Psyllid ID: psy4279

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKAS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEcccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEccccccccccEEEEEEEccccccccccEccccccccccccccEEccccccccccEEEEcccccEccEccccEEccHHHcccccccccHHEcc
Coil and Loop (DISEMBL)
MKKNKQKELqdlgrdppaqcsagpvgddlfhwqatimgppdspyqggvffltihfptdypfkppkppkvsieyplkqpkvkvsrkyplklpkvafttriyhpninsngsiCLDIlrsqwspaltiskas
Flexible Loop (DISEMBL)
MKKNKQKELqdlgrdppaqcSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSieyplkqpkvkvsrkyplkLPKVAFttriyhpninsNGSICLDILRSqwspaltiskas
Low Complexity Region (SEG)
MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYpfkppkppkVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKAS
Disordered region (IsUnstruct)
************************VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF*********IEYPL**PKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPAL******
Disordered Region (DISOPRED)
MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKAS
Disordered Region (DISEMBL)
***************PPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKAS
Disordered Region (DISPRO)
MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKAS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
P35129	147	Ubiquitin-conjugating enz	yes	N/A	0.767	0.673	0.753	7e-48
P25867	147	Ubiquitin-conjugating enz	yes	N/A	0.767	0.673	0.753	1e-47
P62840	147	Ubiquitin-conjugating enz	N/A	N/A	0.767	0.673	0.722	1e-45
P62839	147	Ubiquitin-conjugating enz	yes	N/A	0.767	0.673	0.722	1e-45
P62838	147	Ubiquitin-conjugating enz	yes	N/A	0.767	0.673	0.722	1e-45
P62837	147	Ubiquitin-conjugating enz	yes	N/A	0.767	0.673	0.722	1e-45
Q1RMX2	147	Ubiquitin-conjugating enz	yes	N/A	0.767	0.673	0.722	1e-45
Q06AA9	147	Ubiquitin-conjugating enz	yes	N/A	0.767	0.673	0.722	2e-45
P61078	147	Ubiquitin-conjugating enz	yes	N/A	0.767	0.673	0.722	2e-45
Q5R4V7	147	Ubiquitin-conjugating enz	yes	N/A	0.767	0.673	0.722	2e-45

>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1

 Score =  188 bits (478), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 96/126 (76%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K  QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins.
Caenorhabditis elegans (taxid: 6239)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=2 SV=1

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 95/126 (75%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins. Required for proper telomere behavior during cell divisions and possibly for ubiquitination of proteins involved in postmeiotic stages of spermatogenesis. Deletion mutations are lethal in homozygotes.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62840|UB2D2_XENLA Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 92/126 (73%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=1 SV=1

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 92/126 (73%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection. Essential for viral activation of IRF3 (By similarity). Mediates ubiquitination of PEX5.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62838|UB2D2_MOUSE Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 92/126 (73%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates ubiquitination of PEX5 and autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection. Essential for viral activation of IRF3.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62837|UB2D2_HUMAN Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 92/126 (73%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates ubiquitination of PEX5 and autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection. Essential for viral activation of IRF3.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q1RMX2|UB2D2_BOVIN Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 92/126 (73%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates ubiquitination of PEX5 and autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection. Essential for viral activation of IRF3.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q06AA9|UB2D2_PIG Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 92/126 (73%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates ubiquitination of PEX5 and autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection. Essential for viral activation of IRF3.

Sus scrofa (taxid: 9823)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 92/126 (73%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'-, as well as 'Lys-48'-linked polyubiquitination. Cooperates with the E2 CDC34 and the SCF(FBXW11) E3 ligase complex for the polyubiquitination of NFKBIA leading to its subsequent proteasomal degradation. Acts as an initiator E2, priming the phosphorylated NFKBIA target at positions 'Lys-21' and/or 'Lys-22' with a monoubiquitin. Ubiquitin chain elongation is then performed by CDC34, building ubiquitin chains from the UBE2D3-primed NFKBIA-linked ubiquitin. Acts also as an initiator E2, in conjunction with RNF8, for the priming of PCNA. Monoubiquitination of PCNA, and its subsequent polyubiquitination, are essential events in the operation of the DNA damage tolerance (DDT) pathway that is activated after DNA damage caused by UV or chemical agents during S-phase. Associates with the BRCA1/BARD1 E3 ligase complex to perform ubiquitination at DNA damage sites following ionizing radiation leading to DNA repair. Targets DAPK3 for ubiquitination which influences promyelocytic leukemia protein nuclear body (PML-NB) formation in the nucleus. In conjunction with the MDM2 and TOPORS E3 ligases, functions ubiquitination of p53/TP53. Supports NRDP1-mediated ubiquitination and degradation of ERBB3 and of BRUCE which triggers apoptosis. In conjunction with the CBL E3 ligase, targets EGFR for polyubiquitination at the plasma membrane as well as during its internalization and transport on endosomes. In conjunction with the STUB1 E3 quality control E3 ligase, ubiquitinates unfolded proteins to catalyze their immediate destruction.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q5R4V7|UB2D3_PONAB Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 92/126 (73%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'-, as well as 'Lys-48'-linked polyubiquitination. Cooperates with the E2 CDC34 and the SCF(FBXW11) E3 ligase complex for the polyubiquitination of NFKBIA leading to its subsequent proteasomal degradation. Acts as an initiator E2, priming the phosphorylated NFKBIA target at positions 'Lys-21' and/or 'Lys-22' with a monoubiquitin. Ubiquitin chain elongation is then performed by CDC34, building ubiquitin chains from the UBE2D3-primed NFKBIA-linked ubiquitin. Acts also as an initiator E2, in conjunction with RNF8, for the priming of PCNA. Monoubiquitination of PCNA, and its subsequent polyubiquitination, are essential events in the operation of the DNA damage tolerance (DDT) pathway that is activated after DNA damage caused by UV or chemical agents during S-phase. Associates with the BRCA1/BARD1 E3 ligase complex to perform ubiquitination at DNA damage sites following ionizing radiation leading to DNA repair. Targets DAPK3 for ubiquitination which influences promyelocytic leukemia protein nuclear body (PML-NB) formation in the nucleus. In conjunction with the MDM2 and TOPORS E3 ligases, functions ubiquitination of p53/TP53. Supports NRDP1-mediated ubiquitination and degradation of ERBB3 and of BRUCE which triggers apoptosis. In conjunction with the CBL E3 ligase, targets EGFR for polyubiquitination at the plasma membrane as well as during its internalization and transport on endosomes. In conjunction with the STUB1 E3 quality control E3 ligase, ubiquitinates unfolded proteins to catalyze their immediate destruction.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
321449602	112	hypothetical protein DAPPUDRAFT_120690 [	0.775	0.892	0.755	3e-46
17541470	147	Protein LET-70 [Caenorhabditis elegans]	0.767	0.673	0.753	5e-46
62738886	150	Chain A, The 1.1a Crystallographic Struc	0.767	0.66	0.753	6e-46
393909430	115	ubiquitin-conjugating enzyme E2 2, varia	0.767	0.860	0.753	6e-46
324521519	147	Ubiquitin-conjugating enzyme E2 2 [Ascar	0.767	0.673	0.753	6e-46
87239726	147	putative ubiquitin conjugating enzyme 2	0.767	0.673	0.753	6e-46
318087206	147	putative ubiquitin-conjugating enzyme E2	0.767	0.673	0.753	7e-46
24646906	147	effete, isoform A [Drosophila melanogast	0.767	0.673	0.753	7e-46
383856822	147	PREDICTED: ubiquitin-conjugating enzyme	0.767	0.673	0.753	7e-46
260794733	147	hypothetical protein BRAFLDRAFT_285353 [	0.767	0.673	0.753	7e-46

>gi|321449602|gb|EFX61976.1| hypothetical protein DAPPUDRAFT_120690 [Daphnia pulex]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 97/127 (76%), Gaps = 27/127 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKAS 129
           LTISK+S
Sbjct: 97  LTISKSS 103

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17541470|ref|NP_502065.1| Protein LET-70 [Caenorhabditis elegans] gi|170589261|ref|XP_001899392.1| ubiquitin-conjugating enzyme ubc-2 [Brugia malayi] gi|268536276|ref|XP_002633273.1| C. briggsae CBR-LET-70 protein [Caenorhabditis briggsae] gi|308491730|ref|XP_003108056.1| CRE-LET-70 protein [Caenorhabditis remanei] gi|312071135|ref|XP_003138468.1| ubiquitin-conjugating enzyme ubc-2 [Loa loa] gi|464979|sp|P35129.1|UBC2_CAEEL RecName: Full=Ubiquitin-conjugating enzyme E2 2; AltName: Full=Lethal protein 70; AltName: Full=Ubiquitin carrier protein 2; AltName: Full=Ubiquitin-protein ligase 2 gi|3878673|emb|CAA92745.1| Protein LET-70 [Caenorhabditis elegans] gi|7327273|gb|AAB25489.2| ubiquitin-conjugating enzyme [Caenorhabditis elegans] gi|158593605|gb|EDP32200.1| ubiquitin-conjugating enzyme ubc-2, putative [Brugia malayi] gi|209489351|gb|ACI49123.1| hypothetical protein Cbre_JD14.011 [Caenorhabditis brenneri] gi|307766365|gb|EFO25599.1| ubiquitin-conjugating enzyme E2 2 [Loa loa] gi|308250003|gb|EFO93955.1| CRE-LET-70 protein [Caenorhabditis remanei] gi|341880340|gb|EGT36275.1| CBN-LET-70 protein [Caenorhabditis brenneri]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 96/126 (76%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K  QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|62738886|pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 96/126 (76%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K  QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDYPFK
Sbjct: 7   KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 67  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 99

Query: 123 LTISKA 128
           LTISK 
Sbjct: 100 LTISKV 105

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|393909430|gb|EJD75446.1| ubiquitin-conjugating enzyme E2 2, variant [Loa loa]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 96/126 (76%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K  QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKG 102

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|324521519|gb|ADY47871.1| Ubiquitin-conjugating enzyme E2 2 [Ascaris suum]

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 96/126 (76%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K  QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|87239726|emb|CAJ57642.1| putative ubiquitin conjugating enzyme 2 [Oesophagostomum dentatum]

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 96/126 (76%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K  QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Source: Oesophagostomum dentatum

Species: Oesophagostomum dentatum

Genus: Oesophagostomum

Family: Chabertiidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|318087206|gb|ADV40195.1| putative ubiquitin-conjugating enzyme E2-17 kDa [Latrodectus hesperus]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 95/126 (75%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Source: Latrodectus hesperus

Species: Latrodectus hesperus

Genus: Latrodectus

Family: Theridiidae

Order: Araneae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24646906|ref|NP_731941.1| effete, isoform A [Drosophila melanogaster] gi|187117170|ref|NP_001119686.1| effete [Acyrthosiphon pisum] gi|442619106|ref|NP_001262578.1| effete, isoform B [Drosophila melanogaster] gi|442619108|ref|NP_001262579.1| effete, isoform C [Drosophila melanogaster] gi|58381090|ref|XP_310998.2| AGAP000145-PA [Anopheles gambiae str. PEST] gi|91077526|ref|XP_970430.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (Protein effete) [Tribolium castaneum] gi|156550189|ref|XP_001605481.1| PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa-like [Nasonia vitripennis] gi|157134117|ref|XP_001663154.1| ubiquitin-conjugating enzyme E2 [Aedes aegypti] gi|194743322|ref|XP_001954149.1| GF18131 [Drosophila ananassae] gi|194900836|ref|XP_001979961.1| GG21088 [Drosophila erecta] gi|195061220|ref|XP_001995948.1| GH14086 [Drosophila grimshawi] gi|195113175|ref|XP_002001144.1| GI10619 [Drosophila mojavensis] gi|195143851|ref|XP_002012910.1| GL23670 [Drosophila persimilis] gi|195328929|ref|XP_002031164.1| GM25828 [Drosophila sechellia] gi|195390905|ref|XP_002054107.1| GJ22971 [Drosophila virilis] gi|195444200|ref|XP_002069759.1| GK11688 [Drosophila willistoni] gi|195501528|ref|XP_002097834.1| eff [Drosophila yakuba] gi|195570846|ref|XP_002103415.1| GD20402 [Drosophila simulans] gi|198451027|ref|XP_002137205.1| GA26693 [Drosophila pseudoobscura pseudoobscura] gi|136643|sp|P25867.1|UBCD1_DROME RecName: Full=Ubiquitin-conjugating enzyme E2-17 kDa; AltName: Full=Protein effete; AltName: Full=Ubiquitin carrier protein; AltName: Full=Ubiquitin-protein ligase gi|8783|emb|CAA44453.1| ubiquitin-conjugating enzyme [Drosophila melanogaster] gi|7299919|gb|AAF55093.1| effete, isoform A [Drosophila melanogaster] gi|16648156|gb|AAL25343.1| GH14739p [Drosophila melanogaster] gi|46561756|gb|AAT01083.1| putative ubiquitin-conjugating enzyme [Homalodisca vitripennis] gi|55243675|gb|EAA06420.3| AGAP000145-PA [Anopheles gambiae str. PEST] gi|89473748|gb|ABD72686.1| putative ubiquitin-conjugating enzyme [Acyrthosiphon pisum] gi|94468952|gb|ABF18325.1| ubiquitin-conjugating enzyme [Aedes aegypti] gi|108881406|gb|EAT45631.1| AAEL003103-PA [Aedes aegypti] gi|190627186|gb|EDV42710.1| GF18131 [Drosophila ananassae] gi|190651664|gb|EDV48919.1| GG21088 [Drosophila erecta] gi|193891740|gb|EDV90606.1| GH14086 [Drosophila grimshawi] gi|193917738|gb|EDW16605.1| GI10619 [Drosophila mojavensis] gi|194101853|gb|EDW23896.1| GL23670 [Drosophila persimilis] gi|194120107|gb|EDW42150.1| GM25828 [Drosophila sechellia] gi|194152193|gb|EDW67627.1| GJ22971 [Drosophila virilis] gi|194165844|gb|EDW80745.1| GK11688 [Drosophila willistoni] gi|194183935|gb|EDW97546.1| eff [Drosophila yakuba] gi|194199342|gb|EDX12918.1| GD20402 [Drosophila simulans] gi|198131302|gb|EDY67763.1| GA26693 [Drosophila pseudoobscura pseudoobscura] gi|220945198|gb|ACL85142.1| eff-PA [synthetic construct] gi|220955014|gb|ACL90050.1| eff-PA [synthetic construct] gi|239791033|dbj|BAH72034.1| ACYPI000078 [Acyrthosiphon pisum] gi|270002752|gb|EEZ99199.1| effete [Tribolium castaneum] gi|289743473|gb|ADD20484.1| ubiquitin protein ligase [Glossina morsitans morsitans] gi|332375666|gb|AEE62974.1| unknown [Dendroctonus ponderosae] gi|440217433|gb|AGB95959.1| effete, isoform B [Drosophila melanogaster] gi|440217434|gb|AGB95960.1| effete, isoform C [Drosophila melanogaster]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 95/126 (75%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856822|ref|XP_003703906.1| PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa-like [Megachile rotundata]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 95/126 (75%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260794733|ref|XP_002592362.1| hypothetical protein BRAFLDRAFT_285353 [Branchiostoma floridae] gi|229277580|gb|EEN48373.1| hypothetical protein BRAFLDRAFT_285353 [Branchiostoma floridae]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 96/126 (76%), Gaps = 27/126 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K  +KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK
Sbjct: 4   KRIKKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 64  P---------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
WB|WBGene00002344	147	let-70 [Caenorhabditis elegans	0.759	0.666	0.744	1.9e-42
FB|FBgn0011217	147	eff "effete" [Drosophila melan	0.759	0.666	0.744	2.5e-42
ZFIN|ZDB-GENE-030131-2735	147	ube2d1b "ubiquitin-conjugating	0.759	0.666	0.72	9.6e-41
ZFIN|ZDB-GENE-030131-7384	147	ube2d2l "ubiquitin-conjugating	0.759	0.666	0.72	1.2e-40
UNIPROTKB|Q5ZL59	147	UBE2D3 "Uncharacterized protei	0.759	0.666	0.712	5.3e-40
UNIPROTKB|G3MXY4	147	LOC100849169 "Uncharacterized	0.728	0.639	0.727	5.3e-40
UNIPROTKB|Q1RMX2	147	UBE2D2 "Ubiquitin-conjugating	0.759	0.666	0.712	5.3e-40
UNIPROTKB|J9NS22	147	UBE2D2 "Uncharacterized protei	0.759	0.666	0.712	5.3e-40
UNIPROTKB|C9J9H9	122	UBE2D4 "Ubiquitin-conjugating	0.759	0.803	0.712	5.3e-40
UNIPROTKB|P61077	147	UBE2D3 "Ubiquitin-conjugating	0.759	0.666	0.712	5.3e-40

WB|WBGene00002344 let-70 [Caenorhabditis elegans (taxid:6239)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 93/125 (74%), Positives = 94/125 (75%)

Query:     3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
             K  QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDY   
Sbjct:     4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY--- 60

Query:    63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                     P K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct:    61 ------------------------PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query:   123 LTISK 127
             LTISK
Sbjct:    97 LTISK 101

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0007126 "meiosis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

FB|FBgn0011217 eff "effete" [Drosophila melanogaster (taxid:7227)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 93/125 (74%), Positives = 93/125 (74%)

Query:     3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
             K   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDY   
Sbjct:     4 KRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDY--- 60

Query:    63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                     P K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct:    61 ------------------------PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query:   123 LTISK 127
             LTISK
Sbjct:    97 LTISK 101

GO:0004842 "ubiquitin-protein ligase activity" evidence=IGI;ISS;NAS;TAS

GO:0016567 "protein ubiquitination" evidence=ISS;IDA;TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IGI

GO:0007286 "spermatid development" evidence=IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0051276 "chromosome organization" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0048477 "oogenesis" evidence=TAS

GO:0001751 "compound eye photoreceptor cell differentiation" evidence=IMP

GO:0045676 "regulation of R7 cell differentiation" evidence=IGI

GO:0016322 "neuron remodeling" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0048132 "female germ-line stem cell division" evidence=IMP

GO:0008054 "cyclin catabolic process" evidence=IMP

GO:0031647 "regulation of protein stability" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-030131-2735 ube2d1b "ubiquitin-conjugating enzyme E2D 1b" [Danio rerio (taxid:7955)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 90/125 (72%), Positives = 92/125 (73%)

Query:     3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
             K  QKELQDL RDPPAQCSAGPVGDDLFHWQATIMGP DSPYQGGVFFLTIHFPTDY   
Sbjct:     4 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDY--- 60

Query:    63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                     P K PKVAFTT+IYHPNINSNGSICLDILRSQWSPA
Sbjct:    61 ------------------------PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPA 96

Query:   123 LTISK 127
             LT+SK
Sbjct:    97 LTVSK 101

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-7384 ube2d2l "ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like" [Danio rerio (taxid:7955)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 90/125 (72%), Positives = 91/125 (72%)

Query:     3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
             K   KEL DLGRDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDY   
Sbjct:     4 KRIHKELHDLGRDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY--- 60

Query:    63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                     P K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct:    61 ------------------------PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query:   123 LTISK 127
             LTISK
Sbjct:    97 LTISK 101

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|Q5ZL59 UBE2D3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 89/125 (71%), Positives = 90/125 (72%)

Query:     3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
             K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDY   
Sbjct:     4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY--- 60

Query:    63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                     P K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct:    61 ------------------------PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query:   123 LTISK 127
             LTISK
Sbjct:    97 LTISK 101

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

UNIPROTKB|G3MXY4 LOC100849169 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 88/121 (72%), Positives = 90/121 (74%)

Query:     7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
             KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDY       
Sbjct:     8 KELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY------- 60

Query:    67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTIS 126
                                 P KLPKVAFTTRIYHPNINSNGSICL+ILRSQWSPALTIS
Sbjct:    61 --------------------PFKLPKVAFTTRIYHPNINSNGSICLNILRSQWSPALTIS 100

Query:   127 K 127
             K
Sbjct:   101 K 101

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|Q1RMX2 UBE2D2 "Ubiquitin-conjugating enzyme E2 D2" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 89/125 (71%), Positives = 90/125 (72%)

Query:     3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
             K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDY   
Sbjct:     4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY--- 60

Query:    63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                     P K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct:    61 ------------------------PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query:   123 LTISK 127
             LTISK
Sbjct:    97 LTISK 101

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9NS22 UBE2D2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 89/125 (71%), Positives = 90/125 (72%)

Query:     3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
             K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDY   
Sbjct:     4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY--- 60

Query:    63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                     P K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct:    61 ------------------------PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query:   123 LTISK 127
             LTISK
Sbjct:    97 LTISK 101

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|C9J9H9 UBE2D4 "Ubiquitin-conjugating enzyme E2 D4" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 89/125 (71%), Positives = 91/125 (72%)

Query:     3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
             K  QKEL DL RDPPAQCSAGPVGDDLFHWQATIMGP DSPYQGGVFFLTIHFPTDY   
Sbjct:     4 KRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY--- 60

Query:    63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                     P K PKVAFTT+IYHPNINSNGSICLDILRSQWSPA
Sbjct:    61 ------------------------PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPA 96

Query:   123 LTISK 127
             LT+SK
Sbjct:    97 LTVSK 101

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|P61077 UBE2D3 "Ubiquitin-conjugating enzyme E2 D3" [Homo sapiens (taxid:9606)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 89/125 (71%), Positives = 90/125 (72%)

Query:     3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
             K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDY   
Sbjct:     4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY--- 60

Query:    63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                     P K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct:    61 ------------------------PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96

Query:   123 LTISK 127
             LTISK
Sbjct:    97 LTISK 101

GO:0005524 "ATP binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0030509 "BMP signaling pathway" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0033554 "cellular response to stress" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=TAS

GO:0071456 "cellular response to hypoxia" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P62837	UB2D2_HUMAN	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	yes	N/A
P46595	UBC4_SCHPO	6, ., 3, ., 2, ., 1, 9	0.6746	0.7674	0.6734	yes	N/A
P62839	UB2D2_RAT	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	yes	N/A
P62838	UB2D2_MOUSE	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	yes	N/A
Q5R4V7	UB2D3_PONAB	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	yes	N/A
A5PKP9	UB2D4_XENLA	6, ., 3, ., 2, ., 1, 9	0.7063	0.7674	0.6734	N/A	N/A
P35129	UBC2_CAEEL	6, ., 3, ., 2, ., 1, 9	0.7539	0.7674	0.6734	yes	N/A
Q9Y2X8	UB2D4_HUMAN	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	no	N/A
P62840	UB2D2_XENLA	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	N/A	N/A
Q8S920	UBC5A_ORYSJ	6, ., 3, ., 2, ., 1, 9	0.6190	0.7674	0.6734	yes	N/A
P61077	UB2D3_HUMAN	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	yes	N/A
P61078	UB2D3_RAT	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	yes	N/A
P61079	UB2D3_MOUSE	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	yes	N/A
P25867	UBCD1_DROME	6, ., 3, ., 2, ., 1, 9	0.7539	0.7674	0.6734	yes	N/A
P15732	UBC5_YEAST	6, ., 3, ., 2, ., 1, 9	0.648	0.7596	0.6621	yes	N/A
Q3ZCF7	UB2D3_BOVIN	6, ., 3, ., 2, ., 1, 9	0.7142	0.7674	0.6734	yes	N/A
Q1RMX2	UB2D2_BOVIN	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	yes	N/A
Q06AA9	UB2D2_PIG	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	yes	N/A
Q4R5N4	UB2D3_MACFA	6, ., 3, ., 2, ., 1, 9	0.7222	0.7674	0.6734	N/A	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.946
3rd Layer	6.3.2	0.963

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	129
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	4e-45
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	7e-44
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	1e-43
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	5e-43
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	2e-36
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	9e-23

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  143 bits (363), Expect = 4e-45
 Identities = 59/124 (47%), Positives = 77/124 (62%), Gaps = 28/124 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            KEL+ L +DPP   SAGPV D +LFHW+ATI GPPD+PY+GG+F LT+ FP DYPFKP 
Sbjct: 11  LKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKP- 69

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALT 124
                                     PKV FTT+I+HPN++ +G++CLDIL+ +WSP  T
Sbjct: 70  --------------------------PKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYT 103

Query: 125 ISKA 128
           +   
Sbjct: 104 LETI 107

Length = 153

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  140 bits (354), Expect = 7e-44
 Identities = 61/123 (49%), Positives = 76/123 (61%), Gaps = 28/123 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QKEL++L +DPP   SA PV D+LF W+ TI+GP  +PY+GGVF L I FP DYPFKP  
Sbjct: 3   QKELKELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKP-- 60

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALT 124
                                    PKV FTT+IYHPN++ +G ICLDIL+ + WSPALT
Sbjct: 61  -------------------------PKVKFTTKIYHPNVDPSGEICLDILKDENWSPALT 95

Query: 125 ISK 127
           I +
Sbjct: 96  IEQ 98

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score =  139 bits (352), Expect = 1e-43
 Identities = 73/125 (58%), Positives = 83/125 (66%), Gaps = 27/125 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K  QKE +DL +DPP+ CSAGP  ++LF W A+I+GP DSPY GGVFFL+I FP DYPFK
Sbjct: 4   KRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFK 63

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           P                           PKV FTT+IYHPNINSNGSICLDILR QWSPA
Sbjct: 64  P---------------------------PKVQFTTKIYHPNINSNGSICLDILRDQWSPA 96

Query: 123 LTISK 127
           LT+SK
Sbjct: 97  LTVSK 101

Length = 147

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  137 bits (348), Expect = 5e-43
 Identities = 59/127 (46%), Positives = 73/127 (57%), Gaps = 28/127 (22%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K  QKEL+DL +DPP+  SA PV ++L  W  TI GPPD+PY+GG+F L I FP DYPFK
Sbjct: 2   KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFK 61

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSP 121
           P                           PKV F T+IYHPN++ NG ICL IL++  WSP
Sbjct: 62  P---------------------------PKVRFVTKIYHPNVDENGKICLSILKTHGWSP 94

Query: 122 ALTISKA 128
           A T+   
Sbjct: 95  AYTLRTV 101

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  121 bits (305), Expect = 2e-36
 Identities = 58/124 (46%), Positives = 74/124 (59%), Gaps = 29/124 (23%)

Query: 6   QKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            KEL++L +DPP   +A PV  ++L  W  TI+GPP +PY+GGVF LTI FP DYPFKP 
Sbjct: 3   LKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKP- 61

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPAL 123
                                     PKV F T+IYHPN++S+G ICLDIL+ + WSPAL
Sbjct: 62  --------------------------PKVKFITKIYHPNVDSSGEICLDILKQEKWSPAL 95

Query: 124 TISK 127
           T+  
Sbjct: 96  TLET 99

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 86.8 bits (215), Expect = 9e-23
 Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 27/123 (21%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           K  +KE Q+L  DPP    A P   +  H++  + GP  +PY+GG + L +  P  YP +
Sbjct: 5   KRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPME 64

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
           PPK                           V F T+IYHPNI+  G ICLDIL+ +WSPA
Sbjct: 65  PPK---------------------------VRFLTKIYHPNIDKLGRICLDILKDKWSPA 97

Query: 123 LTI 125
           L I
Sbjct: 98  LQI 100

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG0417|consensus	148		100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0419|consensus	152		100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
KOG0426|consensus	165		99.97
KOG0418|consensus	200		99.97
KOG0427|consensus	161		99.97
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.97
KOG0425|consensus	171		99.97
KOG0421|consensus	175		99.97
KOG0424|consensus	158		99.96
KOG0894|consensus	244		99.95
KOG0422|consensus	153		99.95
KOG0416|consensus	189		99.92
KOG0423|consensus	223		99.92
KOG0420|consensus	184		99.9
KOG0428|consensus	314		99.87
KOG0895|consensus	1101		99.6
KOG0895|consensus	1101		99.55
KOG0429|consensus	258		99.35
KOG0896|consensus	138		99.12
KOG0897|consensus	122		97.99
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	97.99
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.61
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	96.94
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.0
smart00591	107	RWD domain in RING finger and WD repeat containing	95.01
KOG2391|consensus	365		94.51
KOG3357|consensus	167		94.04
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	86.64

>KOG0417|consensus

Probab=100.00  E-value=1.6e-41  Score=249.18  Aligned_cols=101  Identities=78%  Similarity=1.398  Sum_probs=98.5

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.+||+||+++|++++++||++.++++|+++|+++|.||.|||||||.|++.|.||++||++||                
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PP----------------   65 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPP----------------   65 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCC----------------
Confidence            3579999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+||||||+++|.||+|+|+++|||++||++|
T Consensus        66 -----------kV~F~TkIyHPNI~~~G~IclDILk~~WsPAl~i~~V  102 (148)
T KOG0417|consen   66 -----------KVRFLTKIYHPNIDSNGRICLDILKDQWSPALTISKV  102 (148)
T ss_pred             -----------ceEeecccccCCcCccccchHHhhhccCChhhHHHHH
Confidence                       9999999999999999999999999999999999886

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-40  Score=244.61  Aligned_cols=100  Identities=60%  Similarity=1.217  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~-nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      .+||+||+++|++++++++++.|.++ |+++|++.|.||++||||||.|++.|+||++||++||                
T Consensus         7 ~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PP----------------   70 (153)
T COG5078           7 LKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPP----------------   70 (153)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCC----------------
Confidence            58999999999999999999999998 9999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+||||||+++|+||||+|+++|+|++||++|
T Consensus        71 -----------kv~F~t~i~HPNV~~~G~vCLdIL~~~WsP~~~l~sI  107 (153)
T COG5078          71 -----------KVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETI  107 (153)
T ss_pred             -----------eeeeccCCcCCCcCCCCCChhHHHhCCCCccccHHHH
Confidence                       9999999999999999999999999999999999986

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=2.1e-37  Score=229.61  Aligned_cols=101  Identities=46%  Similarity=0.910  Sum_probs=98.3

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      ++|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||                
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP----------------   66 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPP----------------   66 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCC----------------
Confidence            4699999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+++|.||+|+|+++|+|++||++|
T Consensus        67 -----------~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~ti~~i  103 (152)
T PTZ00390         67 -----------KVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTV  103 (152)
T ss_pred             -----------EEEEecCCeeceECCCCeEECccCcccCCCCCcHHHH
Confidence                       9999999999999999999999999999999999876

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=4.9e-37  Score=226.34  Aligned_cols=100  Identities=73%  Similarity=1.329  Sum_probs=97.8

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.+.++|+++|++.|.||++|||+||.|+++|.||++||++||                 
T Consensus         3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP-----------------   65 (147)
T PLN00172          3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPP-----------------   65 (147)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCC-----------------
Confidence            599999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|+++||||+++|.||+++|+++|+|++||++|
T Consensus        66 ----------~v~f~t~i~HPNv~~~G~iCl~il~~~W~p~~ti~~i  102 (147)
T PLN00172         66 ----------KVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKV  102 (147)
T ss_pred             ----------EEEEecCcccceECCCCEEEcccCcCCCCCcCcHHHH
Confidence                      9999999999999999999999999999999999886

>KOG0419|consensus

Probab=100.00  E-value=5.6e-37  Score=221.47  Aligned_cols=101  Identities=43%  Similarity=0.990  Sum_probs=98.5

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.|||++|+++|+++++.|+++.|.++|+++|.+.|+||++|||+||+|++.|+|+++||.+||                
T Consensus         5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP----------------   68 (152)
T KOG0419|consen    5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPP----------------   68 (152)
T ss_pred             HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCC----------------
Confidence            4689999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 .|+|.+.+||||||.+|.||+|+|+..|+|.|+|.+|
T Consensus        69 -----------~VrFvs~mFHPNvya~G~iClDiLqNrWsp~Ydva~I  105 (152)
T KOG0419|consen   69 -----------TVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVASI  105 (152)
T ss_pred             -----------eeEeeeeccCCCcCCCCcchHHHHhcCCCCchhHHHH
Confidence                       9999999999999999999999999999999999875

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=9.3e-34  Score=205.46  Aligned_cols=98  Identities=55%  Similarity=1.121  Sum_probs=89.7

Q ss_pred             HHHHHHHHhhcCCCCCeEEEEcCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccccc
Q psy4279           4 NKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKV   82 (129)
Q Consensus         4 RL~kEl~~l~~~~~~~~~~~p~~~-nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~~   82 (129)
                      ||+||+++|+++++.|+.+.+.++ |+.+|+++|.||++|||+||.|+|+|.||++||++||                  
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP------------------   62 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPP------------------   62 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--------------------
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccc------------------
Confidence            999999999999999999999997 9999999999999999999999999999999999999                  


Q ss_pred             ccccCCCCCeEEeeeccccceecCCCcEEeccCCC-CcccccCcccc
Q psy4279          83 SRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS-QWSPALTISKA  128 (129)
Q Consensus        83 ~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~-~Wsp~~ti~~v  128 (129)
                               +|+|.|+++||||+.+|.||+++|.. .|+|++||++|
T Consensus        63 ---------~v~f~t~i~HPni~~~G~icl~~l~~~~W~p~~~i~~i  100 (140)
T PF00179_consen   63 ---------KVRFLTPIFHPNIDENGRICLDILNPESWSPSYTIESI  100 (140)
T ss_dssp             ---------EEEESSS-SBTTB-TTSBBGHGGGTTTTC-TTSHHHHH
T ss_pred             ---------ccccccccccccccccccchhhhhhcccCCcccccccH
Confidence                     99999999999999999999999985 49999999875

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=6e-33  Score=201.63  Aligned_cols=99  Identities=60%  Similarity=1.189  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccccc
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKV   82 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~~   82 (129)
                      |||++|+++|++++++|+.+.+.++|+++|+++|.|+++|||+||.|+++|.||++||++||                  
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP------------------   63 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPP------------------   63 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCC------------------
Confidence            79999999999999999999999999999999999999999999999999999999999999                  


Q ss_pred             ccccCCCCCeEEeeeccccceecCCCcEEeccCCCC-cccccCcccc
Q psy4279          83 SRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKA  128 (129)
Q Consensus        83 ~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~-Wsp~~ti~~v  128 (129)
                               .|+|.++++||||+++|.||+++|..+ |+|++||++|
T Consensus        64 ---------~v~f~~~i~HpnV~~~G~icl~~l~~~~W~p~~~l~~i  101 (141)
T cd00195          64 ---------KVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTV  101 (141)
T ss_pred             ---------eEEEeCCcccCCCCCCCCCchhhcCCCCcCCcCcHHHH
Confidence                     999999999999999999999999877 9999999876

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0426|consensus

Probab=99.97  E-value=1.7e-32  Score=198.64  Aligned_cols=101  Identities=41%  Similarity=0.911  Sum_probs=96.0

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~-~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      +.|||++||++|..++++|+.+.|.. ||+++|.+.|.||++|||+||.|-.++.||.+||..||               
T Consensus         5 AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPP---------------   69 (165)
T KOG0426|consen    5 ALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPP---------------   69 (165)
T ss_pred             HHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCC---------------
Confidence            46999999999999999999999875 89999999999999999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecCCCcEEeccCC-------------CCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-------------~~Wsp~~ti~~v  128 (129)
                                  +.+|.+.++|||||.+|++|+++|.             +.|||.++|+.|
T Consensus        70 ------------km~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKI  119 (165)
T KOG0426|consen   70 ------------KMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKI  119 (165)
T ss_pred             ------------ceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHH
Confidence                        9999999999999999999999994             579999999875

>KOG0418|consensus

Probab=99.97  E-value=1.8e-32  Score=207.66  Aligned_cols=100  Identities=46%  Similarity=0.879  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHhhcCC---CCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCc
Q psy4279           2 KKNKQKELQDLGRDP---PAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQP   78 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~---~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~   78 (129)
                      .+||++|++++.+++   ..|+.+...++|+.+..+.|.||+|||||||.|.++|++|++|||+||              
T Consensus         5 ~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pP--------------   70 (200)
T KOG0418|consen    5 FKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPP--------------   70 (200)
T ss_pred             HHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCC--------------
Confidence            489999999999987   689999999999999999999999999999999999999999999999              


Q ss_pred             ccccccccCCCCCeEEeeeccccceecC-CCcEEeccCCCCcccccCcccc
Q psy4279          79 KVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        79 ~~~~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                   +|+|.|+||||||.+ +|.||||+|+++|++++||.++
T Consensus        71 -------------kv~F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtv  108 (200)
T KOG0418|consen   71 -------------KVKFITKIWHPNVSSQTGAICLDILKDQWAASLTLRTV  108 (200)
T ss_pred             -------------ceeeeeeeecCCCCcccccchhhhhhcccchhhhHHHH
Confidence                         999999999999995 8999999999999999999764

>KOG0427|consensus

Probab=99.97  E-value=4.8e-32  Score=196.08  Aligned_cols=101  Identities=37%  Similarity=0.757  Sum_probs=96.8

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      |++||||||.+|+.++|+|+... +.||+..|.+.+.|.+||-|+|.+|.+.++||+.||+++|                
T Consensus        16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esP----------------   78 (161)
T KOG0427|consen   16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESP----------------   78 (161)
T ss_pred             HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCC----------------
Confidence            57999999999999999999888 7899999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeecc-ccceecCCCcEEeccCCCCcccccCccccC
Q psy4279          81 KVSRKYPLKLPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKAS  129 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i-~HPni~~~G~iCl~~L~~~Wsp~~ti~~v~  129 (129)
                                 +|.|..++ .|||||+||+||||+|.++|+|+++|.+||
T Consensus        79 -----------qVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvC  117 (161)
T KOG0427|consen   79 -----------QVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVC  117 (161)
T ss_pred             -----------eEEEecCCCCCCceecCCeEEEEeecccCCcchhhHHHH
Confidence                       99999765 899999999999999999999999999987

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.97  E-value=3.1e-31  Score=193.40  Aligned_cols=99  Identities=59%  Similarity=1.151  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEcCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~~~-nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      +||++|++++++++++|+.+.+.++ |+++|+++|.|+++|||+||.|+++|.||++||++||                 
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP-----------------   63 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPP-----------------   63 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCC-----------------
Confidence            6999999999999999999998875 9999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCC-CCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-SQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-~~Wsp~~ti~~v  128 (129)
                                +|+|.++++||||+++|.||+++|. ++|+|++++++|
T Consensus        64 ----------~v~f~~~i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~i  101 (145)
T smart00212       64 ----------KVKFITKIYHPNVDSSGEICLDILKQEKWSPATTLETV  101 (145)
T ss_pred             ----------EEEEeCCceEeeECCCCCEehhhcCCCCCCCCCcHHHH
Confidence                      9999999999999999999999998 899999998875

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0425|consensus

Probab=99.97  E-value=1.8e-31  Score=197.45  Aligned_cols=99  Identities=39%  Similarity=0.919  Sum_probs=94.3

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEcCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~~~-nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .-|+++|++|++++.+|+++...++ |+++|.+.|+||++|.|+||.|+..+.||.+||.+||                 
T Consensus         8 ~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP-----------------   70 (171)
T KOG0425|consen    8 LLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPP-----------------   70 (171)
T ss_pred             HHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCC-----------------
Confidence            4689999999999999999998875 9999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCC-------------CCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-------------~~Wsp~~ti~~v  128 (129)
                                ++||++++||||||++|.+|+++|.             +.|+|..|+++|
T Consensus        71 ----------~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetI  120 (171)
T KOG0425|consen   71 ----------TFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETI  120 (171)
T ss_pred             ----------ceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHh
Confidence                      9999999999999999999999994             579999999986

>KOG0421|consensus

Probab=99.97  E-value=4.1e-32  Score=198.94  Aligned_cols=101  Identities=42%  Similarity=0.811  Sum_probs=98.0

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.||||+||..|+-...+|+++.|.+||++.|.++|.||++|+|+|-.|++.+.||.+||++||                
T Consensus        30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP----------------   93 (175)
T KOG0421|consen   30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPP----------------   93 (175)
T ss_pred             HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCC----------------
Confidence            3689999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 .|+|.|+.|||||+-.|.||||+|++.|+..+.|++|
T Consensus        94 -----------~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTI  130 (175)
T KOG0421|consen   94 -----------TVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTI  130 (175)
T ss_pred             -----------eeEeeccccCCCccccccchHHHHHHHHHHHHhHHHH
Confidence                       9999999999999999999999999999999998765

>KOG0424|consensus

Probab=99.96  E-value=2.8e-30  Score=188.80  Aligned_cols=100  Identities=37%  Similarity=0.815  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCC
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVG-----DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLK   76 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~-----~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~   76 (129)
                      ..||+.|.+.|.++.+-|+.+.|..     .|+..|+|.|.|++||+||||.|.+++.||++||++||            
T Consensus         6 ~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PP------------   73 (158)
T KOG0424|consen    6 LNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPP------------   73 (158)
T ss_pred             HHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCC------------
Confidence            5799999999999999999999875     38999999999999999999999999999999999999            


Q ss_pred             CcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCCC--cccccCcccc
Q psy4279          77 QPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKA  128 (129)
Q Consensus        77 ~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~--Wsp~~ti~~v  128 (129)
                                     +++|.++.||||||..|.|||++|.++  |+|+.||.+|
T Consensus        74 ---------------kckF~~pl~HPNVypsgtVcLsiL~e~~~W~paitikqi  112 (158)
T KOG0424|consen   74 ---------------KCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQI  112 (158)
T ss_pred             ---------------ccccCCCCcCCCcCCCCcEehhhhccccCCCchhhHHHH
Confidence                           999999999999999999999999865  9999999765

>KOG0894|consensus

Probab=99.95  E-value=3.6e-28  Score=187.84  Aligned_cols=98  Identities=35%  Similarity=0.742  Sum_probs=90.1

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .|||||||+.|.+++.+++.++|.++|+.+||.+|.||+||||+||.|+.++.||++||++||                 
T Consensus         7 ~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPP-----------------   69 (244)
T KOG0894|consen    7 VKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPP-----------------   69 (244)
T ss_pred             HHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCC-----------------
Confidence            599999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCC---CCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~---~~Wsp~~ti~~v  128 (129)
                         ...|.+|..||.|..         ++||++..   +.|+|.++|++|
T Consensus        70 ---aI~MiTPNGRFktnt---------RLCLSiSDfHPdsWNP~WsVStI  107 (244)
T KOG0894|consen   70 ---AITMITPNGRFKTNT---------RLCLSISDFHPDSWNPGWSVSTI  107 (244)
T ss_pred             ---eeEEECCCCceecCc---------eEEEeccccCcCcCCCcccHHHH
Confidence               556677777777655         99999885   789999999876

>KOG0422|consensus

Probab=99.95  E-value=6e-28  Score=175.78  Aligned_cols=100  Identities=37%  Similarity=0.823  Sum_probs=90.9

Q ss_pred             ChHHHHHHHHHhhcCCCCCeE-EEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCS-AGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~-~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      +.|||+|||.+|++++...+. +...++|++.|++.|. |++-||..|.|+++|+||.+|||+||               
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP---------------   66 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPP---------------   66 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCC---------------
Confidence            358999999999998876553 4556789999999998 88899999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecCCCcEEeccCC-CCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-SQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-~~Wsp~~ti~~v  128 (129)
                                  .++|.|+||||||++.|.+|+.++. ++|.|+++.++|
T Consensus        67 ------------~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqV  104 (153)
T KOG0422|consen   67 ------------KIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQV  104 (153)
T ss_pred             ------------eeeeeeeeccCCCCCCCceeeeeeecccccCcccHHHH
Confidence                        9999999999999999999999995 789999998876

>KOG0416|consensus

Probab=99.92  E-value=8.9e-26  Score=169.16  Aligned_cols=96  Identities=33%  Similarity=0.802  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .||+..|+..|..+.   ..+...++++.++++.+.||++|||+||.+++++.+|++||++.|                 
T Consensus         5 ~rRid~Dv~KL~~s~---yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSP-----------------   64 (189)
T KOG0416|consen    5 KRRIDTDVMKLLMSD---YEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSP-----------------   64 (189)
T ss_pred             ccchhhHHHHHHhcC---CeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCC-----------------
Confidence            589999999998754   446777899999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISK  127 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~  127 (129)
                                +|.|.++||||||+ .+|.||||.++..|+|.+.+..
T Consensus        65 ----------SIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL~N  101 (189)
T KOG0416|consen   65 ----------SIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDLVN  101 (189)
T ss_pred             ----------cccceeeccCCCchhccCccHHHHHhhhhhHHHHHHH
Confidence                      99999999999999 5899999999999999987754

>KOG0423|consensus

Probab=99.92  E-value=5e-26  Score=171.41  Aligned_cols=100  Identities=37%  Similarity=0.748  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      +|.+.||++.|...+++|+.|.++++|+...++.|.||.||||++|+|+..+.+..+||..||                 
T Consensus        12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPP-----------------   74 (223)
T KOG0423|consen   12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPP-----------------   74 (223)
T ss_pred             HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCC-----------------
Confidence            678999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +..|.|+||||||-+||.||++.|+.+|+|++.|..|
T Consensus        75 ----------KgYFlTKIFHPNVaaNGEICVNtLKkDW~p~LGirHv  111 (223)
T KOG0423|consen   75 ----------KGYFLTKIFHPNVAANGEICVNTLKKDWNPSLGIRHV  111 (223)
T ss_pred             ----------cceeeeeeccCCcccCceehhhhhhcccCcccchhhH
Confidence                      9999999999999999999999999999999988754

>KOG0420|consensus

Probab=99.90  E-value=1.9e-24  Score=162.04  Aligned_cols=95  Identities=41%  Similarity=0.874  Sum_probs=80.1

Q ss_pred             HHHHHHHHhhcCCCCCeEEE-Ec-CCCce--eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           4 NKQKELQDLGRDPPAQCSAG-PV-GDDLF--HWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         4 RL~kEl~~l~~~~~~~~~~~-p~-~~nl~--~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      ||++|+.++  +-+++|+.. +. .+++.  +++.+|. |+++.|+||.|.|.+.+|+.||++||               
T Consensus        32 rl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PP---------------   93 (184)
T KOG0420|consen   32 RLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPP---------------   93 (184)
T ss_pred             HHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCC---------------
Confidence            566665555  455666532 22 23333  5999997 99999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                  +|++.|++|||||+.+|.|||++|+++|+|+.+|.+|
T Consensus        94 ------------KVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sI  130 (184)
T KOG0420|consen   94 ------------KVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSI  130 (184)
T ss_pred             ------------eeeeeeccccCCcCCcchHHHHHHHhcCccccchHHH
Confidence                        9999999999999999999999999999999999987

>KOG0428|consensus

Probab=99.87  E-value=1.5e-22  Score=159.68  Aligned_cols=96  Identities=41%  Similarity=0.806  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .|||+||..+|+ ++.+.+.+.|.+||+++|+++|+||.||-|+||+|+.+|.||.+||++||                 
T Consensus        13 VkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPP-----------------   74 (314)
T KOG0428|consen   13 VKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPP-----------------   74 (314)
T ss_pred             HHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCC-----------------
Confidence            589999999997 88889999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCC---CCcccccCccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISK  127 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~---~~Wsp~~ti~~  127 (129)
                         ++-+.+|..||.+         |.+|||++.+   +.|.|+++|.+
T Consensus        75 ---s~iLLTpNGRFE~---------nkKiCLSISgyHPEtWqPSWSiRT  111 (314)
T KOG0428|consen   75 ---SIILLTPNGRFEV---------NKKICLSISGYHPETWQPSWSIRT  111 (314)
T ss_pred             ---eEEEEcCCCceee---------CceEEEEecCCCccccCcchhHHH
Confidence               2223334444444         5599999996   78999999864

>KOG0895|consensus

Probab=99.60  E-value=5.6e-16  Score=140.37  Aligned_cols=99  Identities=32%  Similarity=0.653  Sum_probs=87.5

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccccc
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKV   82 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~~   82 (129)
                      +..+.|+.-|..+-+.|+.|+..++.+.-..+.|.|+.||||++|+|+|+|.||++||..||                  
T Consensus       854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp------------------  915 (1101)
T KOG0895|consen  854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPP------------------  915 (1101)
T ss_pred             HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCC------------------
Confidence            34566677777788999999999999988999999999999999999999999999999999                  


Q ss_pred             ccccCCCCCeEEeeec--cccceecCCCcEEeccCC-------CCcccccCcccc
Q psy4279          83 SRKYPLKLPKVAFTTR--IYHPNINSNGSICLDILR-------SQWSPALTISKA  128 (129)
Q Consensus        83 ~~~~~~~~p~v~f~t~--i~HPni~~~G~iCl~~L~-------~~Wsp~~ti~~v  128 (129)
                               .+.+.+-  .++||.|++|++|+++|+       +-|+|+.++.+|
T Consensus       916 ---------~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~  961 (1101)
T KOG0895|consen  916 ---------LVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQV  961 (1101)
T ss_pred             ---------ceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHH
Confidence                     8888853  589999999999999995       569999888764

>KOG0895|consensus

Probab=99.55  E-value=1.6e-14  Score=131.03  Aligned_cols=100  Identities=33%  Similarity=0.690  Sum_probs=92.0

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+|+++|+.-+.++.++|+.+.|.+..+....+.|.|+.|+||++|+|.|.|.||..||..||                 
T Consensus       284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp-----------------  346 (1101)
T KOG0895|consen  284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPP-----------------  346 (1101)
T ss_pred             HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCc-----------------
Confidence            479999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeec---cccceecCCCcEEeccCC-------CCcccc-cCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTR---IYHPNINSNGSICLDILR-------SQWSPA-LTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~---i~HPni~~~G~iCl~~L~-------~~Wsp~-~ti~~v  128 (129)
                                .+++.+.   .+.||.|.+|+||+++|.       +.|+|. .++.++
T Consensus       347 ----------~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qv  394 (1101)
T KOG0895|consen  347 ----------HVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQV  394 (1101)
T ss_pred             ----------eeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhh
Confidence                      9999976   589999999999999994       579998 666543

>KOG0429|consensus

Probab=99.35  E-value=3.5e-12  Score=99.60  Aligned_cols=91  Identities=25%  Similarity=0.445  Sum_probs=78.8

Q ss_pred             HHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccccc
Q psy4279           4 NKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVS   83 (129)
Q Consensus         4 RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~~~   83 (129)
                      .|+.|+..+.+.+.+|+.|.|.-.|-+.|.++|++. .+.|+||.|+|+|.+|+|||.+-                    
T Consensus        23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr-~GiyaggVFRFtIliPdnfPdd~--------------------   81 (258)
T KOG0429|consen   23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVR-KGIYAGGVFRFTILIPDNFPDDS--------------------   81 (258)
T ss_pred             HHHHHHHHHHhccCCceEEcccccccceEEEEEEEe-cccccCceEEEEEEcCccCCCcC--------------------
Confidence            467788888889999999999999999999999964 56799999999999999999764                    


Q ss_pred             cccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcc
Q psy4279          84 RKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWS  120 (129)
Q Consensus        84 ~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Ws  120 (129)
                           .+|+|.|.+..+||+|. .++.+|++---..|+
T Consensus        82 -----dlPrvvF~q~vfHP~icp~skeLdl~raf~eWR  114 (258)
T KOG0429|consen   82 -----DLPRVVFEQSVFHPLICPKSKELDLNRAFPEWR  114 (258)
T ss_pred             -----CCCeEEeeccccccccCCCccceeHhhhhhhhh
Confidence                 25699999999999999 589999976544465

>KOG0896|consensus

Probab=99.12  E-value=1.9e-10  Score=83.62  Aligned_cols=98  Identities=31%  Similarity=0.530  Sum_probs=77.4

Q ss_pred             HHHHHHHHhhcCCCCC-eEEEEcC-CC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           4 NKQKELQDLGRDPPAQ-CSAGPVG-DD--LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         4 RL~kEl~~l~~~~~~~-~~~~p~~-~n--l~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      ||.+|+.+-++.-.++ ++-...+ ||  +..|...|.||+.|+||+.+|.++|...++||..||               
T Consensus         9 rlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP---------------   73 (138)
T KOG0896|consen    9 RLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPP---------------   73 (138)
T ss_pred             hhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCc---------------
Confidence            7888888777755444 3333333 33  569999999999999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecC-CCcEEeccCC--CCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILR--SQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~--~~Wsp~~ti~~v  128 (129)
                                  .++|.+++--+.+++ +|-+.-..+.  +.|+-+++++.|
T Consensus        74 ------------~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~v  113 (138)
T KOG0896|consen   74 ------------TVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMV  113 (138)
T ss_pred             ------------eeEEEEEeeecccccCCCccCccccchhhcccccchhhHH
Confidence                        999999998888884 6666543332  789999988764

>KOG0897|consensus

Probab=97.99  E-value=2e-06  Score=61.34  Aligned_cols=53  Identities=25%  Similarity=0.587  Sum_probs=39.7

Q ss_pred             EEEEEEcCCCCCCCCCCCCCcccccCCCCcccccccccCCCCCeEEeeeccc-cceecCCCcEEeccCC-CCcccccCcc
Q psy4279          49 FFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIY-HPNINSNGSICLDILR-SQWSPALTIS  126 (129)
Q Consensus        49 y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~i~-HPni~~~G~iCl~~L~-~~Wsp~~ti~  126 (129)
                      -.+.+.|++|||+.||                           .+|-..+.. ..-+-.+|+||+.+|. +.|+.+++|+
T Consensus        13 ill~~~f~~~fp~~pp---------------------------f~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve   65 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPP---------------------------FPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVE   65 (122)
T ss_pred             eEeeeecccCCCCCCC---------------------------cceeeeecccCCEEecchhhHHHHHccccccchhhHH
Confidence            4567789999999999                           665554332 2223368999999996 5699999998


Q ss_pred             cc
Q psy4279         127 KA  128 (129)
Q Consensus       127 ~v  128 (129)
                      .+
T Consensus        66 ~v   67 (122)
T KOG0897|consen   66 RV   67 (122)
T ss_pred             HH
Confidence            75

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=97.99  E-value=8.2e-06  Score=58.95  Aligned_cols=56  Identities=34%  Similarity=0.832  Sum_probs=46.7

Q ss_pred             CCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccccccccCCCCCeEEeeecc---ccceecCCCcEEe---ccCCCC
Q psy4279          45 QGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRI---YHPNINSNGSICL---DILRSQ  118 (129)
Q Consensus        45 ~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~i---~HPni~~~G~iCl---~~L~~~  118 (129)
                      .|+.+.++|.||++||..||                           .+....+.   +-|||+.+|.||+   ...-+.
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp---------------------------~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~   86 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPP---------------------------RVYLEDPKQFPLLPHVESDGKLCLLDEELVLDP   86 (133)
T ss_pred             CCeEEEEEEEECCcccCcCC---------------------------EEEecCccccCccCeEcCCCeEEEecCCcccCc
Confidence            78999999999999999999                           77666432   6799999999999   666788


Q ss_pred             cccccCccc
Q psy4279         119 WSPALTISK  127 (129)
Q Consensus       119 Wsp~~ti~~  127 (129)
                      |.|.-++.+
T Consensus        87 ~~P~~~~~~   95 (133)
T PF14461_consen   87 WDPEGIIAD   95 (133)
T ss_pred             cCHHHHHHH
Confidence            998766543

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.61  E-value=9.5e-05  Score=52.95  Aligned_cols=67  Identities=30%  Similarity=0.643  Sum_probs=40.8

Q ss_pred             ceeEEEEEeCCCCCCCCCcEEEEE--EEcCCCCCCCCCCCCCcccccCCCCcccccccccCCCCCeEEeeec----c-cc
Q psy4279          29 LFHWQATIMGPPDSPYQGGVFFLT--IHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTR----I-YH  101 (129)
Q Consensus        29 l~~w~~~i~gp~~tpY~gg~y~~~--i~fp~~YP~~pP~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~----i-~H  101 (129)
                      +....++|.    -.|+|..|.+-  |-+|++||..||                           .+.....    | -+
T Consensus        32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP---------------------------~v~v~pt~~m~I~~~   80 (121)
T PF05743_consen   32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPP---------------------------IVYVRPTPSMVIKPS   80 (121)
T ss_dssp             EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSS---------------------------EEEE-GCCTECCGGC
T ss_pred             EEEEecCcc----cccCCcccceeEEEEEcccCCCCCC---------------------------EEEEeCCCCCCcCCC
Confidence            444455543    25899999654  557999999999                           4433321    1 24


Q ss_pred             ceecCCCcEEeccCCCCccc-ccCccc
Q psy4279         102 PNINSNGSICLDILRSQWSP-ALTISK  127 (129)
Q Consensus       102 Pni~~~G~iCl~~L~~~Wsp-~~ti~~  127 (129)
                      .+|+++|+|.+..| ++|++ +.++.+
T Consensus        81 ~~Vd~~G~v~~pyL-~~W~~~~s~L~~  106 (121)
T PF05743_consen   81 HHVDSNGRVYLPYL-QNWNPPSSNLVD  106 (121)
T ss_dssp             CCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred             CeECCCCCEeCchh-ccCCCCCCCHHH
Confidence            49999999999999 78988 666543

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=96.94  E-value=0.0059  Score=45.38  Aligned_cols=58  Identities=16%  Similarity=0.155  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHhhc-------CCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEE--EEEEcCCCCCCCCC
Q psy4279           2 KKNKQKELQDLGR-------DPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFF--LTIHFPTDYPFKPP   64 (129)
Q Consensus         2 ~rRL~kEl~~l~~-------~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~--~~i~fp~~YP~~pP   64 (129)
                      ..||..||+.|-+       +..+-+.++.+ .+=..|.+.---    .|+--.|.  +.+++|..||..||
T Consensus        26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn-~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~p   92 (161)
T PF08694_consen   26 VQRLKEEYQALIKYVENNKENDNDWFRLESN-KEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAP   92 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS--
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCeEEeccC-CCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCc
Confidence            4799999999765       22344555533 334456442211    12334444  55556999999999

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.00  E-value=0.031  Score=37.73  Aligned_cols=61  Identities=15%  Similarity=0.182  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCC
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMG--PPDSPYQGGVFFLTIHFPTDYPFKPP   64 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~g--p~~tpY~gg~y~~~i~fp~~YP~~pP   64 (129)
                      .+.+.|+..|..--++.+ ......+-..+.+.+..  ...+.-....+.+.+.||++||..+|
T Consensus         4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P   66 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPP   66 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--
T ss_pred             HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCC
Confidence            467888998887544444 22233455566666632  23334456789999999999998898

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=95.01  E-value=0.19  Score=33.62  Aligned_cols=57  Identities=19%  Similarity=0.226  Sum_probs=31.1

Q ss_pred             HHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCC-CCCCCcEEEEEEEcCCCCCCCCC
Q psy4279           8 ELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPD-SPYQGGVFFLTIHFPTDYPFKPP   64 (129)
Q Consensus         8 El~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~-tpY~gg~y~~~i~fp~~YP~~pP   64 (129)
                      |+..|++--++.+...........+.+.+....+ +.-..-...+.+.||++||..+|
T Consensus         1 EieaL~sIy~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P   58 (107)
T smart00591        1 ELEALESIYPEDFEVIDEDARIPEITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAP   58 (107)
T ss_pred             ChHHHHhhccceeEEecCCCCccEEEEEEecCCCCCCccceEEEEEEECCCCCCCCCC
Confidence            4455555444444333222222244455432211 12334568899999999999999

>KOG2391|consensus

Probab=94.51  E-value=0.11  Score=43.54  Aligned_cols=55  Identities=27%  Similarity=0.623  Sum_probs=41.3

Q ss_pred             CCCCCCcEEEEEEE--cCCCCCCCCCCCCCcccccCCCCcccccccccCCCCCeEEeee-----ccccceecCCCcEEec
Q psy4279          41 DSPYQGGVFFLTIH--FPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTT-----RIYHPNINSNGSICLD  113 (129)
Q Consensus        41 ~tpY~gg~y~~~i~--fp~~YP~~pP~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~f~t-----~i~HPni~~~G~iCl~  113 (129)
                      -.+|.|.+|.+=|.  +.+.||+.||                           .+....     ...|-||++||.|-|.
T Consensus        60 p~~~~G~tYnIPV~iWlldtyP~~pP---------------------------~c~VnPT~~M~ik~~~hVd~nG~V~LP  112 (365)
T KOG2391|consen   60 PVPYQGVTYNIPVIIWLLDTYPYYPP---------------------------ICYVNPTSTMIIKVHEHVDPNGKVYLP  112 (365)
T ss_pred             cccccCCcccceEEEEecccCCCCCC---------------------------eEEecCCchhhhHHhhccCCCCeEech
Confidence            34799999986655  5999999999                           332221     1249999999999999


Q ss_pred             cCCCCccccc
Q psy4279         114 ILRSQWSPAL  123 (129)
Q Consensus       114 ~L~~~Wsp~~  123 (129)
                      .| ..|.+..
T Consensus       113 YL-h~W~~ps  121 (365)
T KOG2391|consen  113 YL-HNWDPPS  121 (365)
T ss_pred             hh-ccCCCcc
Confidence            99 5687643

>KOG3357|consensus

Probab=94.04  E-value=0.079  Score=39.01  Aligned_cols=57  Identities=18%  Similarity=0.225  Sum_probs=33.2

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCC
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGG----------VFFLTIHFPTDYPFKPP   64 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg----------~y~~~i~fp~~YP~~pP   64 (129)
                      .+||.+|++.|.+.-      +-+.++-..|.-.=.-++||-|-|.          .|.+++++|-.||..+|
T Consensus        29 vqrlkeey~sli~yv------qnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tap   95 (167)
T KOG3357|consen   29 VQRLKEEYQSLIAYV------QNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAP   95 (167)
T ss_pred             HHHHHHHHHHHHHHH------HhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCc
Confidence            479999999986521      1112222334222233455555542          34456667999999999

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=86.64  E-value=3.2  Score=29.94  Aligned_cols=46  Identities=24%  Similarity=0.354  Sum_probs=35.4

Q ss_pred             CCeEEEEcCCCceeEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCC
Q psy4279          18 AQCSAGPVGDDLFHWQATIMG--PPDSPYQGGVFFLTIHFPTDYPFKPP   64 (129)
Q Consensus        18 ~~~~~~p~~~nl~~w~~~i~g--p~~tpY~gg~y~~~i~fp~~YP~~pP   64 (129)
                      -|+..+...+.-..|-+ |.|  .+.+.|.+..-.+-|.+|..||..+|
T Consensus        12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~   59 (122)
T PF14462_consen   12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPL   59 (122)
T ss_pred             cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCC
Confidence            35566666666666765 555  55667999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		3e-47
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		1e-45
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		2e-45
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		4e-45
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		5e-45
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		5e-45
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		5e-45
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		5e-45
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		5e-45
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-45
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		6e-45
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		6e-45
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		1e-44
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-44
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-44
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-44
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		4e-44
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-44
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		4e-44
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		7e-44
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		7e-44
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		9e-44
3jvz_A	146	E2~ubiquitin-Hect Length = 146		3e-43
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		1e-42
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		4e-42
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-41
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		1e-39
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		5e-39
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		7e-36
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		9e-30
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		3e-29
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		4e-19
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		4e-19
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		9e-19
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		5e-18
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		7e-18
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		9e-18
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		1e-17
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		1e-17
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		2e-17
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		2e-17
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		3e-17
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		3e-17
1jas_A	152	Hsubc2b Length = 152		7e-17
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		3e-16
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		9e-16
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		9e-16
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		9e-16
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		9e-16
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		1e-15
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		2e-15
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-15
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		1e-14
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		1e-14
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-13
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		2e-13
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		2e-13
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-13
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		3e-13
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-13
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-12
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		1e-12
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		1e-12
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		1e-12
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		1e-12
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		2e-11
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		3e-11
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		1e-10
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		5e-10
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		6e-10
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		6e-10
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		1e-09
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		1e-09
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		2e-09
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		2e-09
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		6e-09
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		6e-09
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		6e-09
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		4e-08
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		8e-08
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		1e-07
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		1e-07
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		1e-07
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		2e-07
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		2e-07
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		2e-07
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		2e-07
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		2e-07
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		2e-07
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		2e-07
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		2e-07
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		4e-07
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		4e-07
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		5e-07
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		8e-07
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		2e-06
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		2e-06
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		2e-06
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		3e-06
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		4e-06
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		7e-06
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		1e-05
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		1e-05

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/126 (73%), Positives = 94/126 (74%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K  QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTD    
Sbjct: 7   KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTD---- 62
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 63  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 99
Query: 123 LTISKA 128
           LTISK 
Sbjct: 100 LTISKV 105

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score =  177 bits (449), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/126 (71%), Positives = 92/126 (73%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K  QKELQDL RDPPAQCSAGPVGDDLFHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 9   KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTD---- 64
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTT+IYHPNINSNGSICLDILRSQWSPA
Sbjct: 65  -----------------------YPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPA 101
Query: 123 LTISKA 128
           LT+SK 
Sbjct: 102 LTVSKV 107

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score =  176 bits (447), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 6   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSI LDILRSQWSPA
Sbjct: 62  -----------------------YPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 98
Query: 123 LTISKA 128
           LTISK 
Sbjct: 99  LTISKV 104

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score =  176 bits (445), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 14  KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 69
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 70  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 106
Query: 123 LTISKA 128
           LTISK 
Sbjct: 107 LTISKV 112

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score =  176 bits (445), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 14  KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 69
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 70  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 106
Query: 123 LTISKA 128
           LTISK 
Sbjct: 107 LTISKV 112

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 6   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 62  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
Query: 123 LTISKA 128
           LTISK 
Sbjct: 99  LTISKV 104

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 6   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 62  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
Query: 123 LTISKA 128
           LTISK 
Sbjct: 99  LTISKV 104

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 4   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 59
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 60  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96
Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 9   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 64
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 65  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 101
Query: 123 LTISKA 128
           LTISK 
Sbjct: 102 LTISKV 107

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score =  175 bits (444), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 22  KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 77
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 78  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 114
Query: 123 LTISKA 128
           LTISK 
Sbjct: 115 LTISKV 120

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score =  175 bits (443), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 3   KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 58
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 59  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 95
Query: 123 LTISKA 128
           LTISK 
Sbjct: 96  LTISKV 101

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score =  175 bits (443), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 6   KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 62  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
Query: 123 LTISKA 128
           LTISK 
Sbjct: 99  LTISKV 104

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 12  KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 67
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 68  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 104
Query: 123 LTISKA 128
           LTISK 
Sbjct: 105 LTISKV 110

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 6   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQW PA
Sbjct: 62  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPA 98
Query: 123 LTISKA 128
           LTISK 
Sbjct: 99  LTISKV 104

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score =  173 bits (439), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 6   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLD LRSQWSPA
Sbjct: 62  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPA 98
Query: 123 LTISKA 128
           LTISK 
Sbjct: 99  LTISKV 104

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score =  173 bits (439), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQAT MGP DSPYQGGVFFLTIHFPTD    
Sbjct: 6   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 62  -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
Query: 123 LTISKA 128
           LTISK 
Sbjct: 99  LTISKV 104

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score =  172 bits (437), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K  QKEL DL RDPPA CSAGPVGDDLFHWQATIMGPPDS YQGGVFFLT+HFPTD    
Sbjct: 10  KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD---- 65
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PK+AFTT+IYHPNINSNGSICLDILRSQWSPA
Sbjct: 66  -----------------------YPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPA 102
Query: 123 LTISKA 128
           LT+SK 
Sbjct: 103 LTVSKV 108

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score =  172 bits (436), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K  QKEL DL RDPPA CSAGPVGDDLFHWQATIMGPPDS YQGGVFFLT+HFPTD    
Sbjct: 22  KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD---- 77
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PK+AFTT+IYHPNINSNGSICLDILRSQWSPA
Sbjct: 78  -----------------------YPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPA 114
Query: 123 LTISKA 128
           LT+SK 
Sbjct: 115 LTVSKV 120

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score =  172 bits (436), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K  QKEL DL RDPPA CSAGPVGDDLFHWQATIMGPPDS YQGGVFFLT+HFPTD    
Sbjct: 6   KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD---- 61
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PK+AFTT+IYHPNINSNGSICLDILRSQWSPA
Sbjct: 62  -----------------------YPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPA 98
Query: 123 LTISKA 128
           LT+SK 
Sbjct: 99  LTVSKV 104

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score =  171 bits (434), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 7   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 62
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSI LDILRSQWSPA
Sbjct: 63  -----------------------YPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 99
Query: 123 LTISKA 128
           LTISK 
Sbjct: 100 LTISKV 105

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score =  171 bits (434), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 4   KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 59
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSI LDILRSQWSPA
Sbjct: 60  -----------------------YPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 96
Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score =  171 bits (434), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 22  KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 77
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSI LDILRSQWSPA
Sbjct: 78  -----------------------YPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPA 114
Query: 123 LTISKA 128
           LTISK 
Sbjct: 115 LTISKV 120

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 88/126 (69%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 3   KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 58
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHPNINSNGSI LDILRSQWSPA
Sbjct: 59  -----------------------YPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 95
Query: 123 LTISKA 128
           L ISK 
Sbjct: 96  LKISKV 101

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score =  167 bits (423), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 87/126 (69%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPPAQC AGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD    
Sbjct: 4   KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 59
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKVAFTTRIYHP INSNGSI LDILRSQWSPA
Sbjct: 60  -----------------------YPFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPA 96
Query: 123 LTISKA 128
           LTISK 
Sbjct: 97  LTISKV 102

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score =  166 bits (419), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 88/126 (69%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K  QKEL DL RDPPA C AGPVGDDLFHWQATIMGPPDS YQGGVFFLT+HFPTD    
Sbjct: 10  KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD---- 65
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PK+AFTT+IYHPNINSNGSI LDILRSQWSPA
Sbjct: 66  -----------------------YPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPA 102
Query: 123 LTISKA 128
           LT+SK 
Sbjct: 103 LTVSKV 108

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score =  163 bits (413), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 86/125 (68%), Gaps = 27/125 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   +EL DLG+DPP+  SAGPVGDDLFHWQATIMGP DSPY GGVFFL+IHFPTD    
Sbjct: 4   KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTD---- 59
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKV FTTRIYHPNINSNGSICLDILR QWSPA
Sbjct: 60  -----------------------YPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPA 96
Query: 123 LTISK 127
           LTISK
Sbjct: 97  LTISK 101

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score =  157 bits (397), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 86/125 (68%), Gaps = 27/125 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL RDPP  CSAGPVGDDL+HWQA+IMGP DSPY GGVFFL+IHFPTD    
Sbjct: 5   KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTD---- 60
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PK++FTT+IYHPNIN+NG+ICLDIL+ QWSPA
Sbjct: 61  -----------------------YPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPA 97
Query: 123 LTISK 127
           LT+SK
Sbjct: 98  LTLSK 102

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score =  155 bits (393), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 83/126 (65%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K   KEL DL +DPP  CSAGPVGDD+FHWQATIMGP DSPY GGVFFL IHFP+D    
Sbjct: 24  KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSD---- 79
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKV FTT+IYHPNINS G+ICLDIL+ QWSPA
Sbjct: 80  -----------------------YPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPA 116
Query: 123 LTISKA 128
           LTISK 
Sbjct: 117 LTISKV 122

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score =  145 bits (365), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 80/123 (65%), Gaps = 27/123 (21%)
Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
           QKEL+++ +DPP  CSAGPVGDD+FHW ATI GP DSPYQGG+FFL +HFP D       
Sbjct: 10  QKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVD------- 62
Query: 66  XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                               YP K P+V F T++YHPNIN NG ICLDIL+ QWSPALT+
Sbjct: 63  --------------------YPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTL 102
Query: 126 SKA 128
           S+ 
Sbjct: 103 SRV 105

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score =  125 bits (313), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 75/126 (59%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K  QKEL D+  DPP  CSAGP GD+++ W++TI+GPP S Y+GGVFFL I F       
Sbjct: 51  KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITF------- 103
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                               + +YP K PKV F TRIYH NINS G ICLDIL+  WSPA
Sbjct: 104 --------------------TPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPA 143
Query: 123 LTISKA 128
           LTISK 
Sbjct: 144 LTISKV 149

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 74/126 (58%), Gaps = 27/126 (21%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K  QKEL ++  DPP  CSAGP GD+++ W++TI+GPP S Y+GGVFFL I F  D    
Sbjct: 6   KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD---- 61
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
                                  YP K PKV F TRIYH NINS G ICLDIL+  WSPA
Sbjct: 62  -----------------------YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPA 98
Query: 123 LTISKA 128
           LTISK 
Sbjct: 99  LTISKV 104

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE + L  DP    +A P  D+L ++Q TI GP  SPY+ G+F L ++ P D        
Sbjct: 10  KETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD-------- 61
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                              YP++ PKV F T+IYHPNI+  G ICLD+L++ WSPAL I
Sbjct: 62  -------------------YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI 101

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE + L  DP    +A P  D+L ++Q TI GP  SPY+ G+F L ++ P D        
Sbjct: 12  KETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD-------- 63
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                              YP++ PKV F T+IYHPNI+  G ICLD+L++ WSPAL I
Sbjct: 64  -------------------YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI 103

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 27/125 (21%)
Query: 2   KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           +K   ++ + L +DPPA  S  P  +++  W A I GP D+P+ GG F L++ F  DY  
Sbjct: 6   RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY-- 63
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
                                    P K P V F +R++HPNI ++GSICLDIL++QWSP
Sbjct: 64  -------------------------PNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSP 98
Query: 122 ALTIS 126
              ++
Sbjct: 99  IYDVA 103

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE + L  DP    +A P  D+L ++Q TI GP  SPY+ G+F L ++ P D        
Sbjct: 10  KETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD-------- 61
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                              YP++ PKV F T+IYHPNI+  G I LD+L++ WSPAL I
Sbjct: 62  -------------------YPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQI 101

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 29/128 (22%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           K   KE+Q +  DP A  +   V + D+ H + T +GPP +PY+GG F + I  P +   
Sbjct: 5   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME--- 61
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWS 120
                                   YP K PK+ F T++YHPNI+S  G+ICLDILR+ WS
Sbjct: 62  ------------------------YPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWS 97
Query: 121 PALTISKA 128
           P +T+  A
Sbjct: 98  PVITLKSA 105

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 27/125 (21%)
Query: 2   KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           ++   ++ + L  DPPA  S  P  D++  W+A I GP ++P++ G F L++ F      
Sbjct: 6   RRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF------ 59
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
                                + +YP K P V F ++++HPN+ ++GSICLDIL+++WSP
Sbjct: 60  ---------------------TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSP 98
Query: 122 ALTIS 126
              ++
Sbjct: 99  TYDVA 103

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 27/125 (21%)
Query: 2   KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           ++   ++ + L  DPPA  S  P  D++  W+A I GP ++P++ G F L++ F      
Sbjct: 9   RRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF------ 62
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
                                + +YP K P V F ++++HPN+ ++GSICLDIL+++WSP
Sbjct: 63  ---------------------TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSP 101
Query: 122 ALTIS 126
              ++
Sbjct: 102 TYDVA 106

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 28/124 (22%)
Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
           QKEL+D+  +   +  A     + F W   I GP  +PY+GG F L I  P D       
Sbjct: 29  QKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPND------- 81
Query: 66  XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALT 124
                               YP   PK+ F T+I+HPNI+S  G+ICLD+L+++WSPALT
Sbjct: 82  --------------------YPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALT 121
Query: 125 ISKA 128
           I  A
Sbjct: 122 IRTA 125

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE Q+L  +PP    A PV ++  H+   I GP  +PY+GG + L +  P          
Sbjct: 8   KETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLP---------- 57
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                             +YP++ PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I
Sbjct: 58  -----------------EQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE Q+L  +PP    A PV ++  H+   I GP  +PY+GG + L +  P          
Sbjct: 8   KETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLP---------- 57
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                             +YP++ PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I
Sbjct: 58  -----------------EQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 29/128 (22%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           K   KE+Q +  DP A  +   V + D+ H + T +GPP +PY+GG F + I  P +   
Sbjct: 4   KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME--- 60
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWS 120
                                   YP K PK+ F T++YHPNI+S  G+ICLDIL++ WS
Sbjct: 61  ------------------------YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWS 96
Query: 121 PALTISKA 128
           P +T+  A
Sbjct: 97  PVITLKSA 104

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE + L  DP    +A P  D+L ++Q TI GP  SPY+ G+F L ++ P D        
Sbjct: 10  KETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD-------- 61
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                              YP++ PKV F T+IYHP I+  G I LD+L++ WSPAL I
Sbjct: 62  -------------------YPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQI 101

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 27/125 (21%)
Query: 2   KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           ++   ++ + L  DPP   S  P  +++  W A I GP  +P++ G F L I F      
Sbjct: 6   RRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEF------ 59
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
                                S +YP K P V F ++++HPN+ ++GSICLDIL+++WSP
Sbjct: 60  ---------------------SEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSP 98
Query: 122 ALTIS 126
              +S
Sbjct: 99  TYDVS 103

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 27/125 (21%)
Query: 2   KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           ++   ++ + +  D P   SA P+ D++  W A I+GP D+PY+ G F L + F      
Sbjct: 6   RRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEF------ 59
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
                                  +YP K P V F + ++HPN+ +NG ICLDIL+++W+P
Sbjct: 60  ---------------------DEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTP 98
Query: 122 ALTIS 126
              ++
Sbjct: 99  TYDVA 103

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE Q L  +P     A P   +  ++   I GP DSP++GG F L +  P +Y       
Sbjct: 10  KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY------- 62
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                               P+  PKV F T+IYHPN++  G ICLDIL+ +WSPAL I
Sbjct: 63  --------------------PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 101

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE Q L  +P     A P   +  ++   I GP DSP++GG F L +  P +Y       
Sbjct: 12  KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY------- 64
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                               P+  PKV F T+IYHPN++  G ICLDIL+ +WSPAL I
Sbjct: 65  --------------------PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 103

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE Q L  +P     A P   +  ++   I GP DSP++GG F L +  P +Y       
Sbjct: 13  KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY------- 65
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                               P+  PKV F T+IYHPN++  G ICLDIL+ +WSPAL I
Sbjct: 66  --------------------PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 104

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE Q L  +P     A P   +  ++   I GP DSP++GG F L +  P +Y       
Sbjct: 8   KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY------- 60
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                               P+  PKV F T+IYHPN++  G ICLDIL+ +WSPAL I
Sbjct: 61  --------------------PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 99

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE Q L  +P     A P   +  ++   I GP DSP++GG F L +  P +Y       
Sbjct: 15  KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY------- 67
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                               P+  PKV F T+IYHPN++  G ICLDIL+ +WSPAL I
Sbjct: 68  --------------------PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 106

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 56/110 (50%), Gaps = 28/110 (25%)
Query: 20  CSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPK 79
            SA  VG D+  W+  I GP  +PY+GG F L I  P D                     
Sbjct: 65  VSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPD--------------------- 103
Query: 80  VKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA 128
                 YP   PK+ F T+I+HPNI+S  G+ICLDIL+ +WSPALTI  A
Sbjct: 104 ------YPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTA 147

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 28/113 (24%)
Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXX 64
           +++L +L ++P    SAG + D DL+ W+  I+GPPD+ Y+GGVF   + FP D      
Sbjct: 23  RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKD------ 76
Query: 65  XXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS 117
                                YPL+ PK+ F T I+HPN++ NG +C+ IL  
Sbjct: 77  ---------------------YPLRPPKMKFITEIWHPNVDKNGDVCISILHE 108

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 27/125 (21%)
Query: 1   MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYX 60
           + K  Q+EL+ L        +A P GD+LF W AT+ GP D+ Y+   + LT+ FP+DY 
Sbjct: 10  VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY- 68
Query: 61  XXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
                                     P K P V FTT  +HPN++ +G+ICLDIL+  W+
Sbjct: 69  --------------------------PYKPPVVKFTTPCWHPNVDQSGNICLDILKENWT 102
Query: 121 PALTI 125
            +  +
Sbjct: 103 ASYDV 107

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 41/140 (29%)
Query: 2   KKNKQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYX 60
           +K   KELQ L +D P    AGP  ++ +F W   I GPPD+PY  GVF   + FP DY 
Sbjct: 6   QKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY- 64
Query: 61  XXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--- 117
                                     PL  PK+ FT  I HPNI  NG +C+ IL S   
Sbjct: 65  --------------------------PLSPPKLTFTPSILHPNIYPNGEVCISILHSPGD 98
Query: 118 ----------QWSPALTISK 127
                     +WSP  ++ K
Sbjct: 99  DPNMYELAEERWSPVQSVEK 118

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 28/111 (25%)
Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXX 64
           +K+L D+ R P    SAG V D D++ W+  ++GPPD+ Y+GG F   + FP        
Sbjct: 9   KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFP-------- 60
Query: 65  XXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL 115
                              R YP K PK+ F + I+HPNI+  G++C+ IL
Sbjct: 61  -------------------RDYPQKPPKMKFISEIWHPNIDKEGNVCISIL 92

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 28/108 (25%)
Query: 19  QCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQP 78
           Q     V ++    +  I GPPD+PY+GG + L I  P                      
Sbjct: 79  QIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP---------------------- 116
Query: 79  KVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTI 125
                  YP   PKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+
Sbjct: 117 -----ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL 159

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K + KE+         Q     V ++    +  I GPPD+PY+GG + L I  P      
Sbjct: 12  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP------ 65
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
                                  YP   PKV F T+I+HPNI+S  G+ICLDIL+ QW+ 
Sbjct: 66  ---------------------ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 104
Query: 122 ALTI 125
           A+T+
Sbjct: 105 AMTL 108

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K + KE+         Q     V ++    +  I GPPD+PY+GG + L I  P      
Sbjct: 11  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP------ 64
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
                                  YP   PKV F T+I+HPNI+S  G+ICLDIL+ QW+ 
Sbjct: 65  ---------------------ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 103
Query: 122 ALTI 125
           A+T+
Sbjct: 104 AMTL 107

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K + KE+         Q     V ++    +  I GPPD+PY+GG + L I  P      
Sbjct: 27  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP------ 80
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
                                  YP   PKV F T+I+HPNI+S  G+ICLDIL+ QW+ 
Sbjct: 81  ---------------------ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 119
Query: 122 ALTI 125
           A+T+
Sbjct: 120 AMTL 123

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 28/108 (25%)
Query: 19  QCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQP 78
           Q     V ++    +  I GPPD+PY+GG + L I  P                      
Sbjct: 30  QIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP---------------------- 67
Query: 79  KVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTI 125
                  YP   PKV F T+I+HPNI+S  G+ICLDIL+ QW+ A+T+
Sbjct: 68  -----ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL 110

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 27/119 (22%)
Query: 7   KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           KE+  L  DPP      P  +DL   Q TI GP  +PY GG+F +               
Sbjct: 20  KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRM--------------- 64
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                       K+ + + +P   PK  F T+I+HPN+ +NG IC+++L+  W+  L I
Sbjct: 65  ------------KLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGI 111

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 41/139 (29%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           K    E + L  +PP    AGP+ ++  F W+A IMGP D+ ++ GVF   + FP DY  
Sbjct: 6   KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY-- 63
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS---- 117
                                    PL  PK+ FT  ++HPNI  +G +C+ IL +    
Sbjct: 64  -------------------------PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDD 98
Query: 118 ---------QWSPALTISK 127
                    +WSP  ++ K
Sbjct: 99  PMGYESSAERWSPVQSVEK 117

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 41/139 (29%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           K    E + L  +PP    AGP+ ++  F W+A IMGP D+ ++ GVF   + FP DY  
Sbjct: 9   KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY-- 66
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS---- 117
                                    PL  PK+ FT  ++HPNI  +G +C+ IL +    
Sbjct: 67  -------------------------PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDD 101
Query: 118 ---------QWSPALTISK 127
                    +WSP  ++ K
Sbjct: 102 PMGYESSAERWSPVQSVEK 120

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 41/139 (29%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           K    E + L  +PP    AGP+ ++  F W+A IMGP D+ ++ GVF   + FP DY  
Sbjct: 12  KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY-- 69
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS---- 117
                                    PL  PK+ FT  ++HPNI  +G +C+ IL +    
Sbjct: 70  -------------------------PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDD 104
Query: 118 ---------QWSPALTISK 127
                    +WSP  ++ K
Sbjct: 105 PMGYESSAERWSPVQSVEK 123

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 41/139 (29%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
           K    E + L  +PP    AGP+ ++  F W+A IMGP D+ ++ GVF   + FP DY  
Sbjct: 10  KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY-- 67
Query: 62  XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS---- 117
                                    PL  PK+ FT  ++HPNI  +G +C+ IL +    
Sbjct: 68  -------------------------PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDD 102
Query: 118 ---------QWSPALTISK 127
                    +WSP  ++ K
Sbjct: 103 PMGYESSAERWSPVQSVEK 121

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 31/125 (24%)
Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
           ++EL  L  +PP   +     D +   +A I+G  ++PY+ GVF L +  P         
Sbjct: 10  KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIP--------- 60
Query: 66  XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL----RSQWSP 121
                              +YP + P++ F T IYHPNI+S G ICLD+L    +  W P
Sbjct: 61  ------------------ERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRP 102
Query: 122 ALTIS 126
           +L I+
Sbjct: 103 SLNIA 107

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 34/133 (25%)
Query: 2   KKNKQKELQDLGRDPP-----AQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFP 56
           K   Q+E +   RD P       C +   G DL +W+  I G P + ++GG++ LT+ FP
Sbjct: 12  KTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFP 71
Query: 57  TDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR 116
            +Y                           P + PK  FT  ++HPN+  +G++CL IL 
Sbjct: 72  EEY---------------------------PTRPPKCRFTPPLFHPNVYPSGTVCLSILN 104
Query: 117 SQ--WSPALTISK 127
            +  W PA+TI +
Sbjct: 105 EEEGWKPAITIKQ 117

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 27/118 (22%)
Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
           K  Q+EL  L        SA P  D+LF W  TI G   + Y+   + L++ FP+ Y   
Sbjct: 33  KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY--- 89
Query: 63  XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
                                   P   P V F T  YHPN+++ G+I LDIL+ +WS
Sbjct: 90  ------------------------PYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWS 123

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 30/118 (25%)
Query: 7   KELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
           KEL+DL + PP         D ++  W A ++ P   PY    F L I FP +       
Sbjct: 8   KELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE------- 59
Query: 66  XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPA 122
                               YP K P + FTT+IYHPN++ NG ICL I+ S+ W P 
Sbjct: 60  --------------------YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPC 97

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 30/118 (25%)
Query: 7   KELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
           KEL+DL + PP         D ++  W A ++ P   PY    F L I FP +       
Sbjct: 11  KELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE------- 62
Query: 66  XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPA 122
                               YP K P + FTT+IYHPN++ NG ICL I+ S+ W P 
Sbjct: 63  --------------------YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPC 100

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 54/129 (41%), Gaps = 31/129 (24%)
Query: 1   MKKNKQKELQDLGRDPP--AQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTD 58
           M+K  QKEL  L  DPP     +   V + +  W   + G P + Y+G  F L   F   
Sbjct: 23  MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF--- 79
Query: 59  YXXXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRI--YHPNINSNGSICLDILR 116
                                   S +YP   P+V FT      HP++ SNG ICL IL 
Sbjct: 80  ------------------------SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT 115
Query: 117 SQWSPALTI 125
             WSPAL++
Sbjct: 116 EDWSPALSV 124

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 29/96 (30%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L  WQ  I+ P + PY  G F + I+FP +Y                           P
Sbjct: 33  NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY---------------------------P 64
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPA 122
            K PK+ F T+IYHPNI+  G +CL ++ ++ W PA
Sbjct: 65  FKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 100

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 29/96 (30%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L  WQ  I+ P + PY  G F + I+FP +Y                           P
Sbjct: 31  NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY---------------------------P 62
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPA 122
            K PK+ F T+IYHPNI+  G +CL ++ ++ W PA
Sbjct: 63  FKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 98

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 34/129 (26%)
Query: 6   QKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYX 60
           Q+E +   +D P    A PV       DL  W+A I G   + + GGV+ +T+ +P +Y 
Sbjct: 12  QEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEY- 70
Query: 61  XXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--Q 118
                                     P K PKV F    YHPN+  +G+ICL IL     
Sbjct: 71  --------------------------PSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD 104
Query: 119 WSPALTISK 127
           W PA+T+ +
Sbjct: 105 WRPAITLKQ 113

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 34/129 (26%)
Query: 6   QKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYX 60
           Q+E +   +D P    A PV       DL  W+A I G   + + GGV+ +T+ +P +Y 
Sbjct: 10  QEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEY- 68
Query: 61  XXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--Q 118
                                     P K PKV F    YHPN+  +G+ICL IL     
Sbjct: 69  --------------------------PSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD 102
Query: 119 WSPALTISK 127
           W PA+T+ +
Sbjct: 103 WRPAITLKQ 111

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 28/109 (25%)
Query: 8   ELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           EL+ L  +P        V + DL++W+  I GPP++ Y+GG F   + FP D        
Sbjct: 12  ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID-------- 63
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL 115
                              YP   P   F T+++HPNI   G +C+ IL
Sbjct: 64  -------------------YPYSPPAFRFLTKMWHPNIYETGDVCISIL 93

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 28/109 (25%)
Query: 8   ELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
           EL+ L  +P        V + DL++W+  I GPP++ Y+GG F   + FP D        
Sbjct: 15  ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID-------- 66
Query: 67  XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL 115
                              YP   P   F T+++HPNI   G +C+ IL
Sbjct: 67  -------------------YPYSPPAFRFLTKMWHPNIYETGDVCISIL 96

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 81  KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTIS 126
           KV + YP   PKV   T +YHPNI+  G++CL+ILR  W P LTI+
Sbjct: 58  KVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTIN 103

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 86  YPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
           YP++ PKV    +I+HPNI+  G++CL+ILR  WSPAL +
Sbjct: 92  YPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDL 131

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 81  KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTIS 126
           KV + YP   PKV   T +YHPNI+  G++ L+ILR  W P LTI+
Sbjct: 78  KVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTIN 123

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 30/128 (23%)
Query: 1   MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYX 60
           ++ N+++E+ D  R   +     P  D +  +     GP  +PY+ G + L +  P+D  
Sbjct: 11  LRSNRRREM-DYMRLCNSTRKVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSD-- 66
Query: 61  XXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQW 119
                                    YP K P + F  RI HPN++  +GS+CLD++   W
Sbjct: 67  -------------------------YPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTW 101
Query: 120 SPALTISK 127
           +P   +  
Sbjct: 102 TPMYQLEN 109

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
           QKEL +   +PP  C+     +++  W    +G  ++ Y   V+ L I FP D       
Sbjct: 12  QKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDD------- 64
Query: 66  XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                  YPLK P V   +K P             H ++ SNG ICL +L   ++P+L+I
Sbjct: 65  -------YPLKPPIVYFLQKPP------------KHTHVYSNGDICLSLLGDDYNPSLSI 105
Query: 126 S 126
           S
Sbjct: 106 S 106

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  DY                           P
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 72
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++CL IL     W PA+TI +
Sbjct: 73  SSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQ 114

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  DY                           P
Sbjct: 38  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 70
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++CL IL     W PA+TI +
Sbjct: 71  SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 112

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  DY                           P
Sbjct: 39  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 71
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++CL IL     W PA+TI +
Sbjct: 72  SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 113

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  DY                           P
Sbjct: 42  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 74
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++CL IL     W PA+TI +
Sbjct: 75  SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 116

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  DY                           P
Sbjct: 39  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 71
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++CL IL     W PA+TI +
Sbjct: 72  SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 113

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  DY                           P
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 72
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++CL IL     W PA+TI +
Sbjct: 73  SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 114

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  DY                           P
Sbjct: 37  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 69
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++CL IL     W PA+TI +
Sbjct: 70  SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 111

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  DY                           P
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 72
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++CL IL     W PA+TI +
Sbjct: 73  SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 114

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  DY                           P
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 72
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++CL IL     W PA+TI +
Sbjct: 73  SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 114

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
           QKEL +  ++PP  C+      ++  W    +G  ++ Y   V+ + I FP +Y      
Sbjct: 26  QKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNY------ 79
Query: 66  XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                   PLK P V   +K P             H ++ SNG ICL +L   ++P+L+I
Sbjct: 80  --------PLKPPIVYFLQKPP------------KHTHVYSNGDICLSVLGDDYNPSLSI 119
Query: 126 S 126
           S
Sbjct: 120 S 120

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 28/84 (33%)
Query: 38  GPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTT 97
           GP  +PY+GGV+ + +  P                            KYP K P + F  
Sbjct: 59  GPQGTPYEGGVWKVRVDLPD---------------------------KYPFKSPSIGFMN 91
Query: 98  RIYHPNIN-SNGSICLDILRSQWS 120
           +I+HPNI+ ++G++CLD++   W+
Sbjct: 92  KIFHPNIDEASGTVCLDVINQTWT 115

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 30/124 (24%)
Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
            ++  DL  +     +A PV +D+  W+  I G  +S +QG VF LTIHF ++Y      
Sbjct: 29  HRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAP-- 86
Query: 66  XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRS--QWSPA 122
                                    P V F T  +HPN++   G  C+D L +  +W+  
Sbjct: 87  -------------------------PVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTN 121
Query: 123 LTIS 126
            T+S
Sbjct: 122 YTLS 125

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  DY                           P
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 72
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HP +  +G++CL IL     W PA+TI +
Sbjct: 73  SSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQ 114

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 31/106 (29%)
Query: 21  SAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPK 79
           S  P+ + DL  W+A I GP D+PY+   F + I  P+                      
Sbjct: 38  SLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPS---------------------- 75
Query: 80  VKVSRKYPLKLPKVAFT-TRIYHPNINS-NGSICLDILR-SQWSPA 122
                 YP+  PK++F    I H N+ S  G ICL+IL+  +W+P 
Sbjct: 76  -----SYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPV 116

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 31/106 (29%)
Query: 21  SAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPK 79
           S  P+ + DL  W+A I GP D+PY+   F + I  P+                      
Sbjct: 38  SLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPS---------------------- 75
Query: 80  VKVSRKYPLKLPKVAFT-TRIYHPNINS-NGSICLDILR-SQWSPA 122
                 YP+  PK++F    I H N+ S  G ICL+IL+  +W+P 
Sbjct: 76  -----SYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPV 116

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 31/106 (29%)
Query: 21  SAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPK 79
           S  P+ + DL  W+A I GP D+PY+   F + I  P+                      
Sbjct: 38  SLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPS---------------------- 75
Query: 80  VKVSRKYPLKLPKVAFT-TRIYHPNINS-NGSICLDILR-SQWSPA 122
                 YP+  PK++F    I H N+ S  G ICL+IL+  +W+P 
Sbjct: 76  -----SYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPV 116

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  D                           YP
Sbjct: 37  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDD---------------------------YP 69
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++ L IL     W PA+TI +
Sbjct: 70  SSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQ 111

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 29/102 (28%)
Query: 28  DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
           +L +W+  I G   +P++GG+F L + F  D                           YP
Sbjct: 37  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDD---------------------------YP 69
Query: 88  LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
              PK  F   ++HPN+  +G++ L IL     W PA+TI +
Sbjct: 70  SSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQ 111

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 34/100 (34%)
Query: 27  DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKY 86
           D +FH      GP  + Y+GG++ + +  P DY                           
Sbjct: 32  DVMFH------GPNGTAYEGGIWKVHVTLPDDY--------------------------- 58
Query: 87  PLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTI 125
           P   P + F  ++ HPN++ ++GS+CLD++   W+P  ++
Sbjct: 59  PFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSL 98

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 35/126 (27%)
Query: 7   KELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
           KE+ +L  + P  C    P  + L  +Q T+  P +  YQGG F                
Sbjct: 21  KEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKF---------------- 63
Query: 66  XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ------W 119
                      Q + +V   Y +  PKV   T+I+HPNI   G ICL +LR        W
Sbjct: 64  -----------QFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112
Query: 120 SPALTI 125
           +P  T+
Sbjct: 113 APTRTL 118

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 35/126 (27%)
Query: 7   KELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
           KE+ +L  + P  C    P  + L  +Q T+  P +  YQGG F                
Sbjct: 21  KEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKF---------------- 63
Query: 66  XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ------W 119
                      Q + +V   Y +  PKV   T+I+HPNI   G ICL +LR        W
Sbjct: 64  -----------QFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112
Query: 120 SPALTI 125
           +P  T+
Sbjct: 113 APTRTL 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	3e-63
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	7e-62
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	1e-60
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	1e-60
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-59
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	4e-59
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	6e-59
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	8e-59
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	8e-59
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	3e-58
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	7e-58
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	1e-56
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	1e-56
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	1e-56
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	2e-55
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	6e-55
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	1e-54
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	2e-54
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	5e-54
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	4e-53
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	7e-53
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	7e-53
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	1e-52
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	1e-52
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	3e-52
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	3e-52
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	4e-52
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	6e-52
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	7e-52
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	2e-51
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	1e-50
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	1e-49
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	3e-48
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-47
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-47
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	4e-47
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	5e-47
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	7e-47
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	9e-47
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	1e-46
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	4e-46
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	6e-46
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	9e-46
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	1e-45
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	4e-45
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	4e-43
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	6e-43
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	1e-41
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	1e-33
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	2e-33

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  197 bits (501), Expect = 3e-63
 Identities = 89/122 (72%), Positives = 90/122 (73%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFKP  
Sbjct: 9   HKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP-- 66

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PKVAFTTRIYHPNINSNGSI LDILRSQWSPALTI
Sbjct: 67  -------------------------PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTI 101

Query: 126 SK 127
           SK
Sbjct: 102 SK 103

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  185 bits (472), Expect = 7e-62
 Identities = 94/122 (77%), Positives = 95/122 (77%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDYPFKP  
Sbjct: 10  QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP-- 67

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI
Sbjct: 68  -------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 102

Query: 126 SK 127
           SK
Sbjct: 103 SK 104

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  182 bits (465), Expect = 1e-60
 Identities = 90/122 (73%), Positives = 91/122 (74%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFKP  
Sbjct: 25  HKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP-- 82

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI
Sbjct: 83  -------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 117

Query: 126 SK 127
           SK
Sbjct: 118 SK 119

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  182 bits (464), Expect = 1e-60
 Identities = 78/122 (63%), Positives = 84/122 (68%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KEL DL +DPP  CSAGPVGDD+FHWQATIMGP DSPY GGVFFL IHFP+DYPFKP  
Sbjct: 27  NKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP-- 84

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PKV FTT+IYHPNINS G+ICLDIL+ QWSPALTI
Sbjct: 85  -------------------------PKVNFTTKIYHPNINSQGAICLDILKDQWSPALTI 119

Query: 126 SK 127
           SK
Sbjct: 120 SK 121

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  180 bits (458), Expect = 2e-59
 Identities = 65/122 (53%), Positives = 75/122 (61%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QKEL D+  DPP  CSAGP GD+++ W++TI+GPP S Y+GGVFFL I F  +YPFKP  
Sbjct: 54  QKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKP-- 111

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PKV F TRIYH NINS G ICLDIL+  WSPALTI
Sbjct: 112 -------------------------PKVTFRTRIYHCNINSQGVICLDILKDNWSPALTI 146

Query: 126 SK 127
           SK
Sbjct: 147 SK 148

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  178 bits (453), Expect = 4e-59
 Identities = 46/122 (37%), Positives = 60/122 (49%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KE Q+L  +PP    A PV ++  H+   I GP  +PY+GG + L +  P  YP +P  
Sbjct: 7   TKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP-- 64

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I
Sbjct: 65  -------------------------PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99

Query: 126 SK 127
             
Sbjct: 100 RT 101

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  178 bits (453), Expect = 6e-59
 Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KE+  L  DPP      P  +DL   Q TI GP  +PY GG+F + +    D+P  P  
Sbjct: 19  YKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASP-- 76

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PK  F T+I+HPN+ +NG IC+++L+  W+  L I
Sbjct: 77  -------------------------PKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGI 111

Query: 126 SK 127
             
Sbjct: 112 RH 113

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  177 bits (452), Expect = 8e-59
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           Q+EL+ L        +A P GD+LF W AT+ GP D+ Y+   + LT+ FP+DYP+KP  
Sbjct: 15  QQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKP-- 72

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    P V FTT  +HPN++ +G+ICLDIL+  W+ +  +
Sbjct: 73  -------------------------PVVKFTTPCWHPNVDQSGNICLDILKENWTASYDV 107

Query: 126 SK 127
             
Sbjct: 108 RT 109

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  177 bits (452), Expect = 8e-59
 Identities = 47/122 (38%), Positives = 62/122 (50%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KE + L  DP    +A P  D+L ++Q TI GP  SPY+ G+F L ++ P DYP +   
Sbjct: 11  IKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA-- 68

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PKV F T+IYHPNI+  G ICLD+L++ WSPAL I
Sbjct: 69  -------------------------PKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI 103

Query: 126 SK 127
             
Sbjct: 104 RT 105

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  176 bits (448), Expect = 3e-58
 Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KE Q L  +P     A P   +  ++   I GP DSP++GG F L +  P +YP     
Sbjct: 11  IKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA-- 68

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PKV F T+IYHPN++  G ICLDIL+ +WSPAL I
Sbjct: 69  -------------------------PKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 103

Query: 126 SK 127
             
Sbjct: 104 RT 105

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  175 bits (445), Expect = 7e-58
 Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            ++ + L +DPPA  S  P  +++  W A I GP D+P+ GG F L++ F  DYP KP  
Sbjct: 10  MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKP-- 67

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    P V F +R++HPNI ++GSICLDIL++QWSP   +
Sbjct: 68  -------------------------PTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDV 102

Query: 126 SK 127
           + 
Sbjct: 103 AA 104

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  174 bits (443), Expect = 1e-56
 Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 28/123 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QKEL+D+  +   +  A     + F W   I GP  +PY+GG F L I  P DYP+ P  
Sbjct: 29  QKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP-- 86

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSICLDILRSQWSPALT 124
                                    PK+ F T+I+HPNI+S  G+ICLD+L+++WSPALT
Sbjct: 87  -------------------------PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALT 121

Query: 125 ISK 127
           I  
Sbjct: 122 IRT 124

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  172 bits (438), Expect = 1e-56
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            ++ + +  D P   SA P+ D++  W A I+GP D+PY+ G F L + F  +YP KP  
Sbjct: 10  MRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP-- 67

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    P V F + ++HPN+ +NG ICLDIL+++W+P   +
Sbjct: 68  -------------------------PHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDV 102

Query: 126 SK 127
           + 
Sbjct: 103 AS 104

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  172 bits (439), Expect = 1e-56
 Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           Q+EL  L        SA P  D+LF W  TI G   + Y+   + L++ FP+ YP+    
Sbjct: 36  QQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNA-- 93

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    P V F T  YHPN+++ G+I LDIL+ +WS    +
Sbjct: 94  -------------------------PTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDV 128

Query: 126 SK 127
             
Sbjct: 129 RT 130

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  168 bits (429), Expect = 2e-55
 Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 29/124 (23%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            KE+Q +  DP A  +   V + D+ H + T +GPP +PY+GG F + I  P +YPFKP 
Sbjct: 7   MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKP- 65

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPAL 123
                                     PK+ F T++YHPNI+S  G+ICLDIL++ WSP +
Sbjct: 66  --------------------------PKMQFDTKVYHPNISSVTGAICLDILKNAWSPVI 99

Query: 124 TISK 127
           T+  
Sbjct: 100 TLKS 103

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  169 bits (431), Expect = 6e-55
 Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 29/124 (23%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            KE+Q +  DP A  +   V + D+ H + T +GPP +PY+GG F + I  P +YPFKP 
Sbjct: 8   MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKP- 66

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPAL 123
                                     PK+ F T++YHPNI+S  G+ICLDILR+ WSP +
Sbjct: 67  --------------------------PKMQFDTKVYHPNISSVTGAICLDILRNAWSPVI 100

Query: 124 TISK 127
           T+  
Sbjct: 101 TLKS 104

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  166 bits (422), Expect = 1e-54
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 28/123 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QKEL +  ++PP  C+      ++  W    +G  ++ Y   V+ + I FP +YP KP  
Sbjct: 26  QKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP-- 83

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTR-IYHPNINSNGSICLDILRSQWSPALT 124
                                    P V F  +   H ++ SNG ICL +L   ++P+L+
Sbjct: 84  -------------------------PIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLS 118

Query: 125 ISK 127
           IS 
Sbjct: 119 ISG 121

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  165 bits (421), Expect = 2e-54
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 28/123 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QKEL +   +PP  C+     +++  W    +G  ++ Y   V+ L I FP DYP KP  
Sbjct: 12  QKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP-- 69

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTR-IYHPNINSNGSICLDILRSQWSPALT 124
                                    P V F  +   H ++ SNG ICL +L   ++P+L+
Sbjct: 70  -------------------------PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLS 104

Query: 125 ISK 127
           IS 
Sbjct: 105 ISG 107

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  166 bits (422), Expect = 5e-54
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 31/126 (24%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           ++EL  L  +PP   +     D +   +A I+G  ++PY+ GVF L +  P  YPF+P  
Sbjct: 10  KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP-- 67

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL----RSQWSP 121
                                    P++ F T IYHPNI+S G ICLD+L    +  W P
Sbjct: 68  -------------------------PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRP 102

Query: 122 ALTISK 127
           +L I+ 
Sbjct: 103 SLNIAT 108

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  163 bits (415), Expect = 4e-53
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 31/126 (24%)

Query: 6   QKELQDLGRDPPA---QCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           ++E +++ +       Q     V ++    +  I GPPD+PY+GG + L I  P  YPF 
Sbjct: 14  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 73

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
           P                           PKV F T+I+HPNI+S  G+ICLDIL+ QW+ 
Sbjct: 74  P---------------------------PKVRFITKIWHPNISSVTGAICLDILKDQWAA 106

Query: 122 ALTISK 127
           A+T+  
Sbjct: 107 AMTLRT 112

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  164 bits (417), Expect = 7e-53
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 31/126 (24%)

Query: 6   QKELQDLGR---DPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           ++E +++ +       Q     V ++    +  I GPPD+PY+GG + L I  P  YPF 
Sbjct: 11  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 70

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
           P                           PKV F T+I+HPNI+S  G+ICLDIL+ QW+ 
Sbjct: 71  P---------------------------PKVRFITKIWHPNISSVTGAICLDILKDQWAA 103

Query: 122 ALTISK 127
           A+T+  
Sbjct: 104 AMTLRT 109

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  162 bits (413), Expect = 7e-53
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 30/124 (24%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            KEL+++ +          V + +L  WQ  I  P + PY  G F + I+FP +YPFKP 
Sbjct: 8   MKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKP- 65

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS-QWSPAL 123
                                     PK+ F T+IYHPNI+  G +CL ++ +  W PA 
Sbjct: 66  --------------------------PKITFKTKIYHPNIDEKGQVCLPVISAENWKPAT 99

Query: 124 TISK 127
              +
Sbjct: 100 KTDQ 103

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  162 bits (412), Expect = 1e-52
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 28/124 (22%)

Query: 5   KQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
             ++  D  +   A             +     GP  + Y+GG++ + +  P DYPF   
Sbjct: 4   LTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFAS- 62

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPAL 123
                                     P + F  ++ HPN++ ++GS+CLD++   W+P  
Sbjct: 63  --------------------------PSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLY 96

Query: 124 TISK 127
           ++  
Sbjct: 97  SLVN 100

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  161 bits (410), Expect = 1e-52
 Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 31/126 (24%)

Query: 6   QKELQDLGRDPPAQCSAGP--VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKP 63
           QKEL  L  DPP   +     V + +  W   + G P + Y+G  F L   F + YPF  
Sbjct: 28  QKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDS 87

Query: 64  PKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTR--IYHPNINSNGSICLDILRSQWSP 121
                                      P+V FT      HP++ SNG ICL IL   WSP
Sbjct: 88  ---------------------------PQVMFTGENIPVHPHVYSNGHICLSILTEDWSP 120

Query: 122 ALTISK 127
           AL++  
Sbjct: 121 ALSVQS 126

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  161 bits (409), Expect = 3e-52
 Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 30/124 (24%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            KEL+DL + PP         D ++  W A +  P   PY    F L I FP +YPFKP 
Sbjct: 10  VKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKP- 67

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPAL 123
                                     P + FTT+IYHPN++ NG ICL I+ S+ W P  
Sbjct: 68  --------------------------PMIKFTTKIYHPNVDENGQICLPIISSENWKPCT 101

Query: 124 TISK 127
              +
Sbjct: 102 KTCQ 105

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  161 bits (409), Expect = 3e-52
 Identities = 33/128 (25%), Positives = 44/128 (34%), Gaps = 33/128 (25%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KE+ +L  + P  C       +  H     + P +  YQGG F      P  Y   P  
Sbjct: 20  VKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVP-- 77

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ------W 119
                                    PKV   T+I+HPNI   G ICL +LR        W
Sbjct: 78  -------------------------PKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112

Query: 120 SPALTISK 127
           +P  T+  
Sbjct: 113 APTRTLKD 120

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  161 bits (409), Expect = 4e-52
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 30/125 (24%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            ++  DL  +     +A PV +D+  W+  I G  +S +QG VF LTIHF ++Y + P  
Sbjct: 29  HRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAP-- 86

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSICLDILRS--QWSPA 122
                                    P V F T  +HPN++ + G  C+D L +  +W+  
Sbjct: 87  -------------------------PVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTN 121

Query: 123 LTISK 127
            T+S 
Sbjct: 122 YTLSS 126

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  160 bits (407), Expect = 6e-52
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 34/129 (26%)

Query: 6   QKELQDLGRDPPAQCSAGPV-----GDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
           Q+E +   RD P    A P      G DL +W+  I G P + ++GG++ LT+ FP +YP
Sbjct: 16  QEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYP 75

Query: 61  FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-- 118
            +P                           PK  FT  ++HPN+  +G++CL IL  +  
Sbjct: 76  TRP---------------------------PKCRFTPPLFHPNVYPSGTVCLSILNEEEG 108

Query: 119 WSPALTISK 127
           W PA+TI +
Sbjct: 109 WKPAITIKQ 117

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  161 bits (409), Expect = 7e-52
 Identities = 49/136 (36%), Positives = 63/136 (46%), Gaps = 41/136 (30%)

Query: 6   QKELQDLGR-------------DPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLT 52
            KEL D+ +                   SA  VG D+  W+  I GP  +PY+GG F L 
Sbjct: 38  LKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLD 97

Query: 53  IHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSIC 111
           I  P DYP+ P                           PK+ F T+I+HPNI+S  G+IC
Sbjct: 98  IVIPPDYPYNP---------------------------PKMKFVTKIWHPNISSQTGAIC 130

Query: 112 LDILRSQWSPALTISK 127
           LDIL+ +WSPALTI  
Sbjct: 131 LDILKHEWSPALTIRT 146

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  158 bits (403), Expect = 2e-51
 Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 34/129 (26%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
           Q+E +   +D P    A PV       DL  W+A I G   + + GGV+ +T+ +P +YP
Sbjct: 10  QEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYP 69

Query: 61  FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR--SQ 118
            KP                           PKV F    YHPN+  +G+ICL IL     
Sbjct: 70  SKP---------------------------PKVKFPAGFYHPNVYPSGTICLSILNEDQD 102

Query: 119 WSPALTISK 127
           W PA+T+ +
Sbjct: 103 WRPAITLKQ 111

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  157 bits (398), Expect = 1e-50
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 34/129 (26%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
            +E +   +D P    A P  +     +L +W+  I G   +P++GG+F L + F  DYP
Sbjct: 13  AQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYP 72

Query: 61  FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--Q 118
             P                           PK  F   ++HPN+  +G++CL IL     
Sbjct: 73  SSP---------------------------PKCKFEPPLFHPNVYPSGTVCLSILEEDKD 105

Query: 119 WSPALTISK 127
           W PA+TI +
Sbjct: 106 WRPAITIKQ 114

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  157 bits (399), Expect = 1e-49
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 31/126 (24%)

Query: 6   QKELQDLGRDPPA---QCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           ++E +++ +       Q     V ++    +  I GPPD+PY+GG + L I  P  YPF 
Sbjct: 63  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 122

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
           P                           PKV F T+I+HPNI+S  G+ICLDIL+ QW+ 
Sbjct: 123 P---------------------------PKVRFITKIWHPNISSVTGAICLDILKDQWAA 155

Query: 122 ALTISK 127
           A+T+  
Sbjct: 156 AMTLRT 161

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  152 bits (385), Expect = 3e-48
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 31/126 (24%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQA----TIMGPPDSPYQGGVFFLTIHFPTDYPF 61
           +++L  L   P    +     D     Q+     I+ P +  Y  G     + F   YP 
Sbjct: 35  KRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPI 94

Query: 62  KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
           +PPK                           V    +I+HPNI+  G++CL+ILR  WSP
Sbjct: 95  EPPK---------------------------VVCLKKIFHPNIDLKGNVCLNILREDWSP 127

Query: 122 ALTISK 127
           AL +  
Sbjct: 128 ALDLQS 133

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  149 bits (379), Expect = 1e-47
 Identities = 47/136 (34%), Positives = 59/136 (43%), Gaps = 41/136 (30%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            KELQ L +D P    AGP  + ++F W   I GPPD+PY  GVF   + FP DYP  P 
Sbjct: 10  LKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSP- 68

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------- 117
                                     PK+ FT  I HPNI  NG +C+ IL S       
Sbjct: 69  --------------------------PKLTFTPSILHPNIYPNGEVCISILHSPGDDPNM 102

Query: 118 ------QWSPALTISK 127
                 +WSP  ++ K
Sbjct: 103 YELAEERWSPVQSVEK 118

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  149 bits (378), Expect = 2e-47
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 41/136 (30%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
           +++L +L ++P    SAG + D DL+ W+  I+GPPD+ Y+GGVF   + FP DYP +P 
Sbjct: 23  RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP- 81

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL--------- 115
                                     PK+ F T I+HPN++ NG +C+ IL         
Sbjct: 82  --------------------------PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYG 115

Query: 116 ----RSQWSPALTISK 127
                 +W P  T+  
Sbjct: 116 YEKPEERWLPIHTVET 131

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  149 bits (377), Expect = 4e-47
 Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 29/122 (23%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QK++ +L        S     DDL +++  I  P +  Y+ G F  +      YP  PPK
Sbjct: 32  QKDINELNLPKTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPK 89

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                      V   T +YHPNI+  G++ L+ILR  W P LTI
Sbjct: 90  ---------------------------VKCETMVYHPNIDLEGNVALNILREDWKPVLTI 122

Query: 126 SK 127
           + 
Sbjct: 123 NS 124

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  148 bits (375), Expect = 5e-47
 Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 41/136 (30%)

Query: 6   QKELQDLGRD----PPAQCSAGPVG--------DDLFHWQATIMGPPDSPY--QGGVFFL 51
            K+L+ L  +      A  S  P          D +++W   +  P DS Y   G  + L
Sbjct: 14  IKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQL 73

Query: 52  TIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSIC 111
           ++ F  DYP +PP                            V F T +Y P +   G IC
Sbjct: 74  SVLFSDDYPHEPPT---------------------------VRFVTPVYSPLVTGEGGIC 106

Query: 112 LDILRSQWSPALTISK 127
             ++   W+P    S 
Sbjct: 107 DRMVNDFWTPDQHASD 122

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  148 bits (375), Expect = 7e-47
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 32/123 (26%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
             ++  L                L  +     GP  +PY+GGV+ + +  P  YPFK   
Sbjct: 31  DTDVIKLIESKHEVTIL----GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKS-- 84

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALT 124
                                    P + F  +I+HPNI+ ++G++CLD++   W+    
Sbjct: 85  -------------------------PSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYD 119

Query: 125 ISK 127
           ++ 
Sbjct: 120 LTN 122

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  147 bits (373), Expect = 9e-47
 Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 29/122 (23%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QK++ +L        S     DDL +++  I  P +  Y+ G F  +      YP  PPK
Sbjct: 12  QKDINELNLPKTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPK 69

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                      V   T +YHPNI+  G++CL+ILR  W P LTI
Sbjct: 70  ---------------------------VKCETMVYHPNIDLEGNVCLNILREDWKPVLTI 102

Query: 126 SK 127
           + 
Sbjct: 103 NS 104

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  147 bits (373), Expect = 1e-46
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 41/136 (30%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
             E + L  +PP    AGP+ ++  F W+A IMGP D+ ++ GVF   + FP DYP  P 
Sbjct: 9   MAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSP- 67

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------- 117
                                     PK+ FT  ++HPNI  +G +C+ IL +       
Sbjct: 68  --------------------------PKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMG 101

Query: 118 ------QWSPALTISK 127
                 +WSP  ++ K
Sbjct: 102 YESSAERWSPVQSVEK 117

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  146 bits (371), Expect = 4e-46
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 28/123 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           +++   + +DP     A P+  ++  W   + GP  +PY+GG +   + FP ++PFKP  
Sbjct: 20  KQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP-- 77

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSICLDILRSQWSPALT 124
                                    P +   T       N+       D     W+PA +
Sbjct: 78  -------------------------PSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWS 112

Query: 125 ISK 127
           +S 
Sbjct: 113 VST 115

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  144 bits (365), Expect = 6e-46
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 33/128 (25%)

Query: 6   QKELQDLGRD-PPAQCSAGPVGDD---LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
            +EL+   +   P  CS G    D   +  W  TI+GPP S ++  ++ L+I    +YP 
Sbjct: 12  LEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPD 71

Query: 62  KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRS-QW 119
            P                           PKV F ++I  P +N + G +  D      W
Sbjct: 72  SP---------------------------PKVTFISKINLPCVNPTTGEVQTDFHTLRDW 104

Query: 120 SPALTISK 127
             A T+  
Sbjct: 105 KRAYTMET 112

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  144 bits (366), Expect = 9e-46
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 36/130 (27%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
            +EL++  +       +  + DD    L  W   I+GPP + Y+  ++ L I     YP 
Sbjct: 31  LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 90

Query: 62  KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI----CLDILRS 117
            P                           P V F T+I    +NS+  +     + +L  
Sbjct: 91  AP---------------------------PFVRFVTKINMNGVNSSNGVVDPRAISVLA- 122

Query: 118 QWSPALTISK 127
           +W  + +I  
Sbjct: 123 KWQNSYSIKV 132

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  145 bits (367), Expect = 1e-45
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 41/136 (30%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
             EL+ L  +P        V + DL++W+  I GPP++ Y+GG F   + FP DYP+ P 
Sbjct: 13  LLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSP- 71

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------- 117
                                     P   F T+++HPNI   G +C+ IL         
Sbjct: 72  --------------------------PAFRFLTKMWHPNIYETGDVCISILHPPVDDPQS 105

Query: 118 ------QWSPALTISK 127
                 +W+P   +  
Sbjct: 106 GELPSERWNPTQNVRT 121

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  143 bits (363), Expect = 4e-45
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 29/124 (23%)

Query: 5   KQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            ++   D  R   +     P  D +  +     GP  +PY+ G + L +  P+DYPFK  
Sbjct: 14  NRRREMDYMRLCNSTRKVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS- 71

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPAL 123
                                     P + F  RI HPN++  +GS+CLD++   W+P  
Sbjct: 72  --------------------------PSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105

Query: 124 TISK 127
            +  
Sbjct: 106 QLEN 109

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  138 bits (350), Expect = 4e-43
 Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 42/137 (30%)

Query: 6   QKELQDLGRDPPAQ-----------CSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTI 53
            KE + + +   +             S  P+ + DL  W+A I GP D+PY+   F + I
Sbjct: 12  VKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILI 71

Query: 54  HFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAF-TTRIYHPNINS-NGSIC 111
             P+ YP  P                           PK++F    I H N+ S  G IC
Sbjct: 72  EVPSSYPMNP---------------------------PKISFMQNNILHCNVKSATGEIC 104

Query: 112 LDILRS-QWSPALTISK 127
           L+IL+  +W+P   +  
Sbjct: 105 LNILKPEEWTPVWDLLH 121

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  137 bits (348), Expect = 6e-43
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 36/130 (27%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
            +EL++  +       +  + DD    L  W   I+GPP + Y+  ++ L I     YP 
Sbjct: 41  LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 100

Query: 62  KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI----CLDILRS 117
            P                           P V F T+I    +NS+  +     + +L  
Sbjct: 101 AP---------------------------PFVRFVTKINMNGVNSSNGVVDPRAISVLA- 132

Query: 118 QWSPALTISK 127
           +W  + +I  
Sbjct: 133 KWQNSYSIKV 142

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  134 bits (338), Expect = 1e-41
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 33/128 (25%)

Query: 6   QKELQDLGRDPPAQ-CSAGPVGDD---LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
             EL+   +   ++  S G    D   L +W  TI G P + ++  ++ LTI    +YP 
Sbjct: 27  LDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPD 86

Query: 62  KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL--RSQW 119
            P                           P V F T+I    +++ G +  + L     W
Sbjct: 87  SP---------------------------PTVKFDTKIEMSCVDNCGRVIKNNLHILKNW 119

Query: 120 SPALTISK 127
           +   TI  
Sbjct: 120 NRNYTIET 127

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score =  115 bits (288), Expect = 1e-33
 Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 44/139 (31%)

Query: 6   QKELQDLGRDPPAQC---SAGPVGDDLFHWQATIMG-PPDSPYQGGV-----------FF 50
            KEL+D+ R    +    S   + D L+ W   +    PDSP    +             
Sbjct: 33  MKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYIL 92

Query: 51  LTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPN-INSNGS 109
           L   F  ++PF P                           P V     +     +   G+
Sbjct: 93  LNFSFKDNFPFDP---------------------------PFVRVVLPVLSGGYVLGGGA 125

Query: 110 ICLDILRSQ-WSPALTISK 127
           +C+++L  Q WS A +I  
Sbjct: 126 LCMELLTKQGWSSAYSIES 144

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score =  117 bits (295), Expect = 2e-33
 Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 44/139 (31%)

Query: 6   QKELQDLGRDPPAQCSAGPV----GDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
            +E   L    P   S+        + L   +  I GP D+PY  G F   ++FP DYP 
Sbjct: 82  AQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPS 141

Query: 62  KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYH-----PNINSNGSICLDILR 116
            P                           P V   T   H     PN+ ++G +CL IL 
Sbjct: 142 SP---------------------------PLVNLETTGGHSVRFNPNLYNDGKVCLSILN 174

Query: 117 S-------QWSPAL-TISK 127
           +       +W+P   +  +
Sbjct: 175 TWHGRPEEKWNPQTSSFLQ 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.97
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.93
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.69
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.64
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.33
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	95.43
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	95.37
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	94.05
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	92.33
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	90.78
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	87.76

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=5.7e-39  Score=229.37  Aligned_cols=101  Identities=35%  Similarity=0.672  Sum_probs=96.7

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||                
T Consensus         7 a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP----------------   70 (125)
T 2fo3_A            7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPP----------------   70 (125)
T ss_dssp             --CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCC----------------
Confidence            3589999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeecc-ccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i-~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|++ +||||+++|+||+|+|+++|+|++||++|
T Consensus        71 -----------~v~f~t~i~~HPnv~~~G~iCl~iL~~~W~P~~~i~~v  108 (125)
T 2fo3_A           71 -----------IVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGL  108 (125)
T ss_dssp             -----------EEEECSSCCCBTTBCTTSBBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------EEEEeCCCCCCCcCCCCCEEEchhcCCCCCCCCcHHHH
Confidence                       99999996 99999999999999999999999999876

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.9e-38  Score=232.52  Aligned_cols=101  Identities=46%  Similarity=0.916  Sum_probs=98.4

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||                
T Consensus         2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP----------------   65 (149)
T 2r0j_A            2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPP----------------   65 (149)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCC----------------
Confidence            4699999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+.+|+||+|+|+++|+|++||++|
T Consensus        66 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v  102 (149)
T 2r0j_A           66 -----------KVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTV  102 (149)
T ss_dssp             -----------EEEECSCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHH
T ss_pred             -----------eeEeccCCccCCCCCCCEEechhcCCCCCCCCcHHHH
Confidence                       9999999999999999999999999999999999876

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.7e-38  Score=229.00  Aligned_cols=100  Identities=33%  Similarity=0.671  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||                 
T Consensus        22 ~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP-----------------   84 (136)
T 2h2y_A           22 NYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPP-----------------   84 (136)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCC-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeecc-ccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i-~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|++ +||||+.+|+||+|+|+++|+|++||++|
T Consensus        85 ----------~v~f~t~i~~HPnv~~~G~ICl~iL~~~WsP~~ti~~v  122 (136)
T 2h2y_A           85 ----------IVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGL  122 (136)
T ss_dssp             ----------EEEECSSCCCCTTBCTTCCBCCGGGTTTCCTTCCHHHH
T ss_pred             ----------EEEEeCCCCCCCcCCCCCEEECccccCCCCCCCcHHHH
Confidence                      99999996 99999999999999999999999999876

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=4.4e-38  Score=231.00  Aligned_cols=101  Identities=67%  Similarity=1.335  Sum_probs=98.3

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||                
T Consensus         5 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP----------------   68 (151)
T 4gpr_A            5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAP----------------   68 (151)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCC----------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcc----------------
Confidence            3699999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+++|+||+++|+++|+|++||++|
T Consensus        69 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v  105 (151)
T 4gpr_A           69 -----------RVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRV  105 (151)
T ss_dssp             -----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------eeEEecCcccceECCCCEEEcccccCCCCCCCcHHHH
Confidence                       9999999999999999999999999999999999876

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.4e-38  Score=228.98  Aligned_cols=100  Identities=40%  Similarity=0.784  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEE--EcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAG--PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~--p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      +|||+||+++|++++++|+.+.  +.++|+++|+++|.||+|||||||.|+++|.||++||++||               
T Consensus        24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP---------------   88 (136)
T 2a7l_A           24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSP---------------   88 (136)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCC---------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCC---------------
Confidence            4899999999999999999965  88899999999999999999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccc--cceecCCCcEEeccCCCCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIY--HPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~--HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                  +|+|.|+++  ||||+.+|+||+|+|+++|+|++||++|
T Consensus        89 ------------~v~F~T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~v  127 (136)
T 2a7l_A           89 ------------QVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSV  127 (136)
T ss_dssp             ------------EEEEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHH
T ss_pred             ------------EEEEeCCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHH
Confidence                        999999999  9999999999999999999999999876

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.1e-38  Score=232.59  Aligned_cols=101  Identities=43%  Similarity=0.815  Sum_probs=98.2

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                
T Consensus         6 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP----------------   69 (154)
T 2c2v_B            6 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP----------------   69 (154)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC----------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCC----------------
Confidence            4689999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|++|||||+.+|+||+|+|+++|+|++||++|
T Consensus        70 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v  106 (154)
T 2c2v_B           70 -----------KVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTV  106 (154)
T ss_dssp             -----------EEEECSCCCCTTBCTTCBBCCHHHHTSCCTTCCHHHH
T ss_pred             -----------EEEeecCcccCcCccCCeEEchhccCCCCCCCcHHHH
Confidence                       9999999999999999999999999999999999876

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=5.6e-38  Score=230.02  Aligned_cols=100  Identities=95%  Similarity=1.575  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||                 
T Consensus         6 ~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP-----------------   68 (150)
T 1z2u_A            6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPP-----------------   68 (150)
T ss_dssp             HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCc-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|+++||||+.+|+||+++|+++|+|++||++|
T Consensus        69 ----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v  105 (150)
T 1z2u_A           69 ----------KVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKV  105 (150)
T ss_dssp             ----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             ----------EEEEecCcccCcCCCCCeEeeccccCCCCCCCCHHHH
Confidence                      9999999999999999999999999999999999876

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=9.3e-38  Score=233.04  Aligned_cols=100  Identities=79%  Similarity=1.438  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus        23 ~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP-----------------   85 (166)
T 2ayv_A           23 LKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPP-----------------   85 (166)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCc-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|++|||||+.+|+||+|+|+++|+|++||++|
T Consensus        86 ----------~V~F~T~i~HPNI~~~G~ICL~iL~~~WsP~~ti~~v  122 (166)
T 2ayv_A           86 ----------KVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKV  122 (166)
T ss_dssp             ----------EEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             ----------eeeeccCCcCCcCCCCCeEEcccccccCCCCCcHHHH
Confidence                      9999999999999999999999999999999999876

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=9.5e-38  Score=230.07  Aligned_cols=101  Identities=48%  Similarity=0.863  Sum_probs=98.2

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                
T Consensus         6 ~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP----------------   69 (155)
T 1jat_A            6 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAP----------------   69 (155)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCC----------------
Confidence            4689999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|++|||||+.+|+||+++|+++|+|++||++|
T Consensus        70 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v  106 (155)
T 1jat_A           70 -----------KVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTV  106 (155)
T ss_dssp             -----------EEEECSCCCBTTBCTTCCBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------cceeecccccCCCCCCCEEEchhhccCCCCCCCHHHH
Confidence                       9999999999999999999999999999999999876

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.2e-37  Score=232.10  Aligned_cols=100  Identities=91%  Similarity=1.518  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus        21 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP-----------------   83 (165)
T 2c4o_A           21 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP-----------------   83 (165)
T ss_dssp             HHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCC-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|++|||||+++|+||+|+|+++|+|++||++|
T Consensus        84 ----------~v~F~T~i~HPnV~~~G~ICl~iL~~~W~P~~ti~~v  120 (165)
T 2c4o_A           84 ----------KVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKV  120 (165)
T ss_dssp             ----------EEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             ----------EEEEecCCcCCcCCCCCeEeehhhcCCCCCcCcHHHH
Confidence                      9999999999999999999999999999999999876

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=9e-38  Score=233.71  Aligned_cols=100  Identities=38%  Similarity=0.921  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus         6 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP-----------------   68 (169)
T 1ayz_A            6 RRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPP-----------------   68 (169)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCC-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|++|||||+.+|+||+++|+++|+|++||++|
T Consensus        69 ----------~v~F~t~i~HPNI~~~G~ICl~iL~~~WsP~~~i~~v  105 (169)
T 1ayz_A           69 ----------HVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASI  105 (169)
T ss_dssp             ----------EEEESSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHH
T ss_pred             ----------ccccccCCccCCCCCCCeEeehhhccCCCCcCcHHHH
Confidence                      9999999999999999999999999999999999876

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.9e-38  Score=231.00  Aligned_cols=100  Identities=38%  Similarity=0.754  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .|||+||+++|++++++|+.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||                 
T Consensus        15 ~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP-----------------   77 (158)
T 1zdn_A           15 IRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPP-----------------   77 (158)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCC-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|+++||||+.+|+||+++|+++|+|++||++|
T Consensus        78 ----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v  114 (158)
T 1zdn_A           78 ----------KGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHV  114 (158)
T ss_dssp             ----------EEEESSCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHH
T ss_pred             ----------EEEeccCcccCCCCCCCEEehhhcCCCCCCCCcHHHH
Confidence                      9999999999999999999999999999999999876

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-37  Score=229.62  Aligned_cols=100  Identities=43%  Similarity=0.832  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.|.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus        11 ~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP-----------------   73 (156)
T 2e2c_A           11 SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPP-----------------   73 (156)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCC-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|+++||||+.+|+||+++|+++|+|++||++|
T Consensus        74 ----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v  110 (156)
T 2e2c_A           74 ----------VVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTI  110 (156)
T ss_dssp             ----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             ----------EEEEeCCcccCCCccCceEECccccccCCCCCcHHHH
Confidence                      9999999999999999999999999999999999876

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=1.7e-37  Score=227.97  Aligned_cols=100  Identities=45%  Similarity=0.987  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus         6 ~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP-----------------   68 (152)
T 2aak_A            6 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPP-----------------   68 (152)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCC-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|+++||||+.+|+||+++|+++|+|++||++|
T Consensus        69 ----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v  105 (152)
T 2aak_A           69 ----------TVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAI  105 (152)
T ss_dssp             ----------EEEESSCCCCTTBCTTSBBCCGGGTTSCCTTCCHHHH
T ss_pred             ----------EEEEecCcccCCCCCCCEEechhhcCCCCCCCcHHHH
Confidence                      9999999999999999999999999999999999876

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=1e-37  Score=228.49  Aligned_cols=101  Identities=48%  Similarity=0.975  Sum_probs=97.6

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~-nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      +.+||+||+++|++++++|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||               
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP---------------   66 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP---------------   66 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCC---------------
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCC---------------
Confidence            469999999999999999999999987 9999999999999999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecC-CCcEEeccCCCCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                  +|+|.|++|||||+. +|+||+++|+++|+|++||++|
T Consensus        67 ------------~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~v  104 (149)
T 1fxt_A           67 ------------KMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSA  104 (149)
T ss_dssp             ------------EEEESSCCCBTTBCSSSCCBCCHHHHTSCCTTCCHHHH
T ss_pred             ------------EEEEeCCCccCCCcCCCCeEeCCcCCCCCCCCCcHHHH
Confidence                        999999999999998 9999999999999999999876

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=2.8e-37  Score=229.08  Aligned_cols=101  Identities=41%  Similarity=0.883  Sum_probs=97.1

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~-nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      +.|||+||+++|++++++|+++.+.++ |+++|+++|.||++|||+||.|+|+|.||++||++||               
T Consensus         4 a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP---------------   68 (164)
T 3h8k_A            4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPP---------------   68 (164)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC---------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCC---------------
Confidence            369999999999999999999999876 9999999999999999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecCCCcEEeccCC-------------CCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-------------~~Wsp~~ti~~v  128 (129)
                                  +|+|.|++|||||+.+|+||+++|+             ++|+|++||++|
T Consensus        69 ------------~v~f~t~i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~v  118 (164)
T 3h8k_A           69 ------------KMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI  118 (164)
T ss_dssp             ------------EEEECSCCCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHH
T ss_pred             ------------EEEEcCCCccCCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHH
Confidence                        9999999999999999999999997             789999999876

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.2e-37  Score=230.32  Aligned_cols=100  Identities=40%  Similarity=0.828  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus         6 ~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP-----------------   68 (169)
T 1yh2_A            6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPP-----------------   68 (169)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCc-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCC----CCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~----~~Wsp~~ti~~v  128 (129)
                                +|+|.|++|||||+.+|+||+|+|+    ++|+|++||++|
T Consensus        69 ----------~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~v  109 (169)
T 1yh2_A           69 ----------QIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATV  109 (169)
T ss_dssp             ----------EEEESSCCCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHH
T ss_pred             ----------EEEeecCCccccCCcCCeEecccccCCcccCCCCCCcHHHH
Confidence                      9999999999999999999999998    899999999876

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=4.1e-37  Score=228.55  Aligned_cols=100  Identities=47%  Similarity=0.971  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~-~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      .|||+||+++|++++++|+.+.+.+ +|+++|+++|.||++|||+||.|+|+|.||++||++||                
T Consensus         6 ~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP----------------   69 (165)
T 2ucz_A            6 QKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPP----------------   69 (165)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCC----------------
Confidence            5899999999999999999999976 79999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccC-------------CCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL-------------RSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L-------------~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|++|||||+++|+||+|+|             .++|+|++||++|
T Consensus        70 -----------~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~v  119 (165)
T 2ucz_A           70 -----------KLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKI  119 (165)
T ss_dssp             -----------EEEESSCCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHH
T ss_pred             -----------EEEEeCCCccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHH
Confidence                       999999999999999999999999             6789999999876

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.9e-37  Score=233.04  Aligned_cols=100  Identities=37%  Similarity=0.688  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.|.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus        32 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP-----------------   94 (179)
T 1i7k_A           32 GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAP-----------------   94 (179)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCc-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|++|||||+.+|+||+++|+++|+|++||++|
T Consensus        95 ----------~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~v  131 (179)
T 1i7k_A           95 ----------TVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTI  131 (179)
T ss_dssp             ----------EEEESSCCCSTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             ----------eEEEecCCccCccccCCeEEcccCcCcCCCCCCHHHH
Confidence                      9999999999999999999999999999999999876

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=6.4e-37  Score=227.92  Aligned_cols=101  Identities=40%  Similarity=0.855  Sum_probs=96.5

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCC-----CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCC
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPL   75 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~-----nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~   75 (129)
                      +++||+||+++|++++++|+.+.|.++     |+++|+++|.||++|||+||.|+|+|.||++||++||           
T Consensus        11 ~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP-----------   79 (163)
T 3rcz_B           11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPP-----------   79 (163)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCC-----------
Confidence            369999999999999999999999876     9999999999999999999999999999999999999           


Q ss_pred             CCcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCCC--cccccCcccc
Q psy4279          76 KQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKA  128 (129)
Q Consensus        76 ~~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~--Wsp~~ti~~v  128 (129)
                                      +|+|.|++|||||+++|+||+++|++.  |+|++||++|
T Consensus        80 ----------------~v~F~t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~v  118 (163)
T 3rcz_B           80 ----------------KCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQI  118 (163)
T ss_dssp             ----------------EEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHH
T ss_pred             ----------------EEEEeCCCccCCCCCCCcEeccccCCCCCcCCcCcHHHH
Confidence                            999999999999999999999999864  9999999876

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.1e-36  Score=232.46  Aligned_cols=100  Identities=66%  Similarity=1.236  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus        50 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP-----------------  112 (194)
T 3bzh_A           50 AKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPP-----------------  112 (194)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCc-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|++|||||+.+|.|||++|+++|+|++||++|
T Consensus       113 ----------~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~v  149 (194)
T 3bzh_A          113 ----------KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKV  149 (194)
T ss_dssp             ----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             ----------cccccCCCccceECCCCceechhhhccCCCcCcHHHH
Confidence                      9999999999999999999999999999999999876

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=1.8e-36  Score=227.15  Aligned_cols=101  Identities=41%  Similarity=0.930  Sum_probs=96.7

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~-~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      +.|||+||+++|++++++|+.+.+.+ +|+++|+++|.||++|||+||.|+|+|.||++||++||               
T Consensus        18 ~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP---------------   82 (172)
T 2awf_A           18 GSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP---------------   82 (172)
T ss_dssp             THHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC---------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCC---------------
Confidence            46999999999999999999999876 79999999999999999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecCCCcEEeccCC-------------CCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-------------~~Wsp~~ti~~v  128 (129)
                                  +|+|.|++|||||+.+|+||+++|+             ++|+|++||++|
T Consensus        83 ------------~v~F~T~i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~v  132 (172)
T 2awf_A           83 ------------KMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETI  132 (172)
T ss_dssp             ------------EEEECSCCCCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHH
T ss_pred             ------------cccccCCCccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHH
Confidence                        9999999999999999999999996             689999999876

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=1.9e-36  Score=228.78  Aligned_cols=100  Identities=35%  Similarity=0.832  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEE-EcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~-p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      .|||+||+++|++++++|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||                
T Consensus         9 ~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP----------------   72 (183)
T 3rz3_A            9 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPP----------------   72 (183)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCC----------------
Confidence            5899999999999999999999 67789999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCC-------------CCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-------------~~Wsp~~ti~~v  128 (129)
                                 +|+|.|++|||||+++|+||+++|.             ++|+|++||++|
T Consensus        73 -----------~v~f~t~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~v  122 (183)
T 3rz3_A           73 -----------AFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI  122 (183)
T ss_dssp             -----------EEEESSCCCCTTBCTTSBBCCTTC--------------CCCCTTCCHHHH
T ss_pred             -----------eeEecCCCccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHH
Confidence                       9999999999999999999999997             789999999876

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1.9e-36  Score=223.90  Aligned_cols=100  Identities=40%  Similarity=0.861  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHhhcC---CCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCc
Q psy4279           2 KKNKQKELQDLGRD---PPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQP   78 (129)
Q Consensus         2 ~rRL~kEl~~l~~~---~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~   78 (129)
                      .+||+||+++|+++   +++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||              
T Consensus        10 ~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP--------------   75 (159)
T 2bep_A           10 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPP--------------   75 (159)
T ss_dssp             HHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC--------------
T ss_pred             HHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCC--------------
Confidence            58999999999985   5889999999999999999999999999999999999999999999999              


Q ss_pred             ccccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279          79 KVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        79 ~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                   +|+|.|++|||||+ .+|+||+++|+++|+|++||++|
T Consensus        76 -------------~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~v  113 (159)
T 2bep_A           76 -------------KVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV  113 (159)
T ss_dssp             -------------EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             -------------EEEeeCCCCccCCCCCCCEEeChhhhccCCCCCcHHHH
Confidence                         99999999999999 59999999999999999999876

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.7e-37  Score=228.45  Aligned_cols=100  Identities=35%  Similarity=0.682  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus        25 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP-----------------   87 (169)
T 1yrv_A           25 YLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPP-----------------   87 (169)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCC-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeecccccee-cCCCcEEeccCC--CCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNI-NSNGSICLDILR--SQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni-~~~G~iCl~~L~--~~Wsp~~ti~~v  128 (129)
                                +|+|.|++||||| +.+|+||+++|+  ++|+|++||++|
T Consensus        88 ----------~V~F~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~v  127 (169)
T 1yrv_A           88 ----------VVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSI  127 (169)
T ss_dssp             ----------EEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHH
T ss_pred             ----------cceecCCCccCcccCCCCeEeehhhcCCcCCCCcCCHHHH
Confidence                      9999999999999 799999999998  899999999876

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1.2e-36  Score=235.73  Aligned_cols=100  Identities=46%  Similarity=0.930  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus        25 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP-----------------   87 (216)
T 2pwq_A           25 LLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPP-----------------   87 (216)
T ss_dssp             HHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCC-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|++|||||+ .+|.||+|+|+++|+|++||++|
T Consensus        88 ----------~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~V  125 (216)
T 2pwq_A           88 ----------KIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTA  125 (216)
T ss_dssp             ----------EEEESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCHHHH
T ss_pred             ----------cccccCCCcCCCCcCCCCEEEchhhcccCCCCCcHHHH
Confidence                      99999999999999 58999999999999999999876

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.7e-36  Score=230.14  Aligned_cols=100  Identities=49%  Similarity=0.930  Sum_probs=94.0

Q ss_pred             hHHHHHHHHHhhcCCC-------------CCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCC
Q psy4279           2 KKNKQKELQDLGRDPP-------------AQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPK   68 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~-------------~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~   68 (129)
                      .|||+||+++|+++++             .|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||    
T Consensus        34 ~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP----  109 (193)
T 2f4z_A           34 QARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP----  109 (193)
T ss_dssp             HHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----
T ss_pred             HHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC----
Confidence            5899999999999876             79999999999999999999999999999999999999999999999    


Q ss_pred             cccccCCCCcccccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279          69 VSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                             +|+|.|++|||||+ .+|+||+++|+++|+|++||++|
T Consensus       110 -----------------------~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~v  147 (193)
T 2f4z_A          110 -----------------------KMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTA  147 (193)
T ss_dssp             -----------------------EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHH
T ss_pred             -----------------------eEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHH
Confidence                                   99999999999999 59999999999999999999876

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=2.5e-36  Score=223.03  Aligned_cols=100  Identities=40%  Similarity=0.803  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCC
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVG-----DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLK   76 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~-----~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~   76 (129)
                      .|||+||+++|++++++|+.+.|.+     +|+++|+++|.||++|||+||.|+++|.||++||++||            
T Consensus         6 ~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP------------   73 (157)
T 2gjd_A            6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPP------------   73 (157)
T ss_dssp             HHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCC------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCC------------
Confidence            5899999999999999999999875     48999999999999999999999999999999999999            


Q ss_pred             CcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCC--CcccccCcccc
Q psy4279          77 QPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISKA  128 (129)
Q Consensus        77 ~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~--~Wsp~~ti~~v  128 (129)
                                     +|+|.|+++||||+++|+||+++|++  +|+|++||++|
T Consensus        74 ---------------~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~v  112 (157)
T 2gjd_A           74 ---------------KVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQI  112 (157)
T ss_dssp             ---------------EEECCTTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHH
T ss_pred             ---------------eeeccCCCccCCCCCCCcEeeecccCCCCCCCCCcHHHH
Confidence                           99999999999999999999999987  79999999876

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=4.9e-36  Score=220.76  Aligned_cols=100  Identities=39%  Similarity=0.843  Sum_probs=96.4

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEE-EEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSA-GPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~-~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      +.|||+||+++|++++++|+.+ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||               
T Consensus         5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP---------------   68 (155)
T 1wzv_A            5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPP---------------   68 (155)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCC---------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCC---------------
Confidence            3699999999999999999999 788899999999999 99999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecCCCcEEeccC-CCCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL-RSQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L-~~~Wsp~~ti~~v  128 (129)
                                  +|+|.|++|||||+.+|+||+++| .++|+|++||++|
T Consensus        69 ------------~v~f~t~i~HPnV~~~G~iCl~iL~~~~W~p~~~i~~v  106 (155)
T 1wzv_A           69 ------------MIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQV  106 (155)
T ss_dssp             ------------EEEESSCCCBTTBCTTCBCCCGGGCTTTCCTTCCHHHH
T ss_pred             ------------cceeeCCCccCcCCCCCeEeecCCCccCCCCCCcHHHH
Confidence                        999999999999999999999999 8999999999876

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=8e-36  Score=227.97  Aligned_cols=101  Identities=40%  Similarity=0.850  Sum_probs=96.4

Q ss_pred             ChHHHHHHHHHhhcC---CCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279           1 MKKNKQKELQDLGRD---PPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ   77 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~---~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~   77 (129)
                      +.|||+||+++|+++   ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||             
T Consensus         6 a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP-------------   72 (201)
T 3k9o_A            6 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPP-------------   72 (201)
T ss_dssp             THHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-------------
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCC-------------
Confidence            469999999999987   3689999999999999999999999999999999999999999999999             


Q ss_pred             cccccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279          78 PKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                    +|+|.|++|||||+ .+|+||+|+|+++|+|++||++|
T Consensus        73 --------------~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~v  110 (201)
T 3k9o_A           73 --------------KVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV  110 (201)
T ss_dssp             --------------EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             --------------ccccccCcccCCCcCCCCeeeCcccccCCCCCCCHHHH
Confidence                          99999999999999 59999999999999999999876

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=6.6e-36  Score=221.55  Aligned_cols=100  Identities=35%  Similarity=0.760  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCC
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVG-----DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLK   76 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~-----~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~   76 (129)
                      .|||+||+++|++++++|+.+.|.+     +|+++|+++|.||++|||+||.|+++|.||++||++||            
T Consensus         9 ~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP------------   76 (161)
T 2grr_A            9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPP------------   76 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCC------------
Confidence            5899999999999999999998864     68999999999999999999999999999999999999            


Q ss_pred             CcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCC--CcccccCcccc
Q psy4279          77 QPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISKA  128 (129)
Q Consensus        77 ~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~--~Wsp~~ti~~v  128 (129)
                                     +|+|.|+++||||+++|+||+++|++  +|+|++||++|
T Consensus        77 ---------------~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~v  115 (161)
T 2grr_A           77 ---------------KCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQI  115 (161)
T ss_dssp             ---------------EEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHH
T ss_pred             ---------------EEEEecCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHH
Confidence                           99999999999999999999999986  79999999876

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-35  Score=219.99  Aligned_cols=97  Identities=37%  Similarity=0.791  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEE-EcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~-p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      .+||+||+++|  ++++|+.+. +.++|+++|+++| ||++|||+||.|+++|.||++||++||                
T Consensus         8 ~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP----------------   68 (160)
T 1y8x_A            8 QLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPP----------------   68 (160)
T ss_dssp             HHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCC----------------
Confidence            58999999999  578899998 7889999999998 999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+.+|+||+|+|+++|+|++||++|
T Consensus        69 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v  105 (160)
T 1y8x_A           69 -----------KVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSI  105 (160)
T ss_dssp             -----------EEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------EEEEecCCccCcCCCCCeEEcccchhhccCCCCHHHH
Confidence                       9999999999999999999999999999999999876

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=2.8e-35  Score=218.91  Aligned_cols=100  Identities=28%  Similarity=0.499  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHhhcCCCCC-eEEEE-cCCC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279           2 KKNKQKELQDLGRDPPAQ-CSAGP-VGDD--LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ   77 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~-~~~~p-~~~n--l~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~   77 (129)
                      .|||+||+++|++++++| +.+.+ .++|  +++|+++|.||++||||||.|+++|.||++||++||             
T Consensus        27 ~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP-------------   93 (160)
T 2a4d_A           27 NFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP-------------   93 (160)
T ss_dssp             HHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-------------
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCc-------------
Confidence            479999999999998888 78887 4454  999999999999999999999999999999999999             


Q ss_pred             cccccccccCCCCCeEEeeeccccceec-CCCcEEeccCC--CCcccccCcccc
Q psy4279          78 PKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILR--SQWSPALTISKA  128 (129)
Q Consensus        78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~--~~Wsp~~ti~~v  128 (129)
                                    +|+|.|+++||||+ ++|+||+++|+  ++|+|++||++|
T Consensus        94 --------------~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~v  133 (160)
T 2a4d_A           94 --------------FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVV  133 (160)
T ss_dssp             --------------EEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHH
T ss_pred             --------------EEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHH
Confidence                          99999999999999 79999999998  899999999876

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=5.4e-36  Score=231.84  Aligned_cols=101  Identities=49%  Similarity=0.982  Sum_probs=96.4

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~-nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      +.|||+||+++|++++++|+++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||               
T Consensus         3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP---------------   67 (215)
T 1tte_A            3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP---------------   67 (215)
T ss_dssp             THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCC---------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCC---------------
Confidence            469999999999999999999999886 4669999999999999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecC-CCcEEeccCCCCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                  +|+|.|++|||||++ +|+||+|+|+++|+|++||++|
T Consensus        68 ------------~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~V  105 (215)
T 1tte_A           68 ------------KMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSA  105 (215)
T ss_dssp             ------------EEEETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCHHHH
T ss_pred             ------------cccccCCCccCcCcCCCCEEECccCCCCCCCcCcHHHH
Confidence                        999999999999998 9999999999999999999876

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.3e-35  Score=221.79  Aligned_cols=97  Identities=36%  Similarity=0.754  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEE-EcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~-p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      .+||+||+++|  ++++|+.+. +.++|+++|+++| ||++|||+||.|+++|.||++||++||                
T Consensus        28 ~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP----------------   88 (180)
T 2nvu_C           28 QLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPP----------------   88 (180)
T ss_dssp             HHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCC----------------
Confidence            58999999999  578899998 7889999999998 999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|++|||||+.+|+||+|+|+++|+|++||++|
T Consensus        89 -----------~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~~i~~v  125 (180)
T 2nvu_C           89 -----------KVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSI  125 (180)
T ss_dssp             -----------EEEECSCCCBTTBCTTSBBCCGGGTTSCCTTCCHHHH
T ss_pred             -----------cCceeccCccCCCCCCCcEEcccccccCCCCCCHHHH
Confidence                       9999999999999999999999999999999999876

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=8.9e-36  Score=219.32  Aligned_cols=98  Identities=26%  Similarity=0.653  Sum_probs=93.1

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.|||+||+++|+++   |+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||                
T Consensus         3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP----------------   63 (152)
T 2onu_A            3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASP----------------   63 (152)
T ss_dssp             CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCC----------------
Confidence            468999999999874   7889999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|++|||||+ .+|+||+|+|+++|+|++||++|
T Consensus        64 -----------~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~~i~~v  101 (152)
T 2onu_A           64 -----------SIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNV  101 (152)
T ss_dssp             -----------EEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTCCHHHH
T ss_pred             -----------eEEEecCCccCcCcCcCCeEecccccccCCCCCCHHHH
Confidence                       99999999999999 59999999999999999999876

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=3.6e-35  Score=215.93  Aligned_cols=100  Identities=36%  Similarity=0.816  Sum_probs=93.5

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEE-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGP-VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p-~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      +.+||+||+++|++++++|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||               
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP---------------   66 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPP---------------   66 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCC---------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCC---------------
Confidence            358999999999999999998654 6789999999998 99999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecCCCcEEeccCC-CCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-SQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-~~Wsp~~ti~~v  128 (129)
                                  +|+|.|+++||||+++|+||+++|+ ++|+|++||++|
T Consensus        67 ------------~v~f~t~i~HPnv~~~G~iCl~iL~~~~W~p~~~i~~v  104 (154)
T 1c4z_D           67 ------------KITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQV  104 (154)
T ss_dssp             ------------EEEESSCCCCTTBCTTCBBCCTTTSSSSCCTTCCHHHH
T ss_pred             ------------EEEEeCCCccccCCCCCEEECCCCCCCCCCCCCcHHHH
Confidence                        9999999999999999999999997 789999999876

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=1.8e-35  Score=220.39  Aligned_cols=101  Identities=29%  Similarity=0.597  Sum_probs=96.4

Q ss_pred             ChHHHHHHHHHhhcCC------------CCCeEEEEcCCCceeEEEEEeCCCCCCCC--CcEEEEEEEcCCCCCCCCCCC
Q psy4279           1 MKKNKQKELQDLGRDP------------PAQCSAGPVGDDLFHWQATIMGPPDSPYQ--GGVFFLTIHFPTDYPFKPPKP   66 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~------------~~~~~~~p~~~nl~~w~~~i~gp~~tpY~--gg~y~~~i~fp~~YP~~pP~~   66 (129)
                      +.|||+||+++|++++            +.++.+.+.++|+++|+++|.||++|||+  ||.|+++|.||++||++||  
T Consensus         9 a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP--   86 (167)
T 4ds2_A            9 SNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPP--   86 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCC--
T ss_pred             HHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCC--
Confidence            3699999999999976            78899999999999999999999999999  9999999999999999999  


Q ss_pred             CCcccccCCCCcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          67 PKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                               +|+|.|++|||||+.+|+||+++|+++|+|++||++|
T Consensus        87 -------------------------~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~v  123 (167)
T 4ds2_A           87 -------------------------TVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDV  123 (167)
T ss_dssp             -------------------------EEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHH
T ss_pred             -------------------------EEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHH
Confidence                                     9999999999999999999999999999999998764

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=8.9e-35  Score=216.29  Aligned_cols=99  Identities=36%  Similarity=0.694  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEc-CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~-~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      .|||+||+++|++++++|+.+.+. ++|+++|+++| ||++|||+||.|+++|.||++||++||                
T Consensus        16 ~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP----------------   78 (167)
T 3fn1_B           16 DKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPP----------------   78 (167)
T ss_dssp             HHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCC----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCC----------------
Confidence            589999999999999999999854 57899999998 899999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCC------CcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------QWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~------~Wsp~~ti~~v  128 (129)
                                 +|+|.|++|||||+.+|+||+++|++      +|+|++||++|
T Consensus        79 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~v  121 (167)
T 3fn1_B           79 -----------KVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDV  121 (167)
T ss_dssp             -----------EEEECSCCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHH
T ss_pred             -----------eeEecCCcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHH
Confidence                       99999999999999999999999975      79999999876

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=9.5e-35  Score=229.62  Aligned_cols=100  Identities=40%  Similarity=0.861  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHhhcC---CCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCc
Q psy4279           2 KKNKQKELQDLGRD---PPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQP   78 (129)
Q Consensus         2 ~rRL~kEl~~l~~~---~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~   78 (129)
                      .+||+|||++|+++   ++.|+.+.|.++|+++|+++|.||++|||+||.|+|+|.||++||++||              
T Consensus        59 ~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP--------------  124 (253)
T 3e46_A           59 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPP--------------  124 (253)
T ss_dssp             HHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC--------------
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCC--------------
Confidence            58999999999987   4789999999999999999999999999999999999999999999999              


Q ss_pred             ccccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279          79 KVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        79 ~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                   +|+|.|++|||||+ .+|.||+|+|.++|+|++||++|
T Consensus       125 -------------~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~v  162 (253)
T 3e46_A          125 -------------KVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV  162 (253)
T ss_dssp             -------------EEEESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHH
T ss_pred             -------------eeeecCCCccCCccCCCCeeecccccCCCCCCCCHHHH
Confidence                         99999999999999 59999999999999999999876

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=1.5e-34  Score=213.99  Aligned_cols=99  Identities=29%  Similarity=0.523  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHhhcC-CCCCeEEEEcC-C--CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279           2 KKNKQKELQDLGRD-PPAQCSAGPVG-D--DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ   77 (129)
Q Consensus         2 ~rRL~kEl~~l~~~-~~~~~~~~p~~-~--nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~   77 (129)
                      .+||+||+++|+++ +++|+++.+.+ +  |+++|+++|.||++|||+||.|+++|.||++||++||             
T Consensus        23 ~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP-------------   89 (156)
T 2q0v_A           23 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPP-------------   89 (156)
T ss_dssp             HHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-------------
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCC-------------
Confidence            48999999999998 78999999854 3  5999999999999999999999999999999999999             


Q ss_pred             cccccccccCCCCCeEEeeeccccceecCCCcE---EeccCCCCcccccCcccc
Q psy4279          78 PKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI---CLDILRSQWSPALTISKA  128 (129)
Q Consensus        78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~i---Cl~~L~~~Wsp~~ti~~v  128 (129)
                                    +|+|.|++|||||+++|+|   |+++|+ +|+|++||++|
T Consensus        90 --------------~v~F~t~i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~v  128 (156)
T 2q0v_A           90 --------------TVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETI  128 (156)
T ss_dssp             --------------EEEESBCCCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHH
T ss_pred             --------------eEEEEcccccCCCccCCeEehhhccccc-CCCCcCcHHHH
Confidence                          9999999999999999999   899997 59999999876

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=1.4e-34  Score=209.73  Aligned_cols=99  Identities=32%  Similarity=0.638  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHhhcC-CCCCeEEEEcC-C--CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279           2 KKNKQKELQDLGRD-PPAQCSAGPVG-D--DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ   77 (129)
Q Consensus         2 ~rRL~kEl~~l~~~-~~~~~~~~p~~-~--nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~   77 (129)
                      .|||+||+++|+++ +++|+++.+.+ +  |+++|+++|.||++|||+||.|+++|.||++||++||             
T Consensus         8 ~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP-------------   74 (138)
T 1jat_B            8 NFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPP-------------   74 (138)
T ss_dssp             HHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCC-------------
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCC-------------
Confidence            37999999999998 78999999854 3  5999999999999999999999999999999999999             


Q ss_pred             cccccccccCCCCCeEEeeeccccceecCC-CcE--EeccCCCCcccccCcccc
Q psy4279          78 PKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSI--CLDILRSQWSPALTISKA  128 (129)
Q Consensus        78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~~~-G~i--Cl~~L~~~Wsp~~ti~~v  128 (129)
                                    +|+|.|++|||||+.+ |+|  |+++|+ +|+|++||++|
T Consensus        75 --------------~v~f~t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~v  113 (138)
T 1jat_B           75 --------------KVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETL  113 (138)
T ss_dssp             --------------EEEESBCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHH
T ss_pred             --------------ceEEEcccccCCEeCCCCEEeeecccCC-CCCCcCcHHHH
Confidence                          9999999999999986 999  999985 89999999876

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=7.5e-35  Score=218.29  Aligned_cols=100  Identities=28%  Similarity=0.499  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHhhcCCCCC-eEEEE-cCCC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279           2 KKNKQKELQDLGRDPPAQ-CSAGP-VGDD--LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ   77 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~-~~~~p-~~~n--l~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~   77 (129)
                      .+||+||+++|++++++| +.+.+ .++|  +++|+++|.||++|||+||.|+++|.||++||++||             
T Consensus        37 ~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP-------------  103 (170)
T 2hlw_A           37 NFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP-------------  103 (170)
T ss_dssp             HHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCC-------------
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCC-------------
Confidence            489999999999998888 77887 4554  999999999999999999999999999999999999             


Q ss_pred             cccccccccCCCCCeEEeeeccccceec-CCCcEEeccCC--CCcccccCcccc
Q psy4279          78 PKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILR--SQWSPALTISKA  128 (129)
Q Consensus        78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~--~~Wsp~~ti~~v  128 (129)
                                    +|+|.|++|||||+ .+|+||+++|+  ++|+|++||++|
T Consensus       104 --------------~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~v  143 (170)
T 2hlw_A          104 --------------FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVV  143 (170)
T ss_dssp             --------------EEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHH
T ss_pred             --------------eeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCcHHHH
Confidence                          99999999999999 79999999998  899999999876

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=2e-34  Score=215.87  Aligned_cols=100  Identities=35%  Similarity=0.715  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHhhc-C-C------CC---CeEEEE-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCc
Q psy4279           2 KKNKQKELQDLGR-D-P------PA---QCSAGP-VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKV   69 (129)
Q Consensus         2 ~rRL~kEl~~l~~-~-~------~~---~~~~~p-~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~   69 (129)
                      .+||+||+++|++ + +      +.   ++.+.| .++|+++|+++|.||++|||+||.|+|+|.||++||++||     
T Consensus         8 ~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP-----   82 (172)
T 2y9m_A            8 MSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP-----   82 (172)
T ss_dssp             HHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----
T ss_pred             HHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC-----
Confidence            5899999999998 4 3      33   567788 7889999999999999999999999999999999999999     


Q ss_pred             ccccCCCCcccccccccCCCCCeEEeee-ccccceec-CCCcEEeccCC-CCcccccCcccc
Q psy4279          70 SIEYPLKQPKVKVSRKYPLKLPKVAFTT-RIYHPNIN-SNGSICLDILR-SQWSPALTISKA  128 (129)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~p~v~f~t-~i~HPni~-~~G~iCl~~L~-~~Wsp~~ti~~v  128 (129)
                                            +|+|.| ++|||||+ .+|+||+++|+ ++|+|++||++|
T Consensus        83 ----------------------~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~v  122 (172)
T 2y9m_A           83 ----------------------KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC  122 (172)
T ss_dssp             ----------------------EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHH
T ss_pred             ----------------------EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHH
Confidence                                  999999 99999995 89999999998 899999999876

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=4.7e-34  Score=237.13  Aligned_cols=101  Identities=89%  Similarity=1.463  Sum_probs=98.4

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.|||+||+++|++++++|+.+.|.++|+++|+++|.||++|||+||.|+++|.||++||++||                
T Consensus         4 a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP----------------   67 (399)
T 4ddg_A            4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP----------------   67 (399)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCC----------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCc----------------
Confidence            3699999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+++|.||+|+|+++|+|++||++|
T Consensus        68 -----------~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~v  104 (399)
T 4ddg_A           68 -----------KVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKV  104 (399)
T ss_dssp             -----------EEEESSCCCCTTBCTTCBBCCGGGTTSCCTTCCHHHH
T ss_pred             -----------EEEeeccccccccCCCCeEeCcccccCCCccccHHHH
Confidence                       9999999999999999999999999999999999876

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=218.66  Aligned_cols=96  Identities=28%  Similarity=0.748  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .|||+||+++|++   +|+.+.+. ||+++|+++|.||++|||+||.|+++|.||++||++||                 
T Consensus        27 ~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP-----------------   85 (179)
T 2z5d_A           27 KRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSP-----------------   85 (179)
T ss_dssp             HHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred             HHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCc-----------------
Confidence            5899999999985   57888887 67999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecC-CCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|++|||||+. +|+||+|+|+++|+|++||++|
T Consensus        86 ----------~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~i  123 (179)
T 2z5d_A           86 ----------SIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNI  123 (179)
T ss_dssp             ----------EEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHH
T ss_pred             ----------eEEEecCCccCcCCCCCCeEeccccccCCCCCCCHHHH
Confidence                      999999999999998 9999999999999999999876

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1e-33  Score=214.73  Aligned_cols=98  Identities=28%  Similarity=0.699  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||                 
T Consensus        16 ~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP-----------------   78 (187)
T 2f4w_A           16 TQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPP-----------------   78 (187)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCC-----------------
Confidence            589999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccC---CCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL---RSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L---~~~Wsp~~ti~~v  128 (129)
                                +|+|.|+  |||++.+|+||+|+|   .++|+|++||++|
T Consensus        79 ----------~v~f~T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~v  116 (187)
T 2f4w_A           79 ----------SIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTI  116 (187)
T ss_dssp             ----------EEEECSC--CSSBCTTSCBC----------CCTTCCHHHH
T ss_pred             ----------cccccCC--CceeccCCeEeeeccccCccCCCCcCcHHHH
Confidence                      9999998  999999999999999   6899999999876

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=6.1e-34  Score=213.35  Aligned_cols=96  Identities=29%  Similarity=0.767  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||++|+++|++++. +  + +.++|+++|+++|.||++|||+||.|+|+|.||++||++||                 
T Consensus        14 ~~RL~~El~~l~~~~~-~--v-~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP-----------------   72 (171)
T 1yf9_A           14 NRRREMDYMRLCNSTR-K--V-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSP-----------------   72 (171)
T ss_dssp             CHHHHHHHHHHHSSSS-C--E-EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCC-C--C-CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCC-----------------
Confidence            5899999999999874 4  3 45889999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|++|||||+ .+|+||+|+|+++|+|++||++|
T Consensus        73 ----------~v~F~t~i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~v  110 (171)
T 1yf9_A           73 ----------SIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENI  110 (171)
T ss_dssp             ----------EEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHH
T ss_pred             ----------eEEeecCcccccCcccCCeEeccccccCCCCCCcHHHH
Confidence                      99999999999999 59999999999999999999876

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=1.2e-33  Score=214.84  Aligned_cols=97  Identities=32%  Similarity=0.683  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEE----EcCCCce---eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccC
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAG----PVGDDLF---HWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYP   74 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~----p~~~nl~---~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~   74 (129)
                      .+||+|||++|+  .++|+.+.    +.++|++   +|+++|. |++|||+||.|+++|.||++||++||          
T Consensus        31 ~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP----------   97 (190)
T 3o2u_A           31 RIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPP----------   97 (190)
T ss_dssp             HHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCC----------
T ss_pred             HHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCc----------
Confidence            689999999998  77899998    8889999   9999997 78899999999999999999999999          


Q ss_pred             CCCcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          75 LKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        75 ~~~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                       +|+|.|++|||||+.+|+||+++|+++|+|++||++|
T Consensus        98 -----------------~v~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~v  134 (190)
T 3o2u_A           98 -----------------KVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSI  134 (190)
T ss_dssp             -----------------EEEECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------------eeEEecCcccCCCCCCCeEechhccCCCCCCCCHHHH
Confidence                             9999999999999999999999999999999999876

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=5.9e-34  Score=216.01  Aligned_cols=100  Identities=27%  Similarity=0.598  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHhhcCC---CCCeEEEEcCCCceeEEEEEeCC-CCCCCCC-----------cEEEEEEEcCCCCCCCCCCC
Q psy4279           2 KKNKQKELQDLGRDP---PAQCSAGPVGDDLFHWQATIMGP-PDSPYQG-----------GVFFLTIHFPTDYPFKPPKP   66 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~---~~~~~~~p~~~nl~~w~~~i~gp-~~tpY~g-----------g~y~~~i~fp~~YP~~pP~~   66 (129)
                      .+||+|||++|++++   ++++.+.+.++|+++|+++|.|| ++|||+|           |.|+|+|.||++||++||  
T Consensus        29 ~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP--  106 (186)
T 1zuo_A           29 SDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPP--  106 (186)
T ss_dssp             HHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCC--
T ss_pred             HHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCC--
Confidence            589999999999988   68999999999999999999997 8999998           899999999999999999  


Q ss_pred             CCcccccCCCCcccccccccCCCCCeEEeeeccccc-eecCCCcEEeccCC-CCcccccCcccc
Q psy4279          67 PKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHP-NINSNGSICLDILR-SQWSPALTISKA  128 (129)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~i~HP-ni~~~G~iCl~~L~-~~Wsp~~ti~~v  128 (129)
                                               +|+|.|+++|| ||+.+|+||+|+|. ++|+|++||++|
T Consensus       107 -------------------------~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~V  145 (186)
T 1zuo_A          107 -------------------------FVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESV  145 (186)
T ss_dssp             -------------------------EEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHH
T ss_pred             -------------------------eEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHH
Confidence                                     99999999999 69999999999997 789999999876

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.97  E-value=5.7e-32  Score=219.96  Aligned_cols=100  Identities=30%  Similarity=0.613  Sum_probs=93.3

Q ss_pred             hHHHHHHHHHhhcCCCCC----eEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279           2 KKNKQKELQDLGRDPPAQ----CSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ   77 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~----~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~   77 (129)
                      .|||+||+++|++++++|    +.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||             
T Consensus        78 ~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP-------------  144 (323)
T 3ceg_A           78 ARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPP-------------  144 (323)
T ss_dssp             HHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCC-------------
T ss_pred             HHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCC-------------
Confidence            589999999999988775    456788999999999999999999999999999999999999999             


Q ss_pred             cccccccccCCCCCeEEeeec-----cccceecCCCcEEeccCC-------CCccccc-Ccccc
Q psy4279          78 PKVKVSRKYPLKLPKVAFTTR-----IYHPNINSNGSICLDILR-------SQWSPAL-TISKA  128 (129)
Q Consensus        78 ~~~~~~~~~~~~~p~v~f~t~-----i~HPni~~~G~iCl~~L~-------~~Wsp~~-ti~~v  128 (129)
                                    +|+|.|+     +|||||+.+|+||||+|+       ++|+|++ ||++|
T Consensus       145 --------------~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~V  194 (323)
T 3ceg_A          145 --------------LVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQV  194 (323)
T ss_dssp             --------------EEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHH
T ss_pred             --------------eEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHH
Confidence                          9999998     999999999999999997       6899999 78775

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.93  E-value=1e-27  Score=179.12  Aligned_cols=94  Identities=18%  Similarity=0.280  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGG----------VFFLTIHFPTDYPFKPPKPPKVSI   71 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg----------~y~~~i~fp~~YP~~pP~~~~~~~   71 (129)
                      .+||++|+++|++      .+.+.++|+.+|.+.+.|++||+|+||          .|.++|+||++||++||       
T Consensus        34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PP-------  100 (172)
T 2z6o_A           34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAP-------  100 (172)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCC-------
T ss_pred             HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCC-------
Confidence            6899999999999      367778999999999999999999999          99999999999999999       


Q ss_pred             ccCCCCcccccccccCCCCCeEEeeec-cccceecCCCcEEeccC-CC---CcccccCcccc
Q psy4279          72 EYPLKQPKVKVSRKYPLKLPKVAFTTR-IYHPNINSNGSICLDIL-RS---QWSPALTISKA  128 (129)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~p~v~f~t~-i~HPni~~~G~iCl~~L-~~---~Wsp~~ti~~v  128 (129)
                                          +|+|.+. ++|||||.+|+||||+| +.   .|+|+++|..|
T Consensus       101 --------------------eV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~Iahi  142 (172)
T 2z6o_A          101 --------------------EIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHL  142 (172)
T ss_dssp             --------------------CCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHH
T ss_pred             --------------------eeeeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHH
Confidence                                9999998 99999999999999999 43   35599998764

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.69  E-value=1.3e-18  Score=128.10  Aligned_cols=87  Identities=20%  Similarity=0.341  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGG----------VFFLTIHFPTDYPFKPPKPPKVSI   71 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg----------~y~~~i~fp~~YP~~pP~~~~~~~   71 (129)
                      ..||.+||+.|-+-      ++.+.++-.+|...+.|++||+|+|+          .|.++|+||.+||.+||       
T Consensus        36 ~~RlkeEy~alI~y------v~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPP-------  102 (168)
T 3kpa_A           36 TARLKEEYASLITY------VEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPP-------  102 (168)
T ss_dssp             HHHHHHHHHHHHHH------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCC-------
T ss_pred             HHHHHHHHHHHHHH------HHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCC-------
Confidence            47999999998652      22233445679999999999999999          99999999999999999       


Q ss_pred             ccCCCCcccccccccCCCCCeEEeeec-cccceecCCCcEEeccCCCCcccccC
Q psy4279          72 EYPLKQPKVKVSRKYPLKLPKVAFTTR-IYHPNINSNGSICLDILRSQWSPALT  124 (129)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~p~v~f~t~-i~HPni~~~G~iCl~~L~~~Wsp~~t  124 (129)
                                          .++|.+. .+|||+|.+|+||||++   |+|+++
T Consensus       103 --------------------eI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW~  133 (168)
T 3kpa_A          103 --------------------EIALPELEGKTVKMYRGGKICMTTH---FFPLWA  133 (168)
T ss_dssp             --------------------CCBCGGGTTTCSSEETTTEECCCTT---HHHHHH
T ss_pred             --------------------EeecccccCcCccccCCCcEEeccc---cchhhH
Confidence                                9999995 89999999999999986   998865

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.64  E-value=2.3e-16  Score=117.28  Aligned_cols=98  Identities=22%  Similarity=0.338  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhhcCCC---CCeEEEEcCCCceeEEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCCCCCCcccccCCC
Q psy4279           3 KNKQKELQDLGRDPP---AQCSAGPVGDDLFHWQATIMGPPDSPYQGGV---FFLTIHFPTDYPFKPPKPPKVSIEYPLK   76 (129)
Q Consensus         3 rRL~kEl~~l~~~~~---~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~---y~~~i~fp~~YP~~pP~~~~~~~~~~~~   76 (129)
                      +|..+|+.++.+.-+   +...+...+|...++-+++.|.-..+|+||.   |.+.|.||++||++||            
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP------------   98 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPP------------   98 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCC------------
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCC------------
Confidence            577788888776322   2223345667777777778887779999999   7799999999999999            


Q ss_pred             CcccccccccCCCCCeEEeee-------c---cc-cceecCCCcEEeccCCCCccc-ccCcccc
Q psy4279          77 QPKVKVSRKYPLKLPKVAFTT-------R---IY-HPNINSNGSICLDILRSQWSP-ALTISKA  128 (129)
Q Consensus        77 ~~~~~~~~~~~~~~p~v~f~t-------~---i~-HPni~~~G~iCl~~L~~~Wsp-~~ti~~v  128 (129)
                                     .+.|.+       +   ++ ||||+++|+||++.| ++|+| +.+|.+|
T Consensus        99 ---------------~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL-~~W~p~~s~L~~l  146 (162)
T 3r3q_A           99 ---------------FISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDPAAMNLIMV  146 (162)
T ss_dssp             ---------------EEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGG-GSCCGGGCCHHHH
T ss_pred             ---------------EEEEECCCccccccccccCCCCCCCCCCcEeCccc-ccCCCCcCcHHHH
Confidence                           887765       1   66 999999999999999 56999 6788764

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.33  E-value=8.1e-13  Score=96.66  Aligned_cols=91  Identities=20%  Similarity=0.377  Sum_probs=68.0

Q ss_pred             HHHHHHHHhhcCCCCCeEE--E---EcCCCceeEEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCCCCCCcccccCCC
Q psy4279           4 NKQKELQDLGRDPPAQCSA--G---PVGDDLFHWQATIMGPPDSPYQGGVFFL--TIHFPTDYPFKPPKPPKVSIEYPLK   76 (129)
Q Consensus         4 RL~kEl~~l~~~~~~~~~~--~---p~~~nl~~w~~~i~gp~~tpY~gg~y~~--~i~fp~~YP~~pP~~~~~~~~~~~~   76 (129)
                      +..+|+.++.+.-+ ++..  .   -...++.+|.++|.    .+|+|+.|.+  .|-||++||++||            
T Consensus        24 ~t~~dv~~vl~~yp-~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP------------   86 (146)
T 3obq_A           24 LTVRETVNVITLYK-DLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPP------------   86 (146)
T ss_dssp             HHHHHHHHHHHHCT-TEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCC------------
T ss_pred             hhHHHHHHHHHhCC-CCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCC------------
Confidence            44567766655322 2221  1   12368999999997    5799999995  8889999999999            


Q ss_pred             CcccccccccCCCCCeEEeeec------cccceecCCCcEEeccCCCCccc-ccCcccc
Q psy4279          77 QPKVKVSRKYPLKLPKVAFTTR------IYHPNINSNGSICLDILRSQWSP-ALTISKA  128 (129)
Q Consensus        77 ~~~~~~~~~~~~~~p~v~f~t~------i~HPni~~~G~iCl~~L~~~Wsp-~~ti~~v  128 (129)
                                     .+ |.++      ..||||+++|+||++.|++ |++ +.+|.++
T Consensus        87 ---------------~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~snL~~l  128 (146)
T 3obq_A           87 ---------------IC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQSDLLGL  128 (146)
T ss_dssp             ---------------EE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTCCHHHH
T ss_pred             ---------------EE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCCCHHHH
Confidence                           77 5544      4799999999999999955 988 6776543

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.43  E-value=0.079  Score=36.20  Aligned_cols=60  Identities=15%  Similarity=0.227  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCC
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP   64 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP   64 (129)
                      .+...|+..|..--++.+.+.  .+....+.+.|....+..-+.-.+.+.|.||++||..||
T Consensus        13 e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P   72 (128)
T 2ebm_A           13 EEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAP   72 (128)
T ss_dssp             HHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCC
T ss_pred             HHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCc
Confidence            456788888887555555543  223356666665322222233478899999999999999

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=95.37  E-value=0.14  Score=34.99  Aligned_cols=62  Identities=16%  Similarity=0.121  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEcCC--CceeEEEEEeCCCCCCC--CCcEEEEEEEcCCCCCCCCC
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPVGD--DLFHWQATIMGPPDSPY--QGGVFFLTIHFPTDYPFKPP   64 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~~~--nl~~w~~~i~gp~~tpY--~gg~y~~~i~fp~~YP~~pP   64 (129)
                      .+.+.|+..|..--++.+.+....+  +...+.+.|....+..-  ..-.+.+.|.+|++||..+|
T Consensus        11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P   76 (128)
T 2day_A           11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVP   76 (128)
T ss_dssp             CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCC
T ss_pred             HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCC
Confidence            3578899999886556665542221  23444555542222111  12477899999999999999

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=94.05  E-value=0.45  Score=32.76  Aligned_cols=60  Identities=12%  Similarity=0.112  Sum_probs=37.7

Q ss_pred             HHHHHHHHhhcCCCCCeEEEEcC------CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCC
Q psy4279           4 NKQKELQDLGRDPPAQCSAGPVG------DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP   64 (129)
Q Consensus         4 RL~kEl~~l~~~~~~~~~~~p~~------~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP   64 (129)
                      +-..|+..|..--++.+.+....      +....+.+.|....+ .-..-...+.|.+|++||..+|
T Consensus        14 ~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P   79 (138)
T 2yz0_A           14 IQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAP   79 (138)
T ss_dssp             HHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCC
T ss_pred             HHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCC
Confidence            45678888877544445432111      124567777764332 1123477899999999999999

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.33  E-value=0.4  Score=32.68  Aligned_cols=63  Identities=17%  Similarity=0.061  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHhhcCCCC--CeEEEE-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC
Q psy4279           2 KKNKQKELQDLGRDPPA--QCSAGP-VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK   65 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~--~~~~~p-~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~   65 (129)
                      ..+...|+..|..--+.  .+.+.. ...+...+.+.|...... =..-.+.+.|.+|.+||..+|.
T Consensus         9 ~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~   74 (128)
T 2ebk_A            9 AEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPG   74 (128)
T ss_dssp             CHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCe
Confidence            44667888888774322  343321 123346777777643211 0123788999999999999993

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=90.78  E-value=1.3  Score=30.24  Aligned_cols=62  Identities=15%  Similarity=0.028  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEcCC-----CceeEEEEEeCCCCCCC-CCcEEEEEEEcCCCCCCCCC
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPY-QGGVFFLTIHFPTDYPFKPP   64 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~~~-----nl~~w~~~i~gp~~tpY-~gg~y~~~i~fp~~YP~~pP   64 (129)
                      .+.+.|+..|..--++.+.......     ....+.+.|....++-- ..-.+.+.|.||++||..+|
T Consensus        13 e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P   80 (137)
T 1ukx_A           13 QRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVP   80 (137)
T ss_dssp             HHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCC
T ss_pred             HHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCC
Confidence            3467788888875455554432111     13456666652111100 12368899999999999999

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=87.76  E-value=2.2  Score=31.81  Aligned_cols=52  Identities=17%  Similarity=0.261  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCC
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP   64 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP   64 (129)
                      .+|.+|+.++.=+.     +.-.++++...++.+...     .|....++|.++.+||.++|
T Consensus         4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P   55 (186)
T 3zqs_A            4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESP   55 (186)
T ss_dssp             CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCC
T ss_pred             HHHHHHHHHhCCce-----eeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCC
Confidence            47889999883322     222367888999988843     35789999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	6e-29
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	1e-27
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	4e-27
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-26
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-26
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	1e-24
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	1e-23
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-22
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	2e-21
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	9e-21
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	2e-20
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-20
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	2e-19
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	2e-19
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	3e-19
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	4e-19
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	5e-19
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	6e-19
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	6e-19
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	8e-19
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	9e-19
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	9e-19
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	3e-18
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	6e-18
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	3e-17
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	3e-16
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	4e-15
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	6e-15
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	2e-13
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	1e-12
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	4e-12

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score =  100 bits (250), Expect = 6e-29
 Identities = 94/122 (77%), Positives = 95/122 (77%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDYPFKP  
Sbjct: 7   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP-- 64

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI
Sbjct: 65  -------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 99

Query: 126 SK 127
           SK
Sbjct: 100 SK 101

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (239), Expect = 1e-27
 Identities = 41/131 (31%), Positives = 54/131 (41%), Gaps = 31/131 (23%)

Query: 1   MKKNKQKELQDLGRDPPAQCSAGP--VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTD 58
           M+K  QKEL  L  DPP   +     V + +  W   + G P + Y+G  F L   F + 
Sbjct: 4   MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 63

Query: 59  YPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTR--IYHPNINSNGSICLDILR 116
           YPF                             P+V FT      HP++ SNG ICL IL 
Sbjct: 64  YPFDS---------------------------PQVMFTGENIPVHPHVYSNGHICLSILT 96

Query: 117 SQWSPALTISK 127
             WSPAL++  
Sbjct: 97  EDWSPALSVQS 107

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 95.5 bits (237), Expect = 4e-27
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 41/136 (30%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
           +++L +L ++P    SAG + D DL+ W+  I+GPPD+ Y+GGVF   + FP DYP +P 
Sbjct: 5   RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP- 63

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------- 117
                                     PK+ F T I+HPN++ NG +C+ IL         
Sbjct: 64  --------------------------PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYG 97

Query: 118 ------QWSPALTISK 127
                 +W P  T+  
Sbjct: 98  YEKPEERWLPIHTVET 113

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 93.2 bits (231), Expect = 2e-26
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 28/123 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QKEL +   +PP  C+     +++  W    +G  ++ Y   V+ L I FP DYP KP  
Sbjct: 4   QKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP-- 61

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALT 124
                                    P V F  +   H ++ SNG ICL +L   ++P+L+
Sbjct: 62  -------------------------PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLS 96

Query: 125 ISK 127
           IS 
Sbjct: 97  ISG 99

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 94.1 bits (233), Expect = 2e-26
 Identities = 65/122 (53%), Positives = 75/122 (61%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QKEL ++  DPP  CSAGP GD+++ W++TI+GPP S Y+GGVFFL I F  DYPFKPPK
Sbjct: 8   QKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPK 67

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                      V F TRIYH NINS G ICLDIL+  WSPALTI
Sbjct: 68  ---------------------------VTFRTRIYHCNINSQGVICLDILKDNWSPALTI 100

Query: 126 SK 127
           SK
Sbjct: 101 SK 102

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 90.2 bits (223), Expect = 1e-24
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 41/136 (30%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
           +K+L D+ R P    SAG V D D++ W+  ++GPPD+ Y+GG F   + FP DYP KP 
Sbjct: 6   KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP- 64

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------- 117
                                     PK+ F + I+HPNI+  G++C+ IL         
Sbjct: 65  --------------------------PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWG 98

Query: 118 ------QWSPALTISK 127
                 +W P  T+  
Sbjct: 99  YERPEERWLPVHTVET 114

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 87.5 bits (216), Expect = 1e-23
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 27/121 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           Q+EL+ L        +A P GD+LF W AT+ GP D+ Y+   + LT+ FP+DYP+KPP 
Sbjct: 15  QQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPV 74

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                        FTT  +HPN++ +G+ICLDIL+  W+ +  +
Sbjct: 75  VK---------------------------FTTPCWHPNVDQSGNICLDILKENWTASYDV 107

Query: 126 S 126
            
Sbjct: 108 R 108

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 83.2 bits (205), Expect = 4e-22
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            ++ + +  D P   SA P+ D++  W A I+GP D+PY+ G F L + F  +YP KP  
Sbjct: 9   MRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP-- 66

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    P V F + ++HPN+ +NG ICLDIL+++W+P   +
Sbjct: 67  -------------------------PHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDV 101

Query: 126 SK 127
           + 
Sbjct: 102 AS 103

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-21
 Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 27/127 (21%)

Query: 1   MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
           + +   KE Q L  +P     A P   +  ++   I GP DSP++GG F L +  P +YP
Sbjct: 3   LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP 62

Query: 61  FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
              PK                             F T+IYHPN++  G ICLDIL+ +WS
Sbjct: 63  MAAPKV---------------------------RFMTKIYHPNVDKLGRICLDILKDKWS 95

Query: 121 PALTISK 127
           PAL I  
Sbjct: 96  PALQIRT 102

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 79.2 bits (195), Expect = 9e-21
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 36/130 (27%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
            +EL++  +       +  + DD    L  W   I+GPP + Y+  ++ L I     YP 
Sbjct: 11  LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 70

Query: 62  KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI----CLDILRS 117
            P                           P V F T+I    +NS+  +     + +L +
Sbjct: 71  AP---------------------------PFVRFVTKINMNGVNSSNGVVDPRAISVL-A 102

Query: 118 QWSPALTISK 127
           +W  + +I  
Sbjct: 103 KWQNSYSIKV 112

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 78.5 bits (193), Expect = 2e-20
 Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 33/128 (25%)

Query: 6   QKELQDLGRD-PPAQCSAGPVGDD---LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
            +EL+   +   P  CS G    D   +  W  TI+GPP S ++  ++ L+I    +YP 
Sbjct: 10  LEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPD 69

Query: 62  KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILR-SQW 119
            P                           PKV F ++I  P +N   G +  D      W
Sbjct: 70  SP---------------------------PKVTFISKINLPCVNPTTGEVQTDFHTLRDW 102

Query: 120 SPALTISK 127
             A T+  
Sbjct: 103 KRAYTMET 110

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 78.3 bits (192), Expect = 4e-20
 Identities = 47/122 (38%), Positives = 62/122 (50%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KE + L  DP    +A P  D+L ++Q TI GP  SPY+ G+F L ++ P DYP +   
Sbjct: 9   IKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA-- 66

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    PKV F T+IYHPNI+  G ICLD+L++ WSPAL I
Sbjct: 67  -------------------------PKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI 101

Query: 126 SK 127
             
Sbjct: 102 RT 103

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 2e-19
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 30/125 (24%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            ++  DL  +     +A PV +D+  W+  I G  +S +QG VF LTIHF ++Y + PP 
Sbjct: 10  HRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPV 69

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRS--QWSPA 122
                                        F T  +HPN++   G  C+D L +  +W+  
Sbjct: 70  VK---------------------------FITIPFHPNVDPHTGQPCIDFLDNPEKWNTN 102

Query: 123 LTISK 127
            T+S 
Sbjct: 103 YTLSS 107

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 76.3 bits (187), Expect = 2e-19
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            ++ + L  DPPA  S  P  D++  W+A I GP ++P++ G F L++ F  +YP KP  
Sbjct: 9   MRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP-- 66

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                    P V F ++++HPN+ ++GSICLDIL+++WSP   +
Sbjct: 67  -------------------------PTVKFISKMFHPNVYADGSICLDILQNRWSPTYDV 101

Query: 126 SK 127
           + 
Sbjct: 102 AA 103

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 3e-19
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 29/121 (23%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           QK++ +L        S     DDL +++  I  P +  Y+ G F  +      YP  PPK
Sbjct: 9   QKDINELNLPKTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPK 66

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                          T +YHPNI+  G++CL+ILR  W P LTI
Sbjct: 67  VK---------------------------CETMVYHPNIDLEGNVCLNILREDWKPVLTI 99

Query: 126 S 126
           +
Sbjct: 100 N 100

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 4e-19
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 28/123 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
           +++   + +DP     A P+  ++  W   + GP  +PY+GG +   + FP ++PFKP  
Sbjct: 7   KQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP-- 64

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSICLDILRSQWSPALT 124
                                    P +   T       N+       D     W+PA +
Sbjct: 65  -------------------------PSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWS 99

Query: 125 ISK 127
           +S 
Sbjct: 100 VST 102

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 5e-19
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 34/129 (26%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
            +E +   +D P    A P  +     +L +W+  I G   +P++GG+F L + F  DYP
Sbjct: 8   AQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYP 67

Query: 61  FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--Q 118
             PPK                             F   ++HPN+  +G++ L IL     
Sbjct: 68  SSPPKCK---------------------------FEPPLFHPNVYPSGTVSLSILEEDKD 100

Query: 119 WSPALTISK 127
           W PA+TI +
Sbjct: 101 WRPAITIKQ 109

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 6e-19
 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 33/133 (24%)

Query: 1   MKKNK--QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTD 58
           M++    ++EL  L  +PP   +     D +   +A I+G  ++PY+ GVF L +  P  
Sbjct: 1   MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER 60

Query: 59  YPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS- 117
           YPF+PP+                             F T IYHPNI+S G ICLD+L+  
Sbjct: 61  YPFEPPQI---------------------------RFLTPIYHPNIDSAGRICLDVLKLP 93

Query: 118 ---QWSPALTISK 127
               W P+L I+ 
Sbjct: 94  PKGAWRPSLNIAT 106

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 75.2 bits (184), Expect = 6e-19
 Identities = 49/136 (36%), Positives = 63/136 (46%), Gaps = 41/136 (30%)

Query: 6   QKELQDLGR-------------DPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLT 52
            KEL D+ +                   SA  VG D+  W+  I GP  +PY+GG F L 
Sbjct: 7   LKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLD 66

Query: 53  IHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSIC 111
           I  P DYP+ P                           PK+ F T+I+HPNI+S  G+IC
Sbjct: 67  IVIPPDYPYNP---------------------------PKMKFVTKIWHPNISSQTGAIC 99

Query: 112 LDILRSQWSPALTISK 127
           LDIL+ +WSPALTI  
Sbjct: 100 LDILKHEWSPALTIRT 115

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 8e-19
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 27/128 (21%)

Query: 1   MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
           + K  Q+EL  L        SA P  D+LF W  TI G   + Y+   + L++ FP+ YP
Sbjct: 2   VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYP 61

Query: 61  FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
           +                             P V F T  YHPN+++ G+I LDIL+ +WS
Sbjct: 62  YNA---------------------------PTVKFLTPCYHPNVDTQGNISLDILKEKWS 94

Query: 121 PALTISKA 128
               +   
Sbjct: 95  ALYDVRTI 102

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 9e-19
 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 27/121 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KE+  L  DPP      P  +DL   Q TI GP  +PY GG+F + +    D+P  PPK
Sbjct: 12  YKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPK 71

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                        F T+I+HPN+ +NG IC+++L+  W+  L I
Sbjct: 72  ---------------------------GYFLTKIFHPNVGANGEICVNVLKRDWTAELGI 104

Query: 126 S 126
            
Sbjct: 105 R 105

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 74.4 bits (182), Expect = 9e-19
 Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 29/124 (23%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            KE+Q +  DP A  +   V + D+ H + T +GPP +PY+GG F + I  P +YPFKP 
Sbjct: 7   MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKP- 65

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI-CLDILRSQWSPAL 123
                                     PK+ F T++YHPNI+S     CLDIL++ WSP +
Sbjct: 66  --------------------------PKMQFDTKVYHPNISSVTGAICLDILKNAWSPVI 99

Query: 124 TISK 127
           T+  
Sbjct: 100 TLKS 103

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 3e-18
 Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 24/127 (18%)

Query: 3   KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFL--TIHFPTDYP 60
             +   +  L +D      +    D        + G    PY+G  + +   +     YP
Sbjct: 20  VRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYP 79

Query: 61  FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
           + PP                                T     ++++NG I L  L     
Sbjct: 80  YNPPICFVKPTSSM----------------------TIKTGKHVDANGKIYLPYLHEWKH 117

Query: 121 PALTISK 127
           P   +  
Sbjct: 118 PQSDLLG 124

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 72.9 bits (178), Expect = 6e-18
 Identities = 46/136 (33%), Positives = 57/136 (41%), Gaps = 41/136 (30%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            KELQ L +D P    AGP  + ++F W   I GPPD+PY  GVF   + FP DYP  PP
Sbjct: 9   LKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPP 68

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQW----- 119
           K                           + FT  I HPNI  NG +C+ IL S       
Sbjct: 69  K---------------------------LTFTPSILHPNIYPNGEVCISILHSPGDDPNM 101

Query: 120 --------SPALTISK 127
                   SP  ++ K
Sbjct: 102 YELAEERWSPVQSVEK 117

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 3e-17
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 30/124 (24%)

Query: 6   QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
            KEL+++ +          V + +L  WQ  I  P + PY  G F + I+FP +YPFKPP
Sbjct: 5   MKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPP 63

Query: 65  KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPAL 123
           K                             F T+IYHPNI+  G +CL ++ ++ W PA 
Sbjct: 64  KIT---------------------------FKTKIYHPNIDEKGQVCLPVISAENWKPAT 96

Query: 124 TISK 127
              +
Sbjct: 97  KTDQ 100

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 3e-16
 Identities = 38/122 (31%), Positives = 49/122 (40%), Gaps = 27/122 (22%)

Query: 6   QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
            KEL+DL + PP         D        ++ P   PY    F L I FP +YPFKPP 
Sbjct: 6   VKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPM 65

Query: 66  PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
                                        FTT+IYHPN++ NG ICL I+ S+     T 
Sbjct: 66  I---------------------------KFTTKIYHPNVDENGQICLPIISSENWKPCTK 98

Query: 126 SK 127
           + 
Sbjct: 99  TC 100

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.6 bits (159), Expect = 4e-15
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 31/126 (24%)

Query: 6   QKELQDLGRDPP---AQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
           ++E +++ +       Q     V ++    +  I GPPD+PY+GG + L I  P  YPF 
Sbjct: 10  KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 69

Query: 63  PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
           PPK                             F T+I+HPNI+S  G+ICLDIL+ QW+ 
Sbjct: 70  PPKV---------------------------RFITKIWHPNISSVTGAICLDILKDQWAA 102

Query: 122 ALTISK 127
           A+T+  
Sbjct: 103 AMTLRT 108

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 61.3 bits (148), Expect = 2e-13
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 32/127 (25%)

Query: 2   KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
            + ++ +   L              D +  +     GP  +PY+ G + L +  P+DYPF
Sbjct: 2   NRRREMDYMRLCNSTRK----VYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPF 57

Query: 62  KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWS 120
           K P                            + F  RI HPN++  +GS+CLD++   W+
Sbjct: 58  KSPS---------------------------IGFCNRILHPNVDERSGSVCLDVINQTWT 90

Query: 121 PALTISK 127
           P   +  
Sbjct: 91  PMYQLEN 97

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.5 bits (141), Expect = 1e-12
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 19/95 (20%)

Query: 36  IMGPPDSPYQGGV---FFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPK 92
           I G   +   G       + +  P+ YP KPP                 +S         
Sbjct: 58  IYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPF----------------ISINLENFDMN 101

Query: 93  VAFTTRIYHPNINSNGSICLDILRSQWSPALTISK 127
              ++      I+SNG I L IL      A+ +  
Sbjct: 102 TISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIM 136

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 4e-12
 Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 42/138 (30%)

Query: 6   QKELQDLGRDPPAQC---SAGPVGDDLFHWQATIMG-PPDSPYQGGV-----------FF 50
            KEL+D+ R    +    S   + D L+ W   +    PDSP    +             
Sbjct: 10  MKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYIL 69

Query: 51  LTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI 110
           L   F  ++PF PP                                  +    +   G++
Sbjct: 70  LNFSFKDNFPFDPPFVR--------------------------VVLPVLSGGYVLGGGAL 103

Query: 111 CLDILRSQ-WSPALTISK 127
           C+++L  Q WS A +I  
Sbjct: 104 CMELLTKQGWSSAYSIES 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.97
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.97
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.97
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.77
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.63
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	96.46
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	96.13
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	85.56

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-39  Score=225.64  Aligned_cols=101  Identities=41%  Similarity=0.789  Sum_probs=95.7

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEE--EcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAG--PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQP   78 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~--p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~   78 (129)
                      |+|||+||+++|++++++|+.+.  +.+||+++|+++|.||+||||+||.|+++|.||++||++||              
T Consensus         4 ~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP--------------   69 (117)
T d2a7la1           4 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSP--------------   69 (117)
T ss_dssp             SCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCC--------------
T ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCC--------------
Confidence            57999999999999999999886  45689999999999999999999999999999999999999              


Q ss_pred             ccccccccCCCCCeEEeeecc--ccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          79 KVKVSRKYPLKLPKVAFTTRI--YHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        79 ~~~~~~~~~~~~p~v~f~t~i--~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                   +|+|.|++  +||||+++|+||+|+|+++|+|++||++|
T Consensus        70 -------------~v~F~t~~~~~Hpnv~~~G~iCl~~l~~~Wsp~~ti~~v  108 (117)
T d2a7la1          70 -------------QVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSV  108 (117)
T ss_dssp             -------------EEEEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHH
T ss_pred             -------------EEEEeCCCccccccCcCCCeEEeecCcCCCCCcCcHHHH
Confidence                         99999976  89999999999999999999999999886

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=6.8e-38  Score=217.72  Aligned_cols=98  Identities=36%  Similarity=0.699  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccccc
Q psy4279           4 NKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVS   83 (129)
Q Consensus         4 RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~~~   83 (129)
                      ||+||+++|++++++|+.+.+.++|+++|++.|.||++|||+||.|+++|.||++||++||                   
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP-------------------   62 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPP-------------------   62 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-------------------
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCC-------------------
Confidence            8999999999999999999999999999999999999999999999999999999999999                   


Q ss_pred             cccCCCCCeEEeeecc-ccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          84 RKYPLKLPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        84 ~~~~~~~p~v~f~t~i-~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                              +|+|.|++ +||||+++|+||+|+|+++|+|++||++|
T Consensus        63 --------~v~F~t~~~~hpni~~~G~iCl~il~~~Wsp~~ti~~v  100 (109)
T d2fo3a1          63 --------IVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGL  100 (109)
T ss_dssp             --------EEEECSSCCCBTTBCTTSBBCCGGGTTTCCTTCCHHHH
T ss_pred             --------eEEEEeccccCceECCCCeEEeecccCCCCccCCHHHH
Confidence                    99999986 89999999999999999999999999876

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=4.7e-37  Score=217.60  Aligned_cols=99  Identities=41%  Similarity=0.960  Sum_probs=93.9

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEc-CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~-~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      -||+||+++|++++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||                 
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP-----------------   64 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP-----------------   64 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCC-----------------
Confidence            38999999999999999999885 468999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCC-------------CCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-------------~~Wsp~~ti~~v  128 (129)
                                +|+|.|+++||||+.+|.||+|+|+             ++|+|++||++|
T Consensus        65 ----------~v~f~t~i~Hpni~~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~i  114 (125)
T d2awfa1          65 ----------KMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETI  114 (125)
T ss_dssp             ----------EEEECSCCCCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHH
T ss_pred             ----------eEEecCCCCccccCCCCEEEeccccCccccccccccccCCcCccCcHHHH
Confidence                      9999999999999999999999994             569999999986

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=2.9e-37  Score=224.05  Aligned_cols=101  Identities=37%  Similarity=0.687  Sum_probs=98.4

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      |.|||+||+++|++++++|+.+.+.++|+++|+++|.|++||||+||.|+++|.||++||++||                
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP----------------   65 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAP----------------   65 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCc----------------
Confidence            4799999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+++|.||+++|.++|+|++||++|
T Consensus        66 -----------~v~f~t~i~HPnV~~~G~icl~~l~~~W~p~~~i~~i  102 (146)
T d1i7ka_          66 -----------TVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTI  102 (146)
T ss_dssp             -----------EEEESSCCCSTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------eeeecCCCCcccCCCCCccccccccccCCCCcCHHHH
Confidence                       9999999999999999999999999999999999875

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=4.2e-37  Score=225.49  Aligned_cols=101  Identities=43%  Similarity=0.829  Sum_probs=98.4

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      ++|||+||+++|++++++|+.+.|.++|+++|+++|.||+||||+||.|+++|.||++||++||                
T Consensus        10 ~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP----------------   73 (156)
T d2e2ca_          10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPP----------------   73 (156)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC----------------
T ss_pred             HHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCc----------------
Confidence            3689999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+.+|.||+++|.+.|+|++||.+|
T Consensus        74 -----------~v~f~t~i~Hpnv~~~G~icl~~l~~~Wsp~~~i~~v  110 (156)
T d2e2ca_          74 -----------VVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTI  110 (156)
T ss_dssp             -----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------eeeccccCcCCCCCCCCCccccccCCCCCCcccHHHH
Confidence                       9999999999999999999999999999999999876

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=5.2e-37  Score=221.57  Aligned_cols=101  Identities=94%  Similarity=1.558  Sum_probs=98.3

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.|||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||                
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP----------------   65 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPP----------------   65 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC----------------
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCc----------------
Confidence            3599999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+++|.||+++|.+.|+|++|+.+|
T Consensus        66 -----------~v~f~t~i~HPnV~~~G~iCl~~l~~~w~p~~~i~~I  102 (147)
T d1z2ua1          66 -----------KVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKV  102 (147)
T ss_dssp             -----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------eEEEecCCceeeECCCCCEeeehhcccCCCCCCHHHH
Confidence                       9999999999999999999999999999999999876

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=5.5e-37  Score=222.62  Aligned_cols=101  Identities=39%  Similarity=0.951  Sum_probs=98.3

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      ++|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||                
T Consensus         4 a~rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP----------------   67 (149)
T d1z3da1           4 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPP----------------   67 (149)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCc----------------
Confidence            3699999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+.+|.||+++|.+.|+|++||.+|
T Consensus        68 -----------~v~f~t~i~HPnI~~~G~iCl~~l~~~w~p~~~i~~i  104 (149)
T d1z3da1          68 -----------TVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAI  104 (149)
T ss_dssp             -----------EEEESSCCCCTTBCTTCBBCCGGGTTSCCTTCCHHHH
T ss_pred             -----------EEEecCcccceeEcCCCCEEeccccccCCCCCCHHHH
Confidence                       9999999999999999999999999999999999875

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=220.22  Aligned_cols=100  Identities=66%  Similarity=1.237  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||                 
T Consensus         4 ~kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP-----------------   66 (148)
T d1y6la_           4 AKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPP-----------------   66 (148)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCc-----------------
Confidence            699999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|+++||||+++|.||+++|.+.|+|++||.+|
T Consensus        67 ----------~v~f~t~i~HPnv~~~G~iCl~~l~~~W~p~~~l~~i  103 (148)
T d1y6la_          67 ----------KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKV  103 (148)
T ss_dssp             ----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             ----------EEEEeCCCcCceECCCCeEEEEecCCcCCCcEeHHHH
Confidence                      9999999999999999999999999999999999875

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=1.2e-36  Score=220.89  Aligned_cols=101  Identities=38%  Similarity=0.909  Sum_probs=98.5

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      |+|||++|+++|+++++.|+.+.|.++|+++|+++|.||++|||+||+|+++|.||++||++||                
T Consensus         4 A~kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP----------------   67 (153)
T d1ayza_           4 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPP----------------   67 (153)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCC----------------
Confidence            4799999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+.+|.||+++|.+.|+|++||.+|
T Consensus        68 -----------~v~f~t~i~HPnI~~~G~icl~~l~~~W~p~~~i~~i  104 (153)
T d1ayza_          68 -----------HVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASI  104 (153)
T ss_dssp             -----------EEEESSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------eeeeccCCCccCCCCCCccccccccccCCCcCcHHHH
Confidence                       9999999999999999999999999999999999875

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=2.2e-36  Score=220.54  Aligned_cols=101  Identities=48%  Similarity=0.863  Sum_probs=98.6

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      |.|||++|+++|++++++|+.+.|.++|+++|+++|.||++|||+||.|+++|.||++||++||                
T Consensus         4 ~~rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP----------------   67 (152)
T d1jata_           4 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAP----------------   67 (152)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCC----------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCc----------------
Confidence            5799999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+.+|.+|++++.+.|+|++||.+|
T Consensus        68 -----------~v~F~t~i~HPnI~~~G~icl~~~~~~W~p~~~i~~i  104 (152)
T d1jata_          68 -----------KVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTV  104 (152)
T ss_dssp             -----------EEEECSCCCBTTBCTTCCBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------EEEecCCCCCCcCCCCCCeeeccccccCCchhHHHHH
Confidence                       9999999999999999999999999999999999875

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=3.8e-36  Score=218.37  Aligned_cols=101  Identities=43%  Similarity=0.815  Sum_probs=98.1

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      +.|||+||+++|+++++.|+.+.|.++|+++|+++|.||+||||+||+|+|+|.||++||++||                
T Consensus         3 ~~kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP----------------   66 (149)
T d1j7db_           3 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP----------------   66 (149)
T ss_dssp             SCHHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred             ccHHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCc----------------
Confidence            3589999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+++|.||+++|.+.|+|++|+.+|
T Consensus        67 -----------~v~f~t~i~HPni~~~G~icl~~l~~~w~p~~~i~~i  103 (149)
T d1j7db_          67 -----------KVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTV  103 (149)
T ss_dssp             -----------EEEECSCCCBTTBCTTCBBCCGGGTTSCCTTSCHHHH
T ss_pred             -----------eeeecCCCCCceECCCCcEehHHhcCCCCCCccHHHH
Confidence                       9999999999999999999999999999999999875

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=220.78  Aligned_cols=100  Identities=38%  Similarity=0.754  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .|||+||+++|++++++|+.+.|.++|+++|+++|.|++||||+||.|+++|.||++||++||                 
T Consensus         8 ~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP-----------------   70 (151)
T d1zdna1           8 IRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPP-----------------   70 (151)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCc-----------------
Confidence            699999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                +|+|.|+++||||+++|.||++++.++|+|++||.+|
T Consensus        71 ----------~v~f~t~i~HPnI~~~G~ic~~~l~~~W~p~~~l~~i  107 (151)
T d1zdna1          71 ----------KGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHV  107 (151)
T ss_dssp             ----------EEEESSCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHH
T ss_pred             ----------eeecCCCCCCceecCCCCcccccccccCCccccHHHH
Confidence                      9999999999999999999999999999999999875

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=5.7e-36  Score=217.71  Aligned_cols=100  Identities=40%  Similarity=0.828  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|.+++++|+++.|.++|+++|+++|.||+||||+||+|+++|.||++||++||                 
T Consensus         4 ~~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP-----------------   66 (154)
T d1yh2a1           4 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPP-----------------   66 (154)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred             HHHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCc-----------------
Confidence            489999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceecCCCcEEeccCC----CCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~----~~Wsp~~ti~~v  128 (129)
                                +|+|.|+++||||+++|.||+++|.    +.|+|++|+.+|
T Consensus        67 ----------~v~f~t~i~HPnV~~~g~icl~~l~~~~~~~w~p~~~i~~i  107 (154)
T d1yh2a1          67 ----------QIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATV  107 (154)
T ss_dssp             ----------EEEESSCCCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHH
T ss_pred             ----------eeeccCCCCcCCcCCCCCcccccccCCccccCCccccHHHH
Confidence                      9999999999999999999999996    579999999875

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=8.8e-36  Score=219.04  Aligned_cols=101  Identities=47%  Similarity=0.956  Sum_probs=95.4

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEc-CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~-~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      ++|||++|+++|++++++|+.+.|. ++|+++|+++|.||+||||+||.|+++|.||++||++||               
T Consensus         4 a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP---------------   68 (164)
T d2ucza_           4 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPP---------------   68 (164)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC---------------
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCC---------------
Confidence            4799999999999999999999985 579999999999999999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecCCCcEEeccCC-------------CCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-------------~~Wsp~~ti~~v  128 (129)
                                  +|+|.|+++||||+.+|.||+|+|+             +.|+|++||++|
T Consensus        69 ------------~v~f~t~i~HPnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~i  118 (164)
T d2ucza_          69 ------------KLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKI  118 (164)
T ss_dssp             ------------EEEESSCCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHH
T ss_pred             ------------eEEeecCceeceEcCCCCeeeccccCccccccccccccccCCccccHHHH
Confidence                        9999999999999999999999994             469999999865

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=215.83  Aligned_cols=100  Identities=35%  Similarity=0.692  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK   81 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~   81 (129)
                      .+||+||+++|++++++|+++.|.++|+++|+++|.||++|||+||.|+++|.||++||++||                 
T Consensus         6 ~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP-----------------   68 (148)
T d1yrva1           6 YLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPP-----------------   68 (148)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCC-----------------
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCc-----------------
Confidence            479999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             cccccCCCCCeEEeeeccccceec-CCCcEEeccCC--CCcccccCcccc
Q psy4279          82 VSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILR--SQWSPALTISKA  128 (129)
Q Consensus        82 ~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~--~~Wsp~~ti~~v  128 (129)
                                +|+|.|+++||||+ .+|.||+++|+  ++|+|++||++|
T Consensus        69 ----------~v~f~t~i~HpnV~~~~G~iC~~~l~~~~~W~p~~tl~~v  108 (148)
T d1yrva1          69 ----------VVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSI  108 (148)
T ss_dssp             ----------EEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHH
T ss_pred             ----------eeeeccccccCceecCcccccccccCchhhcCccccHHHH
Confidence                      99999999999999 68999999995  689999999876

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=215.54  Aligned_cols=101  Identities=34%  Similarity=0.729  Sum_probs=96.2

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCC-----CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCC
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPL   75 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~-----nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~   75 (129)
                      +.+||+||+++|+++++.|+.+.|.++     |+++|+++|.|++||||+||.|+|+|.||++||++||           
T Consensus         3 a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP-----------   71 (156)
T d2uyza1           3 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPP-----------   71 (156)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------
T ss_pred             HHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCc-----------
Confidence            369999999999999999999999875     8999999999999999999999999999999999999           


Q ss_pred             CCcccccccccCCCCCeEEeeeccccceecCCCcEEeccCC--CCcccccCcccc
Q psy4279          76 KQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKA  128 (129)
Q Consensus        76 ~~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~--~~Wsp~~ti~~v  128 (129)
                                      +|+|.|+++||||+.+|.+|+++|.  ++|+|++||.+|
T Consensus        72 ----------------~v~f~t~i~HPnV~~~G~icl~~l~~~~~W~p~~ti~~i  110 (156)
T d2uyza1          72 ----------------KCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQI  110 (156)
T ss_dssp             ----------------EEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHH
T ss_pred             ----------------eeeeccccccccccccceeeecccCcccccCCcccHHHH
Confidence                            9999999999999999999999996  479999999876

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=208.65  Aligned_cols=100  Identities=39%  Similarity=0.810  Sum_probs=93.9

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~-~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      |++||+||+++|++++++|+.+.+.+ +|+..|++.| |+++|||+||.|+++|.||++||++||               
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP---------------   64 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPP---------------   64 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCC---------------
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCc---------------
Confidence            67999999999999999999998875 5899999866 899999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecCCCcEEeccCC-CCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-SQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-~~Wsp~~ti~~v  128 (129)
                                  +|+|.|+++||||+++|.||+++|. +.|+|++||.+|
T Consensus        65 ------------~v~f~t~i~HpnI~~~G~icl~~l~~~~W~p~~~i~~i  102 (150)
T d1wzva1          65 ------------MIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQV  102 (150)
T ss_dssp             ------------EEEESSCCCBTTBCTTCBCCCGGGCTTTCCTTCCHHHH
T ss_pred             ------------eeeccCCCCcceECCCCCcccccccccCCCchhHHHHH
Confidence                        9999999999999999999999996 579999999875

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=208.26  Aligned_cols=99  Identities=37%  Similarity=0.832  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEc-CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~-~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      .|||+||+++|.+++.+|+.+.+. ++|+++|+++| ||++|||+||.|+++|.||++||++||                
T Consensus         1 ~rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP----------------   63 (144)
T d1c4zd_           1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPP----------------   63 (144)
T ss_dssp             CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCC----------------
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCc----------------
Confidence            489999999999999999987775 57999999998 999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCC-CCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-SQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+.+|.||+++|. +.|+|++++.+|
T Consensus        64 -----------~v~f~t~i~HPnV~~~G~icl~~l~~~~w~p~~~i~~i  101 (144)
T d1c4zd_          64 -----------KITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQV  101 (144)
T ss_dssp             -----------EEEESSCCCCTTBCTTCBBCCTTTSSSSCCTTCCHHHH
T ss_pred             -----------eeeccCCCCCcCCccCCccccccccCCCCCCcccHHHH
Confidence                       9999999999999999999999998 469999998765

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=5.1e-34  Score=206.70  Aligned_cols=100  Identities=47%  Similarity=0.965  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEE-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGP-VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p-~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      .|||+||+++|++++++|+++.+ .++|+++|+++|.||+||||+||.|+++|.||++||++||                
T Consensus         3 ~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP----------------   66 (149)
T d1fzya_           3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP----------------   66 (149)
T ss_dssp             HHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC----------------
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCc----------------
Confidence            58999999999999999999986 4579999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecC-CCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+. +|.+|++++.+.|+|++||.+|
T Consensus        67 -----------~v~f~t~i~HpnI~~~~~~~~~~~~~~~W~p~~ti~~i  104 (149)
T d1fzya_          67 -----------KMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSA  104 (149)
T ss_dssp             -----------EEEESSCCCBTTBCTTTCCBCCGGGTTTCCTTCCHHHH
T ss_pred             -----------EEEecCCCcCCcccCCcceeechhhcccCCCcCCHHHH
Confidence                       999999999999996 7899999999999999999876

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5e-34  Score=208.06  Aligned_cols=100  Identities=41%  Similarity=0.872  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHhhcC---CCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCc
Q psy4279           2 KKNKQKELQDLGRD---PPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQP   78 (129)
Q Consensus         2 ~rRL~kEl~~l~~~---~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~   78 (129)
                      .|||+||+++|+++   ...++.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||              
T Consensus         6 ~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP--------------   71 (154)
T d2bepa1           6 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPP--------------   71 (154)
T ss_dssp             HHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC--------------
T ss_pred             HHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCC--------------
Confidence            58999999999886   4678999999999999999999999999999999999999999999999              


Q ss_pred             ccccccccCCCCCeEEeeeccccceecC-CCcEEeccCCCCcccccCcccc
Q psy4279          79 KVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        79 ~~~~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                   +|+|.|+++||||+. +|.||++++.++|+|++||++|
T Consensus        72 -------------~v~f~t~i~Hpni~~~~g~ic~~~~~~~W~p~~~i~~i  109 (154)
T d2bepa1          72 -------------KVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV  109 (154)
T ss_dssp             -------------EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             -------------cceecccCCCCCeeCCCCccccccccccCCCcCCHHHH
Confidence                         999999999999996 8999999999999999999875

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=6.1e-34  Score=208.77  Aligned_cols=100  Identities=41%  Similarity=0.904  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~-~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      ..||+||+++|.+++++|+.+.+.+ +|+++|+++|.||++|||+||+|+++|.||++||++||                
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP----------------   65 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPP----------------   65 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCC----------------
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCC----------------
Confidence            4699999999999999999999865 57999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEeccCCC-------------CcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~-------------~Wsp~~ti~~v  128 (129)
                                 +|+|.|++|||||+.+|.||+++|.+             .|+|++||.+|
T Consensus        66 -----------~v~f~t~i~HPnI~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~i  115 (161)
T d1pzva_          66 -----------KMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETI  115 (161)
T ss_dssp             -----------EEEECSCCCCTTBCTTSBBCCGGGCCC---------CCSSCCTTCCHHHH
T ss_pred             -----------eEEecCCCCCcccCCCCccchhhcCCcccccccccccccccCccccHHHH
Confidence                       99999999999999999999999953             59999999875

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=8.8e-34  Score=208.74  Aligned_cols=100  Identities=49%  Similarity=0.951  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHhhc-------------CCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCC
Q psy4279           2 KKNKQKELQDLGR-------------DPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPK   68 (129)
Q Consensus         2 ~rRL~kEl~~l~~-------------~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~   68 (129)
                      ++||+||+++|++             +...|+++.+.+||+++|+++|.||+||||+||.|+|+|.||++||++||    
T Consensus         3 ~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP----   78 (161)
T d2f4za1           3 QARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP----   78 (161)
T ss_dssp             HHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----
T ss_pred             hhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCc----
Confidence            5899999999976             34579999999999999999999999999999999999999999999999    


Q ss_pred             cccccCCCCcccccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279          69 VSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                             +|+|.|+++||||+ .+|.||++++.+.|+|++||.+|
T Consensus        79 -----------------------~V~F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~i  116 (161)
T d2f4za1          79 -----------------------KMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTA  116 (161)
T ss_dssp             -----------------------EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHH
T ss_pred             -----------------------EEEecCCCCCCceECCCCCeecCcccccCCCcccHHHH
Confidence                                   99999999999996 58999999999999999999875

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.97  E-value=1.8e-32  Score=200.51  Aligned_cols=99  Identities=27%  Similarity=0.651  Sum_probs=85.8

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      |.|||+||+++|++++++|+++.|.++|+++|+++|.||+||||+||.|+++|.||++||++||                
T Consensus         2 A~kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP----------------   65 (157)
T d2f4wa1           2 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPP----------------   65 (157)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC----------------
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCC----------------
Confidence            4699999999999999999999999999999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecCCCcEEe---ccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICL---DILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl---~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++|+|++  |.+|+   ++++++|+|++||++|
T Consensus        66 -----------~v~f~t~~~~~~~~--g~~~~~~l~~~~~~Wsp~~ti~~i  103 (157)
T d2f4wa1          66 -----------SIYMITPNGRFKCN--TRLCLSITDFHPDTWNPAWSVSTI  103 (157)
T ss_dssp             -----------EEEECSCCSSBCTT--SCBC----------CCTTCCHHHH
T ss_pred             -----------EEEeeCCCcccCCC--CCeeeeeccccCCCCCccCcHHHH
Confidence                       99999987777765  55554   4446889999999886

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.97  E-value=2.2e-32  Score=196.79  Aligned_cols=100  Identities=30%  Similarity=0.589  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHhhcCC-CCCeEEEEcCC---CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279           2 KKNKQKELQDLGRDP-PAQCSAGPVGD---DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ   77 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~-~~~~~~~p~~~---nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~   77 (129)
                      .+||+|||++++|+. +.++++...++   |+++|+++|.|+++|||+||.|+++|.||++||++||             
T Consensus         6 ~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP-------------   72 (136)
T d1jatb_           6 NFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPP-------------   72 (136)
T ss_dssp             HHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCC-------------
T ss_pred             HHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCC-------------
Confidence            479999999999975 56677666554   4999999999999999999999999999999999999             


Q ss_pred             cccccccccCCCCCeEEeeeccccceec-CCCcEEeccCC-CCcccccCcccc
Q psy4279          78 PKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILR-SQWSPALTISKA  128 (129)
Q Consensus        78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~-~~Wsp~~ti~~v  128 (129)
                                    +|+|.|+++||||+ .+|.||++++. ++|+|++||++|
T Consensus        73 --------------~v~f~t~i~HpnV~~~~G~icl~~l~~~~Wsp~~ti~~I  111 (136)
T d1jatb_          73 --------------KVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETL  111 (136)
T ss_dssp             --------------EEEESBCCCCTTBCTTTCBBCTTSHHHHTCCTTCCHHHH
T ss_pred             --------------EEEEeccccccccccCCCeEECCCCcccCcCccCcHHHH
Confidence                          99999999999999 56999999886 689999999876

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.97  E-value=1e-32  Score=202.10  Aligned_cols=98  Identities=36%  Similarity=0.746  Sum_probs=89.3

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEE-EcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK   79 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~-p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~   79 (129)
                      |++||+||+++|++.+  ++.+. +.++|+++|+++| ||++|||+||.|+++|.||++||++||               
T Consensus         4 a~~Rl~kEl~~l~~~~--~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP---------------   65 (157)
T d1y8xa1           4 AQLRIQKDINELNLPK--TCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPP---------------   65 (157)
T ss_dssp             HHHHHHHHHHTCCCCT--TEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCC---------------
T ss_pred             HHHHHHHHHHHhCCCC--CCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCc---------------
Confidence            4689999999997644  55554 3558999999998 899999999999999999999999999               


Q ss_pred             cccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                  +|+|.+++|||||+.+|.||++++.++|+|++||++|
T Consensus        66 ------------~V~f~t~i~HPnv~~~G~ic~~~~~~~W~p~~~i~~i  102 (157)
T d1y8xa1          66 ------------KVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSI  102 (157)
T ss_dssp             ------------EEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred             ------------eeeecccCCCccccccceeeeeecccCCCCCCcHHHH
Confidence                        9999999999999999999999999999999999876

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.97  E-value=3.8e-32  Score=195.90  Aligned_cols=100  Identities=25%  Similarity=0.448  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHhhcCCCCCeEEEEcC----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279           2 KKNKQKELQDLGRDPPAQCSAGPVG----DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ   77 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~~~~~~~p~~----~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~   77 (129)
                      .+||+||+++++|++++++.+.+.+    +|+++|++.|.|+++|||+||.|+++|.||++||++||             
T Consensus         7 ~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP-------------   73 (139)
T d2a4da1           7 NFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP-------------   73 (139)
T ss_dssp             HHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-------------
T ss_pred             hHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCC-------------
Confidence            4799999999999999887776654    37999999999999999999999999999999999999             


Q ss_pred             cccccccccCCCCCeEEeeeccccceecC-CCcEEeccCC--CCcccccCcccc
Q psy4279          78 PKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILR--SQWSPALTISKA  128 (129)
Q Consensus        78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~--~~Wsp~~ti~~v  128 (129)
                                    +|+|.|+++||||+. +|.+|++.|.  ++|+|++||++|
T Consensus        74 --------------~v~F~t~i~HpnV~~~~g~~~~~~l~~l~~Wsp~~ti~~i  113 (139)
T d2a4da1          74 --------------FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVV  113 (139)
T ss_dssp             --------------EEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHH
T ss_pred             --------------EEEEecCcccccCcCCCCEEcceecCcccCCCccCcHHHH
Confidence                          999999999999985 5778776664  579999999876

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.97  E-value=1.2e-31  Score=196.85  Aligned_cols=97  Identities=30%  Similarity=0.779  Sum_probs=89.5

Q ss_pred             ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279           1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV   80 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~   80 (129)
                      ..|||++|+++|.+++..   +.| .||+++|++.|.||++|||+||.|+++|.||++||++||                
T Consensus         1 ~~rr~~~e~~~l~~~~~~---~~~-~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP----------------   60 (158)
T d1yf9a1           1 SNRRREMDYMRLCNSTRK---VYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSP----------------   60 (158)
T ss_dssp             CCHHHHHHHHHHHSSSSC---EEE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred             CchHHHHHHHHHhcCCCc---CCC-CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhce----------------
Confidence            369999999999987753   565 479999999999999999999999999999999999999                


Q ss_pred             ccccccCCCCCeEEeeeccccceecC-CCcEEeccCCCCcccccCcccc
Q psy4279          81 KVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        81 ~~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                 +|+|.|+++||||+. +|.||+++|.++|+|++|+.+|
T Consensus        61 -----------~v~F~t~i~HPnI~~~~G~vcl~il~~~W~p~~~i~~i   98 (158)
T d1yf9a1          61 -----------SIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENI   98 (158)
T ss_dssp             -----------EEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHH
T ss_pred             -----------eEEecCCCCCCCCccCcccccccccccccCchHhhhhH
Confidence                       999999999999986 7999999999999999998765

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-32  Score=199.42  Aligned_cols=101  Identities=27%  Similarity=0.614  Sum_probs=91.1

Q ss_pred             ChHHHHHHHHHhhcCCC--C-CeEEEEcCCCceeEEEEEeC-CCCCCCCCcE-----------EEEEEEcCCCCCCCCCC
Q psy4279           1 MKKNKQKELQDLGRDPP--A-QCSAGPVGDDLFHWQATIMG-PPDSPYQGGV-----------FFLTIHFPTDYPFKPPK   65 (129)
Q Consensus         1 ~~rRL~kEl~~l~~~~~--~-~~~~~p~~~nl~~w~~~i~g-p~~tpY~gg~-----------y~~~i~fp~~YP~~pP~   65 (129)
                      +.|||+|||++|++++.  . .+.+.+.+||+++|++.|.| +++|||+||.           |+++|.||++||++|| 
T Consensus         5 a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~PP-   83 (162)
T d1zuoa1           5 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPP-   83 (162)
T ss_dssp             HHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCC-
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhhcc-
Confidence            46999999999998764  2 35688889999999999999 7899999986           9999999999999999 


Q ss_pred             CCCcccccCCCCcccccccccCCCCCeEEeeeccccce-ecCCCcEEeccCC-CCcccccCcccc
Q psy4279          66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPN-INSNGSICLDILR-SQWSPALTISKA  128 (129)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~i~HPn-i~~~G~iCl~~L~-~~Wsp~~ti~~v  128 (129)
                                                +|+|.|+++||| ++.+|.||+++|. ++|+|++||++|
T Consensus        84 --------------------------~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~I  122 (162)
T d1zuoa1          84 --------------------------FVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESV  122 (162)
T ss_dssp             --------------------------EEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHH
T ss_pred             --------------------------eEEEEEEeeccccccCCceeecccccCCCCCCcccHHHH
Confidence                                      999999999998 5789999999996 469999999876

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.9e-20  Score=131.26  Aligned_cols=99  Identities=16%  Similarity=0.225  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhhcCCC---CCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279           3 KNKQKELQDLGRDPP---AQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFL--TIHFPTDYPFKPPKPPKVSIEYPLKQ   77 (129)
Q Consensus         3 rRL~kEl~~l~~~~~---~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~--~i~fp~~YP~~pP~~~~~~~~~~~~~   77 (129)
                      .+..+|+.++.+.-+   ++..+...+|+..+|.+.|.|+.+++|+||.|.+  .|.||++||++||             
T Consensus        17 ~~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP-------------   83 (141)
T d1s1qa_          17 DLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPP-------------   83 (141)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCC-------------
T ss_pred             hhHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCC-------------
Confidence            466778888877533   5666778889999999999999999999999999  5558999999999             


Q ss_pred             cccccccccCCCCCeEEeeec-----cccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          78 PKVKVSRKYPLKLPKVAFTTR-----IYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        78 ~~~~~~~~~~~~~p~v~f~t~-----i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                    .+.|.+.     ..||||+++|+||+++|++-|.+.+++.++
T Consensus        84 --------------~v~~~pt~~~~~~~h~~V~~~G~V~lp~L~~W~~~~s~L~~l  125 (141)
T d1s1qa_          84 --------------ICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGL  125 (141)
T ss_dssp             --------------EEEECCCTTCEECCSSSBCTTCBBCCHHHHTCCTTTCCHHHH
T ss_pred             --------------EEEEecCCCccccCCCeECCCCCCcchhhcCCCcccccHHHH
Confidence                          8877742     579999999999999996545566777654

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=2.2e-16  Score=114.12  Aligned_cols=100  Identities=20%  Similarity=0.233  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHhhcCCC---CCeEEEEcCCCceeEEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCCCCCCcccccCC
Q psy4279           2 KKNKQKELQDLGRDPP---AQCSAGPVGDDLFHWQATIMGPPDSPYQGGV---FFLTIHFPTDYPFKPPKPPKVSIEYPL   75 (129)
Q Consensus         2 ~rRL~kEl~~l~~~~~---~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~---y~~~i~fp~~YP~~pP~~~~~~~~~~~   75 (129)
                      .+|+.+|+.++.++-+   +...+...+|....+-+.+.|.-..+|+|+.   +.+.|-||++||+.||           
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP-----------   89 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPP-----------   89 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCC-----------
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCC-----------
Confidence            3678889988887543   2344445567778888899999999999996   5677778999999999           


Q ss_pred             CCcccccccccCCCCCeEEeeec-----------cccceecCCCcEEeccCCCCcccccCcccc
Q psy4279          76 KQPKVKVSRKYPLKLPKVAFTTR-----------IYHPNINSNGSICLDILRSQWSPALTISKA  128 (129)
Q Consensus        76 ~~~~~~~~~~~~~~~p~v~f~t~-----------i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v  128 (129)
                                      .+.|.+.           ++||||+++|+||++.|++-|.|+.+|.+|
T Consensus        90 ----------------~v~~~~~~~~~~~~~~~i~~hp~Vd~~G~V~lp~L~~W~~~~s~L~~l  137 (152)
T d1uzxa_          90 ----------------FISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMV  137 (152)
T ss_dssp             ----------------EEEECCTTCCSCC----CGGGGGBCTTSCBCCHHHHSCCTTTCCHHHH
T ss_pred             ----------------EEEEecCcccccCCCcccccCCCCCCCCcEehHHhcCCCCccCcHHHH
Confidence                            8888754           579999999999999998777899888764

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0048  Score=43.03  Aligned_cols=58  Identities=16%  Similarity=0.145  Sum_probs=34.9

Q ss_pred             hHHHHHHHHHhhc-------CCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEE--EEEEEcCCCCCCCCC
Q psy4279           2 KKNKQKELQDLGR-------DPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVF--FLTIHFPTDYPFKPP   64 (129)
Q Consensus         2 ~rRL~kEl~~l~~-------~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y--~~~i~fp~~YP~~pP   64 (129)
                      ..||..||+.|-+       +..+-+.++++ .+=..|.+.---    .+.--.|  .+++++|..||..||
T Consensus        27 ~~RLKEEy~aLI~Yv~nNK~~dndWF~lesn-~~GT~W~GkCWy----ihnl~kYeFd~eFdIP~tYP~t~p   93 (162)
T d2in1a1          27 VQRLKEEYQSLIRYVENNKNADNDWFRLESN-KEGTRWFGKCWY----IHDLLKYEFDIEFDIPITYPTTAP   93 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCEEEEEC-TTSSEEEEEEEE----EETTEEEEEEEEEECCTTTTTSCC
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCeEEeccC-CCCCeeeceeeE----EEeeeEEEEEEEeccCCCCCCCCc
Confidence            3699999998865       23344566643 344556442210    1222344  455566999999999

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.02  Score=36.93  Aligned_cols=60  Identities=20%  Similarity=0.225  Sum_probs=40.3

Q ss_pred             HHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCC----CCCCCcEEEEEEEcCCCCCCCCC
Q psy4279           5 KQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPD----SPYQGGVFFLTIHFPTDYPFKPP   64 (129)
Q Consensus         5 L~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~----tpY~gg~y~~~i~fp~~YP~~pP   64 (129)
                      +..|+..|.+--++.+.+....++...+.+.|.-..+    ..=......+.+.+|++||..+|
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P   69 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVP   69 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCC
T ss_pred             HHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCC
Confidence            6789999988666677666445555555555432111    11123468889999999999999

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.56  E-value=2.1  Score=27.54  Aligned_cols=62  Identities=15%  Similarity=0.020  Sum_probs=36.8

Q ss_pred             HHHHHHHHHhhcCCCCCeEEEEcCC---Cc--eeEEEEEeCCC-CCCCCCcEEEEEEEcCCCCCCCCC
Q psy4279           3 KNKQKELQDLGRDPPAQCSAGPVGD---DL--FHWQATIMGPP-DSPYQGGVFFLTIHFPTDYPFKPP   64 (129)
Q Consensus         3 rRL~kEl~~l~~~~~~~~~~~p~~~---nl--~~w~~~i~gp~-~tpY~gg~y~~~i~fp~~YP~~pP   64 (129)
                      .+-+.|+..|..--+..+.......   .-  ....+.|.... +.....-.+.|.|.||++||..+|
T Consensus        13 E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P   80 (137)
T d1ukxa_          13 QRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVP   80 (137)
T ss_dssp             HHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCC
T ss_pred             HHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccc
Confidence            4556788888775444554431111   11  13344444222 223444679999999999999999