Psyllid ID: psy4401

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQHRKQAHRPKPAPSENLNTAYTNNNSIAPGENLNKLEDKLDDTLMESEISMTDDIDEDLILSNILLSGDSYWIHEPEHISPDLLDSLLDYF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEHcccccHHHEEEccccccccccccEEEEcccHHHHHccccEEEccccccccccHHccccccccccccccccccccccccccccccHHHHcccHHHHHHHcccccccccccHHEEEcccccEEEEccccccHHHHHHHHHHc
Coil and Loop (DISEMBL)
mrvnsirhnlslnkcfvkvprskdqpgkggfwkLDLQKLeegggryrnvrrkssdiqhrkqahrpkpapsenlntaytnnnsiapgenlnKLEDKLDDTLMESEIsmtddidedLILSNILlsgdsywihepehispdLLDSLLDYF
Flexible Loop (DISEMBL)
mrvnsirhnlslnkcfvkvprskdqpgkggfwkldlqkleegggryrnvrrkssdiqhrkqahrpkpapsenlnTAYTNnnsiapgenLNKLEDKLDDTLMESEISMTDDIDEDLILSNILLSGDSYWIHEPEHISPDLLDSLLDYF
Low Complexity Region (SEG)
MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQHRKQAHRPKPAPSENLNTAYTNNNSIAPGENLNKLEDKLDDTLMESEISMTDDIDEDLILSNILLSGDSYWIHEPEHISPDLLDSLLDYF
Disordered region (IsUnstruct)
**********SLNKCFVKV**********GFWKLDL*************************************************************************DIDEDLILSNILLSGDSYWIHEPEHISPDLL*******
Disordered Region (DISOPRED)
MRVNSIRHNLSLNKCFVKVPR****PGKGGFWKLDLQKLEEGG*************************************************************************************************DSLLDYF
Disordered Region (DISEMBL)
MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNV*******************PSENLNTAYTNNNSIAPGENLNKLEDKLDDTLMESEISMTDDIDEDLILSNILLSGDSYWIHEPEHISPDLLDSLLDYF
Disordered Region (DISPRO)
*RVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVR***********************************************DTLMESEISMTDDIDEDLILSNILLSGDSYWIHEPEHISPDLLDSLLDYF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQHRKQAHRPKPAPSENLNTAYTNNNSIAPGENLNKLEDKLDDTLMESEISMTDDIDEDLILSNILLSGDSYWIHEPEHISPDLLDSLLDYF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q63247	421	Forkhead box protein J1 O	yes	N/A	0.448	0.156	0.528	8e-13
Q92949	421	Forkhead box protein J1 O	yes	N/A	0.544	0.190	0.452	2e-12
Q61660	421	Forkhead box protein J1 O	yes	N/A	0.448	0.156	0.514	2e-12
Q708W1	439	Forkhead box protein J1-B	N/A	N/A	0.312	0.104	0.653	4e-12
Q5M7N6	438	Forkhead box protein J1 O	yes	N/A	0.231	0.077	0.852	5e-12
Q708W2	439	Forkhead box protein J1-A	N/A	N/A	0.231	0.077	0.852	7e-12
Q66IG8	371	Forkhead box protein J1.2	no	N/A	0.217	0.086	0.843	2e-11
Q32NH9	370	Forkhead box protein J1.2	N/A	N/A	0.217	0.086	0.843	3e-11
Q8BUR3	623	Forkhead box protein J3 O	no	N/A	0.346	0.081	0.571	4e-11
Q9UPW0	622	Forkhead box protein J3 O	no	N/A	0.346	0.081	0.571	4e-11

>sp|Q63247|FOXJ1_RAT Forkhead box protein J1 OS=Rattus norvegicus GN=Foxj1 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEE-GGGRYRNVRRKSSDIQ---HR 59
           NSIRHNLSLNKCF+KVPR KD+PGKGGFW++D Q  E    G ++  R     I     R
Sbjct: 167 NSIRHNLSLNKCFIKVPREKDEPGKGGFWRIDPQYAERLLSGAFKKRRLPPVHIHPAFAR 226

Query: 60  KQAHRPKPAP 69
           + A  P  AP
Sbjct: 227 QAAQEPSTAP 236

May play an important role in cell fate determination during lung development and in spermatogenesis.
Rattus norvegicus (taxid: 10116)

>sp|Q92949|FOXJ1_HUMAN Forkhead box protein J1 OS=Homo sapiens GN=FOXJ1 PE=2 SV=3

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEE-GGGRYRNVRRKSSDIQ---HR 59
           NSIRHNLSLNKCF+KVPR KD+PGKGGFW++D Q  E    G ++  R     I     R
Sbjct: 167 NSIRHNLSLNKCFIKVPREKDEPGKGGFWRIDPQYAERLLSGAFKKRRLPPVHIHPAFAR 226

Query: 60  KQAHRPKPAPSENLNTAYTNNNSI 83
           + A  P   P     T  T    +
Sbjct: 227 QAAQEPSAVPRAGPLTVNTEAQQL 250

May play an important role in cell fate determination during lung development and in spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|Q61660|FOXJ1_MOUSE Forkhead box protein J1 OS=Mus musculus GN=Foxj1 PE=2 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEE-GGGRYRNVRRKSSDIQ---HR 59
           NSIRHNLSLNKCF+KVPR KD+PGKGGFW++D Q  E    G ++  R     I     R
Sbjct: 167 NSIRHNLSLNKCFIKVPREKDEPGKGGFWRIDPQYAERLLSGAFKKRRLPPVHIHPAFAR 226

Query: 60  KQAHRPKPAP 69
           + +  P  AP
Sbjct: 227 QASQEPSAAP 236

May play an important role in cell fate determination during lung development and in spermatogenesis.

Mus musculus (taxid: 10090)

>sp|Q708W1|FXJ1B_XENLA Forkhead box protein J1-B OS=Xenopus laevis GN=foxj1-b PE=2 SV=1

 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 38/49 (77%), Gaps = 3/49 (6%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNV 49
           NSIRHNLSLNKCF+KVPR KD+PGKGGFWK+D Q   +L  G  + R +
Sbjct: 170 NSIRHNLSLNKCFIKVPREKDEPGKGGFWKIDPQYADRLMNGAMKKRRL 218

Probable transcription factor.

Xenopus laevis (taxid: 8355)

>sp|Q5M7N6|FOXJ1_XENTR Forkhead box protein J1 OS=Xenopus tropicalis GN=foxj1 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 32/34 (94%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ 37
           NSIRHNLSLNKCF+KVPR KD+PGKGGFWK+D Q
Sbjct: 169 NSIRHNLSLNKCFIKVPREKDEPGKGGFWKIDPQ 202

Probable transcription factor.

Xenopus tropicalis (taxid: 8364)

>sp|Q708W2|FXJ1A_XENLA Forkhead box protein J1-A OS=Xenopus laevis GN=foxj1-a PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 32/34 (94%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ 37
           NSIRHNLSLNKCF+KVPR KD+PGKGGFWK+D Q
Sbjct: 170 NSIRHNLSLNKCFMKVPREKDEPGKGGFWKIDPQ 203

Probable transcription factor.

Xenopus laevis (taxid: 8355)

>sp|Q66IG8|FXJ12_XENTR Forkhead box protein J1.2 OS=Xenopus tropicalis GN=foxj1.2 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
           NSIRHNLSLNKCF+KVPR KD+PGKGGFW++D
Sbjct: 155 NSIRHNLSLNKCFMKVPRGKDEPGKGGFWQMD 186

Probable transcription factor.

Xenopus tropicalis (taxid: 8364)

>sp|Q32NH9|FXJ12_XENLA Forkhead box protein J1.2 OS=Xenopus laevis GN=foxj1.2 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 31/32 (96%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
           NSIRHNLSLNKCF+KVPR KD+PGKGGFW++D
Sbjct: 154 NSIRHNLSLNKCFMKVPRGKDEPGKGGFWQMD 185

Probable transcription factor.

Xenopus laevis (taxid: 8355)

>sp|Q8BUR3|FOXJ3_MOUSE Forkhead box protein J3 OS=Mus musculus GN=Foxj3 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 5/56 (8%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEG-----GGRYRNVRRKSS 54
           NSIRHNLSLNKCF+KVPRSKD PGKG +W +D    E+        R R+V R S+
Sbjct: 124 NSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDTLPTRPKKRARSVERAST 179

Mus musculus (taxid: 10090)

>sp|Q9UPW0|FOXJ3_HUMAN Forkhead box protein J3 OS=Homo sapiens GN=FOXJ3 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 5/56 (8%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEE-----GGGRYRNVRRKSS 54
           NSIRHNLSLNKCF+KVPRSKD PGKG +W +D    E+        R R+V R S+
Sbjct: 124 NSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVERAST 179

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
322794486	310	hypothetical protein SINV_01156 [Solenop	0.408	0.193	0.625	2e-15
332030764	309	Forkhead box protein J1-B [Acromyrmex ec	0.414	0.197	0.6	3e-15
383862109	282	PREDICTED: forkhead box protein J1-B-lik	0.510	0.265	0.531	8e-15
328783542	283	PREDICTED: forkhead box protein J1-like	0.346	0.180	0.690	3e-14
350423790	282	PREDICTED: forkhead box protein J1-B-lik	0.462	0.241	0.545	3e-14
340722095	282	PREDICTED: forkhead box protein J1-B-lik	0.489	0.255	0.526	4e-14
345493297	338	PREDICTED: forkhead box protein J1-B-lik	0.265	0.115	0.897	4e-14
307201887	301	Forkhead box protein J1-B [Harpegnathos	0.414	0.202	0.575	4e-14
307184440	308	Forkhead box protein J1 [Camponotus flor	0.346	0.165	0.633	5e-14
380016380	278	PREDICTED: forkhead box protein J1-B-lik	0.346	0.183	0.672	6e-14

>gi|322794486|gb|EFZ17539.1| hypothetical protein SINV_01156 [Solenopsis invicta]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 49/64 (76%), Gaps = 4/64 (6%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQHRKQAH 63
           NSIRHNLSLNKCFVK+PRSKD+PGKGGFWKLDL+++EEG    +  RR+S+  Q  +   
Sbjct: 151 NSIRHNLSLNKCFVKLPRSKDEPGKGGFWKLDLERMEEG----KRSRRRSAFSQRTRGTK 206

Query: 64  RPKP 67
           R  P
Sbjct: 207 RQSP 210

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030764|gb|EGI70440.1| Forkhead box protein J1-B [Acromyrmex echinatior]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 50/65 (76%), Gaps = 4/65 (6%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQHRKQAH 63
           NSIRHNLSLNKCF+K+PRSKD+PGKGGFWKLDL+++EEG    +  RR+S+  Q  +   
Sbjct: 152 NSIRHNLSLNKCFLKLPRSKDEPGKGGFWKLDLERMEEG----KRSRRRSAISQRTRSTK 207

Query: 64  RPKPA 68
           R  P+
Sbjct: 208 RQSPS 212

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862109|ref|XP_003706526.1| PREDICTED: forkhead box protein J1-B-like [Megachile rotundata]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 54/79 (68%), Gaps = 4/79 (5%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQHRKQAH 63
           NSIRHNLSLNKCFVK+PRSKD+PGKGGFWKLDL+++EEG    R  +R+++  Q  +   
Sbjct: 143 NSIRHNLSLNKCFVKLPRSKDEPGKGGFWKLDLERMEEG----RKSKRRATMSQRVRGTK 198

Query: 64  RPKPAPSENLNTAYTNNNS 82
               A +   N+A  N  S
Sbjct: 199 NLTLAKTTVTNSAQNNGAS 217

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783542|ref|XP_003250310.1| PREDICTED: forkhead box protein J1-like [Apis mellifera]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 46/55 (83%), Gaps = 4/55 (7%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQH 58
           NSIRHNLSLNKCFVK+PRSKD+PGKGGFWKLDL+++EEG    R  +R++S  Q 
Sbjct: 143 NSIRHNLSLNKCFVKLPRSKDEPGKGGFWKLDLERMEEG----RKSKRRASMSQR 193

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423790|ref|XP_003493592.1| PREDICTED: forkhead box protein J1-B-like [Bombus impatiens]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 54/77 (70%), Gaps = 9/77 (11%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQHRKQAH 63
           NSIRHNLSLNKCFVK+PRSKD+PGKGGFWKLDL+++EEG    R  +R+++  Q  + + 
Sbjct: 143 NSIRHNLSLNKCFVKLPRSKDEPGKGGFWKLDLERMEEG----RKSKRRATMSQRIRGSK 198

Query: 64  RPKPAPSENLNTAYTNN 80
           +   A      T  TNN
Sbjct: 199 KLTAA-----KTMVTNN 210

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722095|ref|XP_003399445.1| PREDICTED: forkhead box protein J1-B-like [Bombus terrestris]

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 4/76 (5%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQHRKQAH 63
           NSIRHNLSLNKCFVK+PRSKD+PGKGGFWKLDL+++EEG    R  +R+++  Q  + + 
Sbjct: 143 NSIRHNLSLNKCFVKLPRSKDEPGKGGFWKLDLERMEEG----RKSKRRATMSQRIRGSK 198

Query: 64  RPKPAPSENLNTAYTN 79
           +   A +   N   +N
Sbjct: 199 KLTAAKTMVTNNIQSN 214

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493297|ref|XP_003427039.1| PREDICTED: forkhead box protein J1-B-like [Nasonia vitripennis]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 39/39 (100%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEG 42
           NSIRHNLSLNKCFVK+PRSKD+PGKGGFWKLDL++LEEG
Sbjct: 173 NSIRHNLSLNKCFVKLPRSKDEPGKGGFWKLDLERLEEG 211

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201887|gb|EFN81516.1| Forkhead box protein J1-B [Harpegnathos saltator]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 5/66 (7%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQHRKQAH 63
           NSIRHNLSLNKCF+K+PRSKD+PGKGGFWKLD++++EEG    +  RR+S+ I  R +  
Sbjct: 143 NSIRHNLSLNKCFIKLPRSKDEPGKGGFWKLDIERMEEG----KRSRRRSA-ISQRIRGS 197

Query: 64  RPKPAP 69
           + +  P
Sbjct: 198 KNRQCP 203

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184440|gb|EFN70849.1| Forkhead box protein J1 [Camponotus floridanus]

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 46/60 (76%), Gaps = 9/60 (15%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEG---------GGRYRNVRRKSS 54
           NSIRHNLSLNKCFVK+PRSKD+PGKGGFWKLDL+++EE            R RN +++SS
Sbjct: 150 NSIRHNLSLNKCFVKLPRSKDEPGKGGFWKLDLERMEESKRSRRRSAISQRIRNSKKQSS 209

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016380|ref|XP_003692163.1| PREDICTED: forkhead box protein J1-B-like [Apis florea]

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 46/55 (83%), Gaps = 4/55 (7%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQH 58
           NSIRHNLSLNKCFVK+PRSKD+PGKGGFWKLDL+++EEG    R  +R+++  Q 
Sbjct: 140 NSIRHNLSLNKCFVKLPRSKDEPGKGGFWKLDLERMEEG----RKSKRRATMSQR 190

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
MGI|MGI:1347469	336	Foxl1 "forkhead box L1" [Mus m	0.469	0.205	0.5	3.3e-14
ZFIN|ZDB-GENE-060929-1178	458	foxj1a "forkhead box J1a" [Dan	0.680	0.218	0.405	6.6e-13
UNIPROTKB|Q95QA9	168	fkh-2 "Protein FKH-2, isoform	0.476	0.416	0.506	7.1e-13
ZFIN|ZDB-GENE-040426-1181	363	foxl1 "forkhead box L1" [Danio	0.680	0.275	0.386	7.9e-13
WB|WBGene00001434	270	fkh-2 [Caenorhabditis elegans	0.476	0.259	0.506	8.3e-13
UNIPROTKB|Q22510	270	fkh-2 "Protein FKH-2, isoform	0.476	0.259	0.506	8.3e-13
RGD|621764	421	Foxj1 "forkhead box J1" [Rattu	0.448	0.156	0.528	9e-13
UNIPROTKB|Q99958	501	FOXC2 "Forkhead box protein C2	0.605	0.177	0.436	1.7e-12
UNIPROTKB|Q12951	378	FOXI1 "Forkhead box protein I1	0.353	0.137	0.545	1.7e-12
UNIPROTKB|Q7ZYQ0	373	foxi1e "Forkhead box protein I	0.503	0.198	0.474	1.8e-12

MGI|MGI:1347469 Foxl1 "forkhead box L1" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
 Identities = 35/70 (50%), Positives = 44/70 (62%)

Query:     4 NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEE-GGGRYRNVRRKSSDIQHRKQA 62
             NSIRHNLSLN+CFVKVPR K +PGKG +W LD + L+    G YR  +RK        +A
Sbjct:    95 NSIRHNLSLNECFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPAAGSPEA 154

Query:    63 HRPKPAPSEN 72
              R +  P E+
Sbjct:   155 KRTRVEPPES 164

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0003677 "DNA binding" evidence=ISO

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;TAS

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0005634 "nucleus" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007389 "pattern specification process" evidence=IBA

GO:0007420 "brain development" evidence=IBA

GO:0007495 "visceral mesoderm-endoderm interaction involved in midgut development" evidence=IMP

GO:0007507 "heart development" evidence=ISO

GO:0008134 "transcription factor binding" evidence=IBA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0009790 "embryo development" evidence=IBA

GO:0009887 "organ morphogenesis" evidence=IBA

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=IMP

GO:0030166 "proteoglycan biosynthetic process" evidence=IMP

GO:0035136 "forelimb morphogenesis" evidence=IBA

GO:0043010 "camera-type eye development" evidence=IBA

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0051216 "cartilage development" evidence=IBA

GO:0061146 "Peyer's patch morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-060929-1178 foxj1a "forkhead box J1a" [Danio rerio (taxid:7955)]

 Score = 178 (67.7 bits), Expect = 6.6e-13, P = 6.6e-13
 Identities = 43/106 (40%), Positives = 56/106 (52%)

Query:     4 NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEG-GGRYRNVRRKSSDI----QH 58
             +SIRHNLSLNKCF+KVPR KD+PGKGGFWK+D Q  E    G Y+  R     I    QH
Sbjct:   188 SSIRHNLSLNKCFIKVPRQKDEPGKGGFWKIDPQYAERLLNGAYKKRRLPPVQINPALQH 247

Query:    59 RKQAHRPKPAP-SENLNTAYTNNNSIAPGENLNKLEDKLDDTLMES 103
             R + +       S NL+ +  +   +   E     +   D  L E+
Sbjct:   248 RLRMNAQATGIISRNLSVSPESQQLLKDFEEATNADQNWDPRLAEA 293

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0045409 "negative regulation of interleukin-6 biosynthetic process" evidence=IBA

GO:0002635 "negative regulation of germinal center formation" evidence=IBA

GO:0019904 "protein domain specific binding" evidence=IBA

GO:0008134 "transcription factor binding" evidence=IBA

GO:0035089 "establishment of apical/basal cell polarity" evidence=IBA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0030324 "lung development" evidence=IBA

GO:0002897 "positive regulation of central B cell tolerance induction" evidence=IBA

GO:0050900 "leukocyte migration" evidence=IBA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IBA

GO:0050869 "negative regulation of B cell activation" evidence=IBA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0060972 "left/right pattern formation" evidence=IBA

GO:0033085 "negative regulation of T cell differentiation in thymus" evidence=IBA

GO:0030036 "actin cytoskeleton organization" evidence=IBA

GO:0030855 "epithelial cell differentiation" evidence=IBA

GO:0042130 "negative regulation of T cell proliferation" evidence=IBA

GO:0032862 "activation of Rho GTPase activity" evidence=IBA

GO:0002924 "negative regulation of humoral immune response mediated by circulating immunoglobulin" evidence=IBA

GO:0009611 "response to wounding" evidence=IMP

GO:0060296 "regulation of cilium beat frequency involved in ciliary motility" evidence=IMP

GO:0003351 "epithelial cilium movement" evidence=IMP

GO:0042384 "cilium assembly" evidence=IDA;IMP

GO:0060271 "cilium morphogenesis" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0003146 "heart jogging" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

UNIPROTKB|Q95QA9 fkh-2 "Protein FKH-2, isoform b" [Caenorhabditis elegans (taxid:6239)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 37/73 (50%), Positives = 46/73 (63%)

Query:     4 NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEG--GGRYRNVRRKSSDIQH-RK 60
             NSIRHNLSLNKCFVKVPR+ D PGKG +W LD    +E   GG    +RR+ S +   R 
Sbjct:    37 NSIRHNLSLNKCFVKVPRNFDDPGKGNYWMLDATAEDEVFIGGATGKLRRRPSSLSRARM 96

Query:    61 QAHRPKPAPSENL 73
              A++   A + NL
Sbjct:    97 DAYKQYGAAAANL 109

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0045787 "positive regulation of cell cycle" evidence=IBA

GO:0045665 "negative regulation of neuron differentiation" evidence=IBA

GO:0016199 "axon midline choice point recognition" evidence=IBA

GO:0009953 "dorsal/ventral pattern formation" evidence=IBA

GO:0009888 "tissue development" evidence=IBA

GO:0009880 "embryonic pattern specification" evidence=IBA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0008134 "transcription factor binding" evidence=IBA

GO:0007346 "regulation of mitotic cell cycle" evidence=IBA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IBA

ZFIN|ZDB-GENE-040426-1181 foxl1 "forkhead box L1" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 7.9e-13, P = 7.9e-13
 Identities = 41/106 (38%), Positives = 61/106 (57%)

Query:     4 NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEE-GGGRYRNVRRK--SSDIQHRK 60
             NSIRHNLSLN CF+KVPR K +PGKG +W LD + L+    G YR  +RK  + D    K
Sbjct:    98 NSIRHNLSLNDCFIKVPREKGRPGKGSYWTLDTKCLDMFENGNYRRRKRKCRTQDTGDTK 157

Query:    61 QAHRPKPAPSENLNTAYTNNNSIAP-GENLNK-LEDKLDDTLMESE 104
               H+     S  L+     +  ++P  +N  + +++K +DT  ++E
Sbjct:   158 VGHKRTRVTSFKLHQG-AQSEKVSPLKQNPGRDIKEKSNDTQPQNE 202

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IDA

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0008134 "transcription factor binding" evidence=IBA

GO:0009887 "organ morphogenesis" evidence=IBA

GO:0030166 "proteoglycan biosynthetic process" evidence=IBA

GO:0007389 "pattern specification process" evidence=IBA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=IBA

GO:0007495 "visceral mesoderm-endoderm interaction involved in midgut development" evidence=IBA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0009790 "embryo development" evidence=IBA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0007420 "brain development" evidence=IMP

GO:0043010 "camera-type eye development" evidence=IMP

GO:0051216 "cartilage development" evidence=IMP

GO:0035138 "pectoral fin morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IEA;IC

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

WB|WBGene00001434 fkh-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 170 (64.9 bits), Expect = 8.3e-13, P = 8.3e-13
 Identities = 37/73 (50%), Positives = 46/73 (63%)

Query:     4 NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEG--GGRYRNVRRKSSDIQH-RK 60
             NSIRHNLSLNKCFVKVPR+ D PGKG +W LD    +E   GG    +RR+ S +   R 
Sbjct:   139 NSIRHNLSLNKCFVKVPRNFDDPGKGNYWMLDATAEDEVFIGGATGKLRRRPSSLSRARM 198

Query:    61 QAHRPKPAPSENL 73
              A++   A + NL
Sbjct:   199 DAYKQYGAAAANL 211

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI;IMP

GO:0002119 "nematode larval development" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0035058 "nonmotile primary cilium assembly" evidence=IMP

GO:0016358 "dendrite development" evidence=IMP

GO:0048665 "neuron fate specification" evidence=IMP

UNIPROTKB|Q22510 fkh-2 "Protein FKH-2, isoform a" [Caenorhabditis elegans (taxid:6239)]

 Score = 170 (64.9 bits), Expect = 8.3e-13, P = 8.3e-13
 Identities = 37/73 (50%), Positives = 46/73 (63%)

Query:     4 NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEG--GGRYRNVRRKSSDIQH-RK 60
             NSIRHNLSLNKCFVKVPR+ D PGKG +W LD    +E   GG    +RR+ S +   R 
Sbjct:   139 NSIRHNLSLNKCFVKVPRNFDDPGKGNYWMLDATAEDEVFIGGATGKLRRRPSSLSRARM 198

Query:    61 QAHRPKPAPSENL 73
              A++   A + NL
Sbjct:   199 DAYKQYGAAAANL 211

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0045787 "positive regulation of cell cycle" evidence=IBA

GO:0045665 "negative regulation of neuron differentiation" evidence=IBA

GO:0016199 "axon midline choice point recognition" evidence=IBA

GO:0009953 "dorsal/ventral pattern formation" evidence=IBA

GO:0009888 "tissue development" evidence=IBA

GO:0009880 "embryonic pattern specification" evidence=IBA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0008134 "transcription factor binding" evidence=IBA

GO:0007346 "regulation of mitotic cell cycle" evidence=IBA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IBA

RGD|621764 Foxj1 "forkhead box J1" [Rattus norvegicus (taxid:10116)]

 Score = 176 (67.0 bits), Expect = 9.0e-13, P = 9.0e-13
 Identities = 37/70 (52%), Positives = 44/70 (62%)

Query:     4 NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEG-GGRYRNVRRKSSDIQH---R 59
             NSIRHNLSLNKCF+KVPR KD+PGKGGFW++D Q  E    G ++  R     I     R
Sbjct:   167 NSIRHNLSLNKCFIKVPREKDEPGKGGFWRIDPQYAERLLSGAFKKRRLPPVHIHPAFAR 226

Query:    60 KQAHRPKPAP 69
             + A  P  AP
Sbjct:   227 QAAQEPSTAP 236

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=ISO

GO:0001947 "heart looping" evidence=IBA

GO:0002508 "central tolerance induction" evidence=ISO

GO:0002635 "negative regulation of germinal center formation" evidence=ISO;IBA

GO:0002897 "positive regulation of central B cell tolerance induction" evidence=ISO;IBA

GO:0002924 "negative regulation of humoral immune response mediated by circulating immunoglobulin" evidence=ISO;IBA

GO:0003674 "molecular_function" evidence=ND

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IBA

GO:0006959 "humoral immune response" evidence=ISO

GO:0007283 "spermatogenesis" evidence=IEP

GO:0008134 "transcription factor binding" evidence=IBA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0019904 "protein domain specific binding" evidence=IBA

GO:0030036 "actin cytoskeleton organization" evidence=ISO;IBA

GO:0030324 "lung development" evidence=IBA

GO:0030855 "epithelial cell differentiation" evidence=IBA

GO:0030856 "regulation of epithelial cell differentiation" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO;IBA

GO:0032355 "response to estradiol stimulus" evidence=IEP

GO:0032862 "activation of Rho GTPase activity" evidence=ISO;IBA

GO:0033085 "negative regulation of T cell differentiation in thymus" evidence=ISO;IBA

GO:0035089 "establishment of apical/basal cell polarity" evidence=ISO;IBA

GO:0035502 "metanephric part of ureteric bud development" evidence=ISO

GO:0042130 "negative regulation of T cell proliferation" evidence=ISO;IBA

GO:0042384 "cilium assembly" evidence=ISO;IBA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045409 "negative regulation of interleukin-6 biosynthetic process" evidence=ISO;IBA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0050869 "negative regulation of B cell activation" evidence=ISO;IBA

GO:0050900 "leukocyte migration" evidence=ISO;IBA

GO:0060271 "cilium morphogenesis" evidence=ISO

GO:0060428 "lung epithelium development" evidence=ISO

GO:0060972 "left/right pattern formation" evidence=ISO;IBA

GO:0071363 "cellular response to growth factor stimulus" evidence=IEP

GO:0072016 "glomerular parietal epithelial cell development" evidence=ISO

GO:1901248 "positive regulation of lung ciliated cell differentiation" evidence=ISO

UNIPROTKB|Q99958 FOXC2 "Forkhead box protein C2" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 41/94 (43%), Positives = 52/94 (55%)

Query:     4 NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLE--EGGGRYRNVRR-KSSDIQHRK 60
             NSIRHNLSLN+CFVKVPR   +PGKG +W LD       E G   R  RR K  D+   K
Sbjct:   118 NSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVSKEK 177

Query:    61 Q--AHRPKPAPSENLNTAYTNNNSIAPGENLNKL 92
             +  AH  +P P+ +     T + + AP E   K+
Sbjct:   178 EERAHLKEPPPAASKGAPATPHLADAPKEAEKKV 211

GO:0014032 "neural crest cell development" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0072011 "glomerular endothelium development" evidence=IEA

GO:0072112 "glomerular visceral epithelial cell differentiation" evidence=IEA

GO:0072144 "glomerular mesangial cell development" evidence=IEA

GO:0007507 "heart development" evidence=IMP

GO:0007498 "mesoderm development" evidence=NAS

GO:0001503 "ossification" evidence=IBA

GO:0001569 "patterning of blood vessels" evidence=IBA

GO:0001570 "vasculogenesis" evidence=IBA

GO:0001656 "metanephros development" evidence=IBA

GO:0001657 "ureteric bud development" evidence=IBA

GO:0001756 "somitogenesis" evidence=IBA

GO:0001974 "blood vessel remodeling" evidence=IBA

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0007219 "Notch signaling pathway" evidence=IBA

GO:0008134 "transcription factor binding" evidence=IBA

GO:0008301 "DNA binding, bending" evidence=IBA

GO:0014034 "neural crest cell fate commitment" evidence=IBA

GO:0030199 "collagen fibril organization" evidence=IBA

GO:0035050 "embryonic heart tube development" evidence=IBA

GO:0043010 "camera-type eye development" evidence=IBA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS;IBA

GO:0046620 "regulation of organ growth" evidence=IBA

GO:0048010 "vascular endothelial growth factor receptor signaling pathway" evidence=IBA

GO:0048343 "paraxial mesodermal cell fate commitment" evidence=IBA

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IBA

GO:0048844 "artery morphogenesis" evidence=IBA

GO:0050880 "regulation of blood vessel size" evidence=IBA

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0055010 "ventricular cardiac muscle tissue morphogenesis" evidence=IBA

GO:0060038 "cardiac muscle cell proliferation" evidence=IBA

GO:0001946 "lymphangiogenesis" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0008286 "insulin receptor signaling pathway" evidence=IDA

GO:0031490 "chromatin DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009725 "response to hormone stimulus" evidence=IDA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0033630 "positive regulation of cell adhesion mediated by integrin" evidence=ISS

GO:0035470 "positive regulation of vascular wound healing" evidence=ISS

GO:0090050 "positive regulation of cell migration involved in sprouting angiogenesis" evidence=ISS

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

UNIPROTKB|Q12951 FOXI1 "Forkhead box protein I1" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query:     4 NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD--LQKLEEGGGRYRNVRRKSSDI 56
             NSIRHNLSLN CF KVPR +D PGKG +W LD   +K+ + G  +R  R++ SD+
Sbjct:   169 NSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGN-FRRKRKRKSDV 222

GO:0009790 "embryo development" evidence=NAS

GO:0008301 "DNA binding, bending" evidence=IBA;NAS

GO:0003690 "double-stranded DNA binding" evidence=IBA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0005667 "transcription factor complex" evidence=IBA

GO:0007389 "pattern specification process" evidence=IBA

GO:0008134 "transcription factor binding" evidence=IBA

GO:0009957 "epidermal cell fate specification" evidence=IBA

GO:0043049 "otic placode formation" evidence=IBA

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IBA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005634 "nucleus" evidence=IC

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

UNIPROTKB|Q7ZYQ0 foxi1e "Forkhead box protein I1-ema" [Xenopus laevis (taxid:8355)]

 Score = 172 (65.6 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 37/78 (47%), Positives = 48/78 (61%)

Query:     4 NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD--LQKLEEGGGRYRNVRRKSSDIQHRKQ 61
             NSIRHNLSLN CF KVPR +D PGKG +W LD   +K+ + G  +R  R++ SD+    Q
Sbjct:   169 NSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGN-FRRKRKRKSDVSPNGQ 227

Query:    62 AHRPKPAPSENLNTAYTN 79
                 KP  S  L+ + TN
Sbjct:   228 LSSDKPEGSP-LSESPTN 244

GO:0005634 "nucleus" evidence=ISS

GO:0042664 "negative regulation of endodermal cell fate specification" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0048335 "negative regulation of mesodermal cell fate determination" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63247	FOXJ1_RAT	No assigned EC number	0.5285	0.4489	0.1567	yes	N/A
Q61660	FOXJ1_MOUSE	No assigned EC number	0.5142	0.4489	0.1567	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	147
cd00059	78	cd00059, FH, Forkhead (FH), also known as a "winge	3e-18
pfam00250	96	pfam00250, Fork_head, Fork head domain	2e-17
smart00339	89	smart00339, FH, FORKHEAD	1e-15
COG5025	610	COG5025, COG5025, Transcription factor of the Fork	3e-10
COG5025	610	COG5025, COG5025, Transcription factor of the Fork	7e-04

>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix"

 Score = 73.4 bits (181), Expect = 3e-18
 Identities = 26/32 (81%), Positives = 28/32 (87%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSLNKCFVKVPR  D+PGKG +W LD
Sbjct: 47 NSIRHNLSLNKCFVKVPREPDEPGKGSYWTLD 78

FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix. Length = 78

>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain

 Score = 72.3 bits (178), Expect = 2e-17
 Identities = 26/32 (81%), Positives = 29/32 (90%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSLNKCF+KVPRS D+PGKG +W LD
Sbjct: 47 NSIRHNLSLNKCFIKVPRSPDKPGKGSYWTLD 78

Length = 96

>gnl|CDD|214627 smart00339, FH, FORKHEAD

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 25/32 (78%), Positives = 27/32 (84%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSLN CFVKVPR  D+PGKG +W LD
Sbjct: 47 NSIRHNLSLNDCFVKVPREGDRPGKGSYWTLD 78

FORKHEAD, also known as a "winged helix". Length = 89

>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription]

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD----LQKLEEGGGRYRNVRRKSSDIQHR 59
           NSIRHNLSLNK F KVPRS  QPGKG FWK+D     +K  +   R       +  +  +
Sbjct: 383 NSIRHNLSLNKSFEKVPRSASQPGKGCFWKIDYSYIYEKESKRNPRSPKKSPSAHSVHQK 442

Query: 60  KQAHRPKPAPS 70
              H      S
Sbjct: 443 LSLHVNDLYQS 453

Length = 610

>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription]

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD----LQKLEEGGGRYRNVRRKSSDIQHR 59
           NSIRHNLSLN  F+K+        KG FW +      Q L+ G       ++    +   
Sbjct: 132 NSIRHNLSLNDAFIKIEGRNGAKVKGHFWSIGPGHETQFLKSGLRLDGGGKQMMFTLP-- 189

Query: 60  KQAHRPKPAPSENLNTAYTNNNSIAPGENLNKLEDKLDDTLMESEIS 106
                     S +      +N+S+        L+      L+     
Sbjct: 190 SSTEIKITYSSTHSMPLLESNDSLNSNNERELLDIIKSSALIRIPAD 236

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
KOG3563|consensus	454		99.79
KOG3562|consensus	277		99.77
KOG2294|consensus	454		99.72
PF00250	96	Fork_head: Fork head domain; InterPro: IPR001766 T	99.72
cd00059	78	FH Forkhead (FH), also known as a "winged helix".	99.71
smart00339	89	FH FORKHEAD. FORKHEAD, also known as a "winged hel	99.65
COG5025	610	Transcription factor of the Forkhead/HNF3 family [	98.97
KOG4385|consensus	581		98.93
COG5025	610	Transcription factor of the Forkhead/HNF3 family [	98.37

>KOG3563|consensus

Probab=99.79  E-value=5.5e-20  Score=160.18  Aligned_cols=57  Identities=49%  Similarity=0.759  Sum_probs=53.3

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccCCCcchhh
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVRRKSSDIQ   57 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r~~~~~~~   57 (147)
                      .|||||||.||+|+||+||+|.++.||||+||+|+|+   +|++|++.||+||.|..+..
T Consensus       216 RWQNSIRHSLSFNDCFVKVaRSPDKPGKGSfWTLHpdsGNMFENGCYLRRQKRFK~ekk~  275 (454)
T KOG3563|consen  216 RWQNSIRHSLSFNDCFVKVARSPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKKE  275 (454)
T ss_pred             HHHhhhhhhccccceeeeccCCCCCCCCccceeecCCcCcccccchhehhhhhhhhhhhh
Confidence            3999999999999999999999999999999999999   99999999999998876543

>KOG3562|consensus

Probab=99.77  E-value=6.2e-20  Score=151.76  Aligned_cols=55  Identities=44%  Similarity=0.793  Sum_probs=50.5

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccCCCcch
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVRRKSSD   55 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r~~~~~   55 (147)
                      .||||+|||||+|+||+||||..+++|||+||+|+|.   +|++|.+.|||||.+..+
T Consensus        56 rWQNSLRHNLSFNDCFIKiPRr~drpGKGsyWalHP~a~dMFENGS~LRRrKRFrv~k  113 (277)
T KOG3562|consen   56 RWQNSLRHNLSFNDCFIKIPRRPDRPGKGSYWALHPSAFDMFENGSLLRRRKRFRVLK  113 (277)
T ss_pred             HHHHHhhccccccceeeecCCCCCCCCCccceeeccchhhhcccchHHHHhhhhhhcc
Confidence            3999999999999999999999999999999999998   789999999988766544

>KOG2294|consensus

Probab=99.72  E-value=2.4e-18  Score=148.63  Aligned_cols=52  Identities=54%  Similarity=0.934  Sum_probs=45.3

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc----ccccCCccccccCCC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ----KLEEGGGRYRNVRRK   52 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~----~~~~g~~rrr~~r~~   52 (147)
                      .||||||||||||+||+||+|..+++|||+||+|+++    +|.+|.++||+++.+
T Consensus       175 gWqNSIRHNLSLn~cF~Kvpr~~~~~gKg~~W~ldP~~~~~~~~~g~~~rr~~~~~  230 (454)
T KOG2294|consen  175 GWKNSIRHNLSLNKCFVKVPRERGRPGKGNYWTLDPDDENNMFDNGSFRRRRRSKS  230 (454)
T ss_pred             cchhhcccccccccCccccCCcccCCCCCCccccCcchhccccccccccccccccc
Confidence            4999999999999999999999998999999999998    566677877766433

>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []

Probab=99.72  E-value=6.8e-19  Score=127.73  Aligned_cols=50  Identities=56%  Similarity=0.971  Sum_probs=43.0

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVR   50 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r   50 (147)
                      .||||||||||+|+||+||++..+.+|||+||+|+++   .+.++.++++++|
T Consensus        44 ~WknSIRHnLS~~~~F~kv~~~~~~~gkg~~W~i~~~~~~~~~~~~~~~~~~~   96 (96)
T PF00250_consen   44 GWKNSIRHNLSLNKCFVKVPRDPSEPGKGSYWTIDPEAIEEFEKGRFKRRRKR   96 (96)
T ss_dssp             HHHHHHHHHHHHSTTEEEESCCTSSSSSSEEEEE-CTHHHHHHHSCCSSSSSS
T ss_pred             hhhhHHhhhccccceeeecCcCCCCCCCceeEEeCHHHHHHHhcchhhhhhcc
Confidence            4999999999999999999998877899999999999   6667777776654

Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....

>cd00059 FH Forkhead (FH), also known as a "winged helix"

Probab=99.71  E-value=3e-18  Score=120.51  Aligned_cols=35  Identities=74%  Similarity=1.278  Sum_probs=33.3

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD   35 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~   35 (147)
                      .||||||||||+|+||+||+|..+.+|||+||+||
T Consensus        44 gWknSIRHnLS~n~~F~kv~r~~~~~gkg~~W~i~   78 (78)
T cd00059          44 GWQNSIRHNLSLNKCFVKVPREPDEPGKGSYWTLD   78 (78)
T ss_pred             CCccceeEecccccceEECCCCCCCCCCCCeeeeC
Confidence            59999999999999999999998778999999986

FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.

>smart00339 FH FORKHEAD

Probab=99.65  E-value=4e-17  Score=117.10  Aligned_cols=39  Identities=64%  Similarity=1.079  Sum_probs=36.3

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcccc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKL   39 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~~   39 (147)
                      .||||||||||+|+||+||+|..+.+|||+||+|++++.
T Consensus        44 ~WknSIRHnLS~n~~F~kv~~~~~~~gkg~~W~i~~~~~   82 (89)
T smart00339       44 GWQNSIRHNLSLNDCFVKVPREGDRPGKGSYWTLDPDAE   82 (89)
T ss_pred             ccccccccccchhhceeecCcCCCCCCCCCEEEECccHH
Confidence            599999999999999999999888789999999999854

FORKHEAD, also known as a "winged helix"

>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]

Probab=98.97  E-value=1.8e-10  Score=106.30  Aligned_cols=37  Identities=70%  Similarity=1.090  Sum_probs=36.1

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ   37 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~   37 (147)
                      +||||||||||||++|.||||....+|||+||+++.+
T Consensus       380 ~w~nSiRhnlSlNksf~kvP~sa~~pGKg~fw~i~~s  416 (610)
T COG5025         380 AWQNSIRHNLSLNKSFEKVPRSASQPGKGCFWKIDYS  416 (610)
T ss_pred             ccCchhhhhhhhccccccCCCCcCCCCCcccCccChh
Confidence            6999999999999999999999999999999999998

>KOG4385|consensus

Probab=98.93  E-value=5.7e-11  Score=107.04  Aligned_cols=113  Identities=20%  Similarity=0.253  Sum_probs=69.1

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCccccccCCccccccC-CCcchhhhhcccCCCCCCCCCCCCcccCC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVR-RKSSDIQHRKQAHRPKPAPSENLNTAYTN   79 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~~~~g~~rrr~~r-~~~~~~~~~~~~~~~~~~ps~~~~~~~~~   79 (147)
                      ||||+||||||||+||++|+.     -||.-|++|...|.    +||-.+ ...-..-.......+++.+..+.-.+..+
T Consensus       411 TWKnAVRHNLSLHKCF~RVEn-----vkgavwtvDe~e~~----krr~~k~~g~~sl~~n~~~~~~~~~~~~a~l~~al~  481 (581)
T KOG4385|consen  411 TWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDEREFQ----KRRPQKITGSPSLIGNMATLLGNGGAPNAALQAALA  481 (581)
T ss_pred             hHhHHHhhhhHHHHHHHHHHH-----Hhcceeeeehhhhh----hhcCccccCchhhhcccccccCCCcchhHHHHHHhh
Confidence            799999999999999999987     58999999987652    222111 11112222233334444444333444556


Q ss_pred             CCCCCCCCCCccchhHHHHHHhhhhhccccccccchhhcccccCCC
Q psy4401          80 NNSIAPGENLNKLEDKLDDTLMESEISMTDDIDEDLILSNILLSGD  125 (147)
Q Consensus        80 ~~s~~p~~~~~~~~~~~~~~~~~~~~s~~~di~~~~~~~~~~~~~s  125 (147)
                      +++.+.-.+..+..+-...++.   ..+.+|+++.+.+..++.+.+
T Consensus       482 ~~~~~lls~a~~~~~~s~~~Le---~~~~~~~~~~~~~~~sp~~~~  524 (581)
T KOG4385|consen  482 ENSLPLLSEAGMGNNWSVGELE---FAKHEDVNGSMEHNPSPGGHS  524 (581)
T ss_pred             cCccccccchhccCCcchhhHH---HHHHhhcccccccCCCCCCCC
Confidence            6777766666666662222221   255677888888777775333

>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]

Probab=98.37  E-value=3.4e-07  Score=84.88  Aligned_cols=39  Identities=41%  Similarity=0.627  Sum_probs=36.1

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcccc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKL   39 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~~   39 (147)
                      .|+|||||||++++.|+||.+..+-+|||+||.+.|..+
T Consensus       129 ~~~~sIr~Nls~~~a~~~i~g~~g~~~~g~~~~igP~~~  167 (610)
T COG5025         129 RWQNSIRHNLSLNDAFIKIEGRNGAKVKGHFWSIGPGHE  167 (610)
T ss_pred             hhhhhhhcccccCceEEEEeccCCccccceeeccCCCcc
Confidence            499999999999999999999998889999999999743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
2a3s_A	101	Solution Structure And Dynamics Of Dna-Binding Doma		3e-10
1jxs_A	98	Solution Structure Of The Dna-Binding Domain Of Int		4e-10
2c6y_A	111	Crystal Structure Of Interleukin Enhancer-Binding F		6e-10
1d5v_A	94	Solution Structure Of The Forkhead Domain Of The Ad		3e-09
2hfh_A	109	The Nmr Structures Of A Winged Helix Protein: Genes		5e-09
2hdc_A	97	Structure Of Transcription Factor GenesisDNA COMPLE		6e-09
1vtn_C	102	Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Reco		5e-08
1kq8_A	100	Solution Structure Of Winged Helix Protein Hfh-1 Le		1e-04

>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of Myocyte Nuclear Factor Length = 101

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDL---QKLEEGGGRYRNVR 50
          NSIRHNLSLN+ F+KVPRS+++PGKG FW++D     KL E   R R  R
Sbjct: 49 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASEAKLVEQAFRKRRQR 98

>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Interleukin Enhancer Binding Factor Length = 98

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDL---QKLEEGGGRYRNVR 50
          NSIRHNLSLN+ F+KVPRS+++PGKG FW++D     KL E   R R  R
Sbjct: 49 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98

>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1 Bound To Dna Length = 111

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 30/32 (93%)
Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSLN+ F+KVPRS+++PGKG FW++D
Sbjct: 62 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRID 93

>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12) Length = 94

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 27/32 (84%)
Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSLN+CFVKVPR   +PGKG +W LD
Sbjct: 50 NSIRHNLSLNECFVKVPRDDKKPGKGSYWTLD 81

>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20 Structures Length = 109

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ 37
          NSIRHNLSLN CFVK+PR    PGKG +W LD Q
Sbjct: 49 NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQ 82

>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX Length = 97

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 26/34 (76%)
Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ 37
          NSIRHNLSLN CFVK+PR    PGKG +W LD Q
Sbjct: 48 NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQ 81

>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition Motif Resembles Histone H5 Length = 102

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKL 34
          NSIRH+LS N CFVKV RS D+PGKG +W L
Sbjct: 49 NSIRHSLSFNDCFVKVARSPDKPGKGSYWAL 79

>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1 Length = 100

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 4  NSIRHNLSLNKCFVKVPRSKDQP-GKGGFWKLD 35
          NS+RHNLSLN CFVKV R   +P GK  +W L+
Sbjct: 48 NSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
2hfh_A	109	Genesis, HFH-2; HNF-3 homologues, winged helix pro	2e-21
1vtn_C	102	HNF-3/FORK head DNA-recognition motif; protein-DNA	4e-21
2hdc_A	97	Protein (transcription factor); structure, dyanami	6e-20
2c6y_A	111	Forkhead box protein K2; transcription regulation,	6e-20
1kq8_A	100	HFH-1, hepatocyte nuclear factor 3 forkhead homolo	6e-18
3g73_A	142	Forkhead box protein M1; DNA-binding domain, forkh	2e-17
1e17_A	150	AFX; DNA binding domain, winged helix; NMR {Homo s	3e-16
3bpy_A	85	FORK head domain, forkhead transcription factor FO	1e-15
3coa_C	117	Forkhead box protein O1; winged helix, forkhead do	2e-15
2a07_F	93	Forkhead box protein P2; double-helix, swapping, h	1e-14
3l2c_A	110	Forkhead box protein O4; winged helix, transcripti	1e-14

>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 109

 Score = 82.4 bits (204), Expect = 2e-21
 Identities = 28/59 (47%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD---LQKLEEGGGRYRNVRRKSSDIQHR 59
           NSIRHNLSLN CFVK+PR    PGKG +W LD       + G    R  R K     H 
Sbjct: 49  NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRLQHHHH 107

>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A Length = 102

 Score = 81.2 bits (201), Expect = 4e-21
 Identities = 27/52 (51%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD---LQKLEEGGGRYRNVRRK 52
           NSIRH+LS N CFVKV RS D+PGKG +W L        E G    R  R K
Sbjct: 49  NSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFK 100

>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 97

 Score = 78.1 bits (193), Expect = 6e-20
 Identities = 26/50 (52%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD---LQKLEEGGGRYRNVR 50
          NSIRHNLSLN CFVK+PR    PGKG +W LD       + G    R  R
Sbjct: 48 NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97

>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A Length = 111

 Score = 78.1 bits (193), Expect = 6e-20
 Identities = 23/32 (71%), Positives = 30/32 (93%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSLN+ F+KVPRS+++PGKG FW++D
Sbjct: 62 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRID 93

>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14 Length = 100

 Score = 72.7 bits (179), Expect = 6e-18
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQP-GKGGFWKLD---LQKLEEGGGRYRNVRRKSS 54
           NS+RHNLSLN CFVKV R   +P GK  +W L+        +G   +R  R + S
Sbjct: 48  NSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGV--FRRRRYRLS 100

>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens} Length = 142

 Score = 72.6 bits (178), Expect = 2e-17
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD---LQKLEEGGGRYRNVRRKSSDIQHRK 60
           NSIRHNLSL+  FV+        GK  FW +     + L                 +H +
Sbjct: 65  NSIRHNLSLHDMFVRET---SANGKVSFWTIHPSANRYLTLDQVFKPLDPGSPQLPEHLE 121

Query: 61  -QAHRPKPAPSENLNT 75
            Q  RP P    N+  
Sbjct: 122 SQQKRPNPELRRNMTI 137

>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens} SCOP: a.4.5.14 Length = 85

 Score = 66.6 bits (163), Expect = 1e-15
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSL+  F+KV    +  GK  +W L+
Sbjct: 56 NSIRHNLSLHSKFIKVHN--EATGKSSWWMLN 85

>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A Length = 117

 Score = 67.1 bits (164), Expect = 2e-15
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRNVRRKSSDIQHRK 60
           NSIRHNLSL+  F++V    +  GK  +W L+ +  + G    R      ++ +  K
Sbjct: 62  NSIRHNLSLHSKFIRVQN--EGTGKSSWWMLNPEGGKSGKSPRRRAASMDNNSKFAK 116

>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F Length = 93

 Score = 64.2 bits (157), Expect = 1e-14
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 5/32 (15%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          N++RHNLSL+KCFV+V        KG  W +D
Sbjct: 49 NAVRHNLSLHKCFVRVEN-----VKGAVWTVD 75

>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} PDB: 3co6_C* Length = 110

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 4   NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
           NSIRHNLSL+  F+KV    +  GK  +W L+
Sbjct: 75  NSIRHNLSLHSKFIKVHN--EATGKSSWWMLN 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
1vtn_C	102	HNF-3/FORK head DNA-recognition motif; protein-DNA	99.85
2hdc_A	97	Protein (transcription factor); structure, dyanami	99.85
1kq8_A	100	HFH-1, hepatocyte nuclear factor 3 forkhead homolo	99.84
2hfh_A	109	Genesis, HFH-2; HNF-3 homologues, winged helix pro	99.83
2c6y_A	111	Forkhead box protein K2; transcription regulation,	99.82
1e17_A	150	AFX; DNA binding domain, winged helix; NMR {Homo s	99.73
3coa_C	117	Forkhead box protein O1; winged helix, forkhead do	99.73
3bpy_A	85	FORK head domain, forkhead transcription factor FO	99.67
3l2c_A	110	Forkhead box protein O4; winged helix, transcripti	99.66
2a07_F	93	Forkhead box protein P2; double-helix, swapping, h	99.63
3g73_A	142	Forkhead box protein M1; DNA-binding domain, forkh	99.58

>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A

Probab=99.85  E-value=1.1e-22  Score=148.51  Aligned_cols=52  Identities=52%  Similarity=0.809  Sum_probs=48.0

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccCCC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVRRK   52 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r~~   52 (147)
                      .||||||||||||+||+||+|..+++|||+||+|+++   +|.+|.++||++|.+
T Consensus        46 gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~p~~~~~f~~g~~~rr~~~~~  100 (102)
T 1vtn_C           46 RWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFK  100 (102)
T ss_dssp             HHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEECGGGCSTTCSSCSSSCSSCCC
T ss_pred             chhhhhhhhhhhccceEecCCCCCCCCCcceEEECcCHHHHhhcCCeeccccccc
Confidence            4999999999999999999999988999999999998   788999988888755

>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14

Probab=99.85  E-value=4.6e-23  Score=149.40  Aligned_cols=50  Identities=54%  Similarity=0.926  Sum_probs=46.5

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVR   50 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r   50 (147)
                      .||||||||||||+||+||+|..+++|||+||+|+++   +|.+|.++|||+|
T Consensus        45 gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p~~~~~f~~g~~~rrr~r   97 (97)
T 2hdc_A           45 AWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR   97 (97)
T ss_dssp             SHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCTTHHHHHHHSCCCSSSCC
T ss_pred             ceehhhhhhhhhhhheeecCCCCCCCCCcceEEECcCHHHHHhCCCccCCCCC
Confidence            5999999999999999999999988999999999998   7889999888764

>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14

Probab=99.84  E-value=1.2e-22  Score=147.83  Aligned_cols=50  Identities=48%  Similarity=0.791  Sum_probs=34.7

Q ss_pred             CccccccccccCCCceEeccCCCCCC-CCceeeecCcc---ccccCCccccccC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQP-GKGGFWKLDLQ---KLEEGGGRYRNVR   50 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~-GKg~~W~l~~~---~~~~g~~rrr~~r   50 (147)
                      .||||||||||||+||+||+|..+++ |||+||+|+|+   +|.+|.++||++|
T Consensus        45 gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~p~~~~~f~~g~~~rrr~r   98 (100)
T 1kq8_A           45 GWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYR   98 (100)
T ss_dssp             CCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECCC-----------------
T ss_pred             ceecccchheehhheeeecCCCCCCCCCCCeEEEECcCHHHHHhCCCcccCCCC
Confidence            59999999999999999999998888 99999999998   6899999988876

>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14

Probab=99.83  E-value=2.3e-22  Score=148.50  Aligned_cols=53  Identities=53%  Similarity=0.873  Sum_probs=42.6

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccCCCc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVRRKS   53 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r~~~   53 (147)
                      .||||||||||||+||+||+|..+++|||+||+|+++   +|.+|.++|||++.+.
T Consensus        46 gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p~~~~~f~~g~~~Rrr~~~~~  101 (109)
T 2hfh_A           46 AWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKR  101 (109)
T ss_dssp             GGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCTTCCHHHHSSSCC--------
T ss_pred             ccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECccHHHHHhCCCcccCcccccc
Confidence            4999999999999999999999989999999999998   6789999888876543

>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A

Probab=99.82  E-value=3e-22  Score=148.26  Aligned_cols=50  Identities=58%  Similarity=0.915  Sum_probs=45.8

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVR   50 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r   50 (147)
                      .||||||||||||+||+||+|..+++|||+||+|+++   +|.++.+||||+|
T Consensus        59 gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p~~~~~~~~~~~r~rr~r  111 (111)
T 2c6y_A           59 GWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR  111 (111)
T ss_dssp             HHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEECHHHHHHHHHHHTCCCCCC
T ss_pred             eeecchhHHhhhhhhhccccCCCCCCCCcceEEeChhHHHhhhcccccccCCC
Confidence            4999999999999999999999888999999999998   6788888888764

>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A

Probab=99.73  E-value=2.7e-19  Score=133.49  Aligned_cols=46  Identities=37%  Similarity=0.571  Sum_probs=31.6

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCccccccCCccccc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEGGGRYRN   48 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~~~~g~~rrr~   48 (147)
                      .||||||||||||+||+||+++  ++|||+||+|+++....+..+||+
T Consensus        59 gWqNSIRHNLSln~~F~Kv~~~--~~GKg~~W~l~p~~~~~~~~~Rrr  104 (117)
T 3coa_C           59 GWKNSIRHNLSLHSKFIRVQNE--GTGKSSWWMLNPEGGKSGKSPRRR  104 (117)
T ss_dssp             HHHHHHHHHHHHCTTEEEECCS--STTCCCEEEECC------------
T ss_pred             cchhccchheecchhhcccccC--CCCCcceEEECccccccCcccccc
Confidence            4999999999999999999985  459999999999976555544443

>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}

Probab=99.67  E-value=4e-18  Score=120.66  Aligned_cols=33  Identities=48%  Similarity=0.764  Sum_probs=30.3

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD   35 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~   35 (147)
                      .||||||||||||+||+||+|+  ++|||+||+||
T Consensus        53 gWqNSIRHNLSln~~F~Kv~r~--~~GKg~~W~ld   85 (85)
T 3bpy_A           53 GWKNSIRHNLSLHSKFIKVHNE--ATGKSSWWMLN   85 (85)
T ss_dssp             HHHHHHHHHHHHCTTEEEECCC--STTCCCEEEEC
T ss_pred             CcchhhhhhccHhhhheeCCCC--CCCCCCceecC
Confidence            3999999999999999999985  45999999986

>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*

Probab=99.66  E-value=7.1e-18  Score=124.51  Aligned_cols=36  Identities=44%  Similarity=0.685  Sum_probs=30.7

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCccc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQK   38 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~   38 (147)
                      .||||||||||||+||+||+|.  ++|||+||+|++++
T Consensus        72 gWqNSIRHNLSln~~F~Kv~r~--~~GKG~~W~l~p~~  107 (110)
T 3l2c_A           72 GWKNSIRHNLSLHSKFIKVHNE--ATGKSSWWMLNPEG  107 (110)
T ss_dssp             HHHHHHHHHHHHCTTEEEECCC--STTCCCEEEEC---
T ss_pred             CcccchhhhccHhhhheeCCCC--CCCCCceEEECccc
Confidence            3999999999999999999985  45999999999985

>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F

Probab=99.63  E-value=5.9e-18  Score=121.81  Aligned_cols=35  Identities=46%  Similarity=0.833  Sum_probs=31.8

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCccccc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLE   40 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~~~   40 (147)
                      .||||||||||||+||+||++     |||+||+|+++.+.
T Consensus        46 gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~~~~~~   80 (93)
T 2a07_F           46 TWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDEVEYQ   80 (93)
T ss_dssp             HHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCHHHHH
T ss_pred             ccccccceeeehhhceeecCC-----CCCCeeEEChHHhh
Confidence            499999999999999999984     89999999998753

>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}

Probab=99.58  E-value=1.6e-16  Score=121.94  Aligned_cols=45  Identities=33%  Similarity=0.423  Sum_probs=32.7

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCccc----cccCCccccc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQK----LEEGGGRYRN   48 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~----~~~g~~rrr~   48 (147)
                      .||||||||||||+||+|+.   +++|||+||+|+++.    +.++.+++.+
T Consensus        62 gWqNSIRHNLSln~~F~r~~---~~~GKg~~W~i~p~~~~~l~~d~~~k~~~  110 (142)
T 3g73_A           62 GWKNSIRHNLSLHDMFVRET---SANGKVSFWTIHPSANRYLTLDQVFKPLD  110 (142)
T ss_dssp             THHHHHHHHHHHCTTEEEEE---CTTSCCEEEEECTTTCCCCCCC-------
T ss_pred             CccchhhhhhhhhhhheecC---CCCCCCceEEECccccccchhhhhhcccc
Confidence            59999999999999999875   345999999999994    3445555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d2hdca_	97	a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [Ta	3e-13
d2c6ya1	98	a.4.5.14 (A:1-98) Interleukin enhancer binding fac	4e-13
d1d5va_	94	a.4.5.14 (A:) Adipocyte-transcription factor FREAC	6e-12
d1kq8a_	75	a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Ra	1e-10
d3bpya1	85	a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapie	2e-10
d2a07f1	82	a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP	6e-09

>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.5 bits (144), Expect = 3e-13
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEEG-GGRYRNVRRK 52
          NSIRHNLSLN CFVK+PR    PGKG +W LD Q  +    G +   R++
Sbjct: 48 NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97

>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Interleukin enhancer binding factor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 4e-13
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD---LQKLEEGGGRYRNVR 50
          NSIRHNLSLN+ F+KVPRS+++PGKG FW++D     KL E   R R  R
Sbjct: 49 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98

>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Adipocyte-transcription factor FREAC-11 (s12, fkh-14)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 6e-12
 Identities = 24/32 (75%), Positives = 27/32 (84%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSLN+CFVKVPR   +PGKG +W LD
Sbjct: 50 NSIRHNLSLNECFVKVPRDDKKPGKGSYWTLD 81

>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 75

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: HFH-1 (HNF-3 forkhead homolog-1)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (125), Expect = 1e-10
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQP-GKGGFWKLD 35
          NS+RHNLSLN CFVKV R   +P GK  +W L+
Sbjct: 42 NSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 74

>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Afx (Foxo4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 2e-10
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD 35
          NSIRHNLSL+  F+KV    +  GK  +W L+
Sbjct: 56 NSIRHNLSLHSKFIKVHN--EATGKSSWWMLN 85

>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Forkhead box protein P2, FOXP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 6e-09
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 5/38 (13%)

Query: 4  NSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKLEE 41
          N++RHNLSL+KCFV+V        KG  W +D  + ++
Sbjct: 48 NAVRHNLSLHKCFVRVEN-----VKGAVWTVDEVEYQK 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d2hdca_	97	Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}	99.78
d2c6ya1	98	Interleukin enhancer binding factor {Human (Homo s	99.78
d1kq8a_	75	HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv	99.74
d1d5va_	94	Adipocyte-transcription factor FREAC-11 (s12, fkh-	99.73
d3bpya1	85	Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}	99.63
d2a07f1	82	Forkhead box protein P2, FOXP2 {Human (Homo sapien	99.55

>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Genesis
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=2.8e-21  Score=138.25  Aligned_cols=50  Identities=54%  Similarity=0.926  Sum_probs=44.9

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVR   50 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r   50 (147)
                      .||||||||||||+||+||++..+++|||+||+|+++   .|.+|.++|||+|
T Consensus        45 gWkNSIRHnLSln~~F~kv~~~~~~~gKg~~W~l~p~~~~~~~~~~~~rrrkr   97 (97)
T d2hdca_          45 AWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR   97 (97)
T ss_dssp             SHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCTTHHHHHHHSCCCSSSCC
T ss_pred             CchhhhhhhcchhhhhcccCCCCCCCCCCcEEEECccHHHHhhcCCccccCCC
Confidence            5999999999999999999999988899999999998   5677887777654

>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Interleukin enhancer binding factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.8e-21  Score=137.76  Aligned_cols=50  Identities=58%  Similarity=0.915  Sum_probs=43.0

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCccccccC
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGGRYRNVR   50 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~rrr~~r   50 (147)
                      .||||||||||+|+||+||+|..+++|||+||+|+|+   .|.++.++||++|
T Consensus        46 gWkNSIRHnLS~n~~F~kv~r~~~~~gKg~~W~l~p~~~~~~~~~~~~krr~r   98 (98)
T d2c6ya1          46 GWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR   98 (98)
T ss_dssp             HHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEECHHHHHHHHHHHTCCCCCC
T ss_pred             CcchhhchhcccccceEeccCCCCCCCCCceEEECccHHhhhhcchhhccCCC
Confidence            4999999999999999999999988999999999988   5556666666543

>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: HFH-1 (HNF-3 forkhead homolog-1)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=6.5e-20  Score=125.75  Aligned_cols=36  Identities=56%  Similarity=0.958  Sum_probs=34.3

Q ss_pred             CccccccccccCCCceEeccCCCCCC-CCceeeecCc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQP-GKGGFWKLDL   36 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~-GKg~~W~l~~   36 (147)
                      .||||||||||+|+||+||+|..+++ |||+||+|+|
T Consensus        39 gWkNSIRHnLS~n~~F~kv~r~~~~~~gKg~~W~l~P   75 (75)
T d1kq8a_          39 GWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNP   75 (75)
T ss_dssp             CCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECCC
T ss_pred             cchhHhhecccccceeEecCCCCCCCCCCccEEEeCc
Confidence            59999999999999999999998888 9999999987

>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Adipocyte-transcription factor FREAC-11 (s12, fkh-14)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.8e-19  Score=128.17  Aligned_cols=44  Identities=59%  Similarity=1.021  Sum_probs=39.9

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcc---ccccCCc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQ---KLEEGGG   44 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~---~~~~g~~   44 (147)
                      .||||||||||+|+||+||+|..+++|||+||+|+++   .|.+|.+
T Consensus        47 gWkNSIRHnLSln~~F~kv~~~~~~~gkg~~W~l~p~~~~~f~~g~~   93 (94)
T d1d5va_          47 GWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSF   93 (94)
T ss_dssp             THHHHHHHHHHHCSSEEECCCCTTSCSCCCCEEECCSCSSTTSCSSC
T ss_pred             chHHHHHHHccccceEEEcCcCCCCCCCCceEEECccHHHHHhcCCC
Confidence            5999999999999999999999988999999999999   5666654

>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Afx (Foxo4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.1e-17  Score=116.89  Aligned_cols=32  Identities=50%  Similarity=0.821  Sum_probs=30.3

Q ss_pred             ccccccccccCCCceEeccCCCCCCCCceeeecC
Q psy4401           2 RVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLD   35 (147)
Q Consensus         2 WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~   35 (147)
                      ||||||||||||+||+||+|+..  |||+||+||
T Consensus        54 WkNSIRHnLSl~~~F~kv~r~~~--gKg~~W~i~   85 (85)
T d3bpya1          54 WKNSIRHNLSLHSKFIKVHNEAT--GKSSWWMLN   85 (85)
T ss_dssp             HHHHHHHHHHHCTTEEEECCCST--TCCCEEEEC
T ss_pred             chhhHHHHhhHhhheeeCCCCCC--CCCceeecC
Confidence            99999999999999999999765  999999996

>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: Forkhead box protein P2, FOXP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.6e-17  Score=113.04  Aligned_cols=34  Identities=47%  Similarity=0.841  Sum_probs=30.9

Q ss_pred             CccccccccccCCCceEeccCCCCCCCCceeeecCcccc
Q psy4401           1 MRVNSIRHNLSLNKCFVKVPRSKDQPGKGGFWKLDLQKL   39 (147)
Q Consensus         1 ~WkNSIRHNLSLn~~F~Kv~r~~~~~GKg~~W~l~~~~~   39 (147)
                      .||||||||||+|+||+||++     |||+||+|+++.+
T Consensus        45 gWkNSIRHnLS~n~~F~kv~~-----~kG~~W~i~~~~~   78 (82)
T d2a07f1          45 TWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDEVEY   78 (82)
T ss_dssp             HHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCHHHH
T ss_pred             ccchhHhHhcccccceEeCCC-----CCCCEEEECHHHH
Confidence            499999999999999999985     8999999998754