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.5
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.48
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.48
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.43
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.41
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.41
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.39
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.37
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.37
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.37
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.35
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.34
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.34
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.32
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.31
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.28
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.27
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.25
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.15
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.15
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.12
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.12
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.12
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.08
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.04
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.97
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.95
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.92
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.89
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.89
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.79
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.77
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.77
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.66
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.56
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.55
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.49
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.45
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.43
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.4
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.38
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.38
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.36
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.17
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.13
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.1
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.07
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.07
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.05
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.96
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.96
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.91
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.84
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.8
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.78
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.75
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.75
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.74
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.73
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.72
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.72
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.71
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.69
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.66
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.63
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.61
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.55
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.52
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.37
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.32
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.24
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.2
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.16
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.98
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.94
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.92
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.87
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.86
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.83
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.77
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.66
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.27
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.12
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.06
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.99
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.45
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	95.21
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.84
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.67
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.61
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	94.58
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	94.41
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	94.41
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.05
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	93.81
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	93.31
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	92.72
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	91.62
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	91.41
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	91.24
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.13
d1fu9a_	36	U-shaped transcription factor, different fingers {	89.93
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	88.19
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	86.63
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	86.17
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	85.97
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	83.56
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	83.39
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	82.78
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	81.46

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=80.36  Aligned_cols=53  Identities=30%  Similarity=0.671  Sum_probs=50.3

Q ss_pred             CCceecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCChhHHHHHHHHh
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      ||+|.|. ||+.|.....|..|+++|+++++ |.|..|++.|.....|..|++.|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekp-y~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCS-EECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccC-CcCCCcCCEecCHHHHHHHHhcC
Confidence            6899995 99999999999999999999999 99999999999999999998664

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-16  Score=63.16  Aligned_cols=37  Identities=27%  Similarity=0.556  Sum_probs=33.3

Q ss_pred             ccccCCCCCCceecccccccccChHHHHHHHHHhhCC
Q psy4268           4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         4 ~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      +|+++|++++||.|..|+++|...++|..|+++|+|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            6888999999999999999999999999999998874

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-15  Score=58.12  Aligned_cols=33  Identities=36%  Similarity=0.641  Sum_probs=24.7

Q ss_pred             CCCCCCceecccccccccChHHHHHHHHHhhCC
Q psy4268           8 APSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         8 ~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      +|+|++||.|..|+++|...+.|..|+++|+|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            477777777777777777777777777777764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.4e-15  Score=59.41  Aligned_cols=35  Identities=26%  Similarity=0.468  Sum_probs=30.6

Q ss_pred             cccCCCCCCceecccccccccChHHHHHHHHHhhC
Q psy4268           5 YFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus         5 h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   39 (86)
                      |.++|+|++||.|..|+++|....+|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            67889999999999999999999999999888764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.3e-15  Score=57.01  Aligned_cols=34  Identities=29%  Similarity=0.632  Sum_probs=26.9

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHhhCC
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      ++|+|++||.|..|+++|.....|..|+++|.++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4688888888888888888888888888877654

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.9e-16  Score=60.54  Aligned_cols=37  Identities=14%  Similarity=0.216  Sum_probs=34.2

Q ss_pred             HHHHHhhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268          32 RHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        32 ~h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      +|+++|++++| |.|..||+.|...++|..|++.|+||
T Consensus         2 rH~~~Ht~ekp-y~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRR-YKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCS-SBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCC-EecCCCCceeeCHHHHHHhCccCCCC
Confidence            46778999999 99999999999999999999999986

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=57.10  Aligned_cols=36  Identities=28%  Similarity=0.679  Sum_probs=31.0

Q ss_pred             CCCceecccccccccChHHHHHHHH-HhhCCCCCccCC
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHMN-YECGKLPAFPCT   47 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~c~   47 (86)
                      .+|||.|..|++.|....+|..|++ +|++++| |.|.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekp-y~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCC-CCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcC-cCCc
Confidence            4788999999999999999999975 6999998 8886

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.6e-14  Score=54.76  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=31.1

Q ss_pred             HhhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268          36 YECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        36 ~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      +|+|++| |.|..|++.|.+.+.|..|++.|+||
T Consensus         1 IHTgekp-y~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKP-YGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCC-EECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCC-eeCCCCCCEeCchHHhHhhccccCCC
Confidence            4789999 99999999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.6e-14  Score=54.86  Aligned_cols=32  Identities=19%  Similarity=0.621  Sum_probs=25.3

Q ss_pred             CCCCCceecccccccccChHHHHHHHHHhhCC
Q psy4268           9 PSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         9 h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      |+|++||.|.+|++.|....+|..|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            67888888888888888888888888877654

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.6e-14  Score=53.72  Aligned_cols=31  Identities=29%  Similarity=0.595  Sum_probs=22.1

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHh
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      ++|+|++||.|..|++.|....+|..|++.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            3577777777777777777777777776543

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.7e-14  Score=54.24  Aligned_cols=34  Identities=26%  Similarity=0.560  Sum_probs=31.4

Q ss_pred             HHhhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268          35 NYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        35 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      ++|+|++| |.|..|++.|.+...|..|++.|+++
T Consensus         1 R~HTgekP-y~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKP-YACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCC-EECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCC-EECCCCCCCcCCHhHHHHhCcccCCC
Confidence            46899999 99999999999999999999998864

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.1e-13  Score=50.55  Aligned_cols=28  Identities=29%  Similarity=0.662  Sum_probs=16.8

Q ss_pred             CCceecccccccccChHHHHHHHHHhhC
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~   39 (86)
                      ||||.|..|+++|....+|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            4566666666666666666666666554

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=3.6e-14  Score=55.36  Aligned_cols=35  Identities=29%  Similarity=0.435  Sum_probs=32.0

Q ss_pred             HHHHhhCCCCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268          33 HMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        33 h~~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.++|+|++| |.|..|++.|.+..+|..|++.|.+
T Consensus         2 h~R~HTgeKP-y~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSS-BCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccC-eEeCCCCCEecCHHHHHHHHhcCcC
Confidence            5678999999 9999999999999999999988764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.37  E-value=2.7e-13  Score=49.99  Aligned_cols=27  Identities=30%  Similarity=0.605  Sum_probs=17.1

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |.|..|++.|.+...|..|+++|+|++
T Consensus         3 ~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           3 FVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             BCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CCCCCCCCCCCCchHcccccCcccCCC
Confidence            666666666666666666666666653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.3e-13  Score=49.67  Aligned_cols=27  Identities=22%  Similarity=0.423  Sum_probs=18.1

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |.|..|++.|.+++.|..|++.|+|++
T Consensus         3 y~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           3 FACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             SCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             EECCcCCCeecchHHhhhhcCccCCcC
Confidence            666666666666666666666666654

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.1e-13  Score=56.59  Aligned_cols=37  Identities=19%  Similarity=0.472  Sum_probs=24.7

Q ss_pred             cccccCCCCCCceeccc--ccccccChHHHHHHHHHhhCC
Q psy4268           3 GYYFSAPSGEKRYLCDS--CDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus         3 ~~h~~~h~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      ..|+. |.|++||.|.+  |++.|...++|..|+++|+|+
T Consensus         8 ~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           8 DKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             cchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            44543 66777777765  777777777777777777665

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.1e-13  Score=52.72  Aligned_cols=34  Identities=21%  Similarity=0.528  Sum_probs=30.7

Q ss_pred             HHhhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268          35 NYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        35 ~~~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      ++|+|++| |.|..|++.|.+..+|..|++.++++
T Consensus         1 R~HTgekP-~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKP-YECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCS-EECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCC-EeCCCCcccccchHHHHHHcccccCC
Confidence            36899999 99999999999999999998777764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.34  E-value=4.5e-13  Score=49.35  Aligned_cols=29  Identities=24%  Similarity=0.723  Sum_probs=27.4

Q ss_pred             CceecccccccccChHHHHHHHHHhhCCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      +||.|.+|+++|...+.|..|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999874

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=5e-13  Score=48.73  Aligned_cols=28  Identities=25%  Similarity=0.534  Sum_probs=26.1

Q ss_pred             CCCCccCCCCccccCChhHHHHHHHHhcc
Q psy4268          40 KLPAFPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        40 ~~~~~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      ++| |.|..|++.|.++.+|..|++.|+|
T Consensus         1 EKP-y~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKP-FQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCC-EECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcC-ccCCCCcCEecccccccccCCCccC
Confidence            468 9999999999999999999999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.9e-13  Score=48.62  Aligned_cols=29  Identities=21%  Similarity=0.597  Sum_probs=27.4

Q ss_pred             CceecccccccccChHHHHHHHHHhhCCC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      |||.|..|+++|...+.|..|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999874

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=7.4e-13  Score=50.71  Aligned_cols=32  Identities=31%  Similarity=0.480  Sum_probs=29.4

Q ss_pred             hhCCCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268          37 ECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        37 ~~~~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |+|++| |.|..|++.|.+..+|..|++.|+..
T Consensus         2 ~TGekP-y~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRP-FVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSC-EECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCcc-ccCCCCCCcccChHHHHHHccccCCc
Confidence            578999 99999999999999999999888764

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-13  Score=57.93  Aligned_cols=36  Identities=22%  Similarity=0.420  Sum_probs=33.6

Q ss_pred             ccccccCCCCCCceecccccccccChHHHHHHHHHh
Q psy4268           2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus         2 l~~h~~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      |..|+++|+|++||.|..|+++|.....|..|+++|
T Consensus        18 l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1          18 RDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             HHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             hHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            567999999999999999999999999999999865

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2e-12  Score=46.11  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=11.8

Q ss_pred             ccCCCCccccCChhHHHHHHHHh
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      |+|..||+.|.+++.|..|++.|
T Consensus         3 y~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           3 YKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHH
T ss_pred             ccCCCCcCeeccCcccccCccCC
Confidence            55555555555555555555444

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.9e-12  Score=45.67  Aligned_cols=26  Identities=31%  Similarity=0.618  Sum_probs=24.7

Q ss_pred             CceecccccccccChHHHHHHHHHhh
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~   38 (86)
                      |||.|..||++|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999985

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.2e-12  Score=48.85  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=31.0

Q ss_pred             CCCCCccCCCCccccCChhHHHHHHH-HhccCCCCCC
Q psy4268          39 GKLPAFPCTLCSYATKRKTSLASHYY-RKHVGEDGAL   74 (86)
Q Consensus        39 ~~~~~~~c~~c~~~f~~~~~l~~h~~-~~~~~~~~~~   74 (86)
                      .++| |.|..||+.|....+|..|++ .|+++++...
T Consensus         2 ~~Kp-y~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           2 VGKP-YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             SSCC-EECSSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCCC-ccCCCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence            3578 999999999999999999976 6999999765

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.6e-11  Score=46.61  Aligned_cols=32  Identities=22%  Similarity=0.685  Sum_probs=23.6

Q ss_pred             eeccc--ccccccChHHHHHHHHHhhCCCCCccCC
Q psy4268          15 YLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCT   47 (86)
Q Consensus        15 ~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~   47 (86)
                      |.|..  |++.|...+.|..|+++|+|++| |.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekp-y~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCC-CSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCC-EeCC
Confidence            55665  77777777777777777777777 7764

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=1.2e-12  Score=53.34  Aligned_cols=39  Identities=21%  Similarity=0.391  Sum_probs=34.2

Q ss_pred             HHHHHHHhhCCCCCccCCC--CccccCChhHHHHHHHHhccCC
Q psy4268          30 LKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        30 l~~h~~~~~~~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      +..|+ .|.+++| |.|..  |++.|....+|..|++.|+|++
T Consensus         7 l~~h~-~h~gekp-y~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKT-FECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTE-EECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCC-eECCcCCCCccccCchHHHhhcccccCCC
Confidence            44555 4899999 99976  9999999999999999999985

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.3e-11  Score=44.47  Aligned_cols=26  Identities=23%  Similarity=0.418  Sum_probs=15.2

Q ss_pred             ccCCC--CccccCChhHHHHHHHHhccC
Q psy4268          44 FPCTL--CSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        44 ~~c~~--c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |.|..  |++.|.+...|..|++.|+|+
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           3 HKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             eeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            55554  666666666666666555553

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.7e-11  Score=44.32  Aligned_cols=28  Identities=32%  Similarity=0.634  Sum_probs=26.3

Q ss_pred             Cceeccc--ccccccChHHHHHHHHHhhCC
Q psy4268          13 KRYLCDS--CDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        13 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      |||.|..  |+++|...+.|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899999  999999999999999999985

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.9e-11  Score=44.31  Aligned_cols=25  Identities=24%  Similarity=0.394  Sum_probs=12.9

Q ss_pred             ccCCC--CccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTL--CSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~--c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|..  |++.|.+...|..|++.|+|
T Consensus         3 ~~C~~~gCgk~F~~~~~L~~H~r~HTG   29 (30)
T d1ubdc3           3 FQCTFEGCGKRFSLDFNLRTHVRIHTG   29 (30)
T ss_dssp             EECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCceECcHHHcCccccccCC
Confidence            45543  55555555555555555544

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5.4e-11  Score=43.91  Aligned_cols=28  Identities=25%  Similarity=0.612  Sum_probs=26.2

Q ss_pred             Cceeccc--ccccccChHHHHHHHHHhhCC
Q psy4268          13 KRYLCDS--CDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        13 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      |||.|.+  |+++|...+.|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899988  999999999999999999985

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=8.1e-11  Score=43.76  Aligned_cols=27  Identities=26%  Similarity=0.416  Sum_probs=16.0

Q ss_pred             ccCC--CCccccCChhHHHHHHHHhccCC
Q psy4268          44 FPCT--LCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        44 ~~c~--~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |.|.  .|++.|.+..+|..|+++|+|++
T Consensus         3 f~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            5553  36666666666666666666553

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.5e-10  Score=42.41  Aligned_cols=29  Identities=21%  Similarity=0.669  Sum_probs=26.3

Q ss_pred             Cceeccc--ccccccChHHHHHHHHHhhCCC
Q psy4268          13 KRYLCDS--CDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus        13 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      +||.|..  |++.|...++|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            6899964  9999999999999999999874

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=2.6e-10  Score=41.65  Aligned_cols=24  Identities=21%  Similarity=0.528  Sum_probs=12.3

Q ss_pred             ccCCC--CccccCChhHHHHHHHHhc
Q psy4268          44 FPCTL--CSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        44 ~~c~~--c~~~f~~~~~l~~h~~~~~   67 (86)
                      |.|..  |++.|.++..|..|++.|+
T Consensus         3 ~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           3 YACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             EECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             eECCCCCCCcEECchhHhhhhcCccC
Confidence            44543  5555555555555555544

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=9.1e-10  Score=42.19  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=28.2

Q ss_pred             ccCCC--CccccCChhHHHHHHHHhccCCCCCC
Q psy4268          44 FPCTL--CSYATKRKTSLASHYYRKHVGEDGAL   74 (86)
Q Consensus        44 ~~c~~--c~~~f~~~~~l~~h~~~~~~~~~~~~   74 (86)
                      |.|..  |++.|.+...|..|++.|+|+++...
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C   34 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC   34 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeC
Confidence            67865  99999999999999999999999765

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=8.7e-10  Score=41.11  Aligned_cols=26  Identities=31%  Similarity=0.719  Sum_probs=13.1

Q ss_pred             Cceeccc--ccccccChHHHHHHHHHhh
Q psy4268          13 KRYLCDS--CDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        13 ~~~~c~~--c~~~~~~~~~l~~h~~~~~   38 (86)
                      +||.|..  |++.|....+|..|+++|+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            4455544  5555555555555555443

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=5.4e-10  Score=40.78  Aligned_cols=27  Identities=37%  Similarity=0.880  Sum_probs=25.4

Q ss_pred             Cceeccc--ccccccChHHHHHHHHHhhC
Q psy4268          13 KRYLCDS--CDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus        13 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~   39 (86)
                      |||.|..  |+++|....+|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899988  99999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.1e-09  Score=39.57  Aligned_cols=23  Identities=26%  Similarity=0.590  Sum_probs=13.7

Q ss_pred             ccCCC--CccccCChhHHHHHHHHh
Q psy4268          44 FPCTL--CSYATKRKTSLASHYYRK   66 (86)
Q Consensus        44 ~~c~~--c~~~f~~~~~l~~h~~~~   66 (86)
                      |.|..  |++.|.+..+|..|++.|
T Consensus         3 f~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           3 YVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             cCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            55544  666666666666666555

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=4.2e-09  Score=39.20  Aligned_cols=29  Identities=24%  Similarity=0.444  Sum_probs=25.3

Q ss_pred             CCCCccCCC--CccccCChhHHHHHHHHhccC
Q psy4268          40 KLPAFPCTL--CSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        40 ~~~~~~c~~--c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      ++| |.|..  |++.|.+..+|..|++.|+..
T Consensus         1 ErP-~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRP-YSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCS-BCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcC-eECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            367 99987  999999999999999888753

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.1e-09  Score=38.79  Aligned_cols=26  Identities=23%  Similarity=0.724  Sum_probs=24.1

Q ss_pred             Cceeccc--ccccccChHHHHHHHHHhh
Q psy4268          13 KRYLCDS--CDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        13 ~~~~c~~--c~~~~~~~~~l~~h~~~~~   38 (86)
                      +||.|..  |+++|...++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899998  9999999999999999884

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.5e-09  Score=35.36  Aligned_cols=24  Identities=29%  Similarity=0.703  Sum_probs=11.5

Q ss_pred             eecccccccccChHHHHHHHHHhh
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~   38 (86)
                      +.|.+|++.|+....|..|++.|+
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CccchhhhHhcchhHHHHHhhccC
Confidence            344445555555555544444443

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=2.2e-08  Score=35.05  Aligned_cols=25  Identities=24%  Similarity=0.489  Sum_probs=14.9

Q ss_pred             CCCccCCCCccccCChhHHHHHHHHh
Q psy4268          41 LPAFPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        41 ~~~~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      +| |.|..||+.|.++....+|.+.|
T Consensus         2 kP-f~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KP-FACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CC-EECTTTCCEESSHHHHHHHHGGG
T ss_pred             CC-cccchhhhhhhcchhhhhhhhhc
Confidence            45 66666666666666666665444

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=3e-08  Score=34.72  Aligned_cols=27  Identities=33%  Similarity=0.712  Sum_probs=24.6

Q ss_pred             CCceecccccccccChHHHHHHHHHhh
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~   38 (86)
                      ++||.|.+||+.|..+....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999988774

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.6e-08  Score=34.40  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=22.9

Q ss_pred             ccCCCCccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      .+|..|++.|.+...|..|++.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            6899999999999999999988875

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.5e-08  Score=35.08  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=17.6

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      ..|..||+.|..++.|.+|+..|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            35677777777777777776666553

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.4e-08  Score=35.83  Aligned_cols=28  Identities=25%  Similarity=0.593  Sum_probs=14.3

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCC
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLP   42 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~   42 (86)
                      ..|..||+.|.....|.+|..+|.+++|
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekp   33 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKP   33 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence            4455555555555555555545555544

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=9.5e-08  Score=33.36  Aligned_cols=27  Identities=19%  Similarity=0.362  Sum_probs=22.5

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |.|..|+......+.|++|++.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            678888888888888888888888764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5.6e-08  Score=35.26  Aligned_cols=29  Identities=14%  Similarity=0.232  Sum_probs=26.8

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      ..|..||+.|.....|.+|...|.+++|+
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            68999999999999999999889999885

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.8e-07  Score=33.18  Aligned_cols=27  Identities=22%  Similarity=0.573  Sum_probs=14.1

Q ss_pred             CceecccccccccChHHHHHHHHHhhC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~   39 (86)
                      +||.|.+|...|..+..+..|.++|.|
T Consensus         2 kp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCcccchHHHHhhccccceEeeecccC
Confidence            455555555555555555555555444

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1e-07  Score=33.10  Aligned_cols=27  Identities=26%  Similarity=0.552  Sum_probs=15.7

Q ss_pred             CceecccccccccChHHHHHHHHHhhC
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~~   39 (86)
                      +||+|..|.+.-...+.|..|.+.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            456666666555555556666555544

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=2.8e-07  Score=31.40  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=20.7

Q ss_pred             cCCCCccccCChhHHHHHHHHhccCC
Q psy4268          45 PCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        45 ~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      .|+.|.+.|.+...|..|.+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57778888888888888888888764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.4e-07  Score=32.56  Aligned_cols=27  Identities=30%  Similarity=0.636  Sum_probs=24.3

Q ss_pred             ceecccccccccChHHHHHHHHHhhCC
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      .+.|..||++|...+.|.+|+..|+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            468999999999999999999988874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.5e-07  Score=32.81  Aligned_cols=29  Identities=24%  Similarity=0.559  Sum_probs=26.1

Q ss_pred             CCCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268          40 KLPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        40 ~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      ++| |.|..|...|.+..-+..|.+.|.|.
T Consensus         1 ekp-~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKP-YSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCS-SEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCC-cccchHHHHhhccccceEeeecccCc
Confidence            367 99999999999999999999988875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.7e-07  Score=30.99  Aligned_cols=28  Identities=29%  Similarity=0.705  Sum_probs=25.2

Q ss_pred             CCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268          41 LPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        41 ~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      +| |+|..|......++.|..|.+.|+|+
T Consensus         2 rp-fkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           2 RP-FKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CC-EECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             Cc-ceeeecccccCCchheEEeeecccCc
Confidence            57 99999999999999999999988874

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.4e-06  Score=30.82  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=14.7

Q ss_pred             ccCCC--CccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTL--CSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~--c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|..  |++.+...++|.+|++.++|
T Consensus         3 Y~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           3 YVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             eecccCCCCcccCCHHHHHHHHHhhCC
Confidence            55544  66666666666666655443

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.8e-06  Score=30.53  Aligned_cols=27  Identities=37%  Similarity=0.865  Sum_probs=23.6

Q ss_pred             Cceeccc--ccccccChHHHHHHHHHhhC
Q psy4268          13 KRYLCDS--CDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus        13 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~   39 (86)
                      +||.|.+  |++++...++|..|++.+.|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            6899998  99999999999999987543

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.3e-06  Score=29.36  Aligned_cols=25  Identities=36%  Similarity=0.774  Sum_probs=17.3

Q ss_pred             CceecccccccccChHHHHHHHHHh
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      +||.|..|.++-...++|..|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            5677777777666677777776665

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.07  E-value=1.2e-06  Score=29.36  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=17.5

Q ss_pred             ccCCCCccccCChhHHHHHHHHh
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      |+|..|.++|...+.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            46777888888888888887655

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.05  E-value=3.1e-06  Score=31.95  Aligned_cols=25  Identities=32%  Similarity=0.689  Sum_probs=14.3

Q ss_pred             ceecccccccccChHHHHHHHHHhh
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~   38 (86)
                      .|.|..|++.|.+...|-.|++.|.
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             ccCCCCCCCccCCcccccchHhhhc
Confidence            4555555555555555555555554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.4e-06  Score=31.35  Aligned_cols=24  Identities=25%  Similarity=0.624  Sum_probs=13.3

Q ss_pred             CCCCCccCCCCccccCChhHHHHHH
Q psy4268          39 GKLPAFPCTLCSYATKRKTSLASHY   63 (86)
Q Consensus        39 ~~~~~~~c~~c~~~f~~~~~l~~h~   63 (86)
                      |-+| |.|..|++.|-+..++.+|.
T Consensus         2 GiKP-YeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           2 GIKP-YECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCC-EECSSSCCEESCHHHHHHHH
T ss_pred             CCCc-eeccchhhhhhhHHHHHHhh
Confidence            3445 55666666665555555553

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4e-06  Score=31.93  Aligned_cols=24  Identities=38%  Similarity=0.821  Sum_probs=20.9

Q ss_pred             CCCCceecccccccccChHHHHHH
Q psy4268          10 SGEKRYLCDSCDRTYSNRSSLKRH   33 (86)
Q Consensus        10 ~~~~~~~c~~c~~~~~~~~~l~~h   33 (86)
                      +|-|||.|.+|++.|....++.+|
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH   24 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRH   24 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHh
Confidence            467999999999999998887766

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=9.2e-06  Score=28.20  Aligned_cols=26  Identities=27%  Similarity=0.612  Sum_probs=24.2

Q ss_pred             eecccccccccChHHHHHHHHHhhCC
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      |.|..|+......+.|+.|.++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            78999999999999999999999875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.84  E-value=1.5e-05  Score=30.04  Aligned_cols=28  Identities=14%  Similarity=0.450  Sum_probs=24.8

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGED   71 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~~   71 (86)
                      |.|..|++.|.+...|-.|+..|..++.
T Consensus         6 ~~C~~C~k~F~s~qALGGH~~~Hr~~r~   33 (37)
T d1njqa_           6 YTCSFCKREFRSAQALGGHMNVHRRDRA   33 (37)
T ss_dssp             EECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             cCCCCCCCccCCcccccchHhhhcchHH
Confidence            8999999999999999999988866554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.4e-05  Score=27.89  Aligned_cols=23  Identities=30%  Similarity=0.667  Sum_probs=12.4

Q ss_pred             ceecccccccccChHHHHHHHHH
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNY   36 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~   36 (86)
                      ||.|..|.+.....++|..|..+
T Consensus         2 py~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhc
Confidence            45555555555555555555544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-05  Score=28.01  Aligned_cols=23  Identities=26%  Similarity=0.758  Sum_probs=13.8

Q ss_pred             ceecccccccccChHHHHHHHHH
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNY   36 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~   36 (86)
                      ||.|..|.-+|....+|..|+.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            45566666666666666666554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=2.1e-05  Score=26.59  Aligned_cols=26  Identities=23%  Similarity=0.511  Sum_probs=23.7

Q ss_pred             ecccccccccChHHHHHHHHHhhCCC
Q psy4268          16 LCDSCDRTYSNRSSLKRHMNYECGKL   41 (86)
Q Consensus        16 ~c~~c~~~~~~~~~l~~h~~~~~~~~   41 (86)
                      .|..|.+.|.+...|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            68999999999999999999998864

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.75  E-value=1e-05  Score=26.97  Aligned_cols=24  Identities=33%  Similarity=0.794  Sum_probs=21.6

Q ss_pred             eecccccccccChHHHHHHHHHhh
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~   38 (86)
                      |.|..|..+|-..+.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            679999999999999999998763

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5e-06  Score=29.61  Aligned_cols=21  Identities=33%  Similarity=0.909  Sum_probs=10.7

Q ss_pred             ceeccc--ccccccChHHHHHHH
Q psy4268          14 RYLCDS--CDRTYSNRSSLKRHM   34 (86)
Q Consensus        14 ~~~c~~--c~~~~~~~~~l~~h~   34 (86)
                      ||.|..  |.++|+..+....|+
T Consensus         2 PY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHH
T ss_pred             CccccCCChhhhhcchhhhhhhc
Confidence            455554  555555555555554

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1.6e-05  Score=27.21  Aligned_cols=26  Identities=31%  Similarity=0.669  Sum_probs=23.1

Q ss_pred             CCCccCCCCccccCChhHHHHHHHHhc
Q psy4268          41 LPAFPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        41 ~~~~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      +| ++|..|...-..+++|.+|++.|.
T Consensus         2 kp-~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KP-YKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CS-EECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CC-cccccccchhcchhhHhhhhhccc
Confidence            56 999999999999999999997764

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.73  E-value=2.3e-05  Score=27.25  Aligned_cols=20  Identities=15%  Similarity=0.177  Sum_probs=10.9

Q ss_pred             CccccCChhHHHHHHHHhcc
Q psy4268          49 CSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        49 c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.+.|.....|.+|.-.|+|
T Consensus        10 c~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CCCEESSTTHHHHHHHHHHT
T ss_pred             ccccchhhhhhhhhhccccC
Confidence            55555555555555545544

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=1.8e-05  Score=26.36  Aligned_cols=21  Identities=33%  Similarity=0.885  Sum_probs=14.6

Q ss_pred             ceecccccccccChHHHHHHH
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHM   34 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~   34 (86)
                      ||.|+.|...|.+...|+.|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            567777777777777776665

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.72  E-value=1e-05  Score=28.77  Aligned_cols=25  Identities=36%  Similarity=0.720  Sum_probs=16.9

Q ss_pred             ccCCCCccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|..|++.|.+..-+-+|+...|+
T Consensus         2 f~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           2 YPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             EECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             cccccccchhhHHHHHHHHHHHHhc
Confidence            6777777777777777776654443

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.71  E-value=3e-05  Score=26.82  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=15.0

Q ss_pred             ccCCC--CccccCChhHHHHHHHHh
Q psy4268          44 FPCTL--CSYATKRKTSLASHYYRK   66 (86)
Q Consensus        44 ~~c~~--c~~~f~~~~~l~~h~~~~   66 (86)
                      |.|..  |++.|...+.|.+|.+.|
T Consensus         4 y~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           4 YECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             ccCCccCccccccCHHHHhhhhhcc
Confidence            66654  667777777777766554

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.2e-05  Score=26.88  Aligned_cols=26  Identities=35%  Similarity=0.731  Sum_probs=18.8

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      |+|..|.....+.++|..|++.-+++
T Consensus         3 FkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           3 FKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             cccceecccccCcchHHHHHHHHccC
Confidence            77777777777777777777666553

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=4.7e-05  Score=26.34  Aligned_cols=25  Identities=24%  Similarity=0.558  Sum_probs=13.1

Q ss_pred             ccCCCCccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|..|...|.+.-.|..|+..|+|
T Consensus         5 ftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           5 FTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             EECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             EEeHHHHHHHHHHHhheeeeecccC
Confidence            4555555555555555555544444

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.63  E-value=4.7e-05  Score=26.31  Aligned_cols=25  Identities=40%  Similarity=0.703  Sum_probs=22.3

Q ss_pred             Cceeccc--ccccccChHHHHHHHHHh
Q psy4268          13 KRYLCDS--CDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        13 ~~~~c~~--c~~~~~~~~~l~~h~~~~   37 (86)
                      .||.|..  |++.|+..+.|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5788886  999999999999999876

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=8.4e-05  Score=25.84  Aligned_cols=28  Identities=21%  Similarity=0.585  Sum_probs=24.4

Q ss_pred             CCCccCCCCccccCChhHHHHHHHHhccC
Q psy4268          41 LPAFPCTLCSYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        41 ~~~~~c~~c~~~f~~~~~l~~h~~~~~~~   69 (86)
                      +| |.|..|......+++|..|+++-++.
T Consensus         1 kp-y~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KT-YQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CC-CCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CC-ccccccccccccchhhhhhhhccccc
Confidence            46 99999999999999999999887754

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=9.7e-05  Score=25.52  Aligned_cols=29  Identities=31%  Similarity=0.693  Sum_probs=25.9

Q ss_pred             CCceecccccccccChHHHHHHHHHhhCC
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      +.-|.|+.|...|...-.|..|+.+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            45689999999999999999999999874

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.52  E-value=6.4e-05  Score=26.07  Aligned_cols=28  Identities=25%  Similarity=0.646  Sum_probs=24.4

Q ss_pred             Cceeccc--ccccccChHHHHHHHHHhhCC
Q psy4268          13 KRYLCDS--CDRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        13 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   40 (86)
                      +||.|..  |.+.|.....|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4778876  999999999999999989874

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.0001  Score=25.49  Aligned_cols=23  Identities=35%  Similarity=0.751  Sum_probs=20.9

Q ss_pred             ccCCCCccccCChhHHHHHHHHh
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~   66 (86)
                      |.|..|...|...-+|.+|++.-
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSS
T ss_pred             cccceeeeeEeeccchhHhhhhh
Confidence            89999999999999999998653

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5e-05  Score=26.96  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             CCCccCCC--CccccCChhHHHHHH-HHhc
Q psy4268          41 LPAFPCTL--CSYATKRKTSLASHY-YRKH   67 (86)
Q Consensus        41 ~~~~~c~~--c~~~f~~~~~l~~h~-~~~~   67 (86)
                      +| |.|..  |.+.|...+...+|+ ++|.
T Consensus         1 kP-Y~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KP-YMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CC-EECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CC-ccccCCChhhhhcchhhhhhhcccccc
Confidence            35 88876  999999999999997 5554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00029  Score=26.30  Aligned_cols=26  Identities=27%  Similarity=0.723  Sum_probs=14.6

Q ss_pred             CCceeccc--ccccccChHHHHHHHHHh
Q psy4268          12 EKRYLCDS--CDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        12 ~~~~~c~~--c~~~~~~~~~l~~h~~~~   37 (86)
                      +|||.|..  |+..|.....|..|..-|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            45666643  556666665555555444

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00017  Score=24.50  Aligned_cols=21  Identities=24%  Similarity=0.659  Sum_probs=12.0

Q ss_pred             ceecccccccccChHHHHHHH
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHM   34 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~   34 (86)
                      ||.|..||+.+..+++|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            355556666666666555554

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00019  Score=23.79  Aligned_cols=22  Identities=36%  Similarity=0.721  Sum_probs=19.8

Q ss_pred             CCccCCCCccccCChhHHHHHHH
Q psy4268          42 PAFPCTLCSYATKRKTSLASHYY   64 (86)
Q Consensus        42 ~~~~c~~c~~~f~~~~~l~~h~~   64 (86)
                      | |+|..|...|-+...|+.|+-
T Consensus         2 p-ykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 P-YKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             S-EECSSSCCEESSHHHHHHHHH
T ss_pred             C-CcccHHHHHHHHHHHHHHHHH
Confidence            5 899999999999999999873

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.98  E-value=0.00033  Score=24.79  Aligned_cols=23  Identities=35%  Similarity=0.777  Sum_probs=20.9

Q ss_pred             ceecccccccccChHHHHHHHHH
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNY   36 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~   36 (86)
                      ||.|.+|++.|....-+.+|+..
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            68999999999999999999864

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00042  Score=25.26  Aligned_cols=20  Identities=25%  Similarity=0.346  Sum_probs=15.3

Q ss_pred             cccccChHHHHHHHHHhhCC
Q psy4268          21 DRTYSNRSSLKRHMNYECGK   40 (86)
Q Consensus        21 ~~~~~~~~~l~~h~~~~~~~   40 (86)
                      ++.|.....|..|++.|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            45788888888888888774

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00083  Score=23.20  Aligned_cols=25  Identities=24%  Similarity=0.513  Sum_probs=21.9

Q ss_pred             CceecccccccccChHHHHHHHHHh
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      +||+|..|.-.-.+.++|..|++.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            5899999998889999999998753

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.87  E-value=0.0012  Score=25.71  Aligned_cols=32  Identities=22%  Similarity=0.542  Sum_probs=24.5

Q ss_pred             CCCCccCCCCccccCChhHHHHHHHHhccCCCC
Q psy4268          40 KLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG   72 (86)
Q Consensus        40 ~~~~~~c~~c~~~f~~~~~l~~h~~~~~~~~~~   72 (86)
                      +.| ..|..|+....++.+|.+|....|-.+++
T Consensus        22 ~qp-atcpic~avirqsrnlrrhlel~hf~kpg   53 (54)
T d1yuja_          22 EQP-ATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             SCC-EECTTTCCEESSHHHHHHHHHHHTSCSCC
T ss_pred             cCC-CCCchHHHHHHHHHHHHHHHHHHhhccCC
Confidence            356 67888888888888888888777766654

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00053  Score=24.79  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=19.2

Q ss_pred             ccCCCCccccCChhHHHHHHHHhcc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHV   68 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~   68 (86)
                      |.|..|++.|.+...+.+|-..-.|
T Consensus         5 fvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeecccccchhcchHHHHHhhhcCC
Confidence            7888899999888888877654444

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0011  Score=24.71  Aligned_cols=27  Identities=30%  Similarity=0.493  Sum_probs=23.3

Q ss_pred             CCCCccCC--CCccccCChhHHHHHHHHhc
Q psy4268          40 KLPAFPCT--LCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        40 ~~~~~~c~--~c~~~f~~~~~l~~h~~~~~   67 (86)
                      .+| |.|.  -|+..|.....|..|...|.
T Consensus         4 dkP-F~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKP-FLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCC-EECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCc-eecCCCCccccccchHHHHHhhhhhe
Confidence            578 9995  49999999999999987775

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0026  Score=24.86  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=19.8

Q ss_pred             ccCCCCccccCChhHHHHHHHHhccCC
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKHVGE   70 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~~~~   70 (86)
                      |.|..|+|.|.....|.+|. ..||..
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HE-AQHG~t   32 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHE-AQHGVT   32 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHH-HHHTTT
T ss_pred             eeccccccccCCHHHHhHhH-HhcCcc
Confidence            77888889898888888886 444443

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00088  Score=22.82  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=15.6

Q ss_pred             ceecccccccccChHHHHHHHHHh
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      |-+|..|.++.+....|..|.++|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            345666766666767766666655

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.66  E-value=0.002  Score=22.55  Aligned_cols=26  Identities=31%  Similarity=0.791  Sum_probs=15.9

Q ss_pred             ceeccc--ccccccChHHHHHHHHHhhC
Q psy4268          14 RYLCDS--CDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus        14 ~~~c~~--c~~~~~~~~~l~~h~~~~~~   39 (86)
                      .|.|+.  |+..|...+.|..|.-.|+|
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcC
Confidence            455554  66666666666666666655

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0021  Score=23.37  Aligned_cols=20  Identities=20%  Similarity=0.052  Sum_probs=17.5

Q ss_pred             ccccCChhHHHHHHHHhccC
Q psy4268          50 SYATKRKTSLASHYYRKHVG   69 (86)
Q Consensus        50 ~~~f~~~~~l~~h~~~~~~~   69 (86)
                      ++.|.....|..|++.|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            45689999999999999986

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.12  E-value=0.0023  Score=22.82  Aligned_cols=23  Identities=35%  Similarity=0.846  Sum_probs=18.7

Q ss_pred             ceecccccccccChHHHHHHHHH
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNY   36 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~   36 (86)
                      .|.|..||-.|++.+.|..|+..
T Consensus         8 rf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ceeccccceeecChhHHHhhhhe
Confidence            47888899999998888888753

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.06  E-value=0.0043  Score=20.48  Aligned_cols=22  Identities=27%  Similarity=0.674  Sum_probs=14.6

Q ss_pred             ccCCCCccccCChhHHHHHHHH
Q psy4268          44 FPCTLCSYATKRKTSLASHYYR   65 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~   65 (86)
                      |.|+.|-+.|.+..++..|.+.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            5667777777777776666543

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0042  Score=24.23  Aligned_cols=26  Identities=15%  Similarity=0.428  Sum_probs=22.7

Q ss_pred             ceecccccccccChHHHHHHHHHhhC
Q psy4268          14 RYLCDSCDRTYSNRSSLKRHMNYECG   39 (86)
Q Consensus        14 ~~~c~~c~~~~~~~~~l~~h~~~~~~   39 (86)
                      -+.|-.|++.|.....|..|...|-.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeeccccccccCCHHHHhHhHHhcCc
Confidence            57899999999999999999887643

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.45  E-value=0.01  Score=19.88  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=15.6

Q ss_pred             CCCccccCChhHHHHHHHHhc
Q psy4268          47 TLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        47 ~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      ..|++.|.....|..|+-.|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            348888888888888876654

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0049  Score=25.73  Aligned_cols=43  Identities=16%  Similarity=0.477  Sum_probs=28.5

Q ss_pred             cCCCCCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCcccc
Q psy4268           7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYAT   53 (86)
Q Consensus         7 ~~h~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f   53 (86)
                      +.-.....|.|..|++.|+....+..   ....... |.|..|+-..
T Consensus         7 rd~~~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~-F~C~~C~~el   49 (62)
T d1vd4a_           7 RDSTNRASFKCPVCSSTFTDLEANQL---FDPMTGT-FRCTFCHTEV   49 (62)
T ss_dssp             SSCCSSSEEECSSSCCEEEHHHHHHH---EETTTTE-EBCSSSCCBC
T ss_pred             hccccCCceECCCCCCCcchhhHHHh---cCcCCCe-EEecCCCCEE
Confidence            34455678999999999987665432   2222234 9999997543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.013  Score=19.86  Aligned_cols=19  Identities=11%  Similarity=0.280  Sum_probs=15.0

Q ss_pred             CCccccCChhHHHHHHHHh
Q psy4268          48 LCSYATKRKTSLASHYYRK   66 (86)
Q Consensus        48 ~c~~~f~~~~~l~~h~~~~   66 (86)
                      .|.+.|...+.+.+|...|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3889999999998886444

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.021  Score=19.23  Aligned_cols=22  Identities=32%  Similarity=0.683  Sum_probs=15.5

Q ss_pred             ccCCCCccccCChhHHHHHHHH
Q psy4268          44 FPCTLCSYATKRKTSLASHYYR   65 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~   65 (86)
                      |.|+.|+-...+.+.|..|.+.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            6677777777777777777654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.0042  Score=26.36  Aligned_cols=21  Identities=24%  Similarity=0.475  Sum_probs=16.9

Q ss_pred             ccCCCCccccCChhHHHHHHH
Q psy4268          44 FPCTLCSYATKRKTSLASHYY   64 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~   64 (86)
                      |-|..|++.|.+...|..|.+
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            678888888888888887763

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.58  E-value=0.014  Score=21.03  Aligned_cols=24  Identities=38%  Similarity=0.778  Sum_probs=14.5

Q ss_pred             CCceecccccccccChHHHHHHHH
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMN   35 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~   35 (86)
                      +--|.|.+|.+.+...+++-+|-.
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHH
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHH
Confidence            335666666666666666666543

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.03  Score=19.10  Aligned_cols=20  Identities=20%  Similarity=0.526  Sum_probs=13.6

Q ss_pred             ccCCCCccccCChhHHHHHH
Q psy4268          44 FPCTLCSYATKRKTSLASHY   63 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~   63 (86)
                      |.|..||+...+...+..|.
T Consensus         3 ftc~hcgkqlks~~gmkyhv   22 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHV   22 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEE
Confidence            66777777777766666664

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=94.41  E-value=0.012  Score=21.73  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             CCCceecccccccccChHHHHHHHHHhhCCCCCccCCCCcc
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSY   51 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~   51 (86)
                      .++-|.|.+||..             +.|..| -.|+.|+.
T Consensus         2 ~~~~~vC~vCGyi-------------~~g~~P-e~CPvCg~   28 (36)
T d1yuza2           2 DDKFHLCPICGYI-------------HKGEDF-EKCPICFR   28 (36)
T ss_dssp             SCCEEECSSSCCE-------------EESSCC-SBCTTTCC
T ss_pred             CCCEEECCCCCCE-------------eeCCCC-CcCCCCCC
Confidence            3567899999864             345556 78999974

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.0062  Score=25.81  Aligned_cols=26  Identities=27%  Similarity=0.531  Sum_probs=22.4

Q ss_pred             CCCceecccccccccChHHHHHHHHH
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHMNY   36 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~~~   36 (86)
                      |...|-|..|++.|.+...|..|.++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            45568999999999999999998764

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.81  E-value=0.065  Score=20.70  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=26.2

Q ss_pred             CCCceecccccccccChHHHHHHHHHhhCCCC
Q psy4268          11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLP   42 (86)
Q Consensus        11 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   42 (86)
                      .+.|..|.+|+....++.+|.+|.....-.+|
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            57889999999999999999999876544433

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.31  E-value=0.023  Score=21.07  Aligned_cols=26  Identities=31%  Similarity=0.717  Sum_probs=18.8

Q ss_pred             CCceecccccccccChHHHHHHHHHhhCCCCCccCCCCcc
Q psy4268          12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSY   51 (86)
Q Consensus        12 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~   51 (86)
                      ++-|.|.+||..+             .|..| ..|+.|+.
T Consensus         3 ~~~~~C~vCG~i~-------------~g~~P-~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICGYTA-------------VDEAP-EYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTCCEE-------------ESCCC-SBCTTTCC
T ss_pred             CcEEECCCCCCEe-------------cCCCC-CcCCCCCC
Confidence            4568999998643             45566 78999874

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.11  Score=21.55  Aligned_cols=26  Identities=27%  Similarity=0.649  Sum_probs=14.9

Q ss_pred             CceecccccccccChHHHHHHHHHhh
Q psy4268          13 KRYLCDSCDRTYSNRSSLKRHMNYEC   38 (86)
Q Consensus        13 ~~~~c~~c~~~~~~~~~l~~h~~~~~   38 (86)
                      .-|.|..|...|-....|..|...|.
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhcc
Confidence            34666666666666666666655443

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.057  Score=19.54  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             ccCCCCccccCChhHHHHHHHHhc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      ..|..|-+.|..+.++.+|+.-.+
T Consensus         4 ltclecmrtfkssfsiwrhqvevh   27 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVEVH   27 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHHTS
T ss_pred             ccHHHHHHHHHHHHHHHHhhheec
Confidence            578999999999999999875444

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=91.41  E-value=0.025  Score=21.01  Aligned_cols=32  Identities=13%  Similarity=0.073  Sum_probs=21.0

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCC
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKR   55 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~   55 (86)
                      +.|..||..|..        .+...... -.|..||..+.+
T Consensus         3 ~vc~~cG~~Yh~--------~~~pPk~~-g~CD~cg~~L~q   34 (37)
T d2ak3a2           3 WIHPGSGRVYNI--------EFNPPKTM-GIDDLTGEPLVQ   34 (37)
T ss_dssp             EEETTTTEEEET--------TTBCCSST-TBCTTTCCBCBC
T ss_pred             eeeCCcCChhhh--------ccCCcccc-CCccCCCCcCEe
Confidence            578888887733        33445555 688888866554

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.11  Score=18.67  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=17.2

Q ss_pred             ccCCCCccccCChhHHHHHHH
Q psy4268          44 FPCTLCSYATKRKTSLASHYY   64 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~   64 (86)
                      |.|+.|.+-..+...+.+|+.
T Consensus         8 yiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           8 YLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             EECSSSCCEESCHHHHHHHHH
T ss_pred             eeehhhhhhhCCHHHHHHHHH
Confidence            788888888888888888864

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.13  E-value=0.16  Score=17.19  Aligned_cols=24  Identities=29%  Similarity=0.661  Sum_probs=17.5

Q ss_pred             ccCC--CCccccCChhHHHHHHHHhc
Q psy4268          44 FPCT--LCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        44 ~~c~--~c~~~f~~~~~l~~h~~~~~   67 (86)
                      |.|.  .|.-.|....++.+|..+-+
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnrfh   28 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNRFH   28 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcceEEeehHHHHHHHhhhc
Confidence            6664  38888888888888875543

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.93  E-value=0.21  Score=18.05  Aligned_cols=23  Identities=17%  Similarity=0.521  Sum_probs=18.0

Q ss_pred             eecccccccccChHHHHHHHHHh
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYE   37 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~   37 (86)
                      --|..|.-.|.....+..|....
T Consensus         9 rYC~~CDI~Fn~~~T~~aHKk~Y   31 (36)
T d1fu9a_           9 KYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHHHHT
T ss_pred             hHHhhCCceehhHHHHHHHHHhc
Confidence            46788888899888888887643

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.19  E-value=0.074  Score=19.77  Aligned_cols=32  Identities=13%  Similarity=0.133  Sum_probs=20.1

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCccccCC
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKR   55 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f~~   55 (86)
                      ..|..||..|..        .+...... -.|..|+..+.+
T Consensus         3 r~C~~cG~~Yh~--------~~~ppk~~-g~CD~cg~~L~q   34 (38)
T d1akya2           3 LIHPASGRSYHK--------IFNPPKED-MKDDVTGEALVQ   34 (38)
T ss_dssp             EECTTTCCEEET--------TTBCCSST-TBCTTTCCBCBC
T ss_pred             cCCcCccchhhh--------hccCcCcC-CccCCCCCEeee
Confidence            568888887733        23344445 578888865544

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.63  E-value=0.21  Score=19.33  Aligned_cols=20  Identities=35%  Similarity=0.690  Sum_probs=13.9

Q ss_pred             eecccccccccChHHHHHHH
Q psy4268          15 YLCDSCDRTYSNRSSLKRHM   34 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~   34 (86)
                      -.|..|+..|+....++.|.
T Consensus         7 ~eC~lC~vKYs~~~SvrdHi   26 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHI   26 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHH
T ss_pred             ccCcccceeeeeecchHhhh
Confidence            46777777777777766665

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.17  E-value=0.077  Score=19.34  Aligned_cols=30  Identities=23%  Similarity=0.482  Sum_probs=18.8

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCcccc
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYAT   53 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f   53 (86)
                      +.|..|+..|..        ........ -.|..||...
T Consensus         3 r~C~~CG~~Yh~--------~~~pPk~~-g~CD~cG~~L   32 (35)
T d1zina2           3 RICRNCGATYHL--------IFHPPAKP-GVCDKCGGEL   32 (35)
T ss_dssp             EEETTTCCEEET--------TTBCCSST-TBCTTTCCBE
T ss_pred             cCCcCcCchhcc--------ccCCCCCC-CcCCCCCCCc
Confidence            567888877643        23344555 6788887543

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.97  E-value=0.36  Score=16.24  Aligned_cols=16  Identities=19%  Similarity=0.285  Sum_probs=8.9

Q ss_pred             CccccCChhHHHHHHH
Q psy4268          49 CSYATKRKTSLASHYY   64 (86)
Q Consensus        49 c~~~f~~~~~l~~h~~   64 (86)
                      |++.|.....|.-|.+
T Consensus         8 c~kifsnrqylnhh~k   23 (30)
T d2dlka1           8 CGRIFSNRQYLNHHKK   23 (30)
T ss_dssp             TCCEESSHHHHHHHHH
T ss_pred             chhhhccHHHHHhHHH
Confidence            5566665555555543

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=83.56  E-value=0.1  Score=19.00  Aligned_cols=30  Identities=13%  Similarity=0.291  Sum_probs=18.4

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCcccc
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYAT   53 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f   53 (86)
                      +.|..|+..|..        .+....+. -.|..|+...
T Consensus         3 ~~C~~CG~~Yh~--------~~~pPk~~-g~CD~cg~~L   32 (35)
T d1s3ga2           3 RICKVCGTSYHL--------LFNPPQVE-GKCDKDGGEL   32 (35)
T ss_dssp             EEETTTCCEEET--------TTBCCSBT-TBCTTTCCBE
T ss_pred             cCCcCcCchhcc--------ccCCCCCC-CccCCCCCCc
Confidence            567788877743        23344455 6788887543

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=83.39  E-value=0.14  Score=18.58  Aligned_cols=30  Identities=10%  Similarity=0.051  Sum_probs=18.2

Q ss_pred             eecccccccccChHHHHHHHHHhhCCCCCccCCCCcccc
Q psy4268          15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYAT   53 (86)
Q Consensus        15 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~f   53 (86)
                      ..|..||..|..        ......+. -.|..||...
T Consensus         3 r~c~~cG~~Yh~--------~~~PPk~~-g~CD~cg~~L   32 (35)
T d1e4va2           3 RVHAPSGRVYHV--------KFNPPKVE-GKDDVTGEEL   32 (35)
T ss_dssp             EEETTTTEEEET--------TTBCCSST-TBCTTTCCBC
T ss_pred             cCCcCcCChhhh--------ccCccccC-CcccCCCCEe
Confidence            467778877633        33344455 6788887543

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=82.78  E-value=0.28  Score=24.47  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=17.0

Q ss_pred             ccCCCCccccCChhHHHHHHHHhc
Q psy4268          44 FPCTLCSYATKRKTSLASHYYRKH   67 (86)
Q Consensus        44 ~~c~~c~~~f~~~~~l~~h~~~~~   67 (86)
                      |+|..||+ +..-.++..|++.|.
T Consensus       147 YKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         147 YKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             EECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             eehhhcCc-eecHHHHHHHHHHcC
Confidence            57999987 455667899986553

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=81.46  E-value=0.49  Score=21.59  Aligned_cols=9  Identities=22%  Similarity=0.885  Sum_probs=5.2

Q ss_pred             cCCCCcccc
Q psy4268          45 PCTLCSYAT   53 (86)
Q Consensus        45 ~c~~c~~~f   53 (86)
                      .|..||..|
T Consensus        69 ~CrkCGfvF   77 (105)
T d2gmga1          69 QCRKCGFVF   77 (105)
T ss_dssp             BBTTTCCBC
T ss_pred             hhhhcCCee
Confidence            455566555