Psyllid ID: psy4404

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDNYLDVISFLYLDQNNPES
Secondary Structure (PSIPRED)
cccccccccccHHHHcccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccHHHHHcEEccccccccccccEEccccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHHccccEEccccccEEccHHHHHHHHHHHcccccccccccccHHcccccHEEHHHHccccc
Coil and Loop (DISEMBL)
MILVICQYCEVRLESNSKELLEHCktcknlsrpdvsfkYVCLYQkcsyhtgnsdhmRRHIRrhtgekafhcphceyrcsqQSALYNHLKrhtgekpfkcticshkaaRKDHMKRHLQLKHNadlssmiklpkdnyLDVISFLYldqnnpes
Flexible Loop (DISEMBL)
MILVICQYCEVRLESNSKELLEHCKTcknlsrpdvsFKYVCLYQKCSyhtgnsdhMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDNYLDVISFLyldqnnpes
Low Complexity Region (SEG)
MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDNYLDVISFLYLDQNNPES
Disordered region (IsUnstruct)
*ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAAR******HLQLKHNADLSSMIKLPKDNYLDVISFLYL*******
Disordered Region (DISOPRED)
MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDNYLDV*************
Disordered Region (DISEMBL)
MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDNYLDVISFLYLDQNNPES
Disordered Region (DISPRO)
MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDNYLDVISFLY*DQN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLPKDNYLDVISFLYLDQNNPES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
P08046	533	Early growth response pro	yes	N/A	0.529	0.150	0.45	9e-16
P18146	543	Early growth response pro	yes	N/A	0.529	0.147	0.45	9e-16
P08154	508	Early growth response pro	yes	N/A	0.529	0.157	0.45	1e-15
A4II20	498	Early growth response pro	yes	N/A	0.529	0.160	0.45	2e-15
Q9WUF2	478	Early growth response pro	no	N/A	0.642	0.202	0.39	3e-15
Q00911	478	Early growth response pro	no	N/A	0.642	0.202	0.39	4e-15
P26632	511	Early growth response pro	yes	N/A	0.529	0.156	0.45	5e-15
Q6GQH4	497	Early growth response pro	N/A	N/A	0.529	0.160	0.45	7e-15
Q05215	486	Early growth response pro	no	N/A	0.695	0.216	0.370	1e-14
Q9GL32	482	Early growth response pro	yes	N/A	0.602	0.188	0.387	1e-14

>sp|P08046|EGR1_MOUSE Early growth response protein 1 OS=Mus musculus GN=Egr1 PE=1 SV=2

 Score = 82.4 bits (202), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 336 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 395

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 396 CDICGRKFARSDERKRHTKI 415

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-CGCCCCCGC-3'(EGR-site). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.
Mus musculus (taxid: 10090)

>sp|P18146|EGR1_HUMAN Early growth response protein 1 OS=Homo sapiens GN=EGR1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 338 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 397

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 398 CDICGRKFARSDERKRHTKI 417

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-CGCCCCCGC-3'(EGR-site). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.

Homo sapiens (taxid: 9606)

>sp|P08154|EGR1_RAT Early growth response protein 1 OS=Rattus norvegicus GN=Egr1 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 311 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 370

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 371 CDICGRKFARSDERKRHTKI 390

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-CGCCCCCGC-3'(EGR-site). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.

Rattus norvegicus (taxid: 10116)

>sp|A4II20|EGR1_XENTR Early growth response protein 1 OS=Xenopus tropicalis GN=egr1 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 307 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 366

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 367 CDICGRKFARSDERKRHTKI 386

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-CGCCCCCGC-3'(EGR-site). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.

Xenopus tropicalis (taxid: 8364)

>sp|Q9WUF2|EGR4_MOUSE Early growth response protein 4 OS=Mus musculus GN=Egr4 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 32  RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
           RP V   + C  + C      SD + RH+R HTG K F C  C    S+   L  H++ H
Sbjct: 366 RPHVK-AFACPVESCVRSFARSDELNRHLRIHTGHKPFQCRICLRNFSRSDHLTTHVRTH 424

Query: 92  TGEKPFKCTICSHKAARKDHMKRH--LQLKHNADLSSMIK 129
           TGEKPF C +C  + AR D  KRH  + LK  A     +K
Sbjct: 425 TGEKPFACDVCGRRFARSDEKKRHSKVHLKQKARAEERLK 464

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCGGGGGCG-3' (GSG). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.

Mus musculus (taxid: 10090)

>sp|Q00911|EGR4_RAT Early growth response protein 4 OS=Rattus norvegicus GN=Egr4 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 32  RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
           RP V   + C  + C      SD + RH+R HTG K F C  C    S+   L  H++ H
Sbjct: 366 RPHVK-AFACPVESCVRTFARSDELNRHLRIHTGHKPFQCRICLRNFSRSDHLTTHVRTH 424

Query: 92  TGEKPFKCTICSHKAARKDHMKRH--LQLKHNADLSSMIK 129
           TGEKPF C +C  + AR D  KRH  + LK  A     +K
Sbjct: 425 TGEKPFACDVCGRRFARSDEKKRHSKVHLKQKARAEERLK 464

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCGGGGGCG-3' (GSG). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.

Rattus norvegicus (taxid: 10116)

>sp|P26632|EGR1_DANRE Early growth response protein 1 OS=Danio rerio GN=egr1 PE=2 SV=2

 Score = 80.1 bits (196), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 311 YACPVETCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 370

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 371 CEICGRKFARSDERKRHTKI 390

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-CGCCCCCGC-3'(EGR-site). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.

Danio rerio (taxid: 7955)

>sp|Q6GQH4|EGR1A_XENLA Early growth response protein 1-A OS=Xenopus laevis GN=egr1-a PE=2 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 306 YGCPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 365

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 366 CDICGRKFARSDERKRHTKI 385

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-CGCCCCCGC-3'(EGR-site). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.

Xenopus laevis (taxid: 8355)

>sp|Q05215|EGR4_HUMAN Early growth response protein 4 OS=Homo sapiens GN=EGR4 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 24  CKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSA 83
           C T     RP     + C  + C      SD + RH+R HTG K F C  C    S+   
Sbjct: 366 CSTRCFCPRPHAK-AFACPVESCVRSFARSDELNRHLRIHTGHKPFQCRICLRNFSRSDH 424

Query: 84  LYNHLKRHTGEKPFKCTICSHKAARKDHMKRH--LQLKHNADLSSMIK 129
           L  H++ HTGEKPF C +C  + AR D  KRH  + LK  A     +K
Sbjct: 425 LTTHVRTHTGEKPFACDVCGRRFARSDEKKRHSKVHLKQKARAEERLK 472

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCGGGGGCG-3' (GSG). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.

Homo sapiens (taxid: 9606)

>sp|Q9GL32|EGR4_BOVIN Early growth response protein 4 OS=Bos taurus GN=EGR4 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           + C  + C      SD + RH+R HTG K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 376 FACPVESCVRSFARSDELNRHLRIHTGHKPFQCRICLRNFSRSDHLTTHVRTHTGEKPFA 435

Query: 99  CTICSHKAARKDHMKRH--LQLKHNADLSSMIK 129
           C +C  + AR D  KRH  + LK  A     +K
Sbjct: 436 CDVCGRRFARSDEKKRHSKVHLKQKARAEERLK 468

Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCGGGGGCG-3' (GSG). Activates the transcription of target genes whose products are required for mitogenesis and differentiation.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
340372899	416	PREDICTED: hypothetical protein LOC10064	0.721	0.262	0.357	8e-16
26332310	533	unnamed protein product [Mus musculus]	0.529	0.150	0.462	6e-15
260823164	1324	hypothetical protein BRAFLDRAFT_119781 [	0.496	0.056	0.493	2e-14
387015652	546	Early growth response protein 1 [Crotalu	0.529	0.146	0.45	2e-14
326433514	877	SP9 protein [Salpingoeca sp. ATCC 50818]	0.536	0.092	0.409	2e-14
326433513	819	SP9 protein, variant [Salpingoeca sp. AT	0.536	0.098	0.409	2e-14
351703238	537	Early growth response protein 1 [Heteroc	0.529	0.148	0.45	4e-14
332822105	524	PREDICTED: early growth response protein	0.529	0.152	0.45	5e-14
311250232	542	PREDICTED: early growth response protein	0.529	0.147	0.45	5e-14
291387419	533	PREDICTED: early growth response 1 isofo	0.529	0.150	0.45	5e-14

>gi|340372899|ref|XP_003384981.1| PREDICTED: hypothetical protein LOC100642133 [Amphimedon queenslandica]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 3/112 (2%)

Query: 10  EVRLESNSKELLEHCKTCKNLSRPDVSFK-YVCLYQKCSYHTGNSDHMRRHIRRHTGEKA 68
           +++ + +S+++       + +  P+ S + +VC Y  C      S H++ H+RRHTGE+ 
Sbjct: 260 KIKSDGDSEDVASSPSLSEPVLSPNGSSRIFVCTYPGCDKSYSKSSHLKAHLRRHTGERP 319

Query: 69  FHC--PHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQL 118
           F C  P CE+R S+   L  H ++HTG KPF CTIC  K  R DH+ +H+++
Sbjct: 320 FACNWPGCEWRFSRSDELARHERKHTGVKPFGCTICGKKFTRSDHLSKHVKI 371

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|26332310|dbj|BAC29885.1| unnamed protein product [Mus musculus]

 Score = 85.5 bits (210), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 45/80 (56%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C  H   SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 336 YACPVESCDRHFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 395

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 396 CDICGRKFARSDERKRHTKI 415

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260823164|ref|XP_002604053.1| hypothetical protein BRAFLDRAFT_119781 [Branchiostoma floridae] gi|229289378|gb|EEN60064.1| hypothetical protein BRAFLDRAFT_119781 [Branchiostoma floridae]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 49/77 (63%)

Query: 45  KCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSH 104
           +C Y T   DH+  H++ HTGEK F C  C YR + +  L  H+K HTGEKPFKC  C +
Sbjct: 299 ECGYRTAKKDHLTEHLKIHTGEKPFMCGECGYRTAHKCHLSEHMKTHTGEKPFKCDQCDY 358

Query: 105 KAARKDHMKRHLQLKHN 121
            AA+K HM RH+  KH+
Sbjct: 359 SAAQKTHMDRHIVAKHS 375

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387015652|gb|AFJ49945.1| Early growth response protein 1 [Crotalus adamanteus]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 335 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 394

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 395 CDICGRKFARSDERKRHTKI 414

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326433514|gb|EGD79084.1| SP9 protein [Salpingoeca sp. ATCC 50818]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 38  KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEK 95
           ++ C Y  C      S H++ H+RRHTGEK F C    C +R S+   L  H++ HTGEK
Sbjct: 787 QFRCTYNGCDKVYSKSSHLKAHMRRHTGEKPFVCTWKGCTWRFSRSDELARHMRSHTGEK 846

Query: 96  PFKCTICSHKAARKDHMKRHLQL 118
           PF C  C  + +R DH+K+H ++
Sbjct: 847 PFACEECGKRFSRSDHLKKHQRI 869

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|326433513|gb|EGD79083.1| SP9 protein, variant [Salpingoeca sp. ATCC 50818]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 38  KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEK 95
           ++ C Y  C      S H++ H+RRHTGEK F C    C +R S+   L  H++ HTGEK
Sbjct: 729 QFRCTYNGCDKVYSKSSHLKAHMRRHTGEKPFVCTWKGCTWRFSRSDELARHMRSHTGEK 788

Query: 96  PFKCTICSHKAARKDHMKRHLQL 118
           PF C  C  + +R DH+K+H ++
Sbjct: 789 PFACEECGKRFSRSDHLKKHQRI 811

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|351703238|gb|EHB06157.1| Early growth response protein 1 [Heterocephalus glaber]

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 332 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 391

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 392 CDICGRKFARSDERKRHTKI 411

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332822105|ref|XP_517958.3| PREDICTED: early growth response protein 1 [Pan troglodytes]

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 319 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 378

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 379 CDICGRKFARSDERKRHTKI 398

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|311250232|ref|XP_003124022.1| PREDICTED: early growth response protein 1 [Sus scrofa]

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 338 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 397

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 398 CDICGRKFARSDERKRHTKI 417

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291387419|ref|XP_002710286.1| PREDICTED: early growth response 1 isoform 2 [Oryctolagus cuniculus]

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 336 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 395

Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 396 CDICGRKFARSDERKRHTKI 415

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
UNIPROTKB|F1NUB6	186	ZNF513 "Uncharacterized protei	0.655	0.532	0.398	1.8e-16
WB|WBGene00007772	461	egrh-1 [Caenorhabditis elegans	0.728	0.238	0.401	4.6e-16
FB|FBgn0034946	400	CG3065 [Drosophila melanogaste	0.715	0.27	0.383	5.1e-16
UNIPROTKB|A6QL89	403	LOC407241 "Uncharacterized pro	0.596	0.223	0.397	6.7e-16
UNIPROTKB|D4ABG6	268	Znf513 "Zinc finger protein 51	0.602	0.339	0.404	1.3e-15
ZFIN|ZDB-GENE-030131-7844	442	klf15 "Kruppel-like factor 15"	0.609	0.208	0.378	1.5e-15
UNIPROTKB|Q6NTY6	475	egr1-b "Early growth response	0.529	0.168	0.45	1.7e-15
UNIPROTKB|A4II20	498	egr1 "Early growth response pr	0.529	0.160	0.45	1.9e-15
UNIPROTKB|E2QSR2	414	KLF15 "Uncharacterized protein	0.562	0.205	0.409	2e-15
MGI|MGI:1929988	415	Klf15 "Kruppel-like factor 15"	0.562	0.204	0.409	2e-15

UNIPROTKB|F1NUB6 ZNF513 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 41/103 (39%), Positives = 55/103 (53%)

Query:    23 HCKTCKNLSRPDVSFK-YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ 81
             H    K   R     K Y C  Q C Y  GN  +++RH R H+G+K F C  C Y C+Q 
Sbjct:    66 HLDNLKRHQRVHTGEKPYKC--QLCDYACGNLANLKRHGRIHSGDKPFQCSLCSYSCNQS 123

Query:    82 SALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLK-HNAD 123
               L  H+ RHTGEKPF+C  C++     D+ KRH ++  H A+
Sbjct:   124 MNLKRHMLRHTGEKPFQCRDCTYTTGHWDNYKRHQKIHGHTAE 166

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

WB|WBGene00007772 egrh-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 207 (77.9 bits), Expect = 4.6e-16, P = 4.6e-16
 Identities = 45/112 (40%), Positives = 55/112 (49%)

Query:    15 SNSKELLE-HCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH 73
             S S+EL    C+  K+   P     Y C    C      SD + RHIR HTG+K F C  
Sbjct:   349 STSEELKNIGCQKMKSSKMPLQDRPYKCPRDGCDRRFSRSDELTRHIRIHTGQKPFQCRI 408

Query:    74 CEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLS 125
             C    S+   L  H++ HTGEKPF C IC  K AR D  KRH ++ H    S
Sbjct:   409 CMRAFSRSDHLTTHVRTHTGEKPFSCDICGRKFARSDERKRHTKV-HKTSRS 459

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0001556 "oocyte maturation" evidence=IMP

GO:0060280 "negative regulation of ovulation" evidence=IMP

GO:0043407 "negative regulation of MAP kinase activity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

FB|FBgn0034946 CG3065 [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 5.1e-16, P = 5.1e-16
 Identities = 43/112 (38%), Positives = 58/112 (51%)

Query:    16 NSK-ELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--P 72
             NSK  ++   K        D   K+VC Y  C+   G S H+R H+  HTG K F C  P
Sbjct:    85 NSKIRIMPSVKLMATTLASDPKRKFVCPYDNCTKSYGKSSHLRSHLTWHTGIKPFVCSEP 144

Query:    73 HCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADL 124
              C    ++   L  HL+ HTGEKPF+C  C+ K +R DH+ +HL   H+  L
Sbjct:   145 KCGKGFTRSDELNRHLRTHTGEKPFECIQCTKKFSRSDHLTKHLAT-HDRQL 195

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

UNIPROTKB|A6QL89 LOC407241 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 204 (76.9 bits), Expect = 6.7e-16, P = 6.7e-16
 Identities = 37/93 (39%), Positives = 54/93 (58%)

Query:    41 CLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKPFK 98
             C +  CS     S H++ H+RRHTGEK F C  P C +R S+   L  H + H+G KP++
Sbjct:   312 CTFPGCSKMYTKSSHLKAHLRRHTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPYQ 371

Query:    99 CTICSHKAARKDHMKRHLQLKHNADLSSMIKLP 131
             C +C  K AR DH+ +H+++ H    SS +  P
Sbjct:   372 CPVCEKKFARSDHLSKHVKV-HRFPRSSRLPRP 403

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0010001 "glial cell differentiation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|D4ABG6 Znf513 "Zinc finger protein 513" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/94 (40%), Positives = 49/94 (52%)

Query:    23 HCKTCKNLSRPDVSFK-YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ 81
             H    K   R     K Y C    C Y  GN  +++RH R H+G+K F C  C Y C+Q 
Sbjct:   126 HLDNLKRHQRVHTGEKPYKC--PLCPYACGNLANLKRHGRIHSGDKPFRCSLCNYSCNQS 183

Query:    82 SALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
               L  H+ RHTGEKPF+C  C++     D+ KRH
Sbjct:   184 MNLKRHMLRHTGEKPFRCATCAYTTGHWDNYKRH 217

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-7844 klf15 "Kruppel-like factor 15" [Danio rerio (taxid:7955)]

 Score = 202 (76.2 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 36/95 (37%), Positives = 56/95 (58%)

Query:    34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRH 91
             D+   + C +  C+     S H++ H+RRHTGEK F C  P C++R S+   L  H + H
Sbjct:   342 DLIKMHKCTFPGCAKMYTKSSHLKAHLRRHTGEKPFACTWPGCDWRFSRSDELSRHRRSH 401

Query:    92 TGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS 126
             +G KP++C +C  K AR DH+ +H+++ H    SS
Sbjct:   402 SGVKPYQCPVCEKKFARSDHLSKHIKV-HRFPRSS 435

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q6NTY6 egr1-b "Early growth response protein 1-B" [Xenopus laevis (taxid:8355)]

 Score = 202 (76.2 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query:    39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
             Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct:   284 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 343

Query:    99 CTICSHKAARKDHMKRHLQL 118
             C IC  K AR D  KRH ++
Sbjct:   344 CDICGRKFARSDERKRHTKI 363

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|A4II20 egr1 "Early growth response protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 202 (76.2 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 36/80 (45%), Positives = 44/80 (55%)

Query:    39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
             Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct:   307 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 366

Query:    99 CTICSHKAARKDHMKRHLQL 118
             C IC  K AR D  KRH ++
Sbjct:   367 CDICGRKFARSDERKRHTKI 386

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|E2QSR2 KLF15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 200 (75.5 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 36/88 (40%), Positives = 52/88 (59%)

Query:    41 CLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKPFK 98
             C +  CS     S H++ H+RRHTGEK F C  P C +R S+   L  H + H+G KP++
Sbjct:   321 CTFPGCSKMYTKSSHLKAHLRRHTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPYQ 380

Query:    99 CTICSHKAARKDHMKRHLQLKHNADLSS 126
             C +C  K AR DH+ +H+++ H    SS
Sbjct:   381 CPVCEKKFARSDHLSKHIKV-HRFPRSS 407

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0010001 "glial cell differentiation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1929988 Klf15 "Kruppel-like factor 15" [Mus musculus (taxid:10090)]

 Score = 200 (75.5 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 36/88 (40%), Positives = 52/88 (59%)

Query:    41 CLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKPFK 98
             C +  CS     S H++ H+RRHTGEK F C  P C +R S+   L  H + H+G KP++
Sbjct:   322 CTFPGCSKMYTKSSHLKAHLRRHTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPYQ 381

Query:    99 CTICSHKAARKDHMKRHLQLKHNADLSS 126
             C +C  K AR DH+ +H+++ H    SS
Sbjct:   382 CPVCEKKFARSDHLSKHIKV-HRFPRSS 408

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010001 "glial cell differentiation" evidence=IDA

GO:0015758 "glucose transport" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	151
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	6e-04

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 35.1 bits (81), Expect = 6e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 55 HMRRHIRRHTGEKAFHCPHCEYRCSQ 80
          ++RRH+R HTGEK + CP C    S 
Sbjct: 1  NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG2462|consensus	279		99.94
KOG2462|consensus	279		99.92
KOG3576|consensus	267		99.7
KOG1074|consensus	958		99.7
KOG3608|consensus	467		99.63
KOG3623|consensus	1007		99.6
KOG3623|consensus	1007		99.58
KOG1074|consensus	958		99.56
KOG3576|consensus	267		99.53
KOG3608|consensus	467		99.39
PHA00733	128	hypothetical protein	99.18
PLN03086	567	PRLI-interacting factor K; Provisional	99.17
PLN03086	567	PRLI-interacting factor K; Provisional	99.09
PHA00733	128	hypothetical protein	99.02
PHA02768	55	hypothetical protein; Provisional	98.89
KOG3993|consensus	500		98.84
PHA02768	55	hypothetical protein; Provisional	98.79
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.65
KOG3993|consensus	500		98.57
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.55
PHA00616	44	hypothetical protein	98.41
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.23
PHA00616	44	hypothetical protein	98.2
PHA00732	79	hypothetical protein	98.06
PHA00732	79	hypothetical protein	98.05
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.04
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.0
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.94
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.87
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.8
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.8
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.71
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.68
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.6
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.47
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.33
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	97.21
smart00355	26	ZnF_C2H2 zinc finger.	97.18
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.99
smart00355	26	ZnF_C2H2 zinc finger.	96.92
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.83
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.82
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.73
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.72
PRK04860	160	hypothetical protein; Provisional	96.32
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	96.14
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.12
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	95.93
PRK04860	160	hypothetical protein; Provisional	95.84
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	95.8
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.46
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.33
KOG2231|consensus	669		95.22
KOG1146|consensus	1406		94.79
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	94.79
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	94.12
KOG1146|consensus	1406		93.87
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	93.52
COG4049	65	Uncharacterized protein containing archaeal-type C	93.42
COG5048	467	FOG: Zn-finger [General function prediction only]	92.98
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	92.56
KOG2785|consensus	390		92.09
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	91.6
KOG2186|consensus	276		90.79
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	90.79
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	90.65
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.02
COG5048	467	FOG: Zn-finger [General function prediction only]	89.82
KOG4173|consensus	253		89.39
smart00531	147	TFIIE Transcription initiation factor IIE.	89.02
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	88.87
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	88.53
KOG2186|consensus	276		88.4
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	88.31
KOG2893|consensus	341		88.02
KOG2482|consensus	423		87.58
COG5236	493	Uncharacterized conserved protein, contains RING Z	87.3
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	87.11
KOG4167|consensus	907		87.0
KOG2231|consensus	669		86.57
KOG2893|consensus	341		86.09
COG4049	65	Uncharacterized protein containing archaeal-type C	85.66
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	85.56
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	85.48
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	85.44
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	84.48
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	83.9
PF08209	33	Sgf11: Sgf11 (transcriptional regulation protein);	83.69
PRK09678	72	DNA-binding transcriptional regulator; Provisional	83.27
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	82.72
COG4957	148	Predicted transcriptional regulator [Transcription	82.7
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	82.65
PRK06266	178	transcription initiation factor E subunit alpha; V	82.55
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	82.48
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	82.2
PF15269	54	zf-C2H2_7: Zinc-finger	81.52
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	81.13
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	80.49

>KOG2462|consensus

Probab=99.94  E-value=6.4e-27  Score=160.02  Aligned_cols=121  Identities=26%  Similarity=0.487  Sum_probs=107.9

Q ss_pred             eeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChH
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQS   82 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~   82 (151)
                      .|+|++||+.+.+.. +|-.|.-+|-.+   ...+-+.|  +.|++.|.+-.+|+.|+++|.  .+.+|.+||+.|.++.
T Consensus       130 r~~c~eCgk~ysT~s-nLsrHkQ~H~~~---~s~ka~~C--~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPW  201 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSS-NLSRHKQTHRSL---DSKKAFSC--KYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPW  201 (279)
T ss_pred             ceecccccccccccc-ccchhhcccccc---cccccccC--CCCCceeeehHHHhhHhhccC--CCcccccccccccchH
Confidence            588999999999999 999994443322   22566889  999999999999999999997  5789999999999999


Q ss_pred             HHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCcccccccCC
Q psy4404          83 ALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLP  131 (151)
Q Consensus        83 ~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~  131 (151)
                      .|+.|+++|+|||||.|+.|++.|..+++|+.||++|.+.+.|+|..|.
T Consensus       202 LLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~  250 (279)
T KOG2462|consen  202 LLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCG  250 (279)
T ss_pred             HhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchh
Confidence            9999999999999999999999999999999999999999999997764

>KOG2462|consensus

Probab=99.92  E-value=6e-26  Score=155.27  Aligned_cols=107  Identities=29%  Similarity=0.541  Sum_probs=99.8

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCCh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ   81 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~   81 (151)
                      +.+.|+.|||.|-+.. +|.+|      .++|+  .++.|  +.||+.|....-|+.|+|+|+|++||.|+.|+++|...
T Consensus       160 ka~~C~~C~K~YvSmp-ALkMH------irTH~--l~c~C--~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR  228 (279)
T KOG2462|consen  160 KAFSCKYCGKVYVSMP-ALKMH------IRTHT--LPCEC--GICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR  228 (279)
T ss_pred             ccccCCCCCceeeehH-HHhhH------hhccC--CCccc--ccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence            4688999999999999 99999      45565  56788  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhh
Q psy4404          82 SALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        82 ~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      ++|..|+.+|.+.++|.|..|++.|...+.|.+|...-
T Consensus       229 SNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  229 SNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             HHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999997643

>KOG3576|consensus

Probab=99.70  E-value=4.5e-18  Score=112.12  Aligned_cols=116  Identities=26%  Similarity=0.474  Sum_probs=102.0

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCCh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ   81 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~   81 (151)
                      .+|.|..|||.|.... .|..|      ++-|...+.+-|  ..||+.|.+.-.|.+|+++|++.+||.|..|+++|...
T Consensus       116 d~ftCrvCgK~F~lQR-mlnrh------~kch~~vkr~lc--t~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr  186 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQR-MLNRH------LKCHSDVKRHLC--TFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR  186 (267)
T ss_pred             CeeeeehhhhhhhHHH-HHHHH------hhhccHHHHHHH--hhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence            3689999999999999 99999      566888888999  88999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-hC----------CCCceeCCcCCccccCHHHHHHHHhhhcCCcccc
Q psy4404          82 SALYNHLKR-HT----------GEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS  126 (151)
Q Consensus        82 ~~l~~h~~~-h~----------~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  126 (151)
                      -.|..|++. |.          .++-|.|..||..-.....+..|++.++..-+..
T Consensus       187 csleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spal  242 (267)
T KOG3576|consen  187 CSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPAL  242 (267)
T ss_pred             ccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHHH
Confidence            999998754 32          2466999999999999999999999998655543

>KOG1074|consensus

Probab=99.70  E-value=3.2e-18  Score=131.86  Aligned_cols=53  Identities=38%  Similarity=0.677  Sum_probs=50.4

Q ss_pred             eeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          69 FHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        69 ~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      -+|.+|.+++.....|+.|.++|+|++||+|.+|++.|..+.+|+.|+-+|.-
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka  658 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKA  658 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccccccc
Confidence            47999999999999999999999999999999999999999999999998863

>KOG3608|consensus

Probab=99.63  E-value=2.4e-16  Score=111.67  Aligned_cols=117  Identities=24%  Similarity=0.625  Sum_probs=100.6

Q ss_pred             CceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCC
Q psy4404           1 MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQ   80 (151)
Q Consensus         1 ~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   80 (151)
                      .|+..||.||..|+++. .|..|++.    .+.....+|.|  ..|.+.|.+...|..|+..|..  .|+|+.|......
T Consensus       205 eKvvACp~Cg~~F~~~t-kl~DH~rR----qt~l~~n~fqC--~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~  275 (467)
T KOG3608|consen  205 EKVVACPHCGELFRTKT-KLFDHLRR----QTELNTNSFQC--AQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSS  275 (467)
T ss_pred             CeEEecchHHHHhcccc-HHHHHHHh----hhhhcCCchHH--HHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCC
Confidence            37889999999999999 99999754    33345678999  8999999999999999998865  5899999999999


Q ss_pred             hHHHHHHHhh-hCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          81 QSALYNHLKR-HTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        81 ~~~l~~h~~~-h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      .+.|..|++. |...+||+|..|++.+...+.|.+|...|. +..|.|
T Consensus       276 ~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C  322 (467)
T KOG3608|consen  276 ASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQC  322 (467)
T ss_pred             hHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceec
Confidence            9999999865 788899999999999999999999998775 666666

>KOG3623|consensus

Probab=99.60  E-value=1.5e-16  Score=121.48  Aligned_cols=109  Identities=28%  Similarity=0.625  Sum_probs=95.7

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCC-CcceeeccCCCCcccCCchHHHHHHHhhcCC-------------C
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDV-SFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE-------------K   67 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~-~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~-------------~   67 (151)
                      ++..|+.|++.++... .|+.|+++     +|.. +.-|.|  ..|..+|..+..|.+|+.+|...             +
T Consensus       209 qlltcpycdrgykrlt-slkeHiky-----rhekne~nfsC--~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lR  280 (1007)
T KOG3623|consen  209 QLLTCPYCDRGYKRLT-SLKEHIKY-----RHEKNEPNFSC--MLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLR  280 (1007)
T ss_pred             hhhcchhHHHHHHHHH-HHHHHHHH-----HHhhCCCCCcc--hhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhc
Confidence            4678999999999999 99999865     3333 345889  99999999999999999988542             3


Q ss_pred             ceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhh
Q psy4404          68 AFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQL  118 (151)
Q Consensus        68 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  118 (151)
                      .|+|.+|+++|..+-.|+.|+++|.|++||.|+.|+++|+....+..||..
T Consensus       281 KFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  281 KFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             cccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            399999999999999999999999999999999999999999999999864

>KOG3623|consensus

Probab=99.58  E-value=3.8e-16  Score=119.24  Aligned_cols=83  Identities=24%  Similarity=0.595  Sum_probs=78.2

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHH
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMK  113 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~  113 (151)
                      +.+..|.|  +.|++.|-..++|.+|.-.|.|.+||+|.+|.++|..+-.|..|.++|.|++||.|..|+++|+....+.
T Consensus       890 te~gmyaC--DqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHSGSYS  967 (1007)
T KOG3623|consen  890 TEDGMYAC--DQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHSGSYS  967 (1007)
T ss_pred             CccccchH--HHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccccchH
Confidence            34557999  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q psy4404         114 RHLQL  118 (151)
Q Consensus       114 ~H~~~  118 (151)
                      +||..
T Consensus       968 QHMNH  972 (1007)
T KOG3623|consen  968 QHMNH  972 (1007)
T ss_pred             hhhcc
Confidence            99863

>KOG1074|consensus

Probab=99.56  E-value=2e-15  Score=116.69  Aligned_cols=59  Identities=29%  Similarity=0.524  Sum_probs=54.6

Q ss_pred             eeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          69 FHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        69 ~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      ..|.+|++.|.+...|..|+++|++++||.|..|++.|..+..|+.||.+|...++..-
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~sr  938 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSR  938 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCcc
Confidence            57999999999999999999999999999999999999999999999999986665543

>KOG3576|consensus

Probab=99.53  E-value=2.2e-15  Score=99.56  Aligned_cols=85  Identities=25%  Similarity=0.573  Sum_probs=80.0

Q ss_pred             CCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHH
Q psy4404          35 VSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKR  114 (151)
Q Consensus        35 ~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~  114 (151)
                      +...|.|  ..|++.|.-+.-|.+|++-|...+.+.|..||+.|...-+|.+|+++|+|.+||+|..|++.|..+-.|..
T Consensus       114 d~d~ftC--rvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsles  191 (267)
T KOG3576|consen  114 DQDSFTC--RVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLES  191 (267)
T ss_pred             CCCeeee--ehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHH
Confidence            3456999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcC
Q psy4404         115 HLQLKHN  121 (151)
Q Consensus       115 H~~~~~~  121 (151)
                      |++..+|
T Consensus       192 hl~kvhg  198 (267)
T KOG3576|consen  192 HLKKVHG  198 (267)
T ss_pred             HHHHHcC
Confidence            9987664

>KOG3608|consensus

Probab=99.39  E-value=4.8e-13  Score=95.15  Aligned_cols=109  Identities=21%  Similarity=0.513  Sum_probs=79.7

Q ss_pred             eeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcc--cccccCCh
Q psy4404           4 VICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQ   81 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~~~~~~~   81 (151)
                      |+||.|+......+ +|..|+     ..+|..++||+|  +.|.+.+.....|++|..+|. +..|.|..  |...+...
T Consensus       264 ykCplCdmtc~~~s-sL~~H~-----r~rHs~dkpfKC--d~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~  334 (467)
T KOG3608|consen  264 YKCPLCDMTCSSAS-SLTTHI-----RYRHSKDKPFKC--DECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTY  334 (467)
T ss_pred             ccccccccCCCChH-HHHHHH-----HhhhccCCCccc--cchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHH
Confidence            45555555555555 555555     356677888888  888888888888888888776 55688876  88888888


Q ss_pred             HHHHHHHhhhC-CC--CceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          82 SALYNHLKRHT-GE--KPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        82 ~~l~~h~~~h~-~~--~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      ..+..|++-+. |.  .+|.|-.|++.|.+-..|..|++..++
T Consensus       335 ~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~  377 (467)
T KOG3608|consen  335 TQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHG  377 (467)
T ss_pred             HHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhc
Confidence            88888876543 43  348888888888888888888776653

>PHA00733 hypothetical protein

Probab=99.18  E-value=3.8e-11  Score=75.84  Aligned_cols=87  Identities=18%  Similarity=0.302  Sum_probs=70.7

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHH--HH---hhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCcc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRH--IR---RHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHK  105 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h--~~---~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~  105 (151)
                      ......+++.|  ..|.+.|.....|..+  ..   .+.+.+||.|+.|++.|.....|..|++.+  +.+|.|..|++.
T Consensus        33 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~  108 (128)
T PHA00733         33 SLTPEQKRLIR--AVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKE  108 (128)
T ss_pred             cCChhhhhHHH--HHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCc
Confidence            33445677889  8899888887777655  11   234477899999999999999999999876  457999999999


Q ss_pred             ccCHHHHHHHHhhhcC
Q psy4404         106 AARKDHMKRHLQLKHN  121 (151)
Q Consensus       106 f~~~~~l~~H~~~~~~  121 (151)
                      |.....|..|+...++
T Consensus       109 F~~~~sL~~H~~~~h~  124 (128)
T PHA00733        109 FRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cCCHHHHHHHHHHhcC
Confidence            9999999999998775

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.17  E-value=1e-10  Score=89.35  Aligned_cols=58  Identities=17%  Similarity=0.500  Sum_probs=29.5

Q ss_pred             CCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccc
Q psy4404          44 QKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKA  106 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f  106 (151)
                      +.|++.|. ...|..|+..++  .++.|+ |+..+ ....|..|+.+|...+++.|..|++.+
T Consensus       457 ~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v  514 (567)
T PLN03086        457 EKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMV  514 (567)
T ss_pred             CCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCcc
Confidence            55555553 344555555543  345555 55433 334455555555555555555555544

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.09  E-value=3e-10  Score=86.87  Aligned_cols=102  Identities=20%  Similarity=0.373  Sum_probs=81.7

Q ss_pred             eeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCC--
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQ--   80 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~--   80 (151)
                      .+.|+.||+.|. .. .|..|+++|+        .++.|  + ||..+ .+..|..|+..|.+.+++.|+.|+..+..  
T Consensus       453 H~~C~~Cgk~f~-~s-~LekH~~~~H--------kpv~C--p-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~  518 (567)
T PLN03086        453 HVHCEKCGQAFQ-QG-EMEKHMKVFH--------EPLQC--P-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGG  518 (567)
T ss_pred             CccCCCCCCccc-hH-HHHHHHHhcC--------CCccC--C-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCc
Confidence            457999999995 45 8999976532        67899  7 99765 56899999999999999999999998852  


Q ss_pred             --------hHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          81 --------QSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        81 --------~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                              ...|..|... .+.+++.|..|++.+..+ .+..|+...|
T Consensus       519 ~~~d~~d~~s~Lt~HE~~-CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h  564 (567)
T PLN03086        519 SAMDVRDRLRGMSEHESI-CGSRTAPCDSCGRSVMLK-EMDIHQIAVH  564 (567)
T ss_pred             cccchhhhhhhHHHHHHh-cCCcceEccccCCeeeeh-hHHHHHHHhh
Confidence                    3478899877 488999999999988765 5667766544

>PHA00733 hypothetical protein

Probab=99.02  E-value=3.3e-10  Score=71.58  Aligned_cols=86  Identities=21%  Similarity=0.306  Sum_probs=67.1

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCCh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ   81 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~   81 (151)
                      +.+.|..|.+.|.+.. .|..+.-... .....+..+|.|  +.|++.|.+..+|..|++.+  ..++.|..|++.|...
T Consensus        39 ~~~~~~~~~~~~~~~~-~l~~~~~l~~-~~~~~~~kPy~C--~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~  112 (128)
T PHA00733         39 KRLIRAVVKTLIYNPQ-LLDESSYLYK-LLTSKAVSPYVC--PLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNT  112 (128)
T ss_pred             hhHHHHHHhhhccChh-hhcchHHHHh-hcccCCCCCccC--CCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCH
Confidence            4578999999998876 6666511111 223345788999  99999999999999999876  3469999999999999


Q ss_pred             HHHHHHHhhhCC
Q psy4404          82 SALYNHLKRHTG   93 (151)
Q Consensus        82 ~~l~~h~~~h~~   93 (151)
                      ..|..|+....+
T Consensus       113 ~sL~~H~~~~h~  124 (128)
T PHA00733        113 DSTLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHHHhcC
Confidence            999999875443

>PHA02768 hypothetical protein; Provisional

Probab=98.89  E-value=7.8e-10  Score=58.62  Aligned_cols=40  Identities=20%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChH
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQS   82 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~   82 (151)
                      |.|  +.||+.|...++|..|++.|+  +++.|..|++.|...+
T Consensus         6 y~C--~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s   45 (55)
T PHA02768          6 YEC--PICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTG   45 (55)
T ss_pred             cCc--chhCCeeccHHHHHHHHHhcC--CcccCCcccceecccc
Confidence            455  555555555555555555554  3455555555554443

>KOG3993|consensus

Probab=98.84  E-value=9.5e-10  Score=80.18  Aligned_cols=121  Identities=17%  Similarity=0.225  Sum_probs=87.5

Q ss_pred             eeeccccccccccCchHHHHHHhhcCCC-------------C--------------CCCCCcceeeccCCCCcccCCchH
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCKNL-------------S--------------RPDVSFKYVCLYQKCSYHTGNSDH   55 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~-------------~--------------~~~~~~~~~C~~~~C~~~f~~~~~   55 (151)
                      -|+|++|+|+|.=.. +|..|.|||+-.             .              ....+..|.|  ..|++.|.....
T Consensus       295 EYrCPEC~KVFsCPA-NLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C--~~C~KkFrRqAY  371 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPA-NLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSC--HTCGKKFRRQAY  371 (500)
T ss_pred             eecCCcccccccCch-hhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeec--HHhhhhhHHHHH
Confidence            589999999999999 999999999820             0              0012236999  999999999999


Q ss_pred             HHHHHHhhcCCCc----------------------------------------------eeCcccccccCChHHHHHHHh
Q psy4404          56 MRRHIRRHTGEKA----------------------------------------------FHCPHCEYRCSQQSALYNHLK   89 (151)
Q Consensus        56 l~~h~~~h~~~~~----------------------------------------------~~C~~C~~~~~~~~~l~~h~~   89 (151)
                      |+.|+.+|+....                                              ..++.++..+.+++.--.+.+
T Consensus       372 LrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~r  451 (500)
T KOG3993|consen  372 LRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGR  451 (500)
T ss_pred             HHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCcccc
Confidence            9999887643100                                              234556655555554444444


Q ss_pred             hhCCCCceeCCcCCccccCHHHHHHHHhhhcCCcccc
Q psy4404          90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS  126 (151)
Q Consensus        90 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  126 (151)
                      ....+..|.|..|-..|.....|.+|+...|..+..+
T Consensus       452 lg~~~q~f~~ky~~atfyss~~ltrhin~~Hpse~rq  488 (500)
T KOG3993|consen  452 LGIAEQGFTCKYCPATFYSSPGLTRHINKCHPSELRQ  488 (500)
T ss_pred             ccchhhccccccchHhhhcCcchHhHhhhcChHHhhh
Confidence            4444567889999999999999999998877554443

>PHA02768 hypothetical protein; Provisional

Probab=98.79  E-value=2e-09  Score=57.08  Aligned_cols=38  Identities=24%  Similarity=0.621  Sum_probs=17.0

Q ss_pred             eeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccC
Q psy4404          69 FHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAAR  108 (151)
Q Consensus        69 ~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~  108 (151)
                      |.|+.|++.|...+.|..|+++|.  ++|+|..|++.|..
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~   43 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLR   43 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecc
Confidence            344444444444444444444444  24444444444443

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.65  E-value=2.5e-08  Score=45.30  Aligned_cols=24  Identities=46%  Similarity=1.025  Sum_probs=15.0

Q ss_pred             HHHHHhhhCCCCceeCCcCCcccc
Q psy4404          84 LYNHLKRHTGEKPFKCTICSHKAA  107 (151)
Q Consensus        84 l~~h~~~h~~~~~~~C~~C~~~f~  107 (151)
                      |..|+++|++++||.|+.|++.|.
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEES
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeC
Confidence            556666666666666666666654

...

>KOG3993|consensus

Probab=98.57  E-value=1.8e-08  Score=73.65  Aligned_cols=108  Identities=20%  Similarity=0.379  Sum_probs=73.1

Q ss_pred             eeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCcee---CcccccccCC
Q psy4404           4 VICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFH---CPHCEYRCSQ   80 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~---C~~C~~~~~~   80 (151)
                      |+|..|-..|..-. .|.+|      .=..+.-.-|+|  ++|++.|+-..||..|++.|......-   -+.=.+....
T Consensus       268 yiCqLCK~kYeD~F-~LAQH------rC~RIV~vEYrC--PEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~  338 (500)
T KOG3993|consen  268 YICQLCKEKYEDAF-ALAQH------RCPRIVHVEYRC--PECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVET  338 (500)
T ss_pred             HHHHHHHHhhhhHH-HHhhc------cCCeeEEeeecC--CcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhh
Confidence            78999999999999 99999      223334445999  999999999999999999986542211   0000001011


Q ss_pred             hHHHHHHH-hh--hCCCCceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          81 QSALYNHL-KR--HTGEKPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        81 ~~~l~~h~-~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      . .+.+.. +.  ...+-.|.|..|++.|.+...|+.|+.+|+.
T Consensus       339 r-ae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  339 R-AEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             h-hhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence            1 111111 11  1223479999999999999999999988874

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.55  E-value=6.4e-08  Score=43.90  Aligned_cols=25  Identities=52%  Similarity=1.079  Sum_probs=18.7

Q ss_pred             HHHHHHHhhcCCCceeCcccccccC
Q psy4404          55 HMRRHIRRHTGEKAFHCPHCEYRCS   79 (151)
Q Consensus        55 ~l~~h~~~h~~~~~~~C~~C~~~~~   79 (151)
                      +|..|+++|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            4677777777777788887777764

...

>PHA00616 hypothetical protein

Probab=98.41  E-value=1.4e-07  Score=47.65  Aligned_cols=32  Identities=19%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      ||+|+.||+.|...+.|..|++.|++++++.+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            46666666666666666677666666665544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.23  E-value=4.5e-07  Score=39.82  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=12.3

Q ss_pred             eeccccccccccCchHHHHHHh
Q psy4404           4 VICQYCEVRLESNSKELLEHCK   25 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~   25 (151)
                      |+|+.||+.|.+.. .|..|++
T Consensus         1 y~C~~C~~~f~~~~-~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKS-NLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHH-HHHHHHH
T ss_pred             CCCCCCCCccCCHH-HHHHHHh
Confidence            45666666665555 6666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00616 hypothetical protein

Probab=98.20  E-value=6e-07  Score=45.42  Aligned_cols=28  Identities=7%  Similarity=0.125  Sum_probs=13.4

Q ss_pred             CCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          44 QKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +.||+.|.+...|..|++.|++++++.|
T Consensus         5 ~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          5 LRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             chhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            4444444444444444444444444443

>PHA00732 hypothetical protein

Probab=98.06  E-value=2.4e-06  Score=49.35  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=11.8

Q ss_pred             eeeccccccccccCchHHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      +|+|+.||+.|.+.. .|+.|+
T Consensus         1 py~C~~Cgk~F~s~s-~Lk~H~   21 (79)
T PHA00732          1 MFKCPICGFTTVTLF-ALKQHA   21 (79)
T ss_pred             CccCCCCCCccCCHH-HHHHHh
Confidence            355555555555555 555553

>PHA00732 hypothetical protein

Probab=98.05  E-value=3.6e-06  Score=48.61  Aligned_cols=48  Identities=27%  Similarity=0.561  Sum_probs=37.7

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHh-hcCCCceeCcccccccCChHHHHHHHhhhCC
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRR-HTGEKAFHCPHCEYRCSQQSALYNHLKRHTG   93 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~-h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~   93 (151)
                      ||.|  +.|++.|.+..+|..|++. |.+   +.|+.|++.|..   +..|.++..+
T Consensus         1 py~C--~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~~---l~~H~~~~~~   49 (79)
T PHA00732          1 MFKC--PICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYRR---LNQHFYSQYD   49 (79)
T ss_pred             CccC--CCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeCC---hhhhhcccCC
Confidence            4778  8999999999999999874 543   579999999874   6677765554

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.04  E-value=3.6e-06  Score=45.11  Aligned_cols=51  Identities=33%  Similarity=0.663  Sum_probs=31.0

Q ss_pred             eeeccccccccccCchHHHHHHhhcCCCCCCCC-CcceeeccCCCCcccCCchHHHHHHHhhc
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCKNLSRPDV-SFKYVCLYQKCSYHTGNSDHMRRHIRRHT   64 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~-~~~~~C~~~~C~~~f~~~~~l~~h~~~h~   64 (151)
                      .|.||.||+.| +.. .|..|+..     .|.. .+.+.|  +.|...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~~~-~~~-~L~~H~~~-----~H~~~~~~v~C--PiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKGF-SES-SLVEHCED-----EHRSESKNVVC--PICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCcc-CHH-HHHHHHHh-----HCcCCCCCccC--CCchhhhh--hHHHHHHHHhc
Confidence            47788888844 445 78877643     2332 235777  77876544  36777766543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.00  E-value=2.9e-06  Score=37.32  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=12.7

Q ss_pred             eeccccccccccCchHHHHHHhh
Q psy4404           4 VICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      |+|+.|++.|.+.. .|..|+++
T Consensus         1 ~~C~~C~~~~~~~~-~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKS-ELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHH-HHHHHHHH
T ss_pred             CCCcCCCCcCCcHH-HHHHHHHh
Confidence            56666666666666 66666544

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.94  E-value=4.2e-06  Score=38.16  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=15.6

Q ss_pred             eeeccccccccccCchHHHHHHhh
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      ||.|..|++.|.+.. .|..|++.
T Consensus         1 ~~~C~~C~~~F~~~~-~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLS-ALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHH-HHHHHHCT
T ss_pred             CCCCCccCCccCChh-HHHHHhHH
Confidence            467777777777777 77777543

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.87  E-value=2.5e-06  Score=60.69  Aligned_cols=72  Identities=19%  Similarity=0.432  Sum_probs=48.7

Q ss_pred             CcceeeccCCCCcccCCchHHHHHHHh-hcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHH
Q psy4404          36 SFKYVCLYQKCSYHTGNSDHMRRHIRR-HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKR  114 (151)
Q Consensus        36 ~~~~~C~~~~C~~~f~~~~~l~~h~~~-h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~  114 (151)
                      ++||+|+.+.|.+.+..+..|+-|+.- |...+...-+.          -..+...-...+||+|++|++++.....|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~----------p~~~~~F~~~~KPYrCevC~KRYKNlNGLKY  416 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPS----------PEKMNIFSAKDKPYRCEVCDKRYKNLNGLKY  416 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCC----------ccccccccccCCceeccccchhhccCcccee
Confidence            489999999999999999999999753 32222111110          0011111234689999999999999888888


Q ss_pred             HHh
Q psy4404         115 HLQ  117 (151)
Q Consensus       115 H~~  117 (151)
                      |+.
T Consensus       417 Hr~  419 (423)
T COG5189         417 HRK  419 (423)
T ss_pred             ccc
Confidence            864

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.80  E-value=2.2e-05  Score=34.25  Aligned_cols=23  Identities=35%  Similarity=0.868  Sum_probs=16.7

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhh
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h   63 (151)
                      |.|  +.|++.|.+...|..|++.|
T Consensus         1 y~C--~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKC--PICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEE--TTTTEEESSHHHHHHHHHHH
T ss_pred             CCC--CCCCCccCCHHHHHHHHhHC
Confidence            567  77777777777777777653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.80  E-value=5.5e-05  Score=40.48  Aligned_cols=49  Identities=39%  Similarity=0.763  Sum_probs=22.9

Q ss_pred             eeCcccccccCChHHHHHHHhh-hCCC-CceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          69 FHCPHCEYRCSQQSALYNHLKR-HTGE-KPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        69 ~~C~~C~~~~~~~~~l~~h~~~-h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      |.||.|++ ..+...|..|... |..+ +.+.|++|...+.  .+|..|+...+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            45555555 3334445555432 3322 2355555554322  35555655443

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.71  E-value=3.1e-05  Score=35.18  Aligned_cols=25  Identities=20%  Similarity=0.559  Sum_probs=19.4

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      ||.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5778888888888888888877665

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.68  E-value=5.2e-05  Score=33.12  Aligned_cols=24  Identities=29%  Similarity=0.837  Sum_probs=15.8

Q ss_pred             eeCCcCCccccCHHHHHHHHhhhc
Q psy4404          97 FKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      |.|+.|++.|.....|..|++.++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567777777777777777777653

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.60  E-value=2.7e-05  Score=55.53  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=20.8

Q ss_pred             ceeeccc--cccccccCchHHHHHH
Q psy4404           2 ILVICQY--CEVRLESNSKELLEHC   24 (151)
Q Consensus         2 ~~~~C~~--C~~~f~~~~~~l~~H~   24 (151)
                      +||+||+  |+|.+++.. .|..|+
T Consensus       348 KpykCpV~gC~K~Yknqn-GLKYH~  371 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQN-GLKYHM  371 (423)
T ss_pred             ceecCCCCCchhhhcccc-chhhhh
Confidence            7999999  999999999 999995

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.47  E-value=8.9e-05  Score=44.49  Aligned_cols=74  Identities=23%  Similarity=0.541  Sum_probs=20.2

Q ss_pred             eccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHH
Q psy4404           5 ICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSAL   84 (151)
Q Consensus         5 ~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l   84 (151)
                      .|..|+..|.+.. .|..||...++......            ..+.....+....+.-. ...+.|..|+..|.+...|
T Consensus         1 ~C~~C~~~f~~~~-~l~~H~~~~H~~~~~~~------------~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l   66 (100)
T PF12756_consen    1 QCLFCDESFSSVD-DLLQHMKKKHGFDIPDQ------------KYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREAL   66 (100)
T ss_dssp             --------------------------------------------------------------SSEEBSSSS-EESSHHHH
T ss_pred             Ccccccccccccc-ccccccccccccccccc------------ccccccccccccccccc-CCCCCCCccCCCCcCHHHH
Confidence            4899999999998 99999754443322211            11112222323322221 2258899999999988889


Q ss_pred             HHHHhhhC
Q psy4404          85 YNHLKRHT   92 (151)
Q Consensus        85 ~~h~~~h~   92 (151)
                      ..|++.+.
T Consensus        67 ~~Hm~~~~   74 (100)
T PF12756_consen   67 QEHMRSKH   74 (100)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHcCcc
Confidence            99987654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.33  E-value=0.00025  Score=42.50  Aligned_cols=74  Identities=20%  Similarity=0.524  Sum_probs=22.5

Q ss_pred             eeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhh
Q psy4404          40 VCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        40 ~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      .|  ..|+..|.+...|..|+...++-..   +. ...+.....+..+..... ...+.|..|+..|.....|..|++.+
T Consensus         1 ~C--~~C~~~f~~~~~l~~H~~~~H~~~~---~~-~~~l~~~~~~~~~~~~~~-~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QC--LFCDESFSSVDDLLQHMKKKHGFDI---PD-QKYLVDPNRLLNYLRKKV-KESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cc--ccccccccccccccccccccccccc---cc-cccccccccccccccccc-CCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            37  7899999999999999876554321   11 111222233333332211 23689999999999999999999976


Q ss_pred             c
Q psy4404         120 H  120 (151)
Q Consensus       120 ~  120 (151)
                      .
T Consensus        74 ~   74 (100)
T PF12756_consen   74 H   74 (100)
T ss_dssp             T
T ss_pred             c
Confidence            4

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=97.21  E-value=0.00018  Score=32.06  Aligned_cols=23  Identities=35%  Similarity=0.713  Sum_probs=17.5

Q ss_pred             eeeccccccccccCchHHHHHHhhc
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTC   27 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~   27 (151)
                      +.+|+.||+.| ... .|..|+..|
T Consensus         2 l~~C~~CgR~F-~~~-~l~~H~~~C   24 (25)
T PF13913_consen    2 LVPCPICGRKF-NPD-RLEKHEKIC   24 (25)
T ss_pred             CCcCCCCCCEE-CHH-HHHHHHHhc
Confidence            46799999999 444 899996554

>smart00355 ZnF_C2H2 zinc finger

Probab=97.18  E-value=0.00016  Score=31.96  Aligned_cols=20  Identities=35%  Similarity=0.582  Sum_probs=10.7

Q ss_pred             eccccccccccCchHHHHHHh
Q psy4404           5 ICQYCEVRLESNSKELLEHCK   25 (151)
Q Consensus         5 ~C~~C~~~f~~~~~~l~~H~~   25 (151)
                      .|+.|++.|.... .|..|++
T Consensus         2 ~C~~C~~~f~~~~-~l~~H~~   21 (26)
T smart00355        2 RCPECGKVFKSKS-ALKEHMR   21 (26)
T ss_pred             CCCCCcchhCCHH-HHHHHHH
Confidence            4555555555555 5555543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.99  E-value=0.00017  Score=32.77  Aligned_cols=21  Identities=29%  Similarity=0.637  Sum_probs=16.1

Q ss_pred             eeccccccccccCchHHHHHHh
Q psy4404           4 VICQYCEVRLESNSKELLEHCK   25 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~   25 (151)
                      |.|..|++.|.+.. .+..|++
T Consensus         2 ~~C~~C~k~f~~~~-~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSEN-QLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHH-HHHCCTT
T ss_pred             CCcccCCCCcCCHH-HHHHHHc
Confidence            67888888888877 8888743

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=96.92  E-value=0.0011  Score=29.14  Aligned_cols=23  Identities=22%  Similarity=0.631  Sum_probs=15.4

Q ss_pred             eeCCcCCccccCHHHHHHHHhhh
Q psy4404          97 FKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      |.|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            45666777777777777776644

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.83  E-value=0.00094  Score=34.69  Aligned_cols=30  Identities=23%  Similarity=0.361  Sum_probs=12.3

Q ss_pred             CcceeeccCCCCcccCCchHHHHHHHhhcCCC
Q psy4404          36 SFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEK   67 (151)
Q Consensus        36 ~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   67 (151)
                      +.|-.|  +.|+..+.+..+|.+|+..+++.+
T Consensus        22 ~~PatC--P~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   22 EQPATC--PICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             S--EE---TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             CCCCCC--CcchhhccchhhHHHHHHHHhccc
Confidence            344445  555555555555555554444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.82  E-value=0.0017  Score=28.44  Aligned_cols=24  Identities=42%  Similarity=0.855  Sum_probs=17.0

Q ss_pred             eeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          97 FKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      |.|+.|+.... ...|..|++.+++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            67888887777 7788888887653

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.73  E-value=0.0042  Score=32.31  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=23.9

Q ss_pred             hcCCCceeCcccccccCChHHHHHHHhhhCCCCc
Q psy4404          63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP   96 (151)
Q Consensus        63 h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~   96 (151)
                      +..+.|..|++|+..+....+|..|+....+.+|
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            3456788999999999999999999988877765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.72  E-value=0.0015  Score=28.79  Aligned_cols=23  Identities=30%  Similarity=0.795  Sum_probs=17.2

Q ss_pred             eeCCcCCccccCHHHHHHHHhhh
Q psy4404          97 FKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      |.|..|+..|.....+..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56777888888888888877654

>PRK04860 hypothetical protein; Provisional

Probab=96.32  E-value=0.0042  Score=40.84  Aligned_cols=36  Identities=22%  Similarity=0.626  Sum_probs=19.3

Q ss_pred             ceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCcccc
Q psy4404          68 AFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAA  107 (151)
Q Consensus        68 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~  107 (151)
                      +|.|. |+.   ....+..|.+++.++++|.|..|+..|.
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~  154 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLV  154 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeE
Confidence            35555 554   3334555555566555566666655443

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=96.14  E-value=0.0041  Score=30.43  Aligned_cols=36  Identities=22%  Similarity=0.471  Sum_probs=25.7

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccC
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTG   51 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~   51 (151)
                      |...||.|+..|.-..            .....+....+|  +.|+..|.
T Consensus         1 M~i~CP~C~~~f~v~~------------~~l~~~~~~vrC--~~C~~~f~   36 (37)
T PF13719_consen    1 MIITCPNCQTRFRVPD------------DKLPAGGRKVRC--PKCGHVFR   36 (37)
T ss_pred             CEEECCCCCceEEcCH------------HHcccCCcEEEC--CCCCcEee
Confidence            5678999999987665            223345557888  88988774

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.12  E-value=0.0053  Score=27.00  Aligned_cols=19  Identities=26%  Similarity=0.658  Sum_probs=9.2

Q ss_pred             eeccccccccccCchHHHHH
Q psy4404           4 VICQYCEVRLESNSKELLEH   23 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H   23 (151)
                      |.|..|++.|.+.. .|+.|
T Consensus         1 ~~C~~C~~~f~s~~-~~~~H   19 (25)
T PF12874_consen    1 FYCDICNKSFSSEN-SLRQH   19 (25)
T ss_dssp             EEETTTTEEESSHH-HHHHH
T ss_pred             CCCCCCCCCcCCHH-HHHHH
Confidence            34445555554444 44444

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=95.93  E-value=0.0076  Score=29.27  Aligned_cols=36  Identities=22%  Similarity=0.471  Sum_probs=25.6

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccC
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTG   51 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~   51 (151)
                      |.+.|+.|+..|.-..            ..........+|  +.|+..|.
T Consensus         1 M~i~Cp~C~~~y~i~d------------~~ip~~g~~v~C--~~C~~~f~   36 (36)
T PF13717_consen    1 MIITCPNCQAKYEIDD------------EKIPPKGRKVRC--SKCGHVFF   36 (36)
T ss_pred             CEEECCCCCCEEeCCH------------HHCCCCCcEEEC--CCCCCEeC
Confidence            5678999999986655            233455566888  88888763

>PRK04860 hypothetical protein; Provisional

Probab=95.84  E-value=0.01  Score=39.06  Aligned_cols=39  Identities=31%  Similarity=0.658  Sum_probs=33.1

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCCh
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ   81 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~   81 (151)
                      -+|.|  . |+.   ....+..|.++|.++++|.|..|+..|...
T Consensus       118 ~~Y~C--~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRC--K-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEc--C-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            35889  7 887   667889999999999999999999887543

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=95.80  E-value=0.0069  Score=29.70  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=23.9

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccC
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTG   51 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~   51 (151)
                      |.+.||.|+..|.-.. +..           ........|  +.|+..|.
T Consensus         1 M~~~CP~C~~~~~v~~-~~~-----------~~~~~~v~C--~~C~~~~~   36 (38)
T TIGR02098         1 MRIQCPNCKTSFRVVD-SQL-----------GANGGKVRC--GKCGHVWY   36 (38)
T ss_pred             CEEECCCCCCEEEeCH-HHc-----------CCCCCEEEC--CCCCCEEE
Confidence            5678999999987765 221           122235778  88988764

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.46  E-value=0.0057  Score=27.56  Aligned_cols=22  Identities=14%  Similarity=0.673  Sum_probs=16.2

Q ss_pred             eeeccCCCCcccCCchHHHHHHHh
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRR   62 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~   62 (151)
                      |.|  ..|++.|.+...+..|+++
T Consensus         2 ~~C--~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYC--DACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBB--TTTTBBBSSHHHHHCCTTS
T ss_pred             CCc--ccCCCCcCCHHHHHHHHcc
Confidence            567  7788888887777777654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.33  E-value=0.021  Score=24.79  Aligned_cols=19  Identities=42%  Similarity=1.031  Sum_probs=8.8

Q ss_pred             CCCCcccCCchHHHHHHHhh
Q psy4404          44 QKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h   63 (151)
                      +.|..... ...|..|++.+
T Consensus         4 ~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    4 PHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCcCC-HHHHHHHHHhh
Confidence            44555444 44555554443

>KOG2231|consensus

Probab=95.22  E-value=0.034  Score=44.32  Aligned_cols=67  Identities=19%  Similarity=0.361  Sum_probs=38.3

Q ss_pred             cCCchHHHHHHHhhcC-CC----ceeCcccccccCChHHHHHHHhhhCCCCceeCCcCC------ccccCHHHHHHHHhh
Q psy4404          50 TGNSDHMRRHIRRHTG-EK----AFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICS------HKAARKDHMKRHLQL  118 (151)
Q Consensus        50 f~~~~~l~~h~~~h~~-~~----~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~------~~f~~~~~l~~H~~~  118 (151)
                      ..+...|..|+..-.. ..    --.|..|...|.....+..|++.+.    |.|..|.      ..|.....|..|.+.
T Consensus       159 ~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~  234 (669)
T KOG2231|consen  159 LYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRK  234 (669)
T ss_pred             hehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhh
Confidence            4444666666554222 11    1357777777777777777766433    3444442      355566667777666


Q ss_pred             hc
Q psy4404         119 KH  120 (151)
Q Consensus       119 ~~  120 (151)
                      .|
T Consensus       235 ~H  236 (669)
T KOG2231|consen  235 GH  236 (669)
T ss_pred             cC
Confidence            55

>KOG1146|consensus

Probab=94.79  E-value=0.0084  Score=50.60  Aligned_cols=58  Identities=17%  Similarity=0.327  Sum_probs=45.2

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCC-------------------CCCCCCCcceeeccCCCCcccCCchHHHHHHHh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKN-------------------LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRR   62 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~-------------------~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~   62 (151)
                      +.|+|+.|+..|+... .|..|||.-+.                   ..---+.++|.|  ..|...+....+|..|+..
T Consensus       464 kt~~cpkc~~~yk~a~-~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C--~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQ-TLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPC--RACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             ccccCCccchhhhhHH-HhhhcccccccccchhHhHhccccccccccccccCCCCcccc--eeeeeeeecchHHHHHHHH
Confidence            4589999999999999 99999887331                   111123457888  8899999999999999865

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=94.79  E-value=0.037  Score=28.35  Aligned_cols=32  Identities=22%  Similarity=0.444  Sum_probs=22.4

Q ss_pred             CceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccC
Q psy4404           1 MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTG   51 (151)
Q Consensus         1 ~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~   51 (151)
                      |+.|+|+.||..|....            ..   .  ...|  +.||..+.
T Consensus         1 ~~~y~C~~CG~~~~~~~------------~~---~--~~~C--p~CG~~~~   32 (46)
T PRK00398          1 MAEYKCARCGREVELDE------------YG---T--GVRC--PYCGYRIL   32 (46)
T ss_pred             CCEEECCCCCCEEEECC------------CC---C--ceEC--CCCCCeEE
Confidence            67899999999886655            11   1  4678  77886543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=94.12  E-value=0.028  Score=26.75  Aligned_cols=21  Identities=19%  Similarity=0.458  Sum_probs=13.7

Q ss_pred             eeeccccccccccCchHHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      .|.|..|++.|.+.. .+..|+
T Consensus         3 ~~~C~~C~~~~~~~~-~~~~H~   23 (35)
T smart00451        3 GFYCKLCNVTFTDEI-SVEAHL   23 (35)
T ss_pred             CeEccccCCccCCHH-HHHHHH
Confidence            456777777776555 666664

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG1146|consensus

Probab=93.87  E-value=0.017  Score=48.93  Aligned_cols=103  Identities=20%  Similarity=0.303  Sum_probs=63.3

Q ss_pred             ccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHH
Q psy4404           6 CQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALY   85 (151)
Q Consensus         6 C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~   85 (151)
                      |..|+..|.+.. .+..|+     ...+.-.+-|.|  +.|+..|+....|-.||++.+.+...  ..|..+- .-..+.
T Consensus       439 ~~~~e~~~~s~r-~~~~~t-----~~L~S~~kt~~c--pkc~~~yk~a~~L~vhmRskhp~~~~--~~c~~gq-~~~~~a  507 (1406)
T KOG1146|consen  439 LTKAEPLLESKR-SLEGQT-----VVLHSFFKTLKC--PKCNWHYKLAQTLGVHMRSKHPESQS--AYCKAGQ-NHPRLA  507 (1406)
T ss_pred             ccchhhhhhhhc-ccccce-----eeeecccccccC--CccchhhhhHHHhhhcccccccccch--hHhHhcc-cccccc
Confidence            455566666655 666664     234444577889  88999999999999998874433211  2222111 101111


Q ss_pred             HHHhhhCCCCceeCCcCCccccCHHHHHHHHhhh
Q psy4404          86 NHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        86 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      .-...-.+.++|.|..|...+.....|.+|++.-
T Consensus       508 rg~~~~~~~~p~~C~~C~~stttng~LsihlqS~  541 (1406)
T KOG1146|consen  508 RGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSD  541 (1406)
T ss_pred             ccccccCCCCcccceeeeeeeecchHHHHHHHHH
Confidence            1111123456899999999999999999998853

>smart00451 ZnF_U1 U1-like zinc finger

Probab=93.52  E-value=0.092  Score=24.87  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=19.0

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhh
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      +|.|..|+..|.....+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            577888888888888888887653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.42  E-value=0.033  Score=29.49  Aligned_cols=23  Identities=13%  Similarity=0.491  Sum_probs=17.6

Q ss_pred             ceeeccccccccccCchHHHHHHh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCK   25 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~   25 (151)
                      ..+.||.||..|+... ++..|+.
T Consensus        16 ~~lrCPRC~~~FR~~K-~Y~RHVN   38 (65)
T COG4049          16 EFLRCPRCGMVFRRRK-DYIRHVN   38 (65)
T ss_pred             eeeeCCchhHHHHHhH-HHHHHhh
Confidence            3577888888888777 8888853

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=92.98  E-value=0.045  Score=40.99  Aligned_cols=62  Identities=23%  Similarity=0.389  Sum_probs=49.9

Q ss_pred             eeeccccccccccCchHHHHHHhhcCCCC--CCCCC--cceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCKNLS--RPDVS--FKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~~--~~~~~--~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      ++.|..|...|.... .|..|      ..  .|+++  +++.|++..|++.|.....+..|...|....+..+
T Consensus       289 ~~~~~~~~~~~s~~~-~l~~~------~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T COG5048         289 PIKSKQCNISFSRSS-PLTRH------LRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE  354 (467)
T ss_pred             CCCCccccCCccccc-ccccc------ccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccc
Confidence            577889999999888 99999      55  68888  89999433799999999999999888876554433

>TIGR00622 ssl1 transcription factor ssl1

Probab=92.56  E-value=0.22  Score=30.68  Aligned_cols=24  Identities=17%  Similarity=0.376  Sum_probs=12.8

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhh
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      .|.|+.|...|-..-+.-.|...|
T Consensus        81 ~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        81 RYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ceeCCCCCCccccccchhhhhhcc
Confidence            455655555555555555554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2785|consensus

Probab=92.09  E-value=0.39  Score=35.74  Aligned_cols=51  Identities=16%  Similarity=0.436  Sum_probs=40.4

Q ss_pred             ceeCcccccccCChHHHHHHHhhhCC-----------------------CCceeCCcCC---ccccCHHHHHHHHhh
Q psy4404          68 AFHCPHCEYRCSQQSALYNHLKRHTG-----------------------EKPFKCTICS---HKAARKDHMKRHLQL  118 (151)
Q Consensus        68 ~~~C~~C~~~~~~~~~l~~h~~~h~~-----------------------~~~~~C~~C~---~~f~~~~~l~~H~~~  118 (151)
                      |-.|..|+..+.....-..||..++|                       ..-+.|..|+   +.|.+....+.||..
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            35688898888888888888876654                       2346788888   899999999999874

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=91.60  E-value=0.11  Score=28.01  Aligned_cols=33  Identities=18%  Similarity=0.505  Sum_probs=18.7

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccccc
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEY   76 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~   76 (151)
                      ..|.|  +.||..--.+..-     --.-..+|.|+.||.
T Consensus        26 v~F~C--PnCGe~~I~Rc~~-----CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          26 VKFPC--PNCGEVEIYRCAK-----CRKLGNPYRCPKCGF   58 (61)
T ss_pred             eEeeC--CCCCceeeehhhh-----HHHcCCceECCCcCc
Confidence            45778  7788554444421     111235688888864

>KOG2186|consensus

Probab=90.79  E-value=0.27  Score=34.56  Aligned_cols=49  Identities=18%  Similarity=0.545  Sum_probs=36.5

Q ss_pred             CceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHH
Q psy4404           1 MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIR   61 (151)
Q Consensus         1 ~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~   61 (151)
                      |.-|.|..||....-.  .+..|+..|.+       .-|.|  -+|++.|.. .+...|..
T Consensus         1 MV~FtCnvCgEsvKKp--~vekH~srCrn-------~~fSC--IDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    1 MVFFTCNVCGESVKKP--QVEKHMSRCRN-------AYFSC--IDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             CeEEehhhhhhhcccc--chHHHHHhccC-------CeeEE--eeccccccc-chhhhhhh
Confidence            5678899999998663  68889654433       45889  999999999 44556644

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=90.79  E-value=0.18  Score=23.81  Aligned_cols=8  Identities=38%  Similarity=1.501  Sum_probs=4.2

Q ss_pred             ceeCCcCC
Q psy4404          96 PFKCTICS  103 (151)
Q Consensus        96 ~~~C~~C~  103 (151)
                      ++.|+.|+
T Consensus        17 ~~~CP~Cg   24 (33)
T cd00350          17 PWVCPVCG   24 (33)
T ss_pred             CCcCcCCC
Confidence            44555554

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=90.65  E-value=1.2  Score=27.24  Aligned_cols=23  Identities=26%  Similarity=0.641  Sum_probs=18.5

Q ss_pred             ceeeccccccccccCchHHHHHHhh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      ++.+|..|+-.... + ++..|++.
T Consensus        10 ~vlIC~~C~~av~~-~-~v~~HL~~   32 (109)
T PF12013_consen   10 RVLICRQCQYAVQP-S-EVESHLRK   32 (109)
T ss_pred             CEEEeCCCCcccCc-h-HHHHHHHH
Confidence            57889999988766 5 89999774

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.02  E-value=0.12  Score=35.83  Aligned_cols=49  Identities=12%  Similarity=0.310  Sum_probs=27.8

Q ss_pred             ceeeccccccccccCchHHHHHHhh---cCCCCCC-CCCcc-----eeeccCCCCcccCCc
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKT---CKNLSRP-DVSFK-----YVCLYQKCSYHTGNS   53 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~---~~~~~~~-~~~~~-----~~C~~~~C~~~f~~~   53 (151)
                      +-+.||.|++.|.++. -+....+.   ..+...+ .+..|     ..|  +.||..+...
T Consensus         4 k~~~CPvC~~~F~~~~-vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vC--P~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKK-VRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVC--PHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeE-EEcCCceEeeecCCCccccCCCCCeeeeEEEC--CCCCCccccc
Confidence            5688999999999876 33333111   1111122 12233     347  8888876654

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=89.82  E-value=0.093  Score=39.30  Aligned_cols=60  Identities=33%  Similarity=0.686  Sum_probs=40.8

Q ss_pred             ceeCcccccccCChHHHHHHHh--hhCCC--CceeCC--cCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          68 AFHCPHCEYRCSQQSALYNHLK--RHTGE--KPFKCT--ICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        68 ~~~C~~C~~~~~~~~~l~~h~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      ++.|..|...|.....+..|.+  .|.++  +|+.|+  .|++.|.+...+..|..+|.+..+..+
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKE  354 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCcccc
Confidence            4566667777777777777776  67777  677777  577777777777777777665554444

>KOG4173|consensus

Probab=89.39  E-value=0.14  Score=34.87  Aligned_cols=80  Identities=20%  Similarity=0.456  Sum_probs=60.2

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhC----------CCCceeCCc--CCcc
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHT----------GEKPFKCTI--CSHK  105 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~----------~~~~~~C~~--C~~~  105 (151)
                      .+.|+.-.|...|...+....|...-++.   .|.+|.+.|++.-.|-.|..-..          |.-.|.|.+  |+..
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~K  155 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEK  155 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhh
Confidence            36787778999999988888887665442   69999999999888877764322          333488855  9999


Q ss_pred             ccCHHHHHHHHhhhc
Q psy4404         106 AARKDHMKRHLQLKH  120 (151)
Q Consensus       106 f~~~~~l~~H~~~~~  120 (151)
                      |.+......|+-..+
T Consensus       156 FkT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  156 FKTSRDRKDHMIRMH  170 (253)
T ss_pred             hhhhhhhhhHHHHhc
Confidence            999888888876543

>smart00531 TFIIE Transcription initiation factor IIE

Probab=89.02  E-value=0.35  Score=31.35  Aligned_cols=41  Identities=17%  Similarity=0.400  Sum_probs=24.9

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCC
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQ   80 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   80 (151)
                      .....|.|  +.|+..|..-..+..-   .. ...|.|+.|+.....
T Consensus        95 ~~~~~Y~C--p~C~~~y~~~ea~~~~---d~-~~~f~Cp~Cg~~l~~  135 (147)
T smart00531       95 TNNAYYKC--PNCQSKYTFLEANQLL---DM-DGTFTCPRCGEELEE  135 (147)
T ss_pred             cCCcEEEC--cCCCCEeeHHHHHHhc---CC-CCcEECCCCCCEEEE
Confidence            34556888  7788887765544321   11 234888888876643

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=88.87  E-value=0.43  Score=29.28  Aligned_cols=30  Identities=17%  Similarity=0.503  Sum_probs=20.6

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCCh
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ   81 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~   81 (151)
                      ..|  +.||+.|..-           ++.|..||.||..|...
T Consensus        10 R~C--p~CG~kFYDL-----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTC--PSCGAKFYDL-----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccC--CCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence            457  7788887773           24567788888777655

The function of members of this family is unknown.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=88.53  E-value=0.33  Score=24.31  Aligned_cols=14  Identities=21%  Similarity=0.427  Sum_probs=8.6

Q ss_pred             eeccccccccccCc
Q psy4404           4 VICQYCEVRLESNS   17 (151)
Q Consensus         4 ~~C~~C~~~f~~~~   17 (151)
                      |+|..||..|....
T Consensus         6 y~C~~Cg~~fe~~~   19 (42)
T PF09723_consen    6 YRCEECGHEFEVLQ   19 (42)
T ss_pred             EEeCCCCCEEEEEE
Confidence            56777776665443

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>KOG2186|consensus

Probab=88.40  E-value=0.31  Score=34.24  Aligned_cols=49  Identities=22%  Similarity=0.491  Sum_probs=31.4

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhC
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHT   92 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~   92 (151)
                      |.|  ..||-...- ..+.+|+..-++ .-|.|..|+..|.. ..+..|...=+
T Consensus         4 FtC--nvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kCIT   52 (276)
T KOG2186|consen    4 FTC--NVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKCIT   52 (276)
T ss_pred             Eeh--hhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhhhcc
Confidence            667  777776655 346667766665 45777778887777 44566655433

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=88.31  E-value=0.31  Score=21.31  Aligned_cols=10  Identities=20%  Similarity=0.634  Sum_probs=7.0

Q ss_pred             ceeecccccc
Q psy4404           2 ILVICQYCEV   11 (151)
Q Consensus         2 ~~~~C~~C~~   11 (151)
                      ..|+||.||+
T Consensus        15 v~f~CPnCG~   24 (24)
T PF07754_consen   15 VPFPCPNCGF   24 (24)
T ss_pred             ceEeCCCCCC
Confidence            4677888774

It is likely to bind zinc via its four well-conserved cysteine residues.

>KOG2893|consensus

Probab=88.02  E-value=0.14  Score=35.63  Aligned_cols=41  Identities=20%  Similarity=0.535  Sum_probs=20.0

Q ss_pred             ccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHH
Q psy4404           6 CQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRH   59 (151)
Q Consensus         6 C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h   59 (151)
                      |=.|++.|..+. -|.+|          ...+.|+|  ..|.+.+.+--.|..|
T Consensus        13 cwycnrefddek-iliqh----------qkakhfkc--hichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEK-ILIQH----------QKAKHFKC--HICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhh-hhhhh----------hhhcccee--eeehhhhccCCCceee
Confidence            444555555554 55555          12234555  5555554444444444

>KOG2482|consensus

Probab=87.58  E-value=1.5  Score=32.35  Aligned_cols=51  Identities=18%  Similarity=0.327  Sum_probs=37.0

Q ss_pred             eeCcccccccCChHHHHHHHhhhCC---------------------------CCceeCCcCCccccCHHHHHHHHhhh
Q psy4404          69 FHCPHCEYRCSQQSALYNHLKRHTG---------------------------EKPFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        69 ~~C~~C~~~~~~~~~l~~h~~~h~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      ..|-.|.........|..||..-..                           ...-.|-.|...|-....|..||-.+
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            5788898888888889999864221                           01135777888888888888887643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.30  E-value=0.38  Score=35.47  Aligned_cols=27  Identities=22%  Similarity=0.653  Sum_probs=15.7

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      |.||...|...-.....|..|.++-++
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~  178 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHG  178 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcC
Confidence            666555555555555666666665443

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=87.11  E-value=0.49  Score=23.22  Aligned_cols=15  Identities=20%  Similarity=0.321  Sum_probs=9.3

Q ss_pred             eeeccccccccccCc
Q psy4404           3 LVICQYCEVRLESNS   17 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~   17 (151)
                      .|.|+.||..|.-..
T Consensus         5 ~y~C~~Cg~~fe~~~   19 (41)
T smart00834        5 EYRCEDCGHTFEVLQ   19 (41)
T ss_pred             EEEcCCCCCEEEEEE
Confidence            366777777765433

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>KOG4167|consensus

Probab=87.00  E-value=0.14  Score=41.22  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=20.2

Q ss_pred             eeeccccccccccCchHHHHHHhhcC
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCK   28 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~   28 (151)
                      .|.|.+|||+|.... .+..||++|.
T Consensus       792 iFpCreC~kvF~KiK-SrNAHMK~Hr  816 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIK-SRNAHMKTHR  816 (907)
T ss_pred             eeehHHHHHHHHHHh-hhhHHHHHHH
Confidence            588999999987777 8889987654

>KOG2231|consensus

Probab=86.57  E-value=1.5  Score=35.44  Aligned_cols=69  Identities=22%  Similarity=0.434  Sum_probs=44.9

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc------ccccCChHHHHHHHhhhCCCCceeCC--cCC-ccccCH
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC------EYRCSQQSALYNHLKRHTGEKPFKCT--ICS-HKAARK  109 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C------~~~~~~~~~l~~h~~~h~~~~~~~C~--~C~-~~f~~~  109 (151)
                      -.|  ..|...|.....|..|++.++    +.|..|      +..|..-..|..|.+    +..|.|.  .|. +.|...
T Consensus       183 p~C--~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR----~~HflCE~~~C~~~~f~~~  252 (669)
T KOG2231|consen  183 PLC--KFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFR----KGHFLCEEEFCRTKKFYVA  252 (669)
T ss_pred             ccc--hhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhh----hcCccccccccccceeeeh
Confidence            347  889999999999999998765    345555      455566667777766    4557777  465 234333


Q ss_pred             HHHHHHHh
Q psy4404         110 DHMKRHLQ  117 (151)
Q Consensus       110 ~~l~~H~~  117 (151)
                      ..+..+++
T Consensus       253 ~~~ei~lk  260 (669)
T KOG2231|consen  253 FELEIELK  260 (669)
T ss_pred             hHHHHHHH
Confidence            34444444

>KOG2893|consensus

Probab=86.09  E-value=0.19  Score=35.01  Aligned_cols=39  Identities=18%  Similarity=0.384  Sum_probs=19.4

Q ss_pred             CCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHH
Q psy4404          45 KCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNH   87 (151)
Q Consensus        45 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h   87 (151)
                      .|.+-|.+..-|.+|++..    -|+|.+|.+.+.+-..|..|
T Consensus        15 ycnrefddekiliqhqkak----hfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   15 YCNREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             ecccccchhhhhhhhhhhc----cceeeeehhhhccCCCceee
Confidence            5566666655555554432    25555555444444334433

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=85.66  E-value=0.56  Score=24.92  Aligned_cols=29  Identities=28%  Similarity=0.577  Sum_probs=18.3

Q ss_pred             CCCCceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          92 TGEKPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        92 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      .|+.-+.|+-|+..|....++.+|....+
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            34444667777777777777777766544

>TIGR00622 ssl1 transcription factor ssl1

Probab=85.56  E-value=1.3  Score=27.40  Aligned_cols=83  Identities=13%  Similarity=0.193  Sum_probs=51.0

Q ss_pred             eeeccccccccccCchHHHHHHhhcCCC----C--C--CCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCKNL----S--R--PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~----~--~--~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      |..|+.||.+.-+.. +|..-  +|+=.    .  .  ......-.|  -.|...|........-  .-.....|.|+.|
T Consensus        15 P~~CpiCgLtLVss~-HLARS--yHHLfPl~~f~ev~~~~~~~~~~C--~~C~~~f~~~~~~~~~--~~~~~~~y~C~~C   87 (112)
T TIGR00622        15 PVECPICGLTLILST-HLARS--YHHLFPLKAFQEIPLEEYNGSRFC--FGCQGPFPKPPVSPFD--ELKDSHRYVCAVC   87 (112)
T ss_pred             CCcCCcCCCEEeccc-hHHHh--hhccCCCcccccccccccCCCCcc--cCcCCCCCCccccccc--ccccccceeCCCC
Confidence            567999999988877 77643  11100    0  0  001112348  8899999875321100  0122346999999


Q ss_pred             ccccCChHHHHHHHhhhC
Q psy4404          75 EYRCSQQSALYNHLKRHT   92 (151)
Q Consensus        75 ~~~~~~~~~l~~h~~~h~   92 (151)
                      ...|...-+.-.|..+|.
T Consensus        88 ~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        88 KNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             CCccccccchhhhhhccC
Confidence            999999988888876654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=85.48  E-value=0.83  Score=24.30  Aligned_cols=32  Identities=16%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCccc
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHT   50 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f   50 (151)
                      |.|+||.||..+.-..            .  .. .....|  +.||..+
T Consensus         1 ~~~~CP~CG~~iev~~------------~--~~-GeiV~C--p~CGael   32 (54)
T TIGR01206         1 MQFECPDCGAEIELEN------------P--EL-GELVIC--DECGAEL   32 (54)
T ss_pred             CccCCCCCCCEEecCC------------C--cc-CCEEeC--CCCCCEE
Confidence            3578888888774433            1  11 234678  7888664

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=85.44  E-value=0.42  Score=23.67  Aligned_cols=39  Identities=21%  Similarity=0.384  Sum_probs=20.2

Q ss_pred             eeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccC
Q psy4404           4 VICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTG   51 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~   51 (151)
                      ++|+.||..-..   .++.+.+    ......-..|.|  ..|+..|.
T Consensus         1 ~~Cp~C~~~~a~---~~q~Q~R----saDE~mT~fy~C--~~C~~~w~   39 (40)
T smart00440        1 APCPKCGNREAT---FFQLQTR----SADEPMTVFYVC--TKCGHRWR   39 (40)
T ss_pred             CcCCCCCCCeEE---EEEEccc----CCCCCCeEEEEe--CCCCCEeC
Confidence            478889855322   2233311    111111235889  88998764

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=84.48  E-value=0.58  Score=25.25  Aligned_cols=34  Identities=21%  Similarity=0.653  Sum_probs=19.7

Q ss_pred             CcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccccc
Q psy4404          36 SFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEY   76 (151)
Q Consensus        36 ~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~   76 (151)
                      ...|.|  +.||...-.+-.-   -+.  ...+|.|+.||.
T Consensus        23 ~~~F~C--PnCG~~~I~RC~~---CRk--~~~~Y~CP~CGF   56 (59)
T PRK14890         23 AVKFLC--PNCGEVIIYRCEK---CRK--QSNPYTCPKCGF   56 (59)
T ss_pred             cCEeeC--CCCCCeeEeechh---HHh--cCCceECCCCCC
Confidence            345888  8888773333221   111  135789998874

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=83.90  E-value=0.7  Score=29.44  Aligned_cols=23  Identities=30%  Similarity=0.650  Sum_probs=12.2

Q ss_pred             eeccccccccccCchHHHHHHhhcCCC
Q psy4404           4 VICQYCEVRLESNSKELLEHCKTCKNL   30 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~~~~~   30 (151)
                      .+|-+||+.|+    .|..|.+.|+++
T Consensus        73 i~clecGk~~k----~LkrHL~~~~gl   95 (132)
T PF05443_consen   73 IICLECGKKFK----TLKRHLRTHHGL   95 (132)
T ss_dssp             EE-TBT--EES----BHHHHHHHTT-S
T ss_pred             eEEccCCcccc----hHHHHHHHccCC
Confidence            56888888884    456776555443

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast)

Probab=83.69  E-value=1.5  Score=20.77  Aligned_cols=26  Identities=19%  Similarity=0.460  Sum_probs=17.8

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCC
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKN   29 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~   29 (151)
                      ..|.|+.|++.+..  .-+..|+..|-+
T Consensus         3 ~~~~C~nC~R~v~a--~RfA~HLekCmg   28 (33)
T PF08209_consen    3 PYVECPNCGRPVAA--SRFAPHLEKCMG   28 (33)
T ss_dssp             -EEE-TTTSSEEEG--GGHHHHHHHHTC
T ss_pred             CeEECCCCcCCcch--hhhHHHHHHHHc
Confidence            46889999999866  358888666544

The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=83.27  E-value=0.46  Score=26.88  Aligned_cols=44  Identities=11%  Similarity=0.163  Sum_probs=27.8

Q ss_pred             eeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHH
Q psy4404           4 VICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHM   56 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l   56 (151)
                      +.||.||....-+. .-...        ....+.-+.|.-..||.+|.....+
T Consensus         2 m~CP~Cg~~a~irt-Sr~~s--------~~~~~~Y~qC~N~eCg~tF~t~es~   45 (72)
T PRK09678          2 FHCPLCQHAAHART-SRYIT--------DTTKERYHQCQNVNCSATFITYESV   45 (72)
T ss_pred             ccCCCCCCccEEEE-ChhcC--------hhhheeeeecCCCCCCCEEEEEEEE
Confidence            57999998875555 33333        1244556778333899988876543

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.72  E-value=0.25  Score=24.36  Aligned_cols=38  Identities=16%  Similarity=0.357  Sum_probs=17.2

Q ss_pred             eeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCccc
Q psy4404           4 VICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHT   50 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f   50 (151)
                      ++||.||..-...   ++.+.+    ......-..|.|  ..|+..|
T Consensus         1 ~~Cp~Cg~~~a~~---~~~Q~r----saDE~~T~fy~C--~~C~~~w   38 (39)
T PF01096_consen    1 IKCPKCGHNEAVF---FQIQTR----SADEPMTLFYVC--CNCGHRW   38 (39)
T ss_dssp             S--SSS-SSEEEE---EEESSS----SSSSSSEEEEEE--SSSTEEE
T ss_pred             CCCcCCCCCeEEE---EEeecc----CCCCCCeEEEEe--CCCCCee
Confidence            4688888763322   222210    111111234888  8898776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>COG4957 Predicted transcriptional regulator [Transcription]

Probab=82.70  E-value=1.2  Score=28.37  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=17.0

Q ss_pred             eeccccccccccCchHHHHHHhhcCCC
Q psy4404           4 VICQYCEVRLESNSKELLEHCKTCKNL   30 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~~~~~   30 (151)
                      ++|.++|+.|    |.|..|..+|.++
T Consensus        77 IicLEDGkkf----KSLKRHL~t~~gm   99 (148)
T COG4957          77 IICLEDGKKF----KSLKRHLTTHYGL   99 (148)
T ss_pred             EEEeccCcch----HHHHHHHhcccCC
Confidence            5799999999    6788895554443

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=82.65  E-value=0.48  Score=31.18  Aligned_cols=34  Identities=18%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             CCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccC
Q psy4404          35 VSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCS   79 (151)
Q Consensus        35 ~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   79 (151)
                      ....|.|  +.|+..|..-.++..-         |.|+.||..+.
T Consensus       106 ~~~~Y~C--p~c~~r~tf~eA~~~~---------F~Cp~Cg~~L~  139 (158)
T TIGR00373       106 NNMFFIC--PNMCVRFTFNEAMELN---------FTCPRCGAMLD  139 (158)
T ss_pred             CCCeEEC--CCCCcEeeHHHHHHcC---------CcCCCCCCEee
Confidence            3445667  6677666666665432         56666666543

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=82.55  E-value=0.53  Score=31.62  Aligned_cols=32  Identities=22%  Similarity=0.596  Sum_probs=16.7

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccC
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCS   79 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   79 (151)
                      ..|.|  +.|+..|..-.++..    .     |.|+.||..+.
T Consensus       116 ~~Y~C--p~C~~rytf~eA~~~----~-----F~Cp~Cg~~L~  147 (178)
T PRK06266        116 MFFFC--PNCHIRFTFDEAMEY----G-----FRCPQCGEMLE  147 (178)
T ss_pred             CEEEC--CCCCcEEeHHHHhhc----C-----CcCCCCCCCCe
Confidence            44556  556666555555432    1     45666655543

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=82.48  E-value=0.93  Score=23.60  Aligned_cols=12  Identities=33%  Similarity=0.661  Sum_probs=7.3

Q ss_pred             eecccccccccc
Q psy4404           4 VICQYCEVRLES   15 (151)
Q Consensus         4 ~~C~~C~~~f~~   15 (151)
                      |+|+.||..|..
T Consensus         6 y~C~~Cg~~fe~   17 (52)
T TIGR02605         6 YRCTACGHRFEV   17 (52)
T ss_pred             EEeCCCCCEeEE
Confidence            556666666643

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=82.20  E-value=0.77  Score=20.40  Aligned_cols=19  Identities=21%  Similarity=0.412  Sum_probs=12.5

Q ss_pred             eeccccccccccCchHHHHHH
Q psy4404           4 VICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      ..||.|++.+ ... .+..|.
T Consensus         2 v~CPiC~~~v-~~~-~in~HL   20 (26)
T smart00734        2 VQCPVCFREV-PEN-LINSHL   20 (26)
T ss_pred             CcCCCCcCcc-cHH-HHHHHH
Confidence            4678888777 334 677774

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>PF15269 zf-C2H2_7: Zinc-finger

Probab=81.52  E-value=0.85  Score=23.07  Aligned_cols=22  Identities=27%  Similarity=0.473  Sum_probs=17.6

Q ss_pred             eeccccccccccCchHHHHHHhh
Q psy4404           4 VICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      |+|.+|..+-..++ .|..||+.
T Consensus        21 ykcfqcpftc~~ks-hl~nhmky   42 (54)
T PF15269_consen   21 YKCFQCPFTCNEKS-HLFNHMKY   42 (54)
T ss_pred             ceeecCCcccchHH-HHHHHHHH
Confidence            56888888887777 89999764

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=81.13  E-value=1.3  Score=27.89  Aligned_cols=33  Identities=12%  Similarity=0.157  Sum_probs=22.9

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHH
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSA   83 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~   83 (151)
                      +..|  +.||+.|..-           ++.|..|+.||..|.....
T Consensus         9 Kr~C--p~cg~kFYDL-----------nk~p~vcP~cg~~~~~~~~   41 (129)
T TIGR02300         9 KRIC--PNTGSKFYDL-----------NRRPAVSPYTGEQFPPEEA   41 (129)
T ss_pred             cccC--CCcCcccccc-----------CCCCccCCCcCCccCcchh
Confidence            3567  8888888773           3457788888888766543

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=80.49  E-value=0.75  Score=23.88  Aligned_cols=13  Identities=23%  Similarity=0.544  Sum_probs=11.0

Q ss_pred             Cceeecccccccc
Q psy4404           1 MILVICQYCEVRL   13 (151)
Q Consensus         1 ~~~~~C~~C~~~f   13 (151)
                      ++.|+|..||+.|
T Consensus         4 ~~~Y~C~~Cg~~~   16 (49)
T COG1996           4 MMEYKCARCGREV   16 (49)
T ss_pred             eEEEEhhhcCCee
Confidence            4788999999988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	151
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		6e-14
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		7e-14
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		1e-13
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		2e-13
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		4e-13
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		5e-13
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-13
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		1e-11
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-11
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-11
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		4e-11
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		1e-10
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		9e-10
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		9e-10
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		2e-09
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		4e-08
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		1e-07
2rpc_A	155	Solution Structure Of The Tandem Zf-C2h2 Domains Fr		5e-07
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		1e-06
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		9e-06
1tf6_A	190	Co-crystal Structure Of Xenopus Tfiiia Zinc Finger		1e-05
1tf3_A	92	Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures		2e-05
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		1e-04
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		2e-04
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		2e-04
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		2e-04
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		3e-04
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		3e-04

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 44/80 (55%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 44/80 (55%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 4   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 64  CDICGRKFARSDERKRHTKI 83

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 44/80 (55%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 45/80 (56%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C     +S ++ RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 5   YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 43/80 (53%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      S  + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 43/80 (53%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      S  + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 5   YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 43/80 (53%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      S  + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 99  CTICSHKAARKDHMKRHLQL 118
           C IC  K AR D  KRH ++
Sbjct: 65  CDICGRKFARSDERKRHTKI 84

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 31  SRPDVSFKYV--CLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYN 86
           S PD+  + +  C Y  C+     S H++ H+R HTGEK + C    C++R ++   L  
Sbjct: 6   SGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTR 65
Query: 87  HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHN 121
           H ++HTG KPF+C +C+   +R DH+  H++   N
Sbjct: 66  HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 42/76 (55%)
Query: 46  CSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHK 105
           C      S ++++H R HTGEK + CP C    SQ S L  H + HTGEKP+KC  C   
Sbjct: 10  CGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKS 69
Query: 106 AARKDHMKRHLQLKHN 121
            +R DH+ RH +   N
Sbjct: 70  FSRSDHLSRHQRTHQN 85

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C        ++  HIR HTG+K F C  C    SQQ++L  H++ HTGEKPF 
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 99  CTICSHKAA----RKDHMKRHLQLK 119
           C IC  K A    R  H K HL+ K
Sbjct: 65  CDICGRKFATLHTRTRHTKIHLRQK 89

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKP 96
           ++C Y  C+       H++ H R+HTGEK + C    CE R S+   L  H +RHTG KP
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 97  FKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLP 131
           F+C  C  K +R DH+K H +  H  +     + P
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWP 100

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C        ++  HIR HTG+K F C  C    SQ + L  H++ HTGEKPF 
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 99  CTICSHKAA----RKDHMKRHLQLK 119
           C IC  K A    R  H K HL+ K
Sbjct: 65  CDICGRKFATLHTRDRHTKIHLRQK 89

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKP 96
           + C Y  C      S H++ H+R HTGEK +HC    C ++ ++   L  H ++HTG +P
Sbjct: 7   HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 97  FKCTICSHKAARKDHMKRHLQ 117
           F+C  C    +R DH+  H++
Sbjct: 67  FQCQKCDRAFSRSDHLALHMK 87

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKP 96
           + C Y  C      S H++ H+R HTGEK +HC    C ++ ++   L  H ++HTG +P
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 97  FKCTICSHKAARKDHMKRHLQ 117
           F+C  C    +R DH+  H++
Sbjct: 66  FQCQKCDRAFSRSDHLALHMK 86

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 55  HMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKR 114
           H+R H R HTGEK + CP C    S++  L+ H + HTGEKP+KC  C    +R+D +  
Sbjct: 120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNV 179
Query: 115 HLQLKHNADLSS 126
           H Q  H    +S
Sbjct: 180 H-QRTHTGKKTS 190

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 54  DHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMK 113
           D ++ H+R HTG K + C  C+Y  +  S+L  HL+ H+ E+PFKC IC + +     + 
Sbjct: 22  DKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLT 81
Query: 114 RHLQLKHNAD 123
            HL+  H  D
Sbjct: 82  VHLR-SHTGD 90

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 67  KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
           K F C  C    S+   L  H++ HTGEKPF C IC  K AR D  KRH  ++H
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55

>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The Human Zinc Finger Protein Zic 3 Length = 155

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 12  RLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMR----RHIRRHTGEK 67
           R  S   EL+ H  T +++  P+ +  +VC +++C    G S   +     HIR HTGEK
Sbjct: 33  RTFSTMHELVTHV-TMEHVGGPEQN-NHVCYWEECP-REGKSFKAKYKLVNHIRVHTGEK 89
Query: 68  AFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRHLQLKHNAD 123
            F CP   C    ++   L  H + HTGEKPFKC    C  + A     K+H+ + H +D
Sbjct: 90  PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSD 148
Query: 124 LSS 126
            S 
Sbjct: 149 KSG 151

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 55  HMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE--KPFKCTICSHKAARKDHM 112
           H+ RH   H+GEK + CP C  R  ++  +  H++ H G   KP+ C  C    +R DH+
Sbjct: 22  HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL 81
Query: 113 KRHLQLKHNADLSS 126
             H++  H+   S 
Sbjct: 82  NGHIKQVHSGPSSG 95

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 67  KAFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQ 117
           + + CP   C+ R S+   L  H++ HTG+KPF+C IC    +R DH+  H++
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70

>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain Bound To The 5s Ribosomal Rna Gene Internal Control Region Length = 190

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 33  PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR-- 90
           P V  +Y+C +  C      +  ++ H+ +HTGEK F C   E  C +     +HL R  
Sbjct: 7   PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCK--EEGCEKGFTSLHHLTRHS 64
Query: 91  --HTGEKPFKCTI--CSHKAARKDHMKRHLQLKHNADLSSMI--------KLPKDNYLDV 138
             HTGEK F C    C  +   K +MK+H    HN  +   +           K N L V
Sbjct: 65  LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 139 ISFLYLDQ 146
             F +  Q
Sbjct: 125 HQFSHTQQ 132

>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures Length = 92

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 38  KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR----HTG 93
           +Y+C +  C      +  ++ H+ +HTGEK F C   E  C +     +HL R    HTG
Sbjct: 3   RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCK--EEGCEKGFTSLHHLTRHSLTHTG 60
Query: 94  EKPFKCTI--CSHKAARKDHMKRHLQLKHN 121
           EK F C    C  +   K +MK+H    HN
Sbjct: 61  EKNFTCDSDGCDLRFTTKANMKKHFNRFHN 90

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHL 116
           RH+  H G + + C  C  +   +  L  H+K HTG KP++C IC+ +   +D   RH+
Sbjct: 27  RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 65  GEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
           G  +  C +C         L  HL+ HTGEKP+KC  C + AA+K  ++ HL+  H
Sbjct: 1   GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 68  AFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLS 125
           +F C  C    ++Q  L  H + HT EKP+ C +C+    R+D + RH Q  H+ +L 
Sbjct: 2   SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 34  DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTG 93
           D    Y+C+  K SY    S  +RRH   H+ EK + C +CE           H   HTG
Sbjct: 18  DGRVYYICIVCKRSYVCLTS--LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 94  EKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKL 130
           E+ ++C  C         M  H++  H+ D S   KL
Sbjct: 76  ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKL 112

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 53  SDHMRRHIRRHTGEKAFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAAR 108
           S  ++RH   HTGEK F C    C  R S    L  H++ HTG++P+ C    C+ K A+
Sbjct: 47  SSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQ 106
Query: 109 KDHMKRHL 116
             ++K H+
Sbjct: 107 STNLKSHI 114

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 31/103 (30%)
Query: 55  HMRRHIRRHTGEKAFHCPHCE------------------------YRCS-------QQSA 83
           +++ H R+HTGEK F CP C                         + CS       ++  
Sbjct: 22  YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRME 81
Query: 84  LYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS 126
           L  H+  HTGE P+KC+ CS +  +K  ++ H+   H+   S 
Sbjct: 82  LRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-18
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-10
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-18
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-18
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-11
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-16
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	9e-11
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-09
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-16
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-13
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-16
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	6e-16
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-14
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	4e-14
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-13
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-11
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-09
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-13
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-06
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-13
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	6e-11
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	9e-13
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	4e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-12
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-09
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-12
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-12
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	8e-12
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-10
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-12
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	6e-08
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-11
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	8e-10
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-11
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	9e-11
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-09
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-11
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-11
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-09
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	5e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-11
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	5e-09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-08
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-11
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	5e-08
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-10
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	8e-10
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	8e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-11
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-11
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	6e-10
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-06
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	9e-11
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	2e-05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	1e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-10
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	7e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-10
2epa_A	72	Krueppel-like factor 10; transforming growth facto	2e-10
2epa_A	72	Krueppel-like factor 10; transforming growth facto	1e-08
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-10
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-08
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-10
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-10
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-09
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-09
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	1e-04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-09
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-09
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-09
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-09
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-09
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	8e-08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-07
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-09
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-09
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-09
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-09
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-09
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-09
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-09
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	5e-07
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-09
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-09
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-09
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-09
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-09
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	3e-09
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-09
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-09
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-09
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-09
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-09
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-09
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-09
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-09
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-09
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-09
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-09
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	5e-09
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-09
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-09
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-09
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-09
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-09
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	7e-09
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	7e-09
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	8e-09
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	8e-09
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	8e-09
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-09
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-09
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-09
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-08
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-08
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-08
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-08
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-08
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-08
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-08
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-08
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-08
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-08
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-08
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-05
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-08
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-08
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-08
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-08
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-08
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-08
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-08
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-08
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-08
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	3e-08
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-08
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-08
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	3e-08
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-08
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-08
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-08
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	5e-08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	6e-08
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-08
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	7e-08
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	1e-07
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-07
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-07
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-04
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-07
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	3e-07
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	4e-07
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	6e-07
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-07
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	2e-06
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	4e-05
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-06
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	8e-06
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	1e-05
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	2e-05
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	2e-05
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	4e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	4e-05
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	7e-05
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	5e-04
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	6e-04

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 73.8 bits (182), Expect = 2e-18
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 38  KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEK 95
            + C Y  C+     S H++ H+R HTGEK + C    C++R ++   L  H ++HTG K
Sbjct: 15  IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74

Query: 96  PFKCTICSHKAARKDHMKRHL 116
           PF+C +C+   +R DH+  H+
Sbjct: 75  PFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 21/54 (38%), Positives = 28/54 (51%)

Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHT 92
          Y C ++ C +    SD + RH R+HTG K F C  C    S+   L  H+KRH 
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 51  GNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAAR 108
           G+S       R H  +     P C    ++ S L  HL+ HTGEKP+KCT   C  + AR
Sbjct: 4   GSSGPDLEKRRIHYCDY----PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR 59

Query: 109 KDHMKRHL 116
            D + RH 
Sbjct: 60  SDELTRHY 67

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 73.3 bits (181), Expect = 3e-18
 Identities = 35/77 (45%), Positives = 41/77 (53%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C  + C      S  + RHIR HTG+K F C  C    S+   L  H++ HTGEKPF 
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 99  CTICSHKAARKDHMKRH 115
           C IC  K AR D  KRH
Sbjct: 65  CDICGRKFARSDERKRH 81

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 72.6 bits (179), Expect = 4e-18
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 55  HMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE--KPFKCTICSHKAARKDHM 112
                 R H+GEK + C  C  R +Q   +  H+ +   E    F C  C    ARK  +
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61

Query: 113 KRHLQLKH 120
             HL+ +H
Sbjct: 62  GVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 54.1 bits (131), Expect = 6e-11
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 53 SDHMRRHIRRHTGE--KAFHCPHCEYRCSQQSALYNHLKR-HTGEKPF 97
          S  M+ HI +   E    FHCPHC+   +++S L  HL++ H+   P 
Sbjct: 28 SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 69.5 bits (171), Expect = 1e-16
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 38  KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEK 95
            + C Y  C      S H++ H+R HTGEK +HC    C ++ ++   L  H ++HTG +
Sbjct: 5   THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64

Query: 96  PFKCTICSHKAARKDHMKRH 115
           PF+C  C    +R DH+  H
Sbjct: 65  PFQCQKCDRAFSRSDHLALH 84

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 54.1 bits (131), Expect = 9e-11
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 62  RHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRH 115
           + T         C    ++ S L  HL+ HTGEKP+ C    C  K AR D + RH
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 49.1 bits (118), Expect = 6e-09
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
          Y C +  C +    SD + RH R+HTG + F C  C+   S+   L  H+KRH
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 67.5 bits (166), Expect = 3e-16
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 61  RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHL 116
              +      C  C Y CS ++AL  H + H  ++PFKC  CS    +  ++ +H+
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 60.2 bits (147), Expect = 3e-13
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 46  CSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
           CSY   +   +R H R H  ++ F C +C +   Q S L  H+K+  G+     +
Sbjct: 15  CSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 68.7 bits (169), Expect = 5e-16
 Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
           Y C ++ C      SD ++RH RRHTG K F C  C+ + S+   L  H + HTGEKPF 
Sbjct: 37  YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96

Query: 99  CTI--CSHKAARKDHMKRH 115
           C    C  K AR D + RH
Sbjct: 97  CRWPSCQKKFARSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 68.3 bits (168), Expect = 6e-16
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKP 96
           ++C Y  C+       H++ H R+HTGEK + C    CE R S+   L  H +RHTG KP
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66

Query: 97  FKCTICSHKAARKDHMKRH 115
           F+C  C  K +R DH+K H
Sbjct: 67  FQCKTCQRKFSRSDHLKTH 85

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 64  TGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRH 115
           + ++ F C  P C  R  + S L  H ++HTGEKP++C    C  + +R D +KRH
Sbjct: 2   SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 63.6 bits (155), Expect = 1e-14
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 63  HTGEKAFHCPHCEYRCSQQSALYNHLKRHT---GEKPFKCTICSHKAARKDHMKRHLQLK 119
            +G     C  C + C Q+++L  H ++H        F C  C  +  + D +  H    
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 120 HNADLS 125
           H A L 
Sbjct: 62  HPALLL 67

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 44.3 bits (105), Expect = 4e-07
 Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 5/72 (6%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHT---GEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
             C  + C +       +  H R+H        F C  C  R  +  ++  H  +     
Sbjct: 8   LQC--EICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65

Query: 96  PFKCTICSHKAA 107
                  S  ++
Sbjct: 66  LLAPQESSGPSS 77

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 62.6 bits (153), Expect = 4e-14
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKP 96
           YVC ++ C       + ++ H   HT +  + CPH  C+ R S  S L  H K H G   
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 97  FKCTICSHKAARKDHMKRHLQLKH 120
            K   CS          +H+   H
Sbjct: 62  KKDDSCSFVGKTWTLYLKHVAECH 85

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 62.1 bits (152), Expect = 1e-13
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC----SHKAAR 108
            D ++ H+R HTG K + C  C+Y  +  S+L  HL+ H+ E+PFKC IC     + +  
Sbjct: 21  KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL 80

Query: 109 KDHMKRH 115
             H++ H
Sbjct: 81  TVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 54.7 bits (133), Expect = 5e-11
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
          S  + +H+R H+ E+ F C  C Y     S L  HL+ HTG+     
Sbjct: 49 SSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 51.7 bits (125), Expect = 1e-09
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 63  HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
                   C  C    S++  L  H++ HTG KP+KC  C + AA    + +H
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 61.0 bits (149), Expect = 1e-13
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 61  RRHTGEKAFHCPHCEYRCSQQSALYNHL--KRHTGEKPFKCTICSHKAARKDHMKRHLQL 118
               GE  + C  C    +  S    H         K + C  C  +  RKD+M  H+++
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62

Query: 119 KH 120
            H
Sbjct: 63  IH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 41.4 bits (98), Expect = 4e-06
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 53 SDHMRRHIR--RHTGEKAFHCPHCEYRCSQQSALYNHLKRHTG 93
            +  RH         K + CP C    +++  +  H+K    
Sbjct: 23 ISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 60.4 bits (147), Expect = 2e-13
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 53  SDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKD 110
            +++  ++      + + CP   C+ R S+   L  H++ HTG+KPF+C IC    +R D
Sbjct: 6   MNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63

Query: 111 HMKRHL 116
           H+  H+
Sbjct: 64  HLTTHI 69

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 53.8 bits (130), Expect = 6e-11
 Identities = 21/54 (38%), Positives = 27/54 (50%)

Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHT 92
          Y C  + C      SD + RHIR HTG+K F C  C    S+   L  H++ HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 59.4 bits (145), Expect = 9e-13
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE--KPFKCTICSHKAARKD 110
             H+ RH   H+GEK + CP C  R  ++  +  H++ H G   KP+ C  C    +R D
Sbjct: 20  VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79

Query: 111 HMKRHLQLKH 120
           H+  H++  H
Sbjct: 80  HLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 42.1 bits (100), Expect = 4e-06
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 53 SDHMRRHIRRHTGE--KAFHCPHCEYRCSQQSALYNHLKR-HTGEK 95
           D M  H+R H G   K + C  C    S+   L  H+K+ H+G  
Sbjct: 48 KDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 58.7 bits (143), Expect = 1e-12
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHM 112
           SDH+  HIR HTGEK F C  C  + ++      H        P          ++  H+
Sbjct: 16  SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHL 74

Query: 113 KRHLQ 117
           +  + 
Sbjct: 75  ENEVA 79

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 49.8 bits (120), Expect = 4e-09
 Identities = 24/49 (48%), Positives = 27/49 (55%)

Query: 67  KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
           K F C  C    S+   L  H++ HTGEKPF C IC  K AR D  KRH
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR---HTGEK 95
          SD  +RH               E   S+   L N + R     GE+
Sbjct: 44 SDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 58.2 bits (142), Expect = 2e-12
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHM 112
             H   H      +K + C  C+     +  L +H   HTGEKP++C IC  +  R  ++
Sbjct: 2   GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61

Query: 113 KRH 115
           K H
Sbjct: 62  KTH 64

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 45.1 bits (108), Expect = 1e-07
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
            ++  H   HTGEK + C  C  + ++ + L  H + H+GEKP+
Sbjct: 30 KGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 39  YVCLYQKCSYHT---GNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTG 93
           +VC +  CS           +  H+RRHTGEK   C    C    S+   L  HL+ HTG
Sbjct: 35  FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94

Query: 94  EKPFKCTIC------SHKAARKDHMKR 114
           EKP+ C         S+ + R  H  R
Sbjct: 95  EKPYMCEHEGCSKAFSNASDRAKHQNR 121

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 58.4 bits (142), Expect = 8e-12
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKR-HTGEK 95
           + C ++ C       ++++ H+R HTGEK + C H  C    S  S    H  R H+ EK
Sbjct: 68  HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127

Query: 96  PFKCTIC------SHKAARKDHMKRH 115
           P+ C +       +  ++ + H+K  
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 41  CLYQKCSYHTGNSDHMRRHIRR---HTGEKAFHCPHCEYRC-----SQQSALYNHLKRHT 92
           C +  CS    + + +  HI     H   K F C              Q  L  H++RHT
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63

Query: 93  GEKPFKCTI--CSHKAARKDHMKRH 115
           GEKP KCT   C    +R +++K H
Sbjct: 64  GEKPHKCTFEGCRKSYSRLENLKTH 88

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRR-HTGEKAFHC--PHCEYRCSQQSALYNHLKRHTG 93
           Y+C ++ CS    N+    +H  R H+ EK + C  P C  R +  S+L  H+K   G
Sbjct: 98  YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 12/62 (19%)

Query: 66  EKAFHCPHCEYRCSQQSALYNHLKR---HTGEKPFKCTIC---------SHKAARKDHMK 113
           E       C      Q  L +H+     H   K F C              +     HM+
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60

Query: 114 RH 115
           RH
Sbjct: 61  RH 62

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 57.6 bits (140), Expect = 3e-12
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIR-RHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEK 95
             C +  C     N  ++  H + +H  +K+F CP   C    + +  L  H+K H+  +
Sbjct: 8   MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67

Query: 96  PFKCTIC 102
            + C   
Sbjct: 68  DYICEFS 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 46.4 bits (111), Expect = 6e-08
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 63  HTGEKAFHCPH--CEYRCSQQSALYNHLK-RHTGEKPFKCT--IC----SHKAARKDHMK 113
            +G     C    C    S +  L +H K +H  +K F C    C    + K   K+HMK
Sbjct: 2   SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61

Query: 114 RH 115
            H
Sbjct: 62  LH 63

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 56.4 bits (137), Expect = 1e-11
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 55  HMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE----KPFKCTICSHKAARKD 110
                 R HTGEK + C HC+    Q+  L  H KR+         F C+ C     R++
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61

Query: 111 HMKRH 115
            M RH
Sbjct: 62  TMARH 66

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 51.4 bits (124), Expect = 8e-10
 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 4/54 (7%)

Query: 53  SDHMRRHIRRHTGE----KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
              +  H +R+        AF C  C    ++++ +  H     G    +    
Sbjct: 28  KQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 56.7 bits (138), Expect = 1e-11
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKA-ARKDH 111
           S            +K F C  C    ++   L  H + HT E+P+ C IC HKA  R+DH
Sbjct: 2   SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC-HKAFRRQDH 60

Query: 112 MKRH 115
           ++ H
Sbjct: 61  LRDH 64

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 54.4 bits (132), Expect = 9e-11
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
           S ++  H R HT E+ + C  C     +Q  L +H   H+ EKPFKC  C
Sbjct: 30  SYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 51.3 bits (124), Expect = 1e-09
 Identities = 14/48 (29%), Positives = 16/48 (33%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
            DH+R H   H+ EK F C  C     Q   L  H   H         
Sbjct: 58  QDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 12/73 (16%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRC----SQQSALYNHLKRHTGEKPFKCTI--C---- 102
              +  HIR HTGEK F CP     C    ++   L  H + HTGEKPFKC    C    
Sbjct: 75  KYKLVNHIRVHTGEKPFPCPFPG--CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132

Query: 103 SHKAARKDHMKRH 115
           ++ + RK HM  H
Sbjct: 133 ANSSDRKKHMHVH 145

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 55.8 bits (135), Expect = 7e-11
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 11/76 (14%)

Query: 52  NSDHMRRHIRRHTGEKAFHCPHCEY-----RC----SQQSALYNHLKRHTGEKPFKCTI- 101
               +  H+            H  Y     R       +  L NH++ HTGEKPF C   
Sbjct: 37  TMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFP 96

Query: 102 -CSHKAARKDHMKRHL 116
            C    AR +++K H 
Sbjct: 97  GCGKIFARSENLKIHK 112

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKP 96
           + C +  C      S++++ H R HTGEK F C    C+ R +  S    H+  HT +K 
Sbjct: 91  FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150

Query: 97  FKCT 100
              +
Sbjct: 151 GPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 5/60 (8%), Positives = 11/60 (18%)

Query: 45  KCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSH 104
                                + +     C+   S    L  H+       P +     +
Sbjct: 2   SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 56.3 bits (137), Expect = 2e-11
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
                RH+  H G + + C  C  +   +  L  H+K HTG KP++C IC
Sbjct: 22  KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 49.7 bits (120), Expect = 5e-09
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
             H+  H++ HTG K + C  C  R   + +   H    +  K ++    
Sbjct: 50  KHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 47.8 bits (115), Expect = 3e-08
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 61  RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC----SHKAARKDHMKRH 115
              +G+K + C  C    + +S    H+  H G +P+ C +C      K     HMK H
Sbjct: 3   SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 55.1 bits (134), Expect = 2e-11
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 51  GNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
           G+S    R   +    + + C  C    S  S L  H + HTGEKP+KC  C
Sbjct: 1   GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.3 bits (111), Expect = 5e-08
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
          S  + +H R HTGEK + C  C     Q+S L  H + HTG  P  
Sbjct: 31 SSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 57.1 bits (139), Expect = 4e-11
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC----SHKAAR 108
           SDH+  H R HTGEK + CP C    S +  L  H + HTGEKP+KC  C    S +A  
Sbjct: 34  SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANL 93

Query: 109 KDHMKRH 115
           + H + H
Sbjct: 94  RAHQRTH 100

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 56.3 bits (137), Expect = 9e-11
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHM 112
             H+R H R HTGEK + CP C    S++  L+ H + HTGEKP+KC  C    +R+D +
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177

Query: 113 KRH 115
             H
Sbjct: 178 NVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 55.9 bits (136), Expect = 1e-10
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHM 112
             ++R H R HTGEK + CP C    SQ + L  H + HTGEKP+KC  C    +R+D++
Sbjct: 90  RANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNL 149

Query: 113 KRH 115
             H
Sbjct: 150 HTH 152

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 53.6 bits (130), Expect = 8e-10
 Identities = 22/64 (34%), Positives = 28/64 (43%)

Query: 52  NSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDH 111
            S           GEK + CP C    S+   L  H + HTGEKP+KC  C    + K  
Sbjct: 5   GSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64

Query: 112 MKRH 115
           + RH
Sbjct: 65  LTRH 68

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.5 bits (109), Expect = 8e-07
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
            D++  H R HTGEK + CP C    S++ AL  H + HTG+K 
Sbjct: 146 EDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 56.0 bits (136), Expect = 4e-11
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRC----SQQSALYNHLKRHTGEKPFKCTI--CSHKA 106
           S  ++RH   HTGEK F C      C    S    L  H++ HTG++P+ C    C+ K 
Sbjct: 47  SSKLKRHQLVHTGEKPFQCTFEG--CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKF 104

Query: 107 ARKDHMKRH 115
           A+  ++K H
Sbjct: 105 AQSTNLKSH 113

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 55.6 bits (135), Expect = 5e-11
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
             C ++ C+    ++  MR+H+  H G +   C  C     + S L  H   HTGEKPF+
Sbjct: 6   IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQ 64

Query: 99  CTIC------SHKAARKDHMKRH 115
           CT        S     + H++ H
Sbjct: 65  CTFEGCGKRFSLDFNLRTHVRIH 87

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 52.5 bits (127), Expect = 7e-10
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRC----SQQSALYNHLKRHTGE 94
           + C ++ C        ++R H+R HTG++ + CP     C    +Q + L +H+  H   
Sbjct: 63  FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG--CNKKFAQSTNLKSHILTHAKA 120

Query: 95  KPFK 98
           K  +
Sbjct: 121 KNNQ 124

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 55.2 bits (134), Expect = 7e-11
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR---HTGEKPFKCTIC----SHK 105
             +++ H R+HTGEK F CP C     ++  L  H  R   +  E+ F C++C      +
Sbjct: 20  KYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRR 79

Query: 106 AARKDHMKRH 115
              + HM  H
Sbjct: 80  MELRLHMVSH 89

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 54.8 bits (133), Expect = 1e-10
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 53  SDHMRRHIRR---HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC----SHK 105
            +++  H  R   +  E+ F C  C+    ++  L  H+  HTGE P+KC+ C      K
Sbjct: 48  KENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107

Query: 106 AARKDHMKR 114
              + HM +
Sbjct: 108 KDLQSHMIK 116

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 52.5 bits (127), Expect = 6e-10
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 63  HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
            +G     CP C  +   +  L  H ++HTGEKPF+C  C     RK+++  H
Sbjct: 2   SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEK 95
              +R H+  HTGE  + C  C  +  Q+  L +H+ + H+G  
Sbjct: 79  RMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 53.1 bits (128), Expect = 9e-11
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 59  HIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK F C  P C +R S+   L  H + H+G KP   +
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 38.8 bits (91), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 86  NHLKRHTGEKPFKCT--ICSHKAARKDHMKRHL 116
           +     TGEKPF CT   C  + +R D + RH 
Sbjct: 2   SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC 71
          + C +  C +    SD + RH R H+G K    
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 53.2 bits (129), Expect = 1e-10
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC 102
           S  +  H+  H+  + + C +C  R  Q+S +  H   HTGEKP KC +C
Sbjct: 14  SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 38.2 bits (90), Expect = 7e-05
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTG 93
             M++H   HTGEK   C  C    SQ S L  H ++HTG
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 36.2 bits (85), Expect = 4e-04
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 68  AFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
           +F C  C     + S L  HL  H+  +P+ C  C  +  +K  MK+H
Sbjct: 1   SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 52.1 bits (126), Expect = 2e-10
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK F C  C+   + +S L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 52.4 bits (126), Expect = 2e-10
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 53  SDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAAR 108
           S          +  ++  C H  C     + S L  H + HTGEKPF C+   C  + AR
Sbjct: 2   SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61

Query: 109 KDHMKRHL 116
            D + RH 
Sbjct: 62  SDELSRHR 69

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRH 91
           ++C +  C      S H++ H R HTGEK F C    CE R ++   L  H + H
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 52.1 bits (126), Expect = 4e-10
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH 115
                H+GEK + C  C    S+ S L  H + HTGEKP+KC  C    ++   +  H
Sbjct: 4   GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 46.7 bits (112), Expect = 4e-08
 Identities = 18/45 (40%), Positives = 22/45 (48%)

Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
          S  + +H R HTGEK + C  C    SQ S L NH + HT     
Sbjct: 27 SSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 6e-10
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                  GEK + C  C    S +S L  H++ H+GEKP   +
Sbjct: 2   SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.6 bits (122), Expect = 8e-10
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    +Q S L NH + HTG KP   +
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 1e-09
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 +GEK F C  C  R +Q S L++H + HTGEKP   +
Sbjct: 2   SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 50.3 bits (121), Expect = 1e-09
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEKPFKCTIC 102
                +  K + C  C    S+   L  H+K+ HT E+P KC + 
Sbjct: 3   SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 86  NHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
           +     +  KP+ C  C    +R DH+  H++  H
Sbjct: 2   SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 50.2 bits (121), Expect = 1e-09
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 +GEK F C  C  R +Q S L++H + HTGEKP   +
Sbjct: 2   SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 49.8 bits (120), Expect = 1e-09
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
               TGEK + C  C+   + +S L  H + HTGE     
Sbjct: 3  SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 49.8 bits (120), Expect = 1e-09
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TG K + C  C    S +S L  H + HTG KP   +
Sbjct: 2   SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 49.8 bits (120), Expect = 1e-09
 Identities = 17/43 (39%), Positives = 19/43 (44%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK F C  C    S  S L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC--PHCEYRCSQQSALYNHLKRHTGEKP 96
           Y+C +  C      +  ++ H+ +HTGEK F C    CE   +    L  H   HTGEK 
Sbjct: 13  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72

Query: 97  FKCT--ICSHKAARKDHMKRH 115
           F C    C  +   K +MK+H
Sbjct: 73  FTCDSDGCDLRFTTKANMKKH 93

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKP 96
           YVC ++ C       + ++ H   HT +  + CPH  C+ R S  S L  H K H G   
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 164

Query: 97  FKCTICSHKAARKDHMKRHLQLKHN 121
            K   CS          +H+   H 
Sbjct: 165 KKDDSCSFVGKTWTLYLKHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 48.4 bits (116), Expect = 8e-08
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 39  YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAF----HCPHCEYRCSQQSALYNHLKRHTGE 94
           + C    C        +M++H  R    K      H  +C     + + L  H   HT +
Sbjct: 73  FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132

Query: 95  KPFKCT--ICSHKAARKDHMKRH 115
            P++C    C  + +    +KRH
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 59  HIRRHTGEKAFHCPHCEYRC----SQQSALYNHLKRHTGEKPFKCT--ICSHKAARKDHM 112
                   K + C   +  C    ++   L  HL +HTGEKPF C    C        H+
Sbjct: 3   EKALPVVYKRYICSFAD--CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60

Query: 113 KRH 115
            RH
Sbjct: 61  TRH 63

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 2e-09
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 +GEK + C  C    +Q S L NH + HTGEKP   +
Sbjct: 2   SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 49.5 bits (119), Expect = 2e-09
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TG++ + C  C      +S+L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.5 bits (119), Expect = 2e-09
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    +Q++ L  H K HTGEKP   +
Sbjct: 2   SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.4 bits (119), Expect = 2e-09
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    +++S L+ H + HTGE+    +
Sbjct: 2   SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 49.1 bits (118), Expect = 2e-09
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TG+K F C HC      +  L  H + HTGEK    +
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 2e-09
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 +GEK F C  C     Q   L +HL+ HTGEKP   +
Sbjct: 2   SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 49.7 bits (118), Expect = 2e-09
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
          KY+C  ++C         +++HIR HT  + +HC +C +    +  L  H+K     K
Sbjct: 1  KYIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 43.6 bits (102), Expect = 5e-07
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 69  FHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQ 117
           + C  C  R  + S L  H++ HT  +P+ CT C+     K ++ +H++
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 2e-09
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGE  + C  C    S++  L +H + H GEKP   +
Sbjct: 2   SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.0 bits (118), Expect = 3e-09
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    +Q S L  H   HTGEKP   +
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 3e-09
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C      +S+L  H   H+GEKP   +
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 49.1 bits (118), Expect = 3e-09
 Identities = 15/43 (34%), Positives = 17/43 (39%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK   C  C    S  S L  H + HTGE P   +
Sbjct: 2   SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 49.1 bits (118), Expect = 3e-09
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK ++C  C       S L  H + H+GEKP   +
Sbjct: 2   SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 49.1 bits (118), Expect = 3e-09
 Identities = 19/43 (44%), Positives = 22/43 (51%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK F C  C    S++SAL  H K HTGEKP   +
Sbjct: 2   SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 GEK + C  C    SQ S L  H + HTGEKP   +
Sbjct: 3   SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 3e-09
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
                TGE+ + C  C    + +S L  H K HTGEKP   
Sbjct: 2  SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK F C  C    +Q+  L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 3e-09
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C    + +  L  H K HTGE+P   +
Sbjct: 3   SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 48.7 bits (117), Expect = 4e-09
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    SQ + L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 4e-09
 Identities = 17/43 (39%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    SQ S L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 48.7 bits (117), Expect = 4e-09
 Identities = 17/43 (39%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    S+ S L  H K HTGEKP   +
Sbjct: 2   SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.7 bits (117), Expect = 4e-09
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C    + +S L  H K HT +KP   +
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.6 bits (117), Expect = 4e-09
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGE  F C  C    + ++ L  H K HTGE+P   +
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 5e-09
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK ++C  C       S L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 5e-09
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 G+K F C  C+   +Q S+L  H + HTGEKP   +
Sbjct: 3   SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 5e-09
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 +GEK + C +C       + L  H + HTGEKP   +
Sbjct: 2   SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 6e-09
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    +++S L+ H + HTGEKP   +
Sbjct: 2   SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 48.3 bits (116), Expect = 6e-09
 Identities = 16/42 (38%), Positives = 21/42 (50%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                +GEK + C  C    SQ+S L  H + HTGEKP   +
Sbjct: 3   SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 48.3 bits (116), Expect = 6e-09
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                +GEK F C  C       S  Y+H + H+GEKP   +
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 7e-09
 Identities = 14/43 (32%), Positives = 18/43 (41%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGE+   C  C     Q + L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 7e-09
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    S + +L  H + H+G+KP   +
Sbjct: 2   SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 7e-09
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK ++C  C    S+   L  H + H+GEKP   +
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 47.9 bits (115), Expect = 7e-09
 Identities = 12/42 (28%), Positives = 16/42 (38%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 G   + C  CE   S +  L  H + HT EKP   +
Sbjct: 3   SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 8e-09
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    +Q++ L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 8e-09
 Identities = 15/43 (34%), Positives = 18/43 (41%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C     + S L  H   HTGEKP   +
Sbjct: 2   SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 8e-09
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C    S +S+L  H   HTG+KP   +
Sbjct: 2   SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.9 bits (115), Expect = 9e-09
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
                TGEK + C  C    + +S L+ H K HTGEKP   
Sbjct: 2  SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 9e-09
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK F C  C      +S L  H   HT EKP   +
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 9e-09
 Identities = 15/43 (34%), Positives = 18/43 (41%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C       S L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 GEK + C  C+   SQ S+L  H   H GEKP   +
Sbjct: 3   SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                +GE+ + C  C     + S L  HLKRH  EK    +
Sbjct: 3   SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 12/42 (28%), Positives = 15/42 (35%)

Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
                TG K + C  C      +S L  H + HTGE     
Sbjct: 2  SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 47.9 bits (115), Expect = 1e-08
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 67  KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH 120
           ++F C  C    ++Q  L  H + HT EKP+ C +C+    R+D + RH Q  H
Sbjct: 1   RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 47.1 bits (113), Expect = 2e-08
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEK 95
           +H++RH R HT EK + C  C    +++  L  H ++ H+G  
Sbjct: 15 QEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C    +Q S L  H   HTGEKP   +
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 +GEK + C  C     + + L  H + HTG +P   +
Sbjct: 2   SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 63  HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
            +GEK F C  CE   S +S L  H + H  EKP   +
Sbjct: 5   SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C       S L  H   H+GE+P   +
Sbjct: 2   SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK F C  C    S    L  H + HTGEKP   +
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C    + +S L  H K HTGE+    +
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGE+ + C  C    +++S L  H + HTGEKP   +
Sbjct: 2   SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 47.1 bits (113), Expect = 1e-08
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
                GEK + C  C  R      L +HL+ HTG  P 
Sbjct: 2  SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 38.2 bits (90), Expect = 4e-05
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)

Query: 87  HLKRHTGEKPFKCTIC----SHKAARKDHMKRH 115
                 GEKP+ C IC     H    K H++ H
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 47.1 bits (113), Expect = 2e-08
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
                TG K + C  C    S  S+L  H   HTGEKP   
Sbjct: 2  SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 47.2 bits (113), Expect = 2e-08
 Identities = 15/42 (35%), Positives = 18/42 (42%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C      +  LY H   HTGEKP   +
Sbjct: 3   SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C    +Q S L  H + HTG KP   +
Sbjct: 3   SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 2e-08
 Identities = 13/41 (31%), Positives = 16/41 (39%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
               TGEK F C  C    S   +L+ HL+ H    P   
Sbjct: 3  SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TG+K + C  C    +Q S L  H   HTGEKP   +
Sbjct: 3   SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                + EK + C  C    +++  L  H + H GEK    +
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TG K F C  C    +++S L  H K HTGEKP   +
Sbjct: 2   SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.8 bits (112), Expect = 2e-08
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TG K + C  C    SQ S L  H + HTGEKP   +
Sbjct: 3   SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.7 bits (112), Expect = 2e-08
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGE+ + C  C     Q+S L  H + H GEKP   +
Sbjct: 3   SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 3e-08
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C       S L  H   HTGEKP   +
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 3e-08
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                +GEK + C  C     ++  L  H + HTGEK    +
Sbjct: 3   SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 3e-08
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C     Q+S L  H + HTGEKP   +
Sbjct: 3   SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.3 bits (111), Expect = 3e-08
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C    S  ++L  H + H+GEKP   +
Sbjct: 3   SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 3e-08
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C       S+L  H + HTGEKP   +
Sbjct: 3   SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 3e-08
 Identities = 11/43 (25%), Positives = 15/43 (34%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK   C  C      +S L  H + H  +K    +
Sbjct: 2   SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 3e-08
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                TGEK + C  C       S+   H + HTG++P   +
Sbjct: 3   SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 46.4 bits (111), Expect = 3e-08
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 +GE+ F C  C     ++S L  HL+ H+ EK    +
Sbjct: 2   SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 5e-08
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
               TGEK + C  C     ++S L+ H + HTGE P   
Sbjct: 3  SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 45.6 bits (109), Expect = 5e-08
 Identities = 10/42 (23%), Positives = 14/42 (33%)

Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
                +GEK + C  C      +S L  H + H G      
Sbjct: 2  SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 6e-08
 Identities = 12/43 (27%), Positives = 16/43 (37%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 TGEK + C  C       + L  HL+ HT E     +
Sbjct: 2   SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 45.6 bits (109), Expect = 6e-08
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
                +G+K + C  C     Q   L  H + HTGE+    
Sbjct: 2  SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 45.3 bits (108), Expect = 7e-08
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
                GEK + C  C    SQ+ +L  H++ HTG  P 
Sbjct: 2  SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 44.9 bits (107), Expect = 1e-07
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEKPFKCT 100
                TG+K + C  C     Q ++L  H +  HTGEKP   +
Sbjct: 3   SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 44.8 bits (107), Expect = 1e-07
 Identities = 13/42 (30%), Positives = 15/42 (35%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 GEK + C  C    S    L  H   HT EKP   +
Sbjct: 3   SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 44.4 bits (106), Expect = 1e-07
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
                GEK + C  C  R  Q + L  H+  HTG  P 
Sbjct: 2  SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 87  HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
                 GEKP+KC  C  +  +  H++ H
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAH 30

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 44.8 bits (107), Expect = 1e-07
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                  GE+   C  C     Q S    H + HTGEKP   +
Sbjct: 2   SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 43.7 bits (104), Expect = 3e-07
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
             +GE  + C  C    +++  L +H + H GE     
Sbjct: 3  SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 43.3 bits (103), Expect = 4e-07
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
               TGE  + C  C    S++  L +H K H+G+     
Sbjct: 3  SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 44.2 bits (104), Expect = 6e-07
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 9/72 (12%)

Query: 38  KYVCLYQKCSYHTGNSDHMRRHIRR-HTGEKAFH--------CPHCEYRCSQQSALYNHL 88
           +     + C         +  H+   H G    +        CP        +  L NH+
Sbjct: 23  QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82

Query: 89  KRHTGEKPFKCT 100
           + HTGEK    +
Sbjct: 83  RVHTGEKSGPSS 94

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 42.9 bits (102), Expect = 6e-07
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 58  RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                 +  K+  C  C    + +S L  H + HTGEKP   +
Sbjct: 2   SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 41.2 bits (97), Expect = 2e-06
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 87  HLKRHTGEKPFKCTICSHKAARKDHMKRHL 116
             +  TG KPF+C  C    +R DH+  H 
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 37.7 bits (88), Expect = 4e-05
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH 91
            R  TG K F CP C+   S+   L  H KRH
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 39.9 bits (94), Expect = 8e-06
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 59  HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT 100
                +GEK+  C  C       SAL  H + H GEK    +
Sbjct: 3   SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 40.0 bits (94), Expect = 8e-06
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK 98
                GE  + C  C    +Q+ +L  H +  +   P  
Sbjct: 2  SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 39.1 bits (92), Expect = 1e-05
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF 97
             +G++ + C  C     Q+ +L  H + HTG  P 
Sbjct: 3  SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 38.8 bits (91), Expect = 2e-05
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
           +GEK + C  C+   S  + L  H K HT +     
Sbjct: 5  SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHL-KRHTG---EKPFKCTICSHKAAR 108
             H   + +    E  + C +C ++    +    H+   H        + C  C+    R
Sbjct: 3   HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62

Query: 109 KDHMKRHLQLKHNADLSSMIKLPKDN 134
            D +  H    H  + +  + + K N
Sbjct: 63  YDALSEHNLKYHPGEENFKLTMVKRN 88

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 38.3 bits (89), Expect = 4e-05
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP 96
                 GE  F C  C+   +Q++ L  H + H  +  
Sbjct: 2  SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 39.9 bits (92), Expect = 4e-05
 Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 49  HTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAAR 108
              +       +        F CP C    S   +L  H++    E    C +C  +   
Sbjct: 55  QLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTS 112

Query: 109 KDHMKRHLQLKHN 121
            D    H+  KHN
Sbjct: 113 TDSALDHVCKKHN 125

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.2 bits (87), Expect = 7e-05
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC 99
               T  K+++C  C    ++   L  H K HT +     
Sbjct: 3  SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 13/43 (30%)

Query: 61  RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICS 103
                 K   C  C         L  H   H+GEKP+     S
Sbjct: 5   SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 51  GNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKD 110
           G+S    +  + H G+++  C  C     ++S         +  K   C  C   + ++ 
Sbjct: 1   GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEA 53

Query: 111 HMKRH 115
            + + 
Sbjct: 54  ALNKD 58

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 36.7 bits (84), Expect = 6e-04
 Identities = 10/73 (13%), Positives = 16/73 (21%), Gaps = 5/73 (6%)

Query: 53  SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLK-----RHTGEKPFKCTICSHKAA 107
               + +    TG   F C  C         L  H+      R    +            
Sbjct: 4   GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP 63

Query: 108 RKDHMKRHLQLKH 120
           RK  +      + 
Sbjct: 64  RKRSLLEMEGKED 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.93
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.93
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.93
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.9
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.9
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.86
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.86
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.86
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.83
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.83
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.83
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.82
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.82
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.82
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.82
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.81
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.81
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.8
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.8
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.8
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.79
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.78
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.77
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.77
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.76
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.76
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.75
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.75
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.73
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.73
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.71
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.7
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.67
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.66
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.66
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.65
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.65
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.65
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.64
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.63
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.63
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.63
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.63
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.62
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.62
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.61
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.61
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.58
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.56
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.56
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.56
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.56
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.55
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.55
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.55
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.53
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.53
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.51
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.5
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.49
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.49
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.48
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.46
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.45
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.44
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.44
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.44
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.43
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.43
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.43
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.38
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.36
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.34
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.3
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.3
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.26
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.26
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.26
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.26
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.26
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.25
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.25
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.24
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.24
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.23
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.23
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.23
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.22
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.22
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.21
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.19
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.18
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.18
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.18
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.18
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.17
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.17
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.17
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.16
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.16
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.16
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.16
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.16
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.16
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.16
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.15
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.15
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.14
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.14
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.12
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.11
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.1
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.1
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.1
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.1
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.1
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.1
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.09
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.09
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.09
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.08
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.08
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.08
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.07
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.06
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.05
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.05
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.03
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.03
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.02
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.01
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.01
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.01
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.01
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.01
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.0
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.0
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.0
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.99
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.99
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.99
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.99
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.98
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.98
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.98
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.98
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.97
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.97
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.96
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.96
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.95
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.9
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.9
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.88
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.85
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.84
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.84
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.78
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.78
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.72
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.71
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.7
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.69
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.68
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.64
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.63
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.61
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.59
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.59
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.57
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.55
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.52
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.51
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.48
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.47
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.46
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.46
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.45
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.44
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.43
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.43
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.41
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.4
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.39
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.39
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.38
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.38
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.38
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.37
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.36
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.35
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.35
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.34
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.34
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.34
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.33
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.31
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.29
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.58
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.56
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.55
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.22
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.21
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.19
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.18
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.17
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.15
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.42
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.41
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.4
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.12
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.1
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.1
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.09
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.09
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.08
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.06
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.06
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.05
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.0
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.9
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.89
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.2
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.95
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.93
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.34
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.01
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.93
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.56
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.36
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	94.87
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	94.85
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.65
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	89.86
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	89.3
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	89.26
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	89.26
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	88.78
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	88.04
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	87.56
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	86.19
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	83.51
4i1l_A	93	Scurfin, forkhead box protein P3; FOXP3, dimerizat	82.66
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	81.12

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=7.4e-27  Score=156.57  Aligned_cols=93  Identities=32%  Similarity=0.623  Sum_probs=55.2

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHH
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMK  113 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~  113 (151)
                      .++++|.|  +.|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|++.|.+++||.|..|++.|.....|.
T Consensus        73 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~  150 (190)
T 2i13_A           73 TGEKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLH  150 (190)
T ss_dssp             HCCCCEEC--TTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHH
T ss_pred             CCCCCccC--cccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHH
Confidence            34445555  5555555555555555555555555666666666666666666666666666666666666666666666


Q ss_pred             HHHhhhcCCcccccc
Q psy4404         114 RHLQLKHNADLSSMI  128 (151)
Q Consensus       114 ~H~~~~~~~~~~~~~  128 (151)
                      .|+++|+++++|.|.
T Consensus       151 ~H~~~H~~~~~~~C~  165 (190)
T 2i13_A          151 THQRTHTGEKPYKCP  165 (190)
T ss_dssp             HHHHHHHCCCCEECT
T ss_pred             HHHHhcCCCCCeECC
Confidence            666666666666554

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=2.9e-26  Score=153.69  Aligned_cols=121  Identities=27%  Similarity=0.536  Sum_probs=101.9

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCCh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ   81 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~   81 (151)
                      ++|.|+.|++.|.+.. .|..|      +..|.++++|.|  +.|++.|.+...|..|++.|.++++|.|+.|++.|...
T Consensus        20 ~~~~C~~C~~~f~~~~-~l~~H------~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   90 (190)
T 2i13_A           20 KPYACPECGKSFSRSD-HLAEH------QRTHTGEKPYKC--PECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQR   90 (190)
T ss_dssp             -----------CCSSH-HHHHG------GGCC---CCEEC--TTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCH
T ss_pred             CCCcCCCCccccCCHH-HHHHH------HHHcCCCCCccC--CCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCH
Confidence            5899999999999999 99999      466788899999  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCcccccccCC
Q psy4404          82 SALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLP  131 (151)
Q Consensus        82 ~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~  131 (151)
                      ..|..|++.|.++++|.|..|++.|.....|..|+++|+++++|.|..++
T Consensus        91 ~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~  140 (190)
T 2i13_A           91 ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG  140 (190)
T ss_dssp             HHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTC
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCC
Confidence            99999999999999999999999999999999999999999999986553

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.93  E-value=2.7e-26  Score=142.89  Aligned_cols=111  Identities=37%  Similarity=0.718  Sum_probs=102.9

Q ss_pred             ceeeccc--cccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccC
Q psy4404           2 ILVICQY--CEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCS   79 (151)
Q Consensus         2 ~~~~C~~--C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   79 (151)
                      ++|+|+.  ||+.|.+.. .|..|++.      |.++++|.|.++.|++.|.+...|..|++.|.++++|.|..|++.|.
T Consensus         5 ~~~~C~~~~C~~~f~~~~-~l~~H~~~------h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   77 (119)
T 2jp9_A            5 RPFMCAYPGCNKRYFKLS-HLQMHSRK------HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFS   77 (119)
T ss_dssp             CCBCCCSTTSCCCBSCHH-HHHHHHHH------HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             eeeeCCCCCCcchhCCHH-HHHHHHHh------hCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhC
Confidence            6899997  999999999 99999654      56778899943389999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhhhCCCCceeC--CcCCccccCHHHHHHHHhhh
Q psy4404          80 QQSALYNHLKRHTGEKPFKC--TICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        80 ~~~~l~~h~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~  119 (151)
                      ....|..|+++|.++++|.|  +.|++.|.....|..|+++|
T Consensus        78 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           78 RSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            99999999999999999999  89999999999999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.93  E-value=3.3e-26  Score=143.53  Aligned_cols=114  Identities=31%  Similarity=0.554  Sum_probs=101.8

Q ss_pred             ceeecc--ccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcc--cccc
Q psy4404           2 ILVICQ--YCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYR   77 (151)
Q Consensus         2 ~~~~C~--~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~~~   77 (151)
                      ++|+|+  .||+.|.+.. .|..|+++      | ++++|.|  +.|++.|.+...|..|+++|.++++|.|..  |++.
T Consensus         4 ~~~~C~~~~C~~~f~~~~-~l~~H~~~------h-~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~   73 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNS-AMRKHLHT------H-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR   73 (124)
T ss_dssp             -CEECCSTTCCCEESSHH-HHHHHHGG------G-SCCCEEC--TTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCE
T ss_pred             CcccCCCCCCcCccCCHH-HHHHHHHH------c-CCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCc
Confidence            579999  8999999999 99999754      4 6678999  999999999999999999999999999986  9999


Q ss_pred             cCChHHHHHHHhhhCCCCceeCC--cCCccccCHHHHHHHHhhhcCCccc
Q psy4404          78 CSQQSALYNHLKRHTGEKPFKCT--ICSHKAARKDHMKRHLQLKHNADLS  125 (151)
Q Consensus        78 ~~~~~~l~~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~  125 (151)
                      |.....|..|++.|.++++|.|+  .|++.|.....|..|+++|++++++
T Consensus        74 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           74 FSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             ESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence            99999999999999999999996  5999999999999999999988765

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.93  E-value=5e-26  Score=147.91  Aligned_cols=124  Identities=27%  Similarity=0.471  Sum_probs=108.6

Q ss_pred             ceeeccccccccccCchHHHHHHhhcC-CCCC--CCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcc--ccc
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCK-NLSR--PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEY   76 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~-~~~~--~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~~   76 (151)
                      ..|+|+.||+.|.+.. .|..|+++++ +...  ......|.|  +.|++.|.+...|..|++.|.++++|.|..  |++
T Consensus        24 ~~~~C~~C~~~f~~~~-~L~~H~~~~H~~~~~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~  100 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMH-ELVTHVTMEHVGGPEQNNHVCYWEEC--PREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGK  100 (155)
T ss_dssp             CSSSCCCCCCCBSSHH-HHHHHHHTTTSCCTTCSSCCCCBTTC--TTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCC
T ss_pred             cccccccCCcccCCHH-HHHHHHHhhcCCCcccCCccccccCC--CCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCC
Confidence            4688999999999999 9999987622 2111  011123789  999999999999999999999999999998  999


Q ss_pred             ccCChHHHHHHHhhhCCCCceeCCc--CCccccCHHHHHHHHhhhcCCcccccc
Q psy4404          77 RCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRHLQLKHNADLSSMI  128 (151)
Q Consensus        77 ~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~  128 (151)
                      .|.....|..|+++|.++++|.|..  |++.|.....|..|+++|+++++|.+.
T Consensus       101 ~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          101 IFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             EESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             ccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999999997  999999999999999999999998764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=8.4e-26  Score=141.50  Aligned_cols=112  Identities=25%  Similarity=0.473  Sum_probs=102.6

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHh---hcCCCceeCccccccc
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRR---HTGEKAFHCPHCEYRC   78 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~---h~~~~~~~C~~C~~~~   78 (151)
                      ++|.|+.|++.|.+.. .|..|+++      |.++++|.|  +.|++.|.+...|..|+..   +.++++|.|++|++.|
T Consensus         6 ~~~~C~~C~~~f~~~~-~l~~H~~~------h~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f   76 (124)
T 2dlq_A            6 SGVECPTCHKKFLSKY-YLKVHNRK------HTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF   76 (124)
T ss_dssp             SSCCCTTTCCCCSSHH-HHHHHHHH------HSSCCSCBC--TTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEE
T ss_pred             CCCCCCCCCCcCCCHH-HHHHHHHh------CCCCCCeEC--CCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCcc
Confidence            6799999999999999 99999654      567789999  9999999999999999985   5778899999999999


Q ss_pred             CChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhh-hcCC
Q psy4404          79 SQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQL-KHNA  122 (151)
Q Consensus        79 ~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-~~~~  122 (151)
                      .....|..|++.|.+++||.|..|++.|.....|..|++. |.++
T Consensus        77 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           77 RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             CCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            9999999999999999999999999999999999999985 4443

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=9.2e-26  Score=143.36  Aligned_cols=94  Identities=27%  Similarity=0.429  Sum_probs=86.5

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCH
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARK  109 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~  109 (151)
                      ...++|+++|.|  +.|++.|.+..+|..|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+|++.|...
T Consensus        14 ~~~h~Gek~y~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~   91 (133)
T 2lt7_A           14 ELIVDGRVYYIC--IVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY   91 (133)
T ss_dssp             EEEETTEEEEEE--TTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSH
T ss_pred             eeecCCCcCeEC--CCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCH
Confidence            456789999999  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCccc
Q psy4404         110 DHMKRHLQLKHNADLS  125 (151)
Q Consensus       110 ~~l~~H~~~~~~~~~~  125 (151)
                      ..|..|++++++++++
T Consensus        92 ~~L~~H~~~hh~~~p~  107 (133)
T 2lt7_A           92 QFMSSHIKSVHSQDPS  107 (133)
T ss_dssp             HHHHHHHHHHTCCCTT
T ss_pred             HHHHHHhHHhcCCCCC
Confidence            9999999999877654

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=1.5e-24  Score=140.77  Aligned_cols=124  Identities=25%  Similarity=0.415  Sum_probs=110.9

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeecc---CCCCcccCCchHHHHHHHhhcCCCceeCcc--ccc
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLY---QKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEY   76 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~---~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~~   76 (151)
                      .+|+|+.||+.|.+.. .|..|++.   ...+.++++|.|.+   +.|++.|.+...|..|++.|.++++|.|+.  |++
T Consensus         2 ~~~~C~~C~~~f~~~~-~L~~H~~~---~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~   77 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQE-QLVHHINS---EHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRK   77 (155)
T ss_dssp             CBCCBTTCCCBCSCHH-HHHHHHHH---HTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCC
T ss_pred             CcCCcCCCccccCCHH-HHHHHHHh---hccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCC
Confidence            4789999999999999 99999753   22577888999853   344599999999999999999999999985  999


Q ss_pred             ccCChHHHHHHHhhhCCCCceeCCc--CCccccCHHHHHHHH-hhhcCCccccccc
Q psy4404          77 RCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRHL-QLKHNADLSSMIK  129 (151)
Q Consensus        77 ~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~~~~~~~~~  129 (151)
                      .|.....|..|++.|.++++|.|..  |++.|.....|..|+ ++|.++++|.+..
T Consensus        78 ~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~  133 (155)
T 2gli_A           78 SYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL  133 (155)
T ss_dssp             CCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCS
T ss_pred             cccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCC
Confidence            9999999999999999999999998  999999999999999 7899999999854

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.91  E-value=4.5e-25  Score=140.17  Aligned_cols=98  Identities=20%  Similarity=0.382  Sum_probs=90.2

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCCh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ   81 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~   81 (151)
                      ++|+|++||+.|.... .|..|++      +|+++++|.|  +.|++.|.+...|..|+++|.+++||.|++|++.|...
T Consensus        21 k~y~C~~C~k~F~~~~-~L~~H~~------~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~   91 (133)
T 2lt7_A           21 VYYICIVCKRSYVCLT-SLRRHFN------IHSWEKKYPC--RYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY   91 (133)
T ss_dssp             EEEEETTTCCEESCHH-HHHHHHH------HHHCCSCEEC--SSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSH
T ss_pred             cCeECCCCCCCcCCHH-HHHHHHH------HcCCCCCeeC--CccCeecccccchhhhccccCCCccccCCCCCCCcCCH
Confidence            6899999999999999 9999965      4678899999  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCC------ceeCCcCCccccC
Q psy4404          82 SALYNHLKRHTGEK------PFKCTICSHKAAR  108 (151)
Q Consensus        82 ~~l~~h~~~h~~~~------~~~C~~C~~~f~~  108 (151)
                      ..|..|+++|.+++      +|.|..|++.|..
T Consensus        92 ~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~  124 (133)
T 2lt7_A           92 QFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIR  124 (133)
T ss_dssp             HHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCC
T ss_pred             HHHHHHhHHhcCCCCCCCCCCeecCCCCchhhh
Confidence            99999999987654      5899999988863

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=1.5e-24  Score=145.30  Aligned_cols=112  Identities=21%  Similarity=0.428  Sum_probs=56.7

Q ss_pred             eeec--cccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHH-Hhh-cCCCceeC--ccccc
Q psy4404           3 LVIC--QYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHI-RRH-TGEKAFHC--PHCEY   76 (151)
Q Consensus         3 ~~~C--~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~-~~h-~~~~~~~C--~~C~~   76 (151)
                      +|.|  +.||+.|.+.. .|..|+      ..|.++++|.|..+.|++.|.+...|..|+ +.| .+..+|.|  ..|++
T Consensus        42 ~~~C~~~~C~~~f~~~~-~l~~H~------~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k  114 (190)
T 1tf6_A           42 PFPCKEEGCEKGFTSLH-HLTRHS------LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGK  114 (190)
T ss_dssp             SSCCSSTTCCCCCSSHH-HHHHHH------TTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCE
T ss_pred             CccCCCCCCChhhCCHH-HHHHHH------HHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCcc
Confidence            3444  44555554444 455552      334444555551114555555555555555 333 23445555  45555


Q ss_pred             ccCChHHHHHHHhhhCCCCceeCCc--CCccccCHHHHHHHHhhhcC
Q psy4404          77 RCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        77 ~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~  121 (151)
                      .|.....|..|+++|.+++||.|+.  |++.|.....|..|+++|++
T Consensus       115 ~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          115 AFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             ECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             ccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            5555555555555555555555544  55555555555555555554

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.90  E-value=9.4e-24  Score=141.43  Aligned_cols=133  Identities=20%  Similarity=0.313  Sum_probs=115.8

Q ss_pred             ceeec--cccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc--ccccc
Q psy4404           2 ILVIC--QYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP--HCEYR   77 (151)
Q Consensus         2 ~~~~C--~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~~~   77 (151)
                      ++|+|  +.||+.|.+.. .|..|+++      |.++++|.|.++.|++.|.+...|..|+++|.++++|.|.  .|++.
T Consensus        11 ~~~~C~~~~C~~~f~~~~-~L~~H~~~------h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~   83 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNW-KLQAHLCK------HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLR   83 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHH-HHHHHHHH------HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCE
T ss_pred             cceeCCCCCCcchhCCHH-HHHHHHHh------cCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCc
Confidence            67999  78999999999 99999654      6677889996677999999999999999999999999999  89999


Q ss_pred             cCChHHHHHHH-hhh-CCCCceeC--CcCCccccCHHHHHHHHhhhcCCccccccc-CCCCCcccchhh
Q psy4404          78 CSQQSALYNHL-KRH-TGEKPFKC--TICSHKAARKDHMKRHLQLKHNADLSSMIK-LPKDNYLDVISF  141 (151)
Q Consensus        78 ~~~~~~l~~h~-~~h-~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~  141 (151)
                      |.....|..|+ +.| .++++|.|  ..|++.|.....|..|+++|+++++|.|.. .+...|.....+
T Consensus        84 f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L  152 (190)
T 1tf6_A           84 FTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRL  152 (190)
T ss_dssp             ESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHH
T ss_pred             cCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHH
Confidence            99999999999 667 46789999  889999999999999999999999999864 244444444433

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=4e-24  Score=138.78  Aligned_cols=113  Identities=24%  Similarity=0.553  Sum_probs=101.6

Q ss_pred             ceeeccc-----cccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcc--c
Q psy4404           2 ILVICQY-----CEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--C   74 (151)
Q Consensus         2 ~~~~C~~-----C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C   74 (151)
                      ++|+|+.     |++.|.+.. .|..|+      ..|.++++|.|.++.|++.|.+...|..|++.|.++++|.|+.  |
T Consensus        33 ~~~~C~~c~C~~c~~~f~~~~-~l~~H~------~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C  105 (155)
T 2gli_A           33 KEFVCHWGGCSRELRPFKAQY-MLVVHM------RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGC  105 (155)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHH-HHHHHT------HHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTC
T ss_pred             cceeCCCCCccchhhhhhhHH-HHHHHH------HhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCC
Confidence            4677764     459999999 999995      4567788999933369999999999999999999999999998  9


Q ss_pred             ccccCChHHHHHHH-hhhCCCCceeCCc--CCccccCHHHHHHHHhhhcC
Q psy4404          75 EYRCSQQSALYNHL-KRHTGEKPFKCTI--CSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        75 ~~~~~~~~~l~~h~-~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~  121 (151)
                      ++.|.....|..|+ +.|.+++||.|..  |++.|.....|..|+++|+|
T Consensus       106 ~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          106 SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            99999999999998 8999999999988  99999999999999999875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.87  E-value=4.1e-22  Score=118.03  Aligned_cols=89  Identities=39%  Similarity=0.751  Sum_probs=79.4

Q ss_pred             CCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHH
Q psy4404          35 VSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKR  114 (151)
Q Consensus        35 ~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~  114 (151)
                      ++++|.|+++.|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   80 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR   80 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHH
Confidence            35789994447999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCc
Q psy4404         115 HLQLKHNAD  123 (151)
Q Consensus       115 H~~~~~~~~  123 (151)
                      |+++|++++
T Consensus        81 H~~~H~~~k   89 (90)
T 1a1h_A           81 HTKIHLRQK   89 (90)
T ss_dssp             HHGGGGC--
T ss_pred             HHHHhcccC
Confidence            999998764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.86  E-value=2.1e-21  Score=120.52  Aligned_cols=107  Identities=32%  Similarity=0.598  Sum_probs=94.3

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc--ccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHH
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDH  111 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~  111 (151)
                      +++++|.|.++.|++.|.+...|..|++.|.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   81 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDH   81 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHH
Confidence            567899994445999999999999999999999999999  799999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCcccccc-cCCCCCcccchh
Q psy4404         112 MKRHLQLKHNADLSSMI-KLPKDNYLDVIS  140 (151)
Q Consensus       112 l~~H~~~~~~~~~~~~~-~~~~~~~~~~~~  140 (151)
                      |..|+++|+++++|.|. ..+...|.....
T Consensus        82 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~  111 (119)
T 2jp9_A           82 LKTHTRTHTGEKPFSCRWPSCQKKFARSDE  111 (119)
T ss_dssp             HHHHHHHHHTCCCEECCSTTCCCEESSHHH
T ss_pred             HHHHHHHhcCCCCeeCCCCCCccccCCHHH
Confidence            99999999999999984 334444444333

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.86  E-value=3.5e-21  Score=117.42  Aligned_cols=95  Identities=25%  Similarity=0.483  Sum_probs=88.7

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHH
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKD  110 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~  110 (151)
                      .....+++|.|  +.|++.|.+...|..|++.|.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|....
T Consensus        10 ~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   87 (106)
T 2ee8_A           10 LPSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSR   87 (106)
T ss_dssp             CCCCCCCCCBC--SSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHH
T ss_pred             CCcCCCcCeEC--CCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHH
Confidence            34456788999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCccccc
Q psy4404         111 HMKRHLQLKHNADLSSM  127 (151)
Q Consensus       111 ~l~~H~~~~~~~~~~~~  127 (151)
                      .|..|+++|++++++..
T Consensus        88 ~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           88 TLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHhCCCCCCcC
Confidence            99999999999888754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=2.5e-21  Score=115.96  Aligned_cols=91  Identities=30%  Similarity=0.633  Sum_probs=83.7

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHH
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHM  112 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l  112 (151)
                      +.++++|.|  +.|++.|.+...|..|++.|.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|
T Consensus         3 ~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   80 (96)
T 2dmd_A            3 SGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL   80 (96)
T ss_dssp             CCCCCCCCB--TTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHH
T ss_pred             CCCCcCeEC--CCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHH
Confidence            467788999  899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCccc
Q psy4404         113 KRHLQLKHNADLS  125 (151)
Q Consensus       113 ~~H~~~~~~~~~~  125 (151)
                      ..|+++|+++...
T Consensus        81 ~~H~~~h~~~~~p   93 (96)
T 2dmd_A           81 TVHLRSHTGDSGP   93 (96)
T ss_dssp             HHHHTTCCSCCCC
T ss_pred             HHHHHHhcCCCCC
Confidence            9999999877643

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.84  E-value=1e-20  Score=110.03  Aligned_cols=82  Identities=26%  Similarity=0.558  Sum_probs=69.7

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHh
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQ  117 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  117 (151)
                      ||.|  +.|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|.....|..|++
T Consensus         1 ~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A            1 SFDC--KICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             CEEC--SSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHH
T ss_pred             CccC--CCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHH
Confidence            4778  88888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hhcC
Q psy4404         118 LKHN  121 (151)
Q Consensus       118 ~~~~  121 (151)
                      +|+|
T Consensus        79 ~H~g   82 (82)
T 2kmk_A           79 KHTG   82 (82)
T ss_dssp             HHC-
T ss_pred             hhCC
Confidence            8764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.83  E-value=3.5e-20  Score=115.87  Aligned_cols=103  Identities=22%  Similarity=0.452  Sum_probs=89.2

Q ss_pred             CCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc--CCccccCHHHH
Q psy4404          35 VSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHM  112 (151)
Q Consensus        35 ~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l  112 (151)
                      ++++|.|+|..|++.|.+...|..|++.| +.++|.|..|++.|.....|..|++.|.++++|.|..  |++.|.....|
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l   80 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL   80 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHH
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHH
Confidence            35789995559999999999999999999 7889999999999999999999999999999999986  99999999999


Q ss_pred             HHHHhhhcCCcccccc-cCCCCCcccc
Q psy4404         113 KRHLQLKHNADLSSMI-KLPKDNYLDV  138 (151)
Q Consensus       113 ~~H~~~~~~~~~~~~~-~~~~~~~~~~  138 (151)
                      ..|+++|+++++|.|. ..+...|...
T Consensus        81 ~~H~~~h~~~~~~~C~~~~C~~~f~~~  107 (124)
T 1ubd_C           81 RTHVRIHTGDRPYVCPFDGCNKKFAQS  107 (124)
T ss_dssp             HHHHHHHHCCCCCCCCSTTCCCCCSST
T ss_pred             HHHHHHhCCCCceECCCCCCCCccCCH
Confidence            9999999999999985 2344444433

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.8e-20  Score=114.52  Aligned_cols=94  Identities=18%  Similarity=0.259  Sum_probs=86.9

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCH
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARK  109 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~  109 (151)
                      +..++++++|.|  +.|++.|.+...|..|++.|.  ++|.|.+|++.|.....|..|+. |.+++||.|..|++.|...
T Consensus         8 ~~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~   82 (107)
T 1wjp_A            8 ASPVENKEVYQC--RLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSS   82 (107)
T ss_dssp             CCCCCCCCCCBC--TTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSH
T ss_pred             CcccCCCcCeEC--CCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCH
Confidence            677889999999  999999999999999999984  68999999999999999999996 9999999999999999999


Q ss_pred             HHHHHHHh-hhcCCcccccc
Q psy4404         110 DHMKRHLQ-LKHNADLSSMI  128 (151)
Q Consensus       110 ~~l~~H~~-~~~~~~~~~~~  128 (151)
                      ..|..|++ .|.++++|...
T Consensus        83 ~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           83 FSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHHcCCCCCCCCC
Confidence            99999997 88888887653

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=5.9e-20  Score=114.69  Aligned_cols=101  Identities=23%  Similarity=0.449  Sum_probs=91.7

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhh---hCCCCceeCCcCCccccCHH
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKR---HTGEKPFKCTICSHKAARKD  110 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~---h~~~~~~~C~~C~~~f~~~~  110 (151)
                      +++++|.|  +.|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|+..   +.++++|.|..|++.|....
T Consensus         3 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~   80 (124)
T 2dlq_A            3 SGSSGVEC--PTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRM   80 (124)
T ss_dssp             CCCSSCCC--TTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHH
T ss_pred             CCCCCCCC--CCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHH
Confidence            56788999  99999999999999999999999999999999999999999999985   57888999999999999999


Q ss_pred             HHHHHHhhhcCCcccccccCCCCCccc
Q psy4404         111 HMKRHLQLKHNADLSSMIKLPKDNYLD  137 (151)
Q Consensus       111 ~l~~H~~~~~~~~~~~~~~~~~~~~~~  137 (151)
                      .|..|+++|+++++|.|..+. ..|..
T Consensus        81 ~l~~H~~~h~~~~~~~C~~C~-~~f~~  106 (124)
T 2dlq_A           81 ELRLHMVSHTGEMPYKCSSCS-QQFMQ  106 (124)
T ss_dssp             HHHHHHHHHSSSCSEECSSSC-CEESS
T ss_pred             HHHHHHHHcCCCCCccCCCcc-chhCC
Confidence            999999999999999996543 34433

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=6.8e-20  Score=109.46  Aligned_cols=87  Identities=29%  Similarity=0.657  Sum_probs=77.9

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCC--CceeCCcCCccccCHHH
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE--KPFKCTICSHKAARKDH  111 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~--~~~~C~~C~~~f~~~~~  111 (151)
                      +++++|.|  +.|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|++.|.++  ++|.|..|++.|.....
T Consensus         3 ~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~   80 (95)
T 2yt9_A            3 SGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDH   80 (95)
T ss_dssp             CCCSCEEC--SSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHH
T ss_pred             CCCCCeEC--CCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHH
Confidence            56788999  889999999999999999999999999999999999999999999999886  89999999999999999


Q ss_pred             HHHHHh-hhcCC
Q psy4404         112 MKRHLQ-LKHNA  122 (151)
Q Consensus       112 l~~H~~-~~~~~  122 (151)
                      |..|++ .|.++
T Consensus        81 L~~H~~~~H~~~   92 (95)
T 2yt9_A           81 LNGHIKQVHSGP   92 (95)
T ss_dssp             HHHHHHHTSCCC
T ss_pred             HHHHHHHhcCCC
Confidence            999986 56543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.82  E-value=6.7e-21  Score=116.12  Aligned_cols=89  Identities=27%  Similarity=0.456  Sum_probs=83.0

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCCh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ   81 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~   81 (151)
                      ++|.|+.|++.|.+.. .|..|+++      |.++++|.|  +.|++.|.+...|..|++.|.++++|.|.+|++.|...
T Consensus        16 ~~~~C~~C~~~f~~~~-~l~~H~~~------h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   86 (106)
T 2ee8_A           16 KEFICKFCGRHFTKSY-NLLIHERT------HTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQS   86 (106)
T ss_dssp             CCCBCSSSCCBCSSHH-HHHHHHHH------HCCSCCCBC--SSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSH
T ss_pred             cCeECCCCCCccCCHH-HHHHHHHH------cCCCCCcCC--CCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCH
Confidence            5799999999999999 99999654      667788999  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCCceeC
Q psy4404          82 SALYNHLKRHTGEKPFKC   99 (151)
Q Consensus        82 ~~l~~h~~~h~~~~~~~C   99 (151)
                      ..|..|+++|.+++||..
T Consensus        87 ~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           87 RTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHhCCCCCCcC
Confidence            999999999999998864

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=4.7e-21  Score=118.50  Aligned_cols=98  Identities=15%  Similarity=0.197  Sum_probs=88.7

Q ss_pred             HHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHh--hcCCCcee-Cccccccc--CChHHHHHHHhhhCC
Q psy4404          19 ELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRR--HTGEKAFH-CPHCEYRC--SQQSALYNHLKRHTG   93 (151)
Q Consensus        19 ~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~--h~~~~~~~-C~~C~~~~--~~~~~l~~h~~~h~~   93 (151)
                      .|..|      +.+|+++++|.|  +.|++.|.+...|..|++.  |.+.+++. |..|++.|  .....|..|+++|.+
T Consensus         6 ~l~~H------~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~   77 (115)
T 2dmi_A            6 SGKLY------GSIFTGASKFRC--KDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA   77 (115)
T ss_dssp             CCCCC------CCCCCCCCSEEB--SSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCC
T ss_pred             hhhhh------eeeeCCCCCEEC--CccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCC
Confidence            77888      678899999999  9999999999999999998  76666554 99999999  889999999999999


Q ss_pred             CCceeCCcCCccccCHHHHHHHHhhhcCCcc
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQLKHNADL  124 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  124 (151)
                      ++||.|..|++.|.....|..|++.++..+.
T Consensus        78 ~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           78 QKVLKCMYCGHSFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHHHHTTTTTC
T ss_pred             CcceECCCCCCccCCHHHHHHHHHHhCCccc
Confidence            9999999999999999999999999886544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=2.7e-20  Score=111.45  Aligned_cols=87  Identities=28%  Similarity=0.567  Sum_probs=81.1

Q ss_pred             CceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCC
Q psy4404           1 MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQ   80 (151)
Q Consensus         1 ~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   80 (151)
                      .++|.|+.|++.|.+.. .|..|+      ..|.++++|.|  +.|++.|.+...|..|++.|.++++|.|.+|++.|..
T Consensus         6 ~~~~~C~~C~~~f~~~~-~l~~H~------~~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   76 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKD-KLKTHM------RCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN   76 (96)
T ss_dssp             CCCCCBTTTTBCCCCHH-HHHHHG------GGCCCCCSEEC--SSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred             CcCeECCCCCCccCCHH-HHHHHH------HhcCCCCCEeC--CCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence            36899999999999999 999995      56778889999  9999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhCCCCc
Q psy4404          81 QSALYNHLKRHTGEKP   96 (151)
Q Consensus        81 ~~~l~~h~~~h~~~~~   96 (151)
                      ...|..|+++|.++++
T Consensus        77 ~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           77 SSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             HHHHHHHHTTCCSCCC
T ss_pred             HHHHHHHHHHhcCCCC
Confidence            9999999999998765

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.81  E-value=2.3e-19  Score=108.03  Aligned_cols=88  Identities=34%  Similarity=0.782  Sum_probs=81.3

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc--ccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHH
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDH  111 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~  111 (151)
                      ...++|.|.++.|++.|.....|..|++.|.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHH
Confidence            445689995557999999999999999999999999996  699999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcC
Q psy4404         112 MKRHLQLKHN  121 (151)
Q Consensus       112 l~~H~~~~~~  121 (151)
                      |..|+++|++
T Consensus        91 l~~H~~~H~~  100 (100)
T 2ebt_A           91 LALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999999864

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.81  E-value=1.6e-19  Score=110.66  Aligned_cols=88  Identities=28%  Similarity=0.580  Sum_probs=83.9

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHH
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKD  110 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~  110 (151)
                      ..|+++++|.|  . |++.|.+...|..|++.|.++++|.|+.|++.|.....|..|++.|.++++|.|..|++.|....
T Consensus         3 ~~h~~~k~~~C--~-C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   79 (110)
T 2csh_A            3 SGSSGDKLYPC--Q-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRD   79 (110)
T ss_dssp             CCCCCCCCEEC--T-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHH
T ss_pred             CCCCCCCCEec--c-CCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHH
Confidence            56789999999  3 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcC
Q psy4404         111 HMKRHLQLKHN  121 (151)
Q Consensus       111 ~l~~H~~~~~~  121 (151)
                      .|..|++.|+.
T Consensus        80 ~l~~H~~~~~~   90 (110)
T 2csh_A           80 SFHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHccc
Confidence            99999999874

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.80  E-value=2.1e-20  Score=108.73  Aligned_cols=82  Identities=32%  Similarity=0.528  Sum_probs=76.1

Q ss_pred             eeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChH
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQS   82 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~   82 (151)
                      +|.|+.||+.|.+.. .|..|+++      |.++++|.|  +.|++.|.+...|..|++.|.++++|.|+.|++.|....
T Consensus         1 ~~~C~~C~~~f~~~~-~l~~H~~~------h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~   71 (82)
T 2kmk_A            1 SFDCKICGKSFKRSS-TLSTHLLI------HSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS   71 (82)
T ss_dssp             CEECSSSCCEESSHH-HHHHHHHH------HHTCCCEEC--SSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHH
T ss_pred             CccCCCCcccccCch-hHHHHHHH------cCCCCCeeC--CcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChH
Confidence            689999999999999 99999654      567788999  999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCC
Q psy4404          83 ALYNHLKRHTG   93 (151)
Q Consensus        83 ~l~~h~~~h~~   93 (151)
                      .|..|+++|+|
T Consensus        72 ~l~~H~~~H~g   82 (82)
T 2kmk_A           72 NLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHhhCC
Confidence            99999999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.80  E-value=2.4e-19  Score=105.75  Aligned_cols=83  Identities=34%  Similarity=0.801  Sum_probs=59.5

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc--ccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHH
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKR  114 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~  114 (151)
                      .+|.|.++.|++.|.+...|..|++.|.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL   83 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHH
Confidence            456673333777777777777777777777777775  477777777777777777777777777777777777777777


Q ss_pred             HHhhh
Q psy4404         115 HLQLK  119 (151)
Q Consensus       115 H~~~~  119 (151)
                      |+++|
T Consensus        84 H~~~H   88 (89)
T 2wbs_A           84 HMKRH   88 (89)
T ss_dssp             HGGGG
T ss_pred             HHHhh
Confidence            77765

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.80  E-value=3.8e-20  Score=109.47  Aligned_cols=86  Identities=29%  Similarity=0.532  Sum_probs=77.8

Q ss_pred             Cceeecc--ccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccccccc
Q psy4404           1 MILVICQ--YCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRC   78 (151)
Q Consensus         1 ~~~~~C~--~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~   78 (151)
                      .++|.|+  .|++.|.+.. .|..|+++      |.++++|.|  +.|++.|.+...|..|++.|.++++|.|+.|++.|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~-~l~~H~~~------h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   72 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSG-SLTRHIRI------HTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF   72 (90)
T ss_dssp             -CCEECCSSSCCCEESSHH-HHHHHHHH------HHCCCCEEC--TTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred             CCceECCCCCCCCccCCHH-HHHHHHHH------hCCCCCccC--CCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchh
Confidence            3689998  6999999999 99999654      567788999  99999999999999999999999999999999999


Q ss_pred             CChHHHHHHHhhhCCCC
Q psy4404          79 SQQSALYNHLKRHTGEK   95 (151)
Q Consensus        79 ~~~~~l~~h~~~h~~~~   95 (151)
                      .....|..|+++|.+++
T Consensus        73 ~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           73 ARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             SSHHHHHHHHGGGGC--
T ss_pred             CCHHHHHHHHHHhcccC
Confidence            99999999999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=1.4e-19  Score=110.58  Aligned_cols=87  Identities=20%  Similarity=0.329  Sum_probs=80.6

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCCh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQ   81 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~   81 (151)
                      ++|+|+.|++.|.... .|..|+++|        .++|.|  +.|++.|.....|..|++ |.++++|.|.+|++.|...
T Consensus        15 ~~~~C~~C~~~f~~~~-~l~~H~~~H--------~~~~~C--~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~   82 (107)
T 1wjp_A           15 EVYQCRLCNAKLSSLL-EQGSHERLC--------RNAAVC--PYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSS   82 (107)
T ss_dssp             CCCBCTTTCCBCSSHH-HHHHHHHHH--------HHSBCC--TTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSH
T ss_pred             cCeECCCCCCccCCHH-HHHHHHHHC--------CCCccC--CCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCH
Confidence            6899999999999999 999998764        368999  999999999999999996 9999999999999999999


Q ss_pred             HHHHHHHh-hhCCCCceeCC
Q psy4404          82 SALYNHLK-RHTGEKPFKCT  100 (151)
Q Consensus        82 ~~l~~h~~-~h~~~~~~~C~  100 (151)
                      ..|..|++ .|.++++|.+.
T Consensus        83 ~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           83 FSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHHcCCCCCCCCC
Confidence            99999997 89999999875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.78  E-value=5.3e-19  Score=104.27  Aligned_cols=84  Identities=31%  Similarity=0.627  Sum_probs=77.2

Q ss_pred             ceeeccc--cccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccC
Q psy4404           2 ILVICQY--CEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCS   79 (151)
Q Consensus         2 ~~~~C~~--C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   79 (151)
                      .+|.|+.  ||+.|.+.. .|..|+      ..|.++++|.|+++.|++.|.+...|..|++.|.++++|.|+.|++.|.
T Consensus         4 ~~~~C~~~~C~~~f~~~~-~l~~H~------~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   76 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSS-HLKAHL------RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS   76 (89)
T ss_dssp             CCEECCSTTTCCEESSHH-HHHHHH------TTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred             CCeeCCCCCCCCcCCCHH-HHHHHH------HhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccC
Confidence            5799999  999999999 999995      5678889999944479999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhhhC
Q psy4404          80 QQSALYNHLKRHT   92 (151)
Q Consensus        80 ~~~~l~~h~~~h~   92 (151)
                      ....|..|+++|.
T Consensus        77 ~~~~l~~H~~~H~   89 (89)
T 2wbs_A           77 RSDHLALHMKRHF   89 (89)
T ss_dssp             SHHHHHHHGGGGC
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998873

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=5.6e-19  Score=105.45  Aligned_cols=85  Identities=27%  Similarity=0.480  Sum_probs=77.4

Q ss_pred             CceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCC--CceeCccccccc
Q psy4404           1 MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE--KAFHCPHCEYRC   78 (151)
Q Consensus         1 ~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~--~~~~C~~C~~~~   78 (151)
                      .++|.|+.|++.|.+.. .|..|++      .|.++++|.|  +.|++.|.+...|..|++.|+++  ++|.|+.|++.|
T Consensus         5 ~~~~~C~~C~~~f~~~~-~l~~H~~------~h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f   75 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVY-HLNRHKL------SHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF   75 (95)
T ss_dssp             CSCEECSSSCCEESSSH-HHHHHHH------HSCSSCSEEC--SSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred             CCCeECCCCCCccCChH-HHHHHHH------hcCCCCCCcC--CCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence            36899999999999999 9999965      4677889999  99999999999999999999987  899999999999


Q ss_pred             CChHHHHHHHh-hhCCC
Q psy4404          79 SQQSALYNHLK-RHTGE   94 (151)
Q Consensus        79 ~~~~~l~~h~~-~h~~~   94 (151)
                      .....|..|++ .|.++
T Consensus        76 ~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           76 SRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SSHHHHHHHHHHTSCCC
T ss_pred             CCHHHHHHHHHHhcCCC
Confidence            99999999985 67764

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.77  E-value=6.2e-19  Score=96.57  Aligned_cols=57  Identities=28%  Similarity=0.600  Sum_probs=38.0

Q ss_pred             CCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        66 ~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      ++||.|.+|++.|.....|..|+++|++++||.|.+|++.|.....|..|+++|+|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            456666666666666666666666666666666666666666666666666666654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.76  E-value=2.4e-18  Score=100.46  Aligned_cols=80  Identities=30%  Similarity=0.607  Sum_probs=65.1

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcc--cccccCChHHHHHHHhhhCCCCceeCCc---CCccccCHHHH
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKPFKCTI---CSHKAARKDHM  112 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~~~C~~---C~~~f~~~~~l  112 (151)
                      ||.|.|+.|++.|.+...|..|+++|.++++|.|+.  |++.|.....|..|+++|.+   |.|..   |++.|.....|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            466766778888888888888888888888888877  88888888888888888877   88888   88888888888


Q ss_pred             HHHHhhhc
Q psy4404         113 KRHLQLKH  120 (151)
Q Consensus       113 ~~H~~~~~  120 (151)
                      ..|+++|+
T Consensus        78 ~~H~~~hh   85 (85)
T 2j7j_A           78 LKHVAECH   85 (85)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhcC
Confidence            88887764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.76  E-value=6.9e-19  Score=105.95  Aligned_cols=85  Identities=33%  Similarity=0.651  Sum_probs=77.3

Q ss_pred             ceeeccc--cccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccC
Q psy4404           2 ILVICQY--CEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCS   79 (151)
Q Consensus         2 ~~~~C~~--C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   79 (151)
                      ++|.|+.  |++.|.... .|..|+++      |.++++|.|.++.|++.|.+...|..|++.|.++++|.|.+|++.|.
T Consensus        14 ~~~~C~~~~C~~~f~~~~-~l~~H~~~------h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   86 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSS-HLKAHLRT------HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS   86 (100)
T ss_dssp             CCEECCSSSCCCEESCHH-HHHHHHHH------HSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCS
T ss_pred             cceEcCCCCCCCcccCHH-HHHHHHHH------hCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccC
Confidence            5799996  999999999 99999654      66778899955579999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhhhCC
Q psy4404          80 QQSALYNHLKRHTG   93 (151)
Q Consensus        80 ~~~~l~~h~~~h~~   93 (151)
                      ....|..|+++|.+
T Consensus        87 ~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           87 RSDHLALHMKRHQN  100 (100)
T ss_dssp             SHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHhCC
Confidence            99999999999864

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=3.3e-18  Score=98.73  Aligned_cols=75  Identities=21%  Similarity=0.476  Sum_probs=67.9

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHH-hhcCCCceeCcc--cccccCChHHHHHHHhhhCCCCceeCCcCCcccc
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIR-RHTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAA  107 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~  107 (151)
                      .+++++|.|.++.|++.|.+...|..|++ .|.++++|.|+.  |++.|.....|..|+++|.+++||.|..|++.|.
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCCC
Confidence            35678899966679999999999999998 799999999998  9999999999999999999999999999999873

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.75  E-value=9.3e-18  Score=108.68  Aligned_cols=111  Identities=20%  Similarity=0.301  Sum_probs=94.2

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHh-hcCCCc--------eeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRR-HTGEKA--------FHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~-h~~~~~--------~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      ....++.+|.|  ..|++.|.+...|..|++. |.+..+        |.|..|++.|.....|..|++.|.++++|.|..
T Consensus        18 ~~~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   95 (155)
T 2rpc_A           18 WIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF   95 (155)
T ss_dssp             BCCTTCCSSSC--CCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSC
T ss_pred             eechhhccccc--ccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCc
Confidence            34556778999  9999999999999999997 666554        789999999999999999999999999999998


Q ss_pred             --CCccccCHHHHHHHHhhhcCCccccccc-CCCCCcccchhhhc
Q psy4404         102 --CSHKAARKDHMKRHLQLKHNADLSSMIK-LPKDNYLDVISFLY  143 (151)
Q Consensus       102 --C~~~f~~~~~l~~H~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  143 (151)
                        |++.|.....|..|+++|+++++|.|.. -+...|.....+..
T Consensus        96 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~  140 (155)
T 2rpc_A           96 PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK  140 (155)
T ss_dssp             TTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHH
Confidence              9999999999999999999999999864 24445554444443

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=2.1e-18  Score=105.69  Aligned_cols=83  Identities=23%  Similarity=0.355  Sum_probs=76.3

Q ss_pred             CceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCC
Q psy4404           1 MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQ   80 (151)
Q Consensus         1 ~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   80 (151)
                      .++|+| .|++.|.+.. .|..|++.      |.++++|.|  +.|++.|.+...|..|++.|.++++|.|+.|++.|..
T Consensus         8 ~k~~~C-~C~~~f~~~~-~l~~H~~~------h~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   77 (110)
T 2csh_A            8 DKLYPC-QCGKSFTHKS-QRDRHMSM------HLGLRPYGC--GVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW   77 (110)
T ss_dssp             CCCEEC-TTSCEESSHH-HHHHHHHH------HSCCCSEEC--TTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred             CCCEec-cCCCccCCHH-HHHHHHHH------cCCCcCccC--CCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence            368999 9999999999 99999754      566788999  9999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhCC
Q psy4404          81 QSALYNHLKRHTG   93 (151)
Q Consensus        81 ~~~l~~h~~~h~~   93 (151)
                      ...|..|++.|..
T Consensus        78 ~~~l~~H~~~~~~   90 (110)
T 2csh_A           78 RDSFHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccc
Confidence            9999999988754

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.73  E-value=5.7e-18  Score=92.70  Aligned_cols=58  Identities=28%  Similarity=0.531  Sum_probs=47.3

Q ss_pred             CcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCC
Q psy4404          36 SFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK   95 (151)
Q Consensus        36 ~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~   95 (151)
                      ++||.|  +.||+.|.+..+|..|+++|++++||.|.+|++.|.....|..|+++|+|++
T Consensus         2 EKpy~C--~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFC--NFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEEC--TTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccC--CCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            577888  8888888888888888888888888888888888888888888888888764

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.71  E-value=1e-18  Score=103.11  Aligned_cols=82  Identities=23%  Similarity=0.405  Sum_probs=67.4

Q ss_pred             CcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHH
Q psy4404          36 SFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH  115 (151)
Q Consensus        36 ~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H  115 (151)
                      +++|.|  +.|++.|.+...|..|+++|.++++|.|+.|++.|.....|..|++.|.+ .+|.|..|++.|.....|..|
T Consensus         1 ek~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H   77 (88)
T 1llm_C            1 MKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENE   77 (88)
T ss_dssp             CCCEEC--TTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcC--CCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHH
Confidence            357888  78888888888888888888888888888888888888888888887774 678888888888888888888


Q ss_pred             Hhhhc
Q psy4404         116 LQLKH  120 (151)
Q Consensus       116 ~~~~~  120 (151)
                      ++.++
T Consensus        78 ~~~~h   82 (88)
T 1llm_C           78 VARLK   82 (88)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=2.2e-18  Score=106.43  Aligned_cols=91  Identities=11%  Similarity=0.100  Sum_probs=77.8

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcc-eeeccCCCCccc--CCchHHHHHHHhhcCCCceeCccccccc
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFK-YVCLYQKCSYHT--GNSDHMRRHIRRHTGEKAFHCPHCEYRC   78 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~-~~C~~~~C~~~f--~~~~~l~~h~~~h~~~~~~~C~~C~~~~   78 (151)
                      ++|.|+.||+.|.... .|..|++.++    +.+.++ +.|  +.|++.|  .....|..|+++|.++++|.|.+|++.|
T Consensus        18 ~~~~C~~C~k~f~~~~-~L~~H~~~~~----h~~~~~~~~C--~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f   90 (115)
T 2dmi_A           18 SKFRCKDCSAAYDTLV-ELTVHMNETG----HYRDDNHETD--NNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSF   90 (115)
T ss_dssp             CSEEBSSSSCEESSHH-HHHHHHHHTC----CCBCSCCCCC--CCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBC
T ss_pred             CCEECCccCchhcCHH-HHHHHHHHhC----ccccCCCccC--CCCCcccccccHHHHHHHhhccCCCcceECCCCCCcc
Confidence            6899999999999999 9999987511    344444 459  9999999  8999999999999999999999999999


Q ss_pred             CChHHHHHHHhhhCCCCceeC
Q psy4404          79 SQQSALYNHLKRHTGEKPFKC   99 (151)
Q Consensus        79 ~~~~~l~~h~~~h~~~~~~~C   99 (151)
                      .....|..|++.|........
T Consensus        91 ~~~~~L~~H~~~hh~~~~~~~  111 (115)
T 2dmi_A           91 ESLQDLSVHMIKTKHYQKVSG  111 (115)
T ss_dssp             SSHHHHHHHHHHTTTTTCSCC
T ss_pred             CCHHHHHHHHHHhCCcccCCC
Confidence            999999999998876654443

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=2.4e-17  Score=99.17  Aligned_cols=80  Identities=19%  Similarity=0.311  Sum_probs=62.3

Q ss_pred             ccCCchHHHHHHHhhcCCCceeCcccccccC-ChHHHHHHHhhhCC-CCceeCCcCCccccCHHHHHHHHhhhcCCcccc
Q psy4404          49 HTGNSDHMRRHIRRHTGEKAFHCPHCEYRCS-QQSALYNHLKRHTG-EKPFKCTICSHKAARKDHMKRHLQLKHNADLSS  126 (151)
Q Consensus        49 ~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~-~~~~l~~h~~~h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  126 (151)
                      .+.....+..|+++|.++++|.|..|++.|. ....|..|+++|.+ +++|.|.+|++.|.....|..|+++|+++++..
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            3444555667788888888888888888888 88888888888877 778888888888888888888888888877754


Q ss_pred             cc
Q psy4404         127 MI  128 (151)
Q Consensus       127 ~~  128 (151)
                      ..
T Consensus        85 ~~   86 (98)
T 2gqj_A           85 AE   86 (98)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=2.1e-16  Score=92.37  Aligned_cols=75  Identities=15%  Similarity=0.298  Sum_probs=60.1

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCC----CceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCcc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE----KAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHK  105 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~----~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~  105 (151)
                      +++|+++++|.|  +.|++.|.....|..|++.++..    ++|.|..|++.|.....|..|++.|.+++++.|..|+..
T Consensus         7 ~~~H~~~k~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~~~   84 (86)
T 1x6h_A            7 GRTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPS   84 (86)
T ss_dssp             STTCCCCCCEEC--SSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCCCC
T ss_pred             cceecCCCCCcC--CCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCCCC
Confidence            567788888888  88888888888888888776654    578888888888888888888888888888888888765


Q ss_pred             c
Q psy4404         106 A  106 (151)
Q Consensus       106 f  106 (151)
                      |
T Consensus        85 ~   85 (86)
T 1x6h_A           85 S   85 (86)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.66  E-value=4.1e-17  Score=95.14  Aligned_cols=78  Identities=18%  Similarity=0.506  Sum_probs=71.2

Q ss_pred             eeec--cccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCC--CCcccCCchHHHHHHHhhcCCCceeCcc---cc
Q psy4404           3 LVIC--QYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQK--CSYHTGNSDHMRRHIRRHTGEKAFHCPH---CE   75 (151)
Q Consensus         3 ~~~C--~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~--C~~~f~~~~~l~~h~~~h~~~~~~~C~~---C~   75 (151)
                      +|.|  +.||+.|.+.. .|..|+++      |.++++|.|  +.  |++.|.+...|..|++.|++   |.|..   |+
T Consensus         1 p~~C~~~~C~~~f~~~~-~l~~H~~~------h~~~~~~~C--~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~   68 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHN-QLKVHQFS------HTQQLPYEC--PHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCS   68 (85)
T ss_dssp             CEECCSTTCCCEESSHH-HHHHHHHH------HHTTCCEEC--CSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCC
T ss_pred             CccCCCCCCCcccCCHH-HHHHHHHH------hCCCCCeeC--CCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCC
Confidence            6899  99999999999 99999654      667889999  77  99999999999999999988   99999   99


Q ss_pred             cccCChHHHHHHHhhhC
Q psy4404          76 YRCSQQSALYNHLKRHT   92 (151)
Q Consensus        76 ~~~~~~~~l~~h~~~h~   92 (151)
                      +.|.....|..|++.|.
T Consensus        69 ~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           69 FVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CEESSHHHHHHHHHHCC
T ss_pred             CccCCHHHHHHHHHhcC
Confidence            99999999999998763

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=2.3e-16  Score=95.32  Aligned_cols=74  Identities=28%  Similarity=0.564  Sum_probs=62.4

Q ss_pred             CCCCCCCCCcceeeccCCCCcccCCchHHHHHHH-hh---cCCCceeCcccccccCChHHHHHH-HhhhCCCCceeCCcC
Q psy4404          28 KNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIR-RH---TGEKAFHCPHCEYRCSQQSALYNH-LKRHTGEKPFKCTIC  102 (151)
Q Consensus        28 ~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~-~h---~~~~~~~C~~C~~~~~~~~~l~~h-~~~h~~~~~~~C~~C  102 (151)
                      +++....|+++|.|  +.|++.|.+...|..|++ .|   .+++||.|.+|++.|.....|..| +++|.+++||.|.++
T Consensus         8 ~~~~~~~gekpy~C--~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A            8 HNQQNKKVEGGYEC--KYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             TTTTCCCCCSSEEC--SSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEEC
T ss_pred             cccccCCCCcCcCC--CCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcc
Confidence            34566778899999  889999999999999987 47   557889999999999999999999 788999999998875


Q ss_pred             C
Q psy4404         103 S  103 (151)
Q Consensus       103 ~  103 (151)
                      .
T Consensus        86 ~   86 (102)
T 2ghf_A           86 K   86 (102)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.65  E-value=3.7e-18  Score=100.62  Aligned_cols=82  Identities=21%  Similarity=0.264  Sum_probs=74.3

Q ss_pred             CceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCC
Q psy4404           1 MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQ   80 (151)
Q Consensus         1 ~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   80 (151)
                      +++|.|+.||+.|.... .|..|+++      |.++++|.|  +.|++.|.....|..|++.|++ .++.|..|++.|..
T Consensus         1 ek~~~C~~C~k~f~~~~-~L~~H~~~------H~~~~~~~C--~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~   70 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSD-HLTTHIRT------HTGEKPFAC--DICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSK   70 (88)
T ss_dssp             CCCEECTTTCCEESCHH-HHHHHHHH------HHCCCCEEC--TTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHH-HHHHHHHH------cCCCCCccC--CCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHH
Confidence            47999999999999999 99999654      677889999  9999999999999999999985 78999999999999


Q ss_pred             hHHHHHHHhhhC
Q psy4404          81 QSALYNHLKRHT   92 (151)
Q Consensus        81 ~~~l~~h~~~h~   92 (151)
                      ...|..|++...
T Consensus        71 ~~~L~~H~~~~h   82 (88)
T 1llm_C           71 NYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHH
Confidence            999999987643

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.8e-16  Score=89.65  Aligned_cols=67  Identities=31%  Similarity=0.578  Sum_probs=47.4

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKC   99 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C   99 (151)
                      ..+.++++|.|  +.|++.|.....|..|+++|.++++|.|.+|++.|.....|..|+++|.+++||.|
T Consensus        11 ~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           11 WQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SCCCCSCSSBC--SSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CcCCCCCCEEC--CCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34455667777  67777777777777777777777777777777777777777777777777777665

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.1e-16  Score=92.41  Aligned_cols=77  Identities=29%  Similarity=0.443  Sum_probs=69.9

Q ss_pred             HHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCC----CceeCCcCCccccCHHHHHHHHhhhcCCcccccccCC
Q psy4404          56 MRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE----KPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIKLP  131 (151)
Q Consensus        56 l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~----~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~  131 (151)
                      +..|+++|.++++|.|..|++.|.....|..|++.+...    ++|.|..|++.|.....|..|+++|++++++.+..+.
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            567899999999999999999999999999999877665    7899999999999999999999999999999886654


Q ss_pred             C
Q psy4404         132 K  132 (151)
Q Consensus       132 ~  132 (151)
                      .
T Consensus        83 ~   83 (86)
T 1x6h_A           83 P   83 (86)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.63  E-value=5e-17  Score=102.21  Aligned_cols=86  Identities=20%  Similarity=0.304  Sum_probs=73.5

Q ss_pred             CCCCcceeeccCCCCcccC------CchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccc
Q psy4404          33 PDVSFKYVCLYQKCSYHTG------NSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKA  106 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~------~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f  106 (151)
                      ...++.+.|  +.|++.|.      ....|..|+ .|++++||.|..|++.|.....|..|+++|  ++||.|..|++.|
T Consensus        36 ~~~~~~~~c--~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f  110 (129)
T 2wbt_A           36 TPEQKRLIR--AIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEF  110 (129)
T ss_dssp             CHHHHHHHH--HHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBC
T ss_pred             ChhhCcccc--hhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCccc
Confidence            344566778  77766655      556677776 688899999999999999999999999999  8899999999999


Q ss_pred             cCHHHHHHHHhhhcCCc
Q psy4404         107 ARKDHMKRHLQLKHNAD  123 (151)
Q Consensus       107 ~~~~~l~~H~~~~~~~~  123 (151)
                      .....|..|+++|+++.
T Consensus       111 ~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A          111 TSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             SSHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHCCcc
Confidence            99999999999998753

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.63  E-value=8.1e-16  Score=87.61  Aligned_cols=61  Identities=30%  Similarity=0.609  Sum_probs=29.8

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCc
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKP   96 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~   96 (151)
                      .++++|.|  +.|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|.+++|
T Consensus        13 ~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           13 HSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CCCCSBCC--TTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             CCCCCeEC--CCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            34444555  44555555555555555555444444444444444444444444444444444

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=6.4e-16  Score=88.70  Aligned_cols=66  Identities=29%  Similarity=0.593  Sum_probs=62.0

Q ss_pred             hhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          62 RHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        62 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      .+.++++|.|.+|++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            456678999999999999999999999999999999999999999999999999999999998864

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=1.2e-15  Score=91.37  Aligned_cols=75  Identities=15%  Similarity=0.273  Sum_probs=66.8

Q ss_pred             CcccCCchHHHHHHHhhcCCCceeCccccccc-CChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHH-HhhhcCC
Q psy4404          47 SYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRC-SQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRH-LQLKHNA  122 (151)
Q Consensus        47 ~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~-~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~~  122 (151)
                      ...|.....|..|++.+.++++|.|+.|++.| .....|..|+++| +++||.|.+|++.|.....|..| +++|++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           13 PPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             CCSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            34567778888999999999999999999999 9999999999999 99999999999999999999999 8888653

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.5e-16  Score=91.65  Aligned_cols=69  Identities=16%  Similarity=0.376  Sum_probs=62.5

Q ss_pred             ceeeccc--cccccccCchHHHHHHhhcCCCCCCCCCcceeeccCC--CCcccCCchHHHHHHHhhcCCCceeCcccccc
Q psy4404           2 ILVICQY--CEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQK--CSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYR   77 (151)
Q Consensus         2 ~~~~C~~--C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~--C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~   77 (151)
                      ++|+|..  |++.|.+.. .|..|++.     .|.++++|.|  +.  |++.|.+...|..|+++|+++++|.|.+|++.
T Consensus         6 ~~~~C~~~~C~~~f~~~~-~L~~H~~~-----~H~~~~~~~C--~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~   77 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQ-YLNHHKKY-----QHIHQKSFSC--PEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS   77 (79)
T ss_dssp             SSEECSSTTTCCEESSHH-HHHHHHHH-----GGGSCCCEEC--SCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCC
T ss_pred             CCccCCCCCCcCccCCHH-HHHHHHHH-----HhCCCCCeEC--CCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCC
Confidence            5789887  999999999 99999641     4677889999  76  99999999999999999999999999999998


Q ss_pred             c
Q psy4404          78 C   78 (151)
Q Consensus        78 ~   78 (151)
                      |
T Consensus        78 F   78 (79)
T 2dlk_A           78 S   78 (79)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=8.1e-16  Score=87.17  Aligned_cols=62  Identities=32%  Similarity=0.655  Sum_probs=37.7

Q ss_pred             HhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        61 ~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      ++|.++++|.|..|++.|.....|..|++.|.+++||.|..|++.|.....|..|+++|+++
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            34555556666666666666666666666666666666666666666666666666666543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.61  E-value=1.8e-15  Score=86.18  Aligned_cols=65  Identities=26%  Similarity=0.598  Sum_probs=60.1

Q ss_pred             HhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccc
Q psy4404          61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLS  125 (151)
Q Consensus        61 ~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  125 (151)
                      ..+.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|+++++|
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            34567889999999999999999999999999999999999999999999999999999998875

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.6e-15  Score=85.41  Aligned_cols=62  Identities=27%  Similarity=0.635  Sum_probs=37.9

Q ss_pred             hcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCcc
Q psy4404          63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADL  124 (151)
Q Consensus        63 h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  124 (151)
                      |.++++|.|..|++.|.....|..|+++|.++++|.|..|++.|.....|..|+++|+++++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            34455566666666666666666666666666666666666666666666666666665544

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=8.3e-16  Score=88.22  Aligned_cols=64  Identities=33%  Similarity=0.635  Sum_probs=35.9

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHh-hhCCC-CceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLK-RHTGE-KPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~-~h~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      .|+++|.++++|.|.+|++.|.....|..|++ .|.++ ++|.|..|++.|.....|..|++.+++
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            34555555555555555555555555555554 34442 556666666666666666666665543

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.56  E-value=5.5e-15  Score=79.77  Aligned_cols=55  Identities=36%  Similarity=0.668  Sum_probs=36.5

Q ss_pred             CCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        66 ~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      +++|.|+.|++.|.....|..|+++|.+++||.|..|++.|.....|..|+++|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            3566677777777777667777666666677777777777777777777776665

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.3e-15  Score=91.53  Aligned_cols=80  Identities=16%  Similarity=0.265  Sum_probs=70.5

Q ss_pred             ccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccC-CchHHHHHHHhhcC-CCceeCcccccccCChHHHHHHHh
Q psy4404          12 RLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTG-NSDHMRRHIRRHTG-EKAFHCPHCEYRCSQQSALYNHLK   89 (151)
Q Consensus        12 ~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~-~~~~l~~h~~~h~~-~~~~~C~~C~~~~~~~~~l~~h~~   89 (151)
                      .+.... .+..|+      ..|.++++|.|  +.|++.|. ....|..|+++|++ +++|.|.+|++.|.....|..|++
T Consensus         5 s~~~~~-~~~~h~------~~h~~~~~~~C--~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~   75 (98)
T 2gqj_A            5 SSGPGG-PEEQWQ------RAIHERGEAVC--PTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM   75 (98)
T ss_dssp             CCCCCC-SCSHHH------HTTTTTSCCCC--TTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHH
T ss_pred             CCCCCC-cHHHHH------HHhccCCCcCC--CCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHH
Confidence            445555 778884      56788999999  99999999 99999999999998 899999999999999999999999


Q ss_pred             hhCCCCceeCC
Q psy4404          90 RHTGEKPFKCT  100 (151)
Q Consensus        90 ~h~~~~~~~C~  100 (151)
                      .|.+++|+...
T Consensus        76 ~h~~~kp~~~~   86 (98)
T 2gqj_A           76 AEHSAKPSDAE   86 (98)
T ss_dssp             HHSCSCSSCCC
T ss_pred             HHcCCCCCCCC
Confidence            99999885443

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=1.2e-14  Score=82.32  Aligned_cols=64  Identities=33%  Similarity=0.487  Sum_probs=60.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK   95 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~   95 (151)
                      ..+|.++++|.|  +.|++.|.....|..|++.|.++++|.|++|++.|.....|..|+++|.++.
T Consensus         6 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            6 SGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCTTTTCCCEEC--SSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CcccCCCCCccC--CCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            567899999999  9999999999999999999999999999999999999999999999998764

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.56  E-value=5.2e-15  Score=86.45  Aligned_cols=54  Identities=20%  Similarity=0.456  Sum_probs=31.7

Q ss_pred             cCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHh
Q psy4404          64 TGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQ  117 (151)
Q Consensus        64 ~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~  117 (151)
                      .+.++|.|++|++.|.....|..|+++|.+++||.|..|++.|.....|..|++
T Consensus        24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             CCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCc
Confidence            344455566666666666666666666666666666666666666666666643

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=5.3e-15  Score=82.23  Aligned_cols=61  Identities=26%  Similarity=0.575  Sum_probs=43.1

Q ss_pred             HhhcCCCceeCcccccccCChHHHHHHHhh-h-CCCCceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKR-H-TGEKPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        61 ~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~-h-~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      ++|.++++|.|+.|++.|.....|..|++. | .+++||.|+.|++.|.....|..|++.+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            345666677777777777777777777766 5 466777777777777777777777777664

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=1e-14  Score=82.08  Aligned_cols=64  Identities=27%  Similarity=0.545  Sum_probs=57.0

Q ss_pred             CCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCce
Q psy4404          32 RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF   97 (151)
Q Consensus        32 ~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~   97 (151)
                      .++++++|.|  +.|++.|.....|..|+++|.++++|.|.+|++.|.....|..|++.|.+++|.
T Consensus         3 s~~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKC--SECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEEC--SSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4677888999  889999999999999999999999999999999999999999999999888764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=8.8e-15  Score=88.35  Aligned_cols=68  Identities=16%  Similarity=0.413  Sum_probs=62.3

Q ss_pred             hcCCCceeCcccccccCChHHHHHHHh-hh---CCCCceeCCcCCccccCHHHHHHH-HhhhcCCcccccccC
Q psy4404          63 HTGEKAFHCPHCEYRCSQQSALYNHLK-RH---TGEKPFKCTICSHKAARKDHMKRH-LQLKHNADLSSMIKL  130 (151)
Q Consensus        63 h~~~~~~~C~~C~~~~~~~~~l~~h~~-~h---~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~~~~~~~~~~  130 (151)
                      -.+++||.|..|++.|.....|..|++ .|   .+++||.|..|++.|.....|..| +++|+++++|.|...
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~   85 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMV   85 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEEC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCcc
Confidence            357899999999999999999999997 58   568999999999999999999999 899999999999754

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.53  E-value=1.8e-14  Score=77.70  Aligned_cols=56  Identities=27%  Similarity=0.681  Sum_probs=37.3

Q ss_pred             ceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCc
Q psy4404          68 AFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNAD  123 (151)
Q Consensus        68 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  123 (151)
                      ||.|..|++.|.....|..|+++|.+++||.|..|++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            35666666666666666666666666666777777777777777777766666543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=6.2e-15  Score=88.22  Aligned_cols=78  Identities=13%  Similarity=0.201  Sum_probs=67.1

Q ss_pred             ccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCccc-CCchHHHHHHHhhcCCCceeCcccccccCChHHHHHH-
Q psy4404          10 EVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHT-GNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNH-   87 (151)
Q Consensus        10 ~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f-~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h-   87 (151)
                      ..+|.... .|..|+      ..+.++++|.|  +.|++.| .+..+|..|+++| ++++|.|.+|++.|.....|..| 
T Consensus        13 ~~~~~~~~-~~~~~~------~~~~~~~~~~C--~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~   82 (96)
T 2ctd_A           13 PPVYAAGS-LEEQWY------LEIVDKGSVSC--PTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHV   82 (96)
T ss_dssp             CCSSCTTC-HHHHHH------HHHHHTSCEEC--TTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHH
T ss_pred             CCCCCCch-HHHHHH------HHhcCCCCcCC--CCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHh
Confidence            34566667 888884      44567889999  9999999 9999999999999 99999999999999999999999 


Q ss_pred             HhhhCCCCce
Q psy4404          88 LKRHTGEKPF   97 (151)
Q Consensus        88 ~~~h~~~~~~   97 (151)
                      +++|.++..+
T Consensus        83 ~~~H~~~p~~   92 (96)
T 2ctd_A           83 MANHNSLPSG   92 (96)
T ss_dssp             HHHTCCCSSC
T ss_pred             HHhcCCCCCC
Confidence            8889865433

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.51  E-value=3.8e-14  Score=82.77  Aligned_cols=64  Identities=22%  Similarity=0.380  Sum_probs=57.3

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHH-hhhCCCC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHL-KRHTGEK   95 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~-~~h~~~~   95 (151)
                      +..+.+.++|.|  +.|++.|.+..+|..|+++|++++||.|.+|++.|.....|..|+ +.|+++.
T Consensus        20 ~~~~~~~~~h~C--~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           20 LGLSASAECHLC--PVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CSSCCCCTTEEC--TTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCCEEC--CCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            345667788999  999999999999999999999999999999999999999999997 5687764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3.7e-14  Score=81.37  Aligned_cols=56  Identities=23%  Similarity=0.634  Sum_probs=32.0

Q ss_pred             hcCCCceeCcccccccCChHHHHHHHhhhCC---CCceeCCcCCccccCHHHHHHHHhh
Q psy4404          63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTG---EKPFKCTICSHKAARKDHMKRHLQL  118 (151)
Q Consensus        63 h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~---~~~~~C~~C~~~f~~~~~l~~H~~~  118 (151)
                      |.++++|.|.+|++.|.....|..|+++|.+   +++|.|..|++.|.....|..|++.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~   60 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK   60 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHH
Confidence            3445555555555555555555555555553   5566666666666666666666643

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=4.7e-14  Score=79.90  Aligned_cols=62  Identities=32%  Similarity=0.567  Sum_probs=38.7

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhh
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRH   91 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h   91 (151)
                      ...+.++++|.|+++.|++.|.....|..|++.|.++++|.|+.|++.|.....|..|+++|
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            34455666666633356666666666666666666666666666666666666666666554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.49  E-value=5e-14  Score=75.90  Aligned_cols=56  Identities=36%  Similarity=0.663  Sum_probs=41.5

Q ss_pred             CCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhC
Q psy4404          35 VSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHT   92 (151)
Q Consensus        35 ~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~   92 (151)
                      |+++|.|  +.|++.|.+...|..|+++|.++++|.|+.|++.|.....|..|++.|.
T Consensus         1 g~~~~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSREC--SYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBC--TTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccC--CCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            3567778  7788888888888888888887778888888888888888888877664

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.48  E-value=3.4e-15  Score=93.76  Aligned_cols=81  Identities=19%  Similarity=0.340  Sum_probs=69.9

Q ss_pred             eeeccccccccc-----cCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccc
Q psy4404           3 LVICQYCEVRLE-----SNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYR   77 (151)
Q Consensus         3 ~~~C~~C~~~f~-----~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~   77 (151)
                      .+.|+.|++.|.     .....|..|+       .|+++++|.|  +.|++.|....+|..|+++|  ++||.|..|++.
T Consensus        41 ~~~c~~~~~~~~~~~~~~~~~~l~~h~-------~h~~~~~~~C--~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~  109 (129)
T 2wbt_A           41 RLIRAIVKTLIHNPQLLDESSYLYRLL-------ASKAISQFVC--PLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKE  109 (129)
T ss_dssp             HHHHHHHHHHHHCGGGTTTHHHHHHHH-------HHHHHCSEEC--TTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCB
T ss_pred             cccchhhhcccCCCcccCCHHHHHHHH-------HhCCCCCeEC--CCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcc
Confidence            356888888877     4443677774       3678899999  99999999999999999998  789999999999


Q ss_pred             cCChHHHHHHHhhhCCC
Q psy4404          78 CSQQSALYNHLKRHTGE   94 (151)
Q Consensus        78 ~~~~~~l~~h~~~h~~~   94 (151)
                      |.....|..|++.|.+.
T Consensus       110 f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A          110 FTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CSSHHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHHHCCc
Confidence            99999999999999875

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.46  E-value=1.3e-13  Score=74.29  Aligned_cols=54  Identities=26%  Similarity=0.732  Sum_probs=31.0

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCC
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE   94 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~   94 (151)
                      |.|  +.|++.|.+...|..|+++|.++++|.|+.|++.|.....|..|+++|.++
T Consensus         2 ~~C--~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            2 YIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CBC--TTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CcC--CCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            455  555555555555555555555555555555555555555555555555544

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.3e-13  Score=78.94  Aligned_cols=65  Identities=31%  Similarity=0.534  Sum_probs=57.2

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHH-hhcCC-CceeCcccccccCChHHHHHHHhhhC-CCCc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIR-RHTGE-KAFHCPHCEYRCSQQSALYNHLKRHT-GEKP   96 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~-~h~~~-~~~~C~~C~~~~~~~~~l~~h~~~h~-~~~~   96 (151)
                      +++|+++++|.|  +.|++.|.+...|..|++ .|.++ ++|.|+.|++.|.....|..|++.+. .+.|
T Consensus         7 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            7 GRTHSGEKPYEC--YICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCSCCCSEEC--TTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             ccccCCCCCeEC--CCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            678999999999  999999999999999997 57664 79999999999999999999998754 4444

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.4e-13  Score=77.93  Aligned_cols=66  Identities=20%  Similarity=0.353  Sum_probs=57.5

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcC---CCceeCcccccccCChHHHHHHH-hhhCCCCceeCC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTG---EKAFHCPHCEYRCSQQSALYNHL-KRHTGEKPFKCT  100 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~---~~~~~C~~C~~~~~~~~~l~~h~-~~h~~~~~~~C~  100 (151)
                      |+++++|.|  +.|++.|.....|..|+++|.+   +++|.|..|++.|.....|..|+ ..|.++++....
T Consensus         2 h~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~   71 (78)
T 2d9h_A            2 SSGSSGLQC--EICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQE   71 (78)
T ss_dssp             CCSCCCEEC--SSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCSS
T ss_pred             CCCCcCeEC--CCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCccc
Confidence            678899999  8999999999999999999985   78999999999999999999998 567777665433

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=2.5e-13  Score=73.91  Aligned_cols=53  Identities=32%  Similarity=0.728  Sum_probs=36.5

Q ss_pred             ceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHH-hhhc
Q psy4404          68 AFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHL-QLKH  120 (151)
Q Consensus        68 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~~~  120 (151)
                      ||.|..|++.|.....|..|++.|.+++||.|..|++.|.....|..|+ +.|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            5667777777777777777777777777777777777777777777775 3444

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=9.1e-14  Score=77.15  Aligned_cols=61  Identities=21%  Similarity=0.407  Sum_probs=52.0

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHh-h-cCCCceeCcccccccCChHHHHHHHhhhCC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRR-H-TGEKAFHCPHCEYRCSQQSALYNHLKRHTG   93 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~-h-~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~   93 (151)
                      .+|+++++|.|  +.|++.|.+..+|..|++. | .++++|.|+.|++.|.....|..|++.+.+
T Consensus         3 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEEC--TTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceEC--CCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            45778888999  8899999999999999887 6 478889999999999999999999887764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=9.9e-16  Score=86.71  Aligned_cols=69  Identities=17%  Similarity=0.167  Sum_probs=62.0

Q ss_pred             HHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCcee
Q psy4404          19 ELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFK   98 (151)
Q Consensus        19 ~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~   98 (151)
                      .|..|      +..|.++++|.|  +.|++.|.....|..       +++|.|..|++.|.....|..|+++|.+++||.
T Consensus         5 ~l~~H------~~~h~~~~~~~C--~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~   69 (73)
T 2ctu_A            5 SSGKR------QKIHLGDRSQKC--SKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG   69 (73)
T ss_dssp             SCCCC------CCCCCCCSEEEC--SSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSS
T ss_pred             hHHHH------HHHhCCCCCeeC--CcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCC
Confidence            67788      678899999999  999999999888765       678999999999999999999999999999999


Q ss_pred             CCcC
Q psy4404          99 CTIC  102 (151)
Q Consensus        99 C~~C  102 (151)
                      |.+|
T Consensus        70 C~~C   73 (73)
T 2ctu_A           70 PSSG   73 (73)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9887

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=1.9e-13  Score=77.36  Aligned_cols=60  Identities=33%  Similarity=0.771  Sum_probs=55.7

Q ss_pred             HhhcCCCceeCc--ccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          61 RRHTGEKAFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        61 ~~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      .++.++++|.|+  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+++|+
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            356788999997  599999999999999999999999999999999999999999999874

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=4.1e-13  Score=79.68  Aligned_cols=56  Identities=25%  Similarity=0.417  Sum_probs=27.3

Q ss_pred             CCCCcccCCchHHHHHHHh-hcCCCc--------eeCcccccccCChHHHHHHHhhhCCCCceeC
Q psy4404          44 QKCSYHTGNSDHMRRHIRR-HTGEKA--------FHCPHCEYRCSQQSALYNHLKRHTGEKPFKC   99 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~-h~~~~~--------~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C   99 (151)
                      +.|++.|.....|..|++. |.++++        |.|..|++.|.....|..|+++|.+++||.|
T Consensus        29 ~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   93 (95)
T 2ej4_A           29 KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS   93 (95)
T ss_dssp             CCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSS
T ss_pred             cccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            4555555555555555554 544444        4444444444444444444444444444443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=7.2e-13  Score=72.05  Aligned_cols=49  Identities=20%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             eeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHI   60 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~   60 (151)
                      +|.|+.|++.|.+.. .|..|+      ..|.++++|.|  +.|++.|.+...|..|+
T Consensus         2 ~~~C~~C~~~f~~~~-~l~~H~------~~h~~~~~~~C--~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            2 SFVCEVCTRAFARQE-HLKRHY------RSHTNEKPYPC--GLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CBCCTTTCCCBSCHH-HHHHHH------HTTTSSCSEEC--TTTCCEESSHHHHHHHH
T ss_pred             cCcCCCCccccCCHH-HHHHHH------HHhCCCCCccC--CCCCCccCCHHHHHHHH
Confidence            455555555555555 555553      23444445555  55555555555555553

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=5.2e-13  Score=74.19  Aligned_cols=55  Identities=20%  Similarity=0.322  Sum_probs=27.7

Q ss_pred             CCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc-ccccccCChHHHHHHHhhhCC
Q psy4404          35 VSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP-HCEYRCSQQSALYNHLKRHTG   93 (151)
Q Consensus        35 ~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~-~C~~~~~~~~~l~~h~~~h~~   93 (151)
                      +.++|.|  +.|++.|. ...|..|+++ .+++||.|+ .|++.|.....|..|+++|..
T Consensus         7 ~~~~~~C--~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            7 GKRTQPC--TYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             CCCEEEC--SSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             CCCCeec--cccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            3444555  55555555 5555555544 444555555 555555555555555544443

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.7e-12  Score=76.99  Aligned_cols=60  Identities=15%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             eeCcccccccCChHHHHHHHhh-hCCCCc--------eeCCcCCccccCHHHHHHHHhhhcCCcccccc
Q psy4404          69 FHCPHCEYRCSQQSALYNHLKR-HTGEKP--------FKCTICSHKAARKDHMKRHLQLKHNADLSSMI  128 (151)
Q Consensus        69 ~~C~~C~~~~~~~~~l~~h~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~  128 (151)
                      +.|..|++.|.....|..|++. |.++++        |.|..|++.|.....|..|+++|+++++|.|.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            5799999999999999999998 998887        99999999999999999999999999999863

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=3.3e-12  Score=70.86  Aligned_cols=57  Identities=18%  Similarity=0.402  Sum_probs=41.6

Q ss_pred             CCCceeCcccccccCChHHHHHHHhhhCCCCceeCC-cCCccccCHHHHHHHHhhhcCCc
Q psy4404          65 GEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT-ICSHKAARKDHMKRHLQLKHNAD  123 (151)
Q Consensus        65 ~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~-~C~~~f~~~~~l~~H~~~~~~~~  123 (151)
                      +.++|.|..|++.|. ...|..|+++ .+++||.|. .|++.|.....|..|+++|.+..
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            456777777777777 7777777777 777777777 77777777777777777766544

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.3e-15  Score=86.17  Aligned_cols=70  Identities=16%  Similarity=0.311  Sum_probs=62.7

Q ss_pred             chHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccccc
Q psy4404          53 SDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSMIK  129 (151)
Q Consensus        53 ~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~  129 (151)
                      ...|..|+++|.++++|.|..|++.|.....|..       +++|.|..|++.|.....|..|+++|+++++|.+..
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~   72 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSS   72 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCC
Confidence            4567789999999999999999999999887764       789999999999999999999999999999998753

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=66.89  Aligned_cols=43  Identities=21%  Similarity=0.238  Sum_probs=23.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.....|..|+++|.++++|.|.+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            4 GSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEC--SSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             cCCcCCCCCeeC--CCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1.6e-12  Score=66.88  Aligned_cols=43  Identities=28%  Similarity=0.321  Sum_probs=23.7

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|++|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            4 GSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCSSCBC--TTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CcCCCCCcCeEC--CCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=66.81  Aligned_cols=43  Identities=28%  Similarity=0.246  Sum_probs=23.3

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|++|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            4 GSSGTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCCCSEEC--SSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             cCCcCCCCCeeC--CCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.26  E-value=1.7e-12  Score=66.77  Aligned_cols=42  Identities=24%  Similarity=0.253  Sum_probs=22.1

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      .+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|+.|
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            5 SSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSEEC--SSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cCCCCCCceEC--CCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555555  5555555555555555555555555555443

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.3e-12  Score=66.23  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=19.4

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH   73 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   73 (151)
                      .+|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|++
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            5 SSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             CTTSSCCSEEC--SSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             cCCCCCcCeEC--CCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            33444444444  444444444444444444444444444443

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.26  E-value=9.6e-12  Score=70.02  Aligned_cols=58  Identities=31%  Similarity=0.557  Sum_probs=31.2

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcc--cccccCChHHHHHHHhh
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH--CEYRCSQQSALYNHLKR   90 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~--C~~~~~~~~~l~~h~~~   90 (151)
                      ....++|.|.++.|++.|.....|..|++.|.++++|.|.+  |++.|.....|..|+++
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            34445566622226666666666666665555555555543  55555555555555543

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.26  E-value=1.7e-12  Score=66.78  Aligned_cols=43  Identities=28%  Similarity=0.360  Sum_probs=23.6

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +..|+++++|.|  +.|++.|.....|..|+++|.+++||.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            4 GSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCSCBC--SSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCccCCCCceEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555543

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.26  E-value=1.8e-12  Score=66.69  Aligned_cols=43  Identities=21%  Similarity=0.253  Sum_probs=22.6

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            4 GSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCCCC--SSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             cCccCCCcCeEC--CCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            344455555555  5555555555555555555555555555443

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.8e-12  Score=66.64  Aligned_cols=43  Identities=23%  Similarity=0.273  Sum_probs=24.9

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            4 GSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCEEC--SSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCcCcCC--CCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            345555555666  5566666666666666655655555555544

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=2.3e-12  Score=65.61  Aligned_cols=43  Identities=16%  Similarity=0.140  Sum_probs=25.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|..|
T Consensus         2 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEEC--SSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCCcCccC--CCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344555556666  5566666666666666666665555555544

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2e-12  Score=66.46  Aligned_cols=43  Identities=23%  Similarity=0.253  Sum_probs=24.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.++++|.|+.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            4 GSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSCBC--SSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCccC--CccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=2.5e-12  Score=66.06  Aligned_cols=42  Identities=36%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      .+|+++++|.|  +.|++.|.....|..|+++|.++++|.|++|
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            5 SSGSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCSEEC--SSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCeEC--CCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44455555555  5555555555555555555555555555443

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=66.69  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=24.1

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            4 GSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCCB--TTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             cccCCCCCCeEC--CCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.26  E-value=1.9e-12  Score=66.54  Aligned_cols=43  Identities=23%  Similarity=0.329  Sum_probs=23.4

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.+++||.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            4 GSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSCCEEC--SSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             ccCCCCCcCcCC--CCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555543

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.4e-12  Score=66.19  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      ++|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|+.|
T Consensus         5 ~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            5 SSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSSSCCEEC--SSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccCCCCCeEC--CCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34445555555  4555555555555555555555555555443

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.8e-12  Score=66.65  Aligned_cols=43  Identities=28%  Similarity=0.343  Sum_probs=23.4

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|++|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            4 GSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSEEC--SSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             cccCCCCCCEeC--CcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555543

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3e-12  Score=65.84  Aligned_cols=42  Identities=24%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      .+|+++++|.|  +.|++.|.....|..|+++|.+++||.|++|
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            5 SSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCCCSEEC--SSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCcCcCC--CCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34445555555  4555555555555555555555555555443

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.4e-12  Score=66.18  Aligned_cols=43  Identities=28%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+...|..|+++|.++++|.|.+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            4 GSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSSEEC--SSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             ccCCCCCCCeEC--CCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=2.1e-12  Score=66.44  Aligned_cols=43  Identities=28%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|.+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            4 GSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCEEC--TTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CcCCCCCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555543

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.8e-12  Score=66.62  Aligned_cols=43  Identities=26%  Similarity=0.293  Sum_probs=25.7

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.+++||.|+.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            4 GSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSSEE--TTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCeEC--CCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345555666666  5566666666666666666666666666554

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.8e-12  Score=66.68  Aligned_cols=42  Identities=26%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      .+|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|++|
T Consensus         5 ~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            5 SSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCSEEC--SSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCCCCeEC--CcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555555  5555555555555555555555555555443

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.25  E-value=2.5e-12  Score=66.18  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=28.6

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+...|..|+++|.++++|.|..|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            4 GSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSBCC--SSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCccc--CccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455666666666  6666666666666666666666666666654

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.8e-12  Score=66.66  Aligned_cols=43  Identities=23%  Similarity=0.228  Sum_probs=25.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.+++||.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            4 GSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCCCSEEC--SSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ccccCCCcCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345555555666  5566666666666666666655555555544

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.6e-12  Score=66.83  Aligned_cols=43  Identities=23%  Similarity=0.310  Sum_probs=24.4

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|++|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            4 GSSGTGERPYIC--TVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSCCCSEEC--TTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCcCC--CCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.25  E-value=1.6e-11  Score=69.15  Aligned_cols=57  Identities=35%  Similarity=0.696  Sum_probs=50.8

Q ss_pred             hcCCCceeCcc--cccccCChHHHHHHHhhhCCCCceeCCc--CCccccCHHHHHHHHhhh
Q psy4404          63 HTGEKAFHCPH--CEYRCSQQSALYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        63 h~~~~~~~C~~--C~~~~~~~~~l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~  119 (151)
                      ....++|.|..  |++.|.....|..|++.|.+++||.|..  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34567899988  9999999999999999999999999965  999999999999998865

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.24  E-value=3.3e-12  Score=65.65  Aligned_cols=43  Identities=23%  Similarity=0.266  Sum_probs=23.2

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+...|..|+++|.++++|.|.+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            4 GSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSEEC--SSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCcCeEC--CccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=3.3e-12  Score=65.65  Aligned_cols=43  Identities=23%  Similarity=0.183  Sum_probs=23.2

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|.+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            4 GSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCSEEC--SSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCcCccC--CCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.2e-12  Score=65.75  Aligned_cols=43  Identities=26%  Similarity=0.297  Sum_probs=26.1

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|.+|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            4 GSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CSCCCCCSSCBC--SSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCeeC--cccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            445556666666  5666666666666666666666666666554

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.9e-12  Score=65.89  Aligned_cols=43  Identities=23%  Similarity=0.226  Sum_probs=22.8

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            4 GSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCSBCC--TTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCcCCCCCeEC--CCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555543

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=3.5e-12  Score=65.56  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=24.6

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            4 GSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCSEEC--SSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ccccCCCcCeEC--CCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            344555555655  5566666665556666555555555555544

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.2e-12  Score=66.32  Aligned_cols=42  Identities=21%  Similarity=0.211  Sum_probs=22.1

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      .+|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|+.|
T Consensus         5 ~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            5 SSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CSCCCCCSCBC--TTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             cccCCCCCeeC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555  5555555555555555555555555555443

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.4e-12  Score=66.20  Aligned_cols=43  Identities=21%  Similarity=0.193  Sum_probs=23.9

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|+.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            4 GSSGTGEKPFKC--DICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCSCCC--SSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCcCC--CcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.8e-12  Score=65.92  Aligned_cols=42  Identities=24%  Similarity=0.360  Sum_probs=23.4

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      .+|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|+.|
T Consensus         5 ~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            5 SSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCCCSEEE--TTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cCCCCCCCeeC--CCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44555555555  5555555555555555555555555555544

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2e-12  Score=66.51  Aligned_cols=43  Identities=26%  Similarity=0.374  Sum_probs=24.7

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            4 GSSGSGERPYGC--NECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCEEC--SSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCEEc--cccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            344555555666  5566666666666666555555555555544

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=2.2e-12  Score=66.33  Aligned_cols=43  Identities=28%  Similarity=0.353  Sum_probs=23.5

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.....|..|+++|.+++||.|.+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            4 GSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSSCCTTCC--TTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CcCCCCCcCcCC--CCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.5e-12  Score=66.08  Aligned_cols=43  Identities=23%  Similarity=0.211  Sum_probs=22.9

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.++++|.|+.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            4 GSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSEEC--TTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             cccCCCCCCeEC--CCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555443

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.6e-12  Score=66.00  Aligned_cols=43  Identities=16%  Similarity=0.095  Sum_probs=27.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.++++|.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            4 GSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSEEC--SSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cccCCCCCCeeC--CCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            445566666666  6666666666666666666666666666554

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.6e-12  Score=65.53  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=23.2

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|.+|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            4 GSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCSSCCCSCBC--SSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CcCcCCCCCcCC--CccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=4.2e-12  Score=65.25  Aligned_cols=43  Identities=16%  Similarity=0.045  Sum_probs=25.5

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.+++||.|..|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            4 GSSGSREKSHQC--RECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCEEC--TTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             ccccCCCCCEEc--cccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            445555566666  5566666666666666666666666665554

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=2.1e-12  Score=66.45  Aligned_cols=43  Identities=28%  Similarity=0.335  Sum_probs=29.1

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.+++||.|+.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            4 GSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSEEC--SSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCCCCCCCeEC--CcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455666666777  6677777777777777767766666666655

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.22  E-value=5e-12  Score=65.00  Aligned_cols=43  Identities=23%  Similarity=0.179  Sum_probs=23.4

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|..|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKC--SQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCSEEC--SSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344555555555  5555555555555555555555555555544

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.9e-12  Score=66.55  Aligned_cols=43  Identities=26%  Similarity=0.310  Sum_probs=27.8

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.+++||.|++|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            4 GSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEC--TTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455666666666  6666666666666666666666666666654

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2.8e-12  Score=65.91  Aligned_cols=43  Identities=26%  Similarity=0.295  Sum_probs=27.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|....+|..|+++|.+++||.|..|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            4 GSSGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCEEE--TTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCccCCCcCeEC--CCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            455666666666  6666666666666666666666666666554

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.4e-12  Score=65.59  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=18.6

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      .+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            5 SSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSCCCSEEC--SSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCeEC--CCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            33444444444  44444444444444444444444444444

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=4.9e-12  Score=64.99  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=25.1

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.....|..|+++|.++++|.|..|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            4 GSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCSEEC--SSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCcCC--CCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            345555556666  5566666666666666666655555655554

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=3.3e-12  Score=65.66  Aligned_cols=43  Identities=23%  Similarity=0.267  Sum_probs=26.9

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+...|..|+++|.++++|.|++|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            4 GSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSEEE--TTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CcCCCCCCCeEC--CCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            455566666666  6666666666666666666666666666554

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.21  E-value=4e-12  Score=67.70  Aligned_cols=49  Identities=27%  Similarity=0.494  Sum_probs=29.7

Q ss_pred             ccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccc
Q psy4404          77 RCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLS  125 (151)
Q Consensus        77 ~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  125 (151)
                      .|.....|..|++.|.+++||.|..|++.|.....|..|+++|+++++|
T Consensus         5 ~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            5 RAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            4444555555666666666666666666666666666666666665554

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=4.1e-12  Score=65.37  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.++++|.|+.|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            4 GSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSSSB--TTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CcCCCCCCCcCC--CCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455666666666  6666666666666666666666666666654

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=5.1e-12  Score=64.96  Aligned_cols=43  Identities=26%  Similarity=0.206  Sum_probs=27.6

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.+...|..|+++|.++++|.|.+|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            4 GSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSEEC--SSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCeEC--cccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            455666666666  6666666666666666666666666666654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=2.2e-11  Score=64.83  Aligned_cols=48  Identities=31%  Similarity=0.526  Sum_probs=30.6

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHH-hhcCCCceeCcccccccCC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIR-RHTGEKAFHCPHCEYRCSQ   80 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~C~~~~~~   80 (151)
                      ..+.++++|.|  +.|++.|.....|..|++ +|.++++|.|.+|++.|.+
T Consensus         5 ~~~~~~k~~~C--~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEEC--SSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCeEC--CCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            34556666666  666666666666666665 6666666666666666643

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.18  E-value=3e-11  Score=64.26  Aligned_cols=47  Identities=28%  Similarity=0.530  Sum_probs=40.8

Q ss_pred             hhcCCCceeCcccccccCChHHHHHHHh-hhCCCCceeCCcCCccccC
Q psy4404          62 RHTGEKAFHCPHCEYRCSQQSALYNHLK-RHTGEKPFKCTICSHKAAR  108 (151)
Q Consensus        62 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~-~h~~~~~~~C~~C~~~f~~  108 (151)
                      .|.++++|.|.+|++.|.....|..|++ +|.+++||.|.+|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4567788999999999999999999986 8999999999999998875

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=2e-11  Score=62.04  Aligned_cols=44  Identities=34%  Similarity=0.461  Sum_probs=41.2

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56788999999999999999999999999999999999999887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=8e-12  Score=64.40  Aligned_cols=43  Identities=28%  Similarity=0.270  Sum_probs=23.5

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHH-hhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIR-RHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~~~C~~C   74 (151)
                      +++|+++++|.|  +.|++.|.....|..|++ +|.+++||.|..|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            4 GSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCSBCC--SSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccCCCCCEEC--CccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            344555555555  555555555555555555 5555555555544

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.18  E-value=2.4e-11  Score=62.38  Aligned_cols=45  Identities=42%  Similarity=0.516  Sum_probs=42.2

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.2e-11  Score=63.59  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=23.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPH   73 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~   73 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.++++|.|+.
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            4 GSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCSEEC--SSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCEEC--CcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            344555555555  555555555555555555555555555543

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.17  E-value=8.4e-12  Score=66.43  Aligned_cols=51  Identities=22%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             CcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCce
Q psy4404          47 SYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPF   97 (151)
Q Consensus        47 ~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~   97 (151)
                      ++.|.+...|..|++.|.++++|.|..|++.|.....|..|+++|.+++||
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            355666667777777777777777777777777777777777777777665

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.5e-11  Score=62.30  Aligned_cols=45  Identities=29%  Similarity=0.443  Sum_probs=42.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.2e-11  Score=62.44  Aligned_cols=45  Identities=33%  Similarity=0.434  Sum_probs=42.2

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            467889999999999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.4e-11  Score=62.32  Aligned_cols=45  Identities=31%  Similarity=0.434  Sum_probs=42.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            377889999999999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.6e-11  Score=62.23  Aligned_cols=44  Identities=23%  Similarity=0.291  Sum_probs=41.7

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=3.7e-11  Score=61.36  Aligned_cols=43  Identities=26%  Similarity=0.428  Sum_probs=32.2

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCE   75 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~   75 (151)
                      ..|+++++|.|  +.|++.|.....|..|+++|+++++|.|+.|+
T Consensus         3 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEE--TTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcC--CCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            45677777777  77777777777777777777777777777764

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.8e-11  Score=62.05  Aligned_cols=45  Identities=29%  Similarity=0.468  Sum_probs=42.3

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      +|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.4e-11  Score=62.31  Aligned_cols=45  Identities=31%  Similarity=0.485  Sum_probs=42.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.16  E-value=2.8e-11  Score=62.09  Aligned_cols=45  Identities=38%  Similarity=0.488  Sum_probs=42.2

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.5e-11  Score=62.24  Aligned_cols=45  Identities=33%  Similarity=0.451  Sum_probs=42.2

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            467889999999999999999999999999999999999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.3e-11  Score=62.42  Aligned_cols=45  Identities=33%  Similarity=0.453  Sum_probs=42.1

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            377889999999999999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.8e-11  Score=62.09  Aligned_cols=45  Identities=33%  Similarity=0.382  Sum_probs=42.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.16  E-value=2.9e-11  Score=62.06  Aligned_cols=45  Identities=36%  Similarity=0.507  Sum_probs=42.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      +|+++|.++++|.|.+|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.16  E-value=2.6e-11  Score=62.23  Aligned_cols=45  Identities=33%  Similarity=0.453  Sum_probs=42.3

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            477889999999999999999999999999999999999999987

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.16  E-value=1.5e-11  Score=61.81  Aligned_cols=37  Identities=24%  Similarity=0.440  Sum_probs=15.2

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      |+++++|.|  +.|++.|.+...|..|+++|.++++|.|
T Consensus         5 H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            5 SSGENPYEC--SECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             SSSCCSEEC--SSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCccC--CCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            333444444  3444444444444444444444444333

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.7e-11  Score=62.13  Aligned_cols=45  Identities=33%  Similarity=0.475  Sum_probs=42.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      +|+++|.++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.7e-11  Score=62.13  Aligned_cols=45  Identities=36%  Similarity=0.470  Sum_probs=42.3

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.8e-11  Score=62.11  Aligned_cols=45  Identities=29%  Similarity=0.431  Sum_probs=42.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.16  E-value=2.5e-11  Score=62.25  Aligned_cols=45  Identities=31%  Similarity=0.416  Sum_probs=42.3

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.3e-11  Score=61.80  Aligned_cols=45  Identities=24%  Similarity=0.430  Sum_probs=42.3

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=4.3e-11  Score=61.37  Aligned_cols=44  Identities=27%  Similarity=0.348  Sum_probs=41.6

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.3e-11  Score=61.74  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=42.1

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.5e-11  Score=61.69  Aligned_cols=45  Identities=29%  Similarity=0.413  Sum_probs=42.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.6e-11  Score=62.21  Aligned_cols=45  Identities=36%  Similarity=0.469  Sum_probs=42.0

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            377889999999999999999999999999999999999999887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=2.8e-11  Score=62.05  Aligned_cols=44  Identities=34%  Similarity=0.483  Sum_probs=41.7

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999999999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.6e-11  Score=61.61  Aligned_cols=45  Identities=31%  Similarity=0.392  Sum_probs=42.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      +|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.1e-11  Score=61.89  Aligned_cols=45  Identities=36%  Similarity=0.512  Sum_probs=42.3

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.15  E-value=3.3e-11  Score=61.78  Aligned_cols=45  Identities=31%  Similarity=0.471  Sum_probs=42.3

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            377889999999999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.1e-11  Score=61.91  Aligned_cols=45  Identities=33%  Similarity=0.394  Sum_probs=42.2

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.2e-11  Score=61.83  Aligned_cols=45  Identities=33%  Similarity=0.461  Sum_probs=42.3

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.1e-11  Score=61.94  Aligned_cols=44  Identities=27%  Similarity=0.436  Sum_probs=41.7

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=3.9e-11  Score=61.53  Aligned_cols=45  Identities=22%  Similarity=0.211  Sum_probs=42.2

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.9e-11  Score=62.02  Aligned_cols=44  Identities=36%  Similarity=0.487  Sum_probs=41.7

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999999999999999999999999999999999999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.4e-11  Score=61.73  Aligned_cols=45  Identities=36%  Similarity=0.501  Sum_probs=42.2

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.7e-11  Score=62.13  Aligned_cols=44  Identities=32%  Similarity=0.500  Sum_probs=41.6

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999999999999999999999999999999999999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.5e-11  Score=61.68  Aligned_cols=45  Identities=31%  Similarity=0.406  Sum_probs=42.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      +|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.1e-11  Score=61.90  Aligned_cols=45  Identities=33%  Similarity=0.426  Sum_probs=41.9

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999987

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.14  E-value=2.6e-11  Score=60.93  Aligned_cols=40  Identities=25%  Similarity=0.496  Sum_probs=23.1

Q ss_pred             HhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          88 LKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        88 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      +++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            3455555566666666666666666666666655555543

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.1e-11  Score=61.94  Aligned_cols=45  Identities=27%  Similarity=0.367  Sum_probs=42.0

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      +|+++|.++++|.|.+|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.6e-11  Score=62.17  Aligned_cols=45  Identities=36%  Similarity=0.495  Sum_probs=42.0

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.6e-11  Score=61.67  Aligned_cols=45  Identities=38%  Similarity=0.555  Sum_probs=42.5

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478889999999999999999999999999999999999999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.7e-11  Score=62.14  Aligned_cols=44  Identities=32%  Similarity=0.440  Sum_probs=41.4

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|.+|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            67889999999999999999999999999999999999999887

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.8e-11  Score=62.02  Aligned_cols=45  Identities=38%  Similarity=0.498  Sum_probs=42.2

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.1e-11  Score=61.85  Aligned_cols=45  Identities=33%  Similarity=0.403  Sum_probs=42.1

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      +|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.9e-11  Score=61.52  Aligned_cols=44  Identities=32%  Similarity=0.520  Sum_probs=41.6

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.14  E-value=4.4e-11  Score=61.33  Aligned_cols=44  Identities=27%  Similarity=0.384  Sum_probs=41.6

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67789999999999999999999999999999999999999887

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.7e-11  Score=62.95  Aligned_cols=40  Identities=30%  Similarity=0.419  Sum_probs=19.6

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      ..|+++++|.|  +.|++.|.+...|..|+++|.+++||.|+
T Consensus         5 ~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            5 SSGTGEKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSEEC--SSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCcCeEC--CCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            34444445555  44555555555555555555444444443

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=2e-11  Score=62.64  Aligned_cols=41  Identities=27%  Similarity=0.278  Sum_probs=22.8

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.+++||.|+
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            4 GSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSEEC--SSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             ccccCCCcCcCC--CCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344555555555  55555555555555555555555555554

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=3.8e-11  Score=61.53  Aligned_cols=45  Identities=29%  Similarity=0.299  Sum_probs=42.0

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999887

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1.8e-11  Score=62.77  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=20.0

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      ..|+++++|.|  +.|++.|.+...|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            5 SSGTGEKPYKC--NECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCEEC--TTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CCCCCCCCeec--cccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            34444455555  44555555555555555555555554443

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.13  E-value=2.2e-11  Score=62.49  Aligned_cols=40  Identities=28%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      .+|+++++|.|  +.|++.|.....|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            5 SSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSEEC--SSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCEEC--CCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44445555555  45555555555555555555555555443

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.4e-11  Score=61.05  Aligned_cols=37  Identities=16%  Similarity=0.329  Sum_probs=16.3

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      |+++++|.|  +.|++.|.+...|..|+++|.++++|.|
T Consensus         5 H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            5 SSGEKPYSC--AECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SCSCCSCBC--TTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             cCCCCCeEC--CCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            344444444  4444444444444444444444444433

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.1e-11  Score=60.61  Aligned_cols=40  Identities=20%  Similarity=0.454  Sum_probs=23.0

Q ss_pred             HhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          88 LKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        88 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      +++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3445555566666666666666666666665555555543

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.3e-11  Score=62.45  Aligned_cols=40  Identities=28%  Similarity=0.350  Sum_probs=18.6

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      .+|+++++|.|  +.|++.|.....|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            5 SSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCCCEEC--SSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cCcCCCCCeEC--CcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444444444  44444444444444444444444444443

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.9e-11  Score=62.67  Aligned_cols=40  Identities=33%  Similarity=0.475  Sum_probs=19.1

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      .+|+++++|.|  +.|++.|....+|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            5 SSGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCSEEC--SSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCcCEEC--CCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            34444444444  44554454444444444444444444443

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.8e-11  Score=62.82  Aligned_cols=39  Identities=31%  Similarity=0.449  Sum_probs=18.4

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      ..|+++++|.|  +.|++.|.+...|..|+++|.+++||.|
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eq2_A            5 SSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGP   43 (46)
T ss_dssp             CSSSSSCSSSC--CSSCCCCSSHHHHHHHGGGGCCCCCCCC
T ss_pred             cccCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCC
Confidence            33444444444  4444444444444444444444444444

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=1.7e-11  Score=62.91  Aligned_cols=40  Identities=30%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      .+|+++++|.|  +.|++.|.....|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            5 SSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCBC--SSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             cCCCCCcCeEC--CCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            34444455555  44555555555555555555544444443

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.1e-11  Score=62.55  Aligned_cols=38  Identities=26%  Similarity=0.438  Sum_probs=17.7

Q ss_pred             CCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          32 RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        32 ~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +|+++++|.|  +.|++.|.+...|..|+++|.+++||.|
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yth_A            6 SGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSSBCC--SSSCCCBSSHHHHHHHGGGGTTCCCSSC
T ss_pred             CCCCCcCCCC--CCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            3444444444  4444444444444444444444444444

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.6e-11  Score=62.19  Aligned_cols=43  Identities=26%  Similarity=0.242  Sum_probs=25.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.++++|.|.+|
T Consensus         4 ~~~h~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEEC--SSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeC--cccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            345555556666  5566666666666666666655555555544

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.1e-11  Score=62.52  Aligned_cols=39  Identities=26%  Similarity=0.320  Sum_probs=17.8

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      ..|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2ep1_A            5 SSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGP   43 (46)
T ss_dssp             CCCSSCCSSCC--SSSCCCCSSHHHHHHHHGGGSSSCCCSS
T ss_pred             cCCCCCCCcCC--CCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            33444444444  4444444444444444444444444444

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=6.6e-11  Score=60.64  Aligned_cols=43  Identities=35%  Similarity=0.454  Sum_probs=39.6

Q ss_pred             HHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          60 IRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        60 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      +++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4678889999999999999999999999999999999999887

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.3e-11  Score=61.80  Aligned_cols=39  Identities=26%  Similarity=0.312  Sum_probs=18.5

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      .+|+++++|.|  +.|++.|.+...|..|+++|.++++|.|
T Consensus         5 ~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emi_A            5 SSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGP   43 (46)
T ss_dssp             CSCSSCCCEEC--SSSCCEESSHHHHHHHHGGGCSCCCCSC
T ss_pred             cccCCCCCCCC--CCCCcccCCHHHHHHHHhHhCCCCCCCC
Confidence            34444444444  4444444444444444444444444444

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=3.2e-11  Score=60.59  Aligned_cols=41  Identities=27%  Similarity=0.543  Sum_probs=28.4

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            44566677777777777777777777777777777766643

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=2.9e-11  Score=61.97  Aligned_cols=40  Identities=25%  Similarity=0.344  Sum_probs=18.7

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      ..|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            5 SSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCCSEEC--SSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCcCC--CCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            33444444444  44444444444444444444444444443

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.7e-11  Score=62.09  Aligned_cols=40  Identities=28%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      +.|+++++|.|  +.|++.|.....|..|+++|.+++||.|+
T Consensus         5 ~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            5 SSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSCCCSEEC--TTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             cCcCCCcCccC--CCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            34444445555  44555555555555555555544444443

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.9e-11  Score=62.03  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      .+|+++++|.|  +.|++.|.....|..|+++|.++++|.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            5 SSGTGENPFIC--SECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCSCCSCBC--TTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCEEC--CccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            44445555555  45555555555555555555555555443

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=1.9e-11  Score=62.70  Aligned_cols=39  Identities=31%  Similarity=0.407  Sum_probs=18.3

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      .+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|
T Consensus         5 ~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yti_A            5 SSGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGP   43 (46)
T ss_dssp             CCCSCCCTTCC--SSSCCCCSSHHHHHHHHTTTSCSCCSST
T ss_pred             cCCCCCcCeEC--CCCCcccCChhHHHHHhHhcCCCCCCCC
Confidence            33444444444  4444444444444444444444444444

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=6.6e-11  Score=61.29  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=27.3

Q ss_pred             CCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccc
Q psy4404          32 RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCE   75 (151)
Q Consensus        32 ~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~   75 (151)
                      .+.++++|.|  +.|++.|.+...|..|+++|.++++|.|.+|+
T Consensus         6 ~~~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~   47 (48)
T 2epr_A            6 SGRTRKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS   47 (48)
T ss_dssp             CCCCCCSEEE--TTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred             CCCCCcCeeC--CCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            4455666666  66666666666666666666666666666665

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.5e-11  Score=62.22  Aligned_cols=39  Identities=28%  Similarity=0.388  Sum_probs=18.3

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      .+|+++++|.|  +.|++.|....+|..|+++|.+++||.|
T Consensus         5 ~~H~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yrj_A            5 SSGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCCCEEC--SSSCCEESSHHHHHHHHTTTSSCCSSCS
T ss_pred             cCCCCCCCeEC--CCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            34444444444  4444444444444444444444444444

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=2.5e-11  Score=61.65  Aligned_cols=39  Identities=18%  Similarity=0.263  Sum_probs=20.3

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      .+|+++++|.|  +.|++.|.....|..|+++|.++++|.|
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            5 SSGAGENPFKC--SKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCCSCCCSEEC--SSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             cccCCCCCeEC--CCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            34455555555  5555555555555555555555555444

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.10  E-value=5.9e-11  Score=60.57  Aligned_cols=42  Identities=24%  Similarity=0.528  Sum_probs=31.6

Q ss_pred             hhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCC
Q psy4404          62 RHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICS  103 (151)
Q Consensus        62 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~  103 (151)
                      +|.++++|.|..|++.|.....|..|+++|.++++|.|+.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            466677777777777777777777777777777777777775

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=2.2e-11  Score=62.49  Aligned_cols=40  Identities=28%  Similarity=0.321  Sum_probs=20.6

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      .+|+++++|.|  +.|++.|.+...|..|+++|+++++|.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            5 SSGTGEKPYSC--NVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CCCSSCCSEEE--TTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccCCCCCCeEC--cccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            44445555555  45555555555555555555555555443

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.3e-11  Score=61.81  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      ++|+++++|.|  +.|++.|.....|..|+++|+++++|.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            5 SSGSGKKPYEC--KECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CSCCCSCSCCC--SSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCcCCCCCcCC--CCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34444445555  44555555555555555555544444443

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.3e-11  Score=61.84  Aligned_cols=40  Identities=33%  Similarity=0.409  Sum_probs=18.8

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      .+|+++++|.|  +.|++.|....+|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            5 SSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCCCBC--SSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             cccCCCCCeEC--CCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            33444444444  44444444444444444444444444443

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.8e-11  Score=60.89  Aligned_cols=41  Identities=32%  Similarity=0.464  Sum_probs=25.3

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            44555666666666666666666666666666666666554

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.10  E-value=4.9e-11  Score=59.85  Aligned_cols=40  Identities=20%  Similarity=0.374  Sum_probs=25.4

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCcccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS  126 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  126 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++|.
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~   41 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS   41 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCC
Confidence            3445666666666666666666666666666666666654

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=3.5e-11  Score=61.72  Aligned_cols=40  Identities=28%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      ..|+++++|.|  +.|++.|.....|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            5 SSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSCCSSCCCBC--TTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCEEC--CccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            34445555555  45555555555555555555555555443

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=6.2e-11  Score=60.74  Aligned_cols=45  Identities=36%  Similarity=0.559  Sum_probs=41.7

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      +|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477889999999999999999999999999999999999999865

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=3.7e-11  Score=60.38  Aligned_cols=41  Identities=29%  Similarity=0.546  Sum_probs=27.7

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            44566666777777777777777777777777776666543

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.9e-11  Score=60.78  Aligned_cols=44  Identities=32%  Similarity=0.482  Sum_probs=41.4

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHh-hhCCCCceeCCcC
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLK-RHTGEKPFKCTIC  102 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~-~h~~~~~~~C~~C  102 (151)
                      |+++|.++++|.|..|++.|.....|..|++ +|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            6788999999999999999999999999999 9999999999887

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.8e-11  Score=60.21  Aligned_cols=41  Identities=24%  Similarity=0.400  Sum_probs=23.4

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            44455555556666666666666666666555555555543

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3.2e-11  Score=61.92  Aligned_cols=38  Identities=26%  Similarity=0.347  Sum_probs=16.3

Q ss_pred             CCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          32 RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        32 ~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +|+++++|.|  +.|++.|.....|..|+++|.++++|.|
T Consensus         6 ~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eon_A            6 SGTGEKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGP   43 (46)
T ss_dssp             SCSSCCSCBC--SSSCCBCSSHHHHHHHTTTTTSCCSCTT
T ss_pred             CCCCCcccCC--CCCCcccCcHHHHHHHHHhcCCCCCCCC
Confidence            3344444444  4444444444444444444444444443

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=1e-10  Score=59.90  Aligned_cols=45  Identities=36%  Similarity=0.507  Sum_probs=41.7

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367889999999999999999999999999999999999999864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=3e-11  Score=60.64  Aligned_cols=40  Identities=25%  Similarity=0.532  Sum_probs=24.1

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCcccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS  126 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  126 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++|.
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS   41 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            4455556666666666666666666666666666655554

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=3.5e-11  Score=61.72  Aligned_cols=40  Identities=25%  Similarity=0.312  Sum_probs=19.2

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      ++|+++++|.|  +.|++.|.....|..|+++|.+++||.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            5 SSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCC--TTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccCCCCCeEC--CcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34444444544  44555555544455554444444444443

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.08  E-value=7.6e-12  Score=68.61  Aligned_cols=48  Identities=13%  Similarity=0.269  Sum_probs=29.1

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChH
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQS   82 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~   82 (151)
                      +.+|+++++|.|  +.|++.|.+...|.   ++|.++++|.|..|++.|....
T Consensus         6 ~~~H~~~k~~~C--~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~   53 (62)
T 1vd4_A            6 ERDSTNRASFKC--PVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDE   53 (62)
T ss_dssp             SSSCCSSSEEEC--SSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECT
T ss_pred             HHHcCCCCCccC--CCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCc
Confidence            455666666666  66666666655554   5566666666666666665443

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.08  E-value=1.3e-10  Score=60.14  Aligned_cols=43  Identities=26%  Similarity=0.358  Sum_probs=37.2

Q ss_pred             hhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCc
Q psy4404          62 RHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSH  104 (151)
Q Consensus        62 ~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~  104 (151)
                      .+.++++|.|.+|++.|.....|..|+++|.+++||.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            3566788999999999999999999999999999999999875

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5e-11  Score=60.43  Aligned_cols=41  Identities=22%  Similarity=0.296  Sum_probs=23.4

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            44455555556666666666666666666655555555543

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=2.9e-11  Score=62.03  Aligned_cols=43  Identities=23%  Similarity=0.237  Sum_probs=26.6

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      ++.|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|++|
T Consensus         4 ~~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCC--SSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeC--CCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345566666666  6666666666666666666666666666554

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.7e-11  Score=60.63  Aligned_cols=43  Identities=30%  Similarity=0.395  Sum_probs=40.2

Q ss_pred             HHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          60 IRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        60 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      +++|.++++|.|.+|++.|.....|..|+++|.+++||.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4678899999999999999999999999999999999999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=3.4e-11  Score=61.12  Aligned_cols=39  Identities=21%  Similarity=0.359  Sum_probs=19.1

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      .+|+++++|.|  +.|++.|.....|..|+++|.++++|.|
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            5 SSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             CSSSSCCSCEE--TTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             cccCCCcCeeC--CCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            34444445555  4455555555555555555544444444

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.7e-11  Score=60.95  Aligned_cols=40  Identities=28%  Similarity=0.512  Sum_probs=22.6

Q ss_pred             HhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          88 LKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        88 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      +++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP   43 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTT
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCC
Confidence            4455555555555555555555555555555555555544

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=7.6e-11  Score=59.82  Aligned_cols=41  Identities=15%  Similarity=0.254  Sum_probs=23.3

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            44455555556665566666655666666555555555543

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=5.3e-11  Score=61.03  Aligned_cols=41  Identities=24%  Similarity=0.310  Sum_probs=24.9

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      +..|+++++|.|  +.|++.|.....|..|+++|.++++|.|+
T Consensus         4 ~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            4 GSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSCBC--TTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCcCCCCCcCC--CCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445556666666  56666666666666666666666666554

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=9.5e-11  Score=59.50  Aligned_cols=40  Identities=23%  Similarity=0.354  Sum_probs=25.4

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCcccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS  126 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  126 (151)
                      |+++|.+++||.|.+|++.|.....|..|+++|+++++|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            4555666666666666666666666666666666666554

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=6.5e-11  Score=60.70  Aligned_cols=41  Identities=32%  Similarity=0.611  Sum_probs=26.3

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP   43 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCS
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            45556666666666666666666666666666666666655

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.7e-10  Score=59.05  Aligned_cols=44  Identities=30%  Similarity=0.486  Sum_probs=40.9

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999874

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=4e-11  Score=61.44  Aligned_cols=40  Identities=23%  Similarity=0.289  Sum_probs=20.1

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      .+|+++++|.|  +.|++.|.....|..|+++|.++++|.|+
T Consensus         5 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            5 SSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CSSCCCCSSEE--TTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cCCCCCCCeEC--CCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            34444555555  44555555555555555555555554443

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=5.6e-11  Score=60.94  Aligned_cols=41  Identities=24%  Similarity=0.230  Sum_probs=23.8

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcC-CCceeCc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTG-EKAFHCP   72 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~-~~~~~C~   72 (151)
                      +++|+++++|.|  +.|++.|....+|..|+++|.+ +++|.|+
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            4 GSSGQKEKCFKC--NKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCSCCEEC--SSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             ccccCCCCCEEC--cCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            445555556666  5566666666666666666655 5555554

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.04  E-value=1.9e-10  Score=58.88  Aligned_cols=44  Identities=39%  Similarity=0.519  Sum_probs=40.9

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788999999999999999999999999999999999999874

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=3.1e-11  Score=61.32  Aligned_cols=40  Identities=25%  Similarity=0.284  Sum_probs=25.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.+++||.|
T Consensus         4 ~~~H~~~~~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            4 GSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCEEE--TTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CcCCCCCCCeEC--cccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            445566666666  6666666666666666666666666555

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=6.6e-11  Score=60.64  Aligned_cols=41  Identities=29%  Similarity=0.458  Sum_probs=26.1

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++++|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            45556666666666666666666666666666666666554

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.2e-10  Score=59.07  Aligned_cols=40  Identities=13%  Similarity=0.147  Sum_probs=23.9

Q ss_pred             HhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          88 LKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        88 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      +++|.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            4455556666666666666666666666666666555544

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=2.4e-10  Score=58.44  Aligned_cols=44  Identities=36%  Similarity=0.532  Sum_probs=40.9

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788999999999999999999999999999999999999874

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.1e-10  Score=59.20  Aligned_cols=40  Identities=20%  Similarity=0.172  Sum_probs=24.6

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.+++||.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            4 GSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCSEEC--SSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CcccCCCcCeEC--CCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            455566666666  6666666666666666666666665544

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=3.2e-10  Score=57.21  Aligned_cols=40  Identities=15%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      +.|+++++|.|  +.|++.|....+|..|+++|+++++|.|+
T Consensus         3 ~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFC--NECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCC--SSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEEC--CCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            45666777777  77777777777777777777777777765

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.5e-10  Score=58.35  Aligned_cols=44  Identities=32%  Similarity=0.469  Sum_probs=40.9

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            47788999999999999999999999999999999999999874

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.1e-10  Score=58.70  Aligned_cols=44  Identities=36%  Similarity=0.486  Sum_probs=40.5

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=2.2e-10  Score=58.67  Aligned_cols=44  Identities=32%  Similarity=0.514  Sum_probs=40.5

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999874

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.02  E-value=4e-10  Score=56.38  Aligned_cols=40  Identities=13%  Similarity=0.197  Sum_probs=28.9

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +.+|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|
T Consensus         3 ~~~H~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            3 SGSSGGETPYLC--GQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSCCCSSCCEEC--SSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CccCCCCCCeEC--CCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            456677777777  7777777777777777777777777665

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3e-10  Score=58.55  Aligned_cols=45  Identities=24%  Similarity=0.383  Sum_probs=30.5

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHC   74 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C   74 (151)
                      .++|+++++|.|.++.|++.|.....|..|+++|.++++|.|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455667777777222677777777777777777777777777665

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.3e-10  Score=58.57  Aligned_cols=44  Identities=32%  Similarity=0.477  Sum_probs=40.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999874

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.4e-10  Score=58.47  Aligned_cols=44  Identities=34%  Similarity=0.507  Sum_probs=40.9

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            37788999999999999999999999999999999999999874

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.4e-10  Score=58.44  Aligned_cols=44  Identities=36%  Similarity=0.486  Sum_probs=40.6

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            46788999999999999999999999999999999999999874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.6e-10  Score=58.36  Aligned_cols=43  Identities=26%  Similarity=0.411  Sum_probs=40.1

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6788999999999999999999999999999999999999873

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=3e-10  Score=58.08  Aligned_cols=44  Identities=32%  Similarity=0.472  Sum_probs=40.6

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999863

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.5e-10  Score=58.42  Aligned_cols=44  Identities=36%  Similarity=0.499  Sum_probs=40.8

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            47788999999999999999999999999999999999999874

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.5e-10  Score=56.67  Aligned_cols=40  Identities=23%  Similarity=0.352  Sum_probs=30.2

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|
T Consensus         3 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEEC--TTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCCCCEeC--CCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            556777777777  7778777777777777777777777765

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=4.3e-10  Score=57.54  Aligned_cols=43  Identities=33%  Similarity=0.530  Sum_probs=39.2

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      |+++|.++++|.|.+|++.|.....|..|+++|.+++||.|..
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5678889999999999999999999999999999999999863

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.1e-10  Score=58.07  Aligned_cols=44  Identities=34%  Similarity=0.504  Sum_probs=40.7

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999874

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.6e-10  Score=58.28  Aligned_cols=44  Identities=36%  Similarity=0.557  Sum_probs=40.5

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46788999999999999999999999999999999999999874

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.1e-10  Score=58.07  Aligned_cols=44  Identities=27%  Similarity=0.332  Sum_probs=40.8

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      +|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788999999999999999999999999999999999999873

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.1e-10  Score=58.05  Aligned_cols=44  Identities=39%  Similarity=0.583  Sum_probs=40.7

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47788999999999999999999999999999999999999874

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.6e-10  Score=59.64  Aligned_cols=42  Identities=36%  Similarity=0.606  Sum_probs=26.4

Q ss_pred             HhhcCCCceeCc--ccccccCChHHHHHHHhhhCCCCceeCCcC
Q psy4404          61 RRHTGEKAFHCP--HCEYRCSQQSALYNHLKRHTGEKPFKCTIC  102 (151)
Q Consensus        61 ~~h~~~~~~~C~--~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C  102 (151)
                      ++|.++++|.|.  .|++.|.....|..|+++|.+++||.|..|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455566666665  566666666666666666666666666554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=3.1e-10  Score=58.02  Aligned_cols=44  Identities=32%  Similarity=0.472  Sum_probs=40.9

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      +|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788999999999999999999999999999999999999874

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3e-10  Score=58.15  Aligned_cols=44  Identities=36%  Similarity=0.500  Sum_probs=40.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999874

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.4e-10  Score=58.48  Aligned_cols=44  Identities=36%  Similarity=0.477  Sum_probs=40.5

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|.+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999874

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.7e-10  Score=57.76  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=28.5

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            4 GSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCSCCCEEC--SSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             ccccCCCCCEEC--cccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            455666777777  66777777777777777777777776665

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.7e-10  Score=57.13  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=26.4

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +.+|+++++|.|  +.|++.|.+..+|..|+++|.++++|.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            4 GSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             SSCCSCCCSEEC--TTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             ccCCCCCCCeEC--CCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            445666666666  6666666666666666666666666665

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=3.4e-10  Score=57.87  Aligned_cols=44  Identities=34%  Similarity=0.520  Sum_probs=40.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36788999999999999999999999999999999999999873

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.4e-10  Score=59.16  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=23.4

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      ..|+++++|.|  +.|++.|.....|..|+++|.++++|.|+
T Consensus         5 ~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            5 SSGTGQKPFEC--THCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCSCCSEEE--TTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCcCccC--CCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            44555555666  55666666666666666666555555554

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.99  E-value=3.6e-11  Score=65.83  Aligned_cols=52  Identities=21%  Similarity=0.445  Sum_probs=45.3

Q ss_pred             HHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHH
Q psy4404          57 RRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDH  111 (151)
Q Consensus        57 ~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~  111 (151)
                      ..|+++|.+++||.|+.|++.|.....|.   +.|.+++||.|..|++.|.....
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            45778899999999999999999888775   78999999999999999986543

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=4.6e-10  Score=57.13  Aligned_cols=42  Identities=33%  Similarity=0.505  Sum_probs=37.7

Q ss_pred             HHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          60 IRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        60 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .++|.++++|.|..|++.|.....|..|+++|.+++||.|++
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            456888899999999999999999999999999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=3.7e-10  Score=56.27  Aligned_cols=37  Identities=19%  Similarity=0.461  Sum_probs=23.3

Q ss_pred             hhCCCCceeCCcCCccccCHHHHHHHHhhhcCCcccc
Q psy4404          90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS  126 (151)
Q Consensus        90 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  126 (151)
                      +|.+++||.|..|++.|.....|..|+++|+++++|.
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS   40 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcC
Confidence            4556666666666666666666666666666666554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=4.5e-10  Score=56.85  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=39.7

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT  100 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  100 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            3678899999999999999999999999999999999999884

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.6e-10  Score=57.80  Aligned_cols=44  Identities=34%  Similarity=0.465  Sum_probs=40.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788999999999999999999999999999999999999863

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.8e-10  Score=58.30  Aligned_cols=40  Identities=25%  Similarity=0.251  Sum_probs=20.2

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      ..|+++++|.|  +.|++.|.+..+|..|+++|.+++||.|.
T Consensus         5 ~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCC--SSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCcCC--CCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            34444555555  45555555555555555555555555443

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=6.6e-10  Score=56.84  Aligned_cols=42  Identities=31%  Similarity=0.436  Sum_probs=38.7

Q ss_pred             HHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          60 IRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        60 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      +++|.++++|.|..|++.|.....|..|+++|.+++||.|.+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            467889999999999999999999999999999999999863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3e-10  Score=57.48  Aligned_cols=43  Identities=26%  Similarity=0.416  Sum_probs=39.8

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT  100 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  100 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3778899999999999999999999999999999999999884

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=57.22  Aligned_cols=40  Identities=28%  Similarity=0.338  Sum_probs=25.8

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.++++|.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            4 GSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             CCCSSSSSSSCC--TTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CcCCCCCcCeEC--CCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            445666666666  6666666666666666666666666665

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=3.8e-10  Score=56.92  Aligned_cols=37  Identities=22%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             hCCCCceeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          91 HTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        91 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      |.+++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            4455555555555555555555555555555555544

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=3.8e-10  Score=56.54  Aligned_cols=40  Identities=20%  Similarity=0.349  Sum_probs=26.8

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      ..+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|
T Consensus         3 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCC--SSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CcccCCCCCEEC--CCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            455666667777  6677777777777777766666666654

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.3e-10  Score=56.71  Aligned_cols=40  Identities=23%  Similarity=0.333  Sum_probs=27.4

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +.+|+++++|.|  +.|++.|.+...|..|+++|.+++||.|
T Consensus         3 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCC--TTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccccCCCCCeeC--CCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            455666677777  6677777777777777777776666655

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4.8e-10  Score=57.33  Aligned_cols=43  Identities=28%  Similarity=0.274  Sum_probs=39.2

Q ss_pred             HHHhhcCCCceeCcccccccCChHHHHHHHhhhCC-CCceeCCc
Q psy4404          59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTG-EKPFKCTI  101 (151)
Q Consensus        59 h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~-~~~~~C~~  101 (151)
                      |+++|.++++|.|..|++.|.....|..|+++|.+ ++||.|.+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67788999999999999999999999999999999 99999863

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=4.5e-10  Score=56.84  Aligned_cols=40  Identities=20%  Similarity=0.340  Sum_probs=26.0

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      +..|+++++|.|  +.|++.|.....|..|+++|.++++|.|
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            4 GSSGHTRKRYEC--SKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CSCCCCCSSEEC--TTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             ccccCCCCCeEC--CCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            455666666666  6666666666666666666666666655

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.6e-11  Score=69.01  Aligned_cols=60  Identities=18%  Similarity=0.218  Sum_probs=34.2

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE   94 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~   94 (151)
                      ..++.+.+++.|  +.|++.|. ...|..|+ .+.+++++.|+.|++.|.. ..|..|+.+++++
T Consensus         9 ~~~~c~~r~~~C--~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~   68 (75)
T 2d9k_A            9 EETECPLRLAVC--QHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCCCCCCCEEC--SSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHHBTTB
T ss_pred             CcccCCCcccCC--cccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHHccCC
Confidence            445556666666  55666663 55566665 5555566666666665543 4455565555543

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.7e-10  Score=58.29  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      +.+|+++++|.|  +.|++.|.....|..|+++|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C--~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            4 GSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSCCCCSEEC--SSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccCCCCCeeC--cccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            456777777777  77777777777777777777777777764

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=8.6e-10  Score=55.82  Aligned_cols=40  Identities=23%  Similarity=0.230  Sum_probs=27.9

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      ..+|.++++|.|  +.|++.|.....|..|+++|.++++|.|
T Consensus         4 ~~~h~~~~~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            4 GSSGAAKTTSEC--QECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCSCSSSCCCCC--TTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCCCcCeEC--CCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            455666677777  6777777777777777777777766666

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=7.6e-10  Score=55.11  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=25.9

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC   71 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C   71 (151)
                      .+|+++++|.|  +.|++.|.....|..|+++|.+++||.|
T Consensus         3 ~~h~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEEC--SSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeEC--CCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            44566666777  6677777777777777666666666655

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.1e-10  Score=57.16  Aligned_cols=44  Identities=34%  Similarity=0.482  Sum_probs=40.4

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCc
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTI  101 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~  101 (151)
                      .|+++|.++++|.|..|++.|.....|..|+++|.+++||.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            47788999999999999999999999999999999999999863

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.9e-10  Score=56.40  Aligned_cols=43  Identities=21%  Similarity=0.254  Sum_probs=39.7

Q ss_pred             HHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCC
Q psy4404          58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCT  100 (151)
Q Consensus        58 ~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~  100 (151)
                      .|+++|.++++|.|.+|++.|.....|..|+++|.+++||.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3678899999999999999999999999999999999999874

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5.1e-10  Score=57.24  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=28.3

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      +.+|.++++|.|  +.|++.|....+|..|+++|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            4 GSSGSGERPFKC--NECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CSCSSCCCSCCC--SSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CcCCCCCCCeEC--CCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455666677777  66777777777777777777766666665

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=1.5e-09  Score=59.97  Aligned_cols=43  Identities=16%  Similarity=0.182  Sum_probs=30.4

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHH-HhhcCCCceeCcc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHI-RRHTGEKAFHCPH   73 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~-~~h~~~~~~~C~~   73 (151)
                      ...++++||.|.++.|++.|.+.++|..|+ ++|++++|+.|..
T Consensus        20 ~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           20 TRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            455677777774445777777777777776 5777777777754

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.90  E-value=9.8e-10  Score=53.36  Aligned_cols=36  Identities=31%  Similarity=0.558  Sum_probs=29.2

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      |+++|.+++||.|..|++.|.....|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            566788888888888888888888888888887653

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=9.8e-10  Score=53.36  Aligned_cols=36  Identities=14%  Similarity=0.445  Sum_probs=28.5

Q ss_pred             hhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCcc
Q psy4404          89 KRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNADL  124 (151)
Q Consensus        89 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  124 (151)
                      ++|.+++||.|..|++.|.....|..|+++|+++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            457778888888888888888888888888877653

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.85  E-value=2.7e-09  Score=52.46  Aligned_cols=36  Identities=8%  Similarity=0.328  Sum_probs=25.0

Q ss_pred             hCCCCceeCCcCCccccCHHHHHHHHhhhcCCcccc
Q psy4404          91 HTGEKPFKCTICSHKAARKDHMKRHLQLKHNADLSS  126 (151)
Q Consensus        91 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~  126 (151)
                      |.+++||.|..|++.|.....|..|+++|+++++|.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            345667777777777777777777777777776664

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.84  E-value=3.4e-09  Score=50.63  Aligned_cols=34  Identities=21%  Similarity=0.497  Sum_probs=27.2

Q ss_pred             hCCCCceeCCcCCccccCHHHHHHHHhhhcCCcc
Q psy4404          91 HTGEKPFKCTICSHKAARKDHMKRHLQLKHNADL  124 (151)
Q Consensus        91 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  124 (151)
                      |.+++||.|..|++.|.....|..|+++|+++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5677888888888888888888888888877653

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.84  E-value=3.8e-09  Score=50.52  Aligned_cols=34  Identities=29%  Similarity=0.635  Sum_probs=27.3

Q ss_pred             hCCCCceeCCcCCccccCHHHHHHHHhhhcCCcc
Q psy4404          91 HTGEKPFKCTICSHKAARKDHMKRHLQLKHNADL  124 (151)
Q Consensus        91 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~  124 (151)
                      |.+++||.|..|++.|.....|..|+++|+++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5677888888888888888888888888877653

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=6.9e-10  Score=63.04  Aligned_cols=67  Identities=18%  Similarity=0.278  Sum_probs=58.3

Q ss_pred             hHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCCc
Q psy4404          54 DHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNAD  123 (151)
Q Consensus        54 ~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  123 (151)
                      ..|..|++.+.+.+++.|..|+..|. ...|..|+ .+.+++||.|..|++.|. ...|..|++++.++.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            34667888889999999999999995 88899999 899999999999999877 489999999887653

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=6e-09  Score=51.16  Aligned_cols=33  Identities=18%  Similarity=0.391  Sum_probs=27.5

Q ss_pred             hhCCCCceeCCc--CCccccCHHHHHHHHhhhcCC
Q psy4404          90 RHTGEKPFKCTI--CSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        90 ~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      .+.+++||.|..  |++.|.....|..|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            356788899976  999999999999999988865

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=6.1e-10  Score=65.23  Aligned_cols=58  Identities=17%  Similarity=0.272  Sum_probs=44.7

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTG   93 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~   93 (151)
                      ..+|+++++|.|  +.|++.|....+|..|+++|.+++||.|..+.    ....|..|++.|.+
T Consensus        17 ~~~H~~~kpy~C--~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQC--KHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEEC--SSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcC--CCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            456788888999  88999999988899998888888888887654    33345566666666

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=8.7e-09  Score=56.91  Aligned_cols=40  Identities=10%  Similarity=0.252  Sum_probs=29.7

Q ss_pred             hCCCCceeCCc--CCccccCHHHHHHHH-hhhcCCcccccccC
Q psy4404          91 HTGEKPFKCTI--CSHKAARKDHMKRHL-QLKHNADLSSMIKL  130 (151)
Q Consensus        91 h~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~~~~~~~~~~~~  130 (151)
                      .++++||.|..  |++.|.....|..|+ ++|++++|+.+...
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~   64 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEV   64 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccc
Confidence            46778888854  888888888888886 57888888777544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.72  E-value=1.2e-08  Score=48.19  Aligned_cols=31  Identities=26%  Similarity=0.573  Sum_probs=21.2

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCCccc
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNADLS  125 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  125 (151)
                      +||.|.+|++.|.....|..|+++|+++++|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            3566777777777777777777777666655

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=1.6e-08  Score=48.55  Aligned_cols=33  Identities=30%  Similarity=0.569  Sum_probs=27.1

Q ss_pred             hhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        90 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            467788888888888888888888888888765

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.71  E-value=1.6e-08  Score=49.17  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=28.1

Q ss_pred             hCCCCceeCC--cCCccccCHHHHHHHHhhhcCCccc
Q psy4404          91 HTGEKPFKCT--ICSHKAARKDHMKRHLQLKHNADLS  125 (151)
Q Consensus        91 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~  125 (151)
                      |.+++||.|.  .|++.|.....|..|+++|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4567888888  5888888888888888888887765

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=8.1e-09  Score=50.12  Aligned_cols=33  Identities=24%  Similarity=0.503  Sum_probs=26.9

Q ss_pred             hhhCCCCceeCCcCCccccCHHHHHHH-HhhhcC
Q psy4404          89 KRHTGEKPFKCTICSHKAARKDHMKRH-LQLKHN  121 (151)
Q Consensus        89 ~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~  121 (151)
                      ++|.+++||.|..|++.|.....|..| +++|++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            457788888888888888888888888 777765

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.70  E-value=1e-08  Score=50.26  Aligned_cols=35  Identities=17%  Similarity=0.294  Sum_probs=18.9

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhcCCCcee
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFH   70 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~   70 (151)
                      +++++|.|  +.|++.|.....|..|+++|.++++|.
T Consensus         2 ~~~k~~~C--~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            2 WPPRSYTC--SFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CCSSSEEC--TTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCceEC--CCCCcccCCHHHHHHHHHHcCCCccce
Confidence            34455555  555555555555555555555555443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.8e-08  Score=48.64  Aligned_cols=36  Identities=19%  Similarity=0.373  Sum_probs=26.7

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCc
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKA   68 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~   68 (151)
                      ..|+++++|.|  +.|++.|....+|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSC--PVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEE--TTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCC--CCCCCccCCHHHHHHHHHHHcCCCC
Confidence            35677777888  7788888888888888877776653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.4e-08  Score=48.85  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=26.8

Q ss_pred             hhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        90 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            466778888888888888888888888888764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=1.4e-08  Score=48.75  Aligned_cols=33  Identities=27%  Similarity=0.644  Sum_probs=26.4

Q ss_pred             hhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        90 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            467778888888888888888888888887764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=1.3e-08  Score=49.27  Aligned_cols=33  Identities=15%  Similarity=0.453  Sum_probs=27.0

Q ss_pred             hhCCCCceeCCcCCccccCH-HHHHHHHhhhcCC
Q psy4404          90 RHTGEKPFKCTICSHKAARK-DHMKRHLQLKHNA  122 (151)
Q Consensus        90 ~h~~~~~~~C~~C~~~f~~~-~~l~~H~~~~~~~  122 (151)
                      +|.+++||.|..|++.|... ..|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            56778888888888888888 8888888888765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=2.8e-08  Score=47.65  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=26.9

Q ss_pred             hhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        90 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      .|.++++|.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            466778888888888888888888888888765

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.64  E-value=3.1e-08  Score=47.09  Aligned_cols=33  Identities=33%  Similarity=0.455  Sum_probs=22.9

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCCC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEK   67 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   67 (151)
                      |+++++|.|  +.|++.|.+..+|..|+++|++++
T Consensus         2 h~~~k~~~C--~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVC--ALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEEC--SSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeEC--CCCcchhCCHHHHHHHHHHHcCCC
Confidence            456667777  677777777777777777776654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=4.1e-08  Score=47.10  Aligned_cols=33  Identities=24%  Similarity=0.494  Sum_probs=26.4

Q ss_pred             hhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        90 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      .|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            356778888888888888888888888888764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.63  E-value=3.6e-08  Score=46.93  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=22.3

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCCC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEK   67 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   67 (151)
                      |+++++|.|  +.|++.|.....|..|+++|.+++
T Consensus         2 H~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVC--RICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEEC--SSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeC--CCCCcccCCHHHHHHHHHHcCCCC
Confidence            456666777  667777777777777777666554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.61  E-value=2.7e-08  Score=51.24  Aligned_cols=36  Identities=17%  Similarity=0.456  Sum_probs=26.5

Q ss_pred             hhCCCCceeCCcCCccccCHHHHHHHHh-hhcCCccc
Q psy4404          90 RHTGEKPFKCTICSHKAARKDHMKRHLQ-LKHNADLS  125 (151)
Q Consensus        90 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~  125 (151)
                      +|.+++||.|..|++.|.....|..|++ +|+++...
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            3677888888888888888888888888 78765544

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=2.4e-08  Score=58.38  Aligned_cols=58  Identities=14%  Similarity=0.303  Sum_probs=40.3

Q ss_pred             HHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          60 IRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        60 ~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      .++|.++++|.|..|++.|.....|..|+++|.+++||.|..|..    ...|..|.++|.+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            345777778888888888888888888888888878888776553    2334455555554

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.59  E-value=4.6e-08  Score=46.13  Aligned_cols=30  Identities=27%  Similarity=0.455  Sum_probs=14.5

Q ss_pred             ceeCcccccccCChHHHHHHHhhhCCCCce
Q psy4404          68 AFHCPHCEYRCSQQSALYNHLKRHTGEKPF   97 (151)
Q Consensus        68 ~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~   97 (151)
                      ||.|.+|++.|.....|..|+++|.+++||
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            344444444444444444454444444444

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.57  E-value=4.8e-08  Score=47.45  Aligned_cols=37  Identities=22%  Similarity=0.378  Sum_probs=24.8

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCce
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAF   69 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~   69 (151)
                      |+++++|.|.++.|++.|....+|..|+++|.++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            3566777772225777777777777777777776654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.55  E-value=6.8e-08  Score=46.55  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=24.5

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      .+.|+++++|.|  +.|++.|.+...|..|++.|.+
T Consensus         3 ~~~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            3 TRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSTTCCSSSBCC--TTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCcCCCCCCccC--CCCCcccCcHHHHHHHHHHhcc
Confidence            456677777777  7777777777777777777654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=8.2e-08  Score=47.00  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=24.7

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      +++++||.|.++.|++.|.+..+|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5667788883224888888888888888887764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.52  E-value=1.1e-07  Score=45.92  Aligned_cols=32  Identities=19%  Similarity=0.420  Sum_probs=26.7

Q ss_pred             hCCCCceeCC--cCCccccCHHHHHHHHhhhcCC
Q psy4404          91 HTGEKPFKCT--ICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        91 h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      |.+++||.|.  .|++.|.....|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5678888888  4999998888999998888765

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.51  E-value=3.2e-08  Score=50.70  Aligned_cols=36  Identities=19%  Similarity=0.435  Sum_probs=26.0

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      ..|+++++|.|.|+.|++.|....+|..|+++|.++
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            456777778884336888888888888887777664

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=1.9e-07  Score=44.60  Aligned_cols=33  Identities=33%  Similarity=0.707  Sum_probs=24.2

Q ss_pred             CCCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          32 RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        32 ~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      +|.++++|.|  +.|++.|.....|..|+++|.++
T Consensus         3 ~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKC--PQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEEC--SSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCC--CCCCcccCCHHHHHHHHHHccCC
Confidence            4566777777  77777777777777777777654

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=1.8e-07  Score=45.03  Aligned_cols=34  Identities=24%  Similarity=0.425  Sum_probs=26.2

Q ss_pred             CCCCCCcceeeccCCCCcccCCc-hHHHHHHHhhcCC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNS-DHMRRHIRRHTGE   66 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~-~~l~~h~~~h~~~   66 (151)
                      .+|+++++|.|  +.|++.|... ..|..|+++|.++
T Consensus         2 ~~h~~~k~~~C--~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKC--PYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEEC--SSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeEC--CCCChhhccCHHHHHHHHHhcCCC
Confidence            34677778888  7888888887 8888888887664

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.47  E-value=3.3e-07  Score=50.17  Aligned_cols=54  Identities=17%  Similarity=0.293  Sum_probs=34.3

Q ss_pred             cccccccCchHHHHHH-hhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhh
Q psy4404           9 CEVRLESNSKELLEHC-KTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus         9 C~~~f~~~~~~l~~H~-~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h   63 (151)
                      |++.|.+.. .|..|+ +.|.+.........|.|.|..|++.+.....|..|+++.
T Consensus         9 C~~~f~~~~-~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLF-DLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHH-HHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHH-HHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            777777776 777776 344443322223367777777777777777777776653

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.46  E-value=1.8e-07  Score=42.49  Aligned_cols=29  Identities=24%  Similarity=0.575  Sum_probs=21.7

Q ss_pred             CCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      ++||.|..|++.|.....|..|+++|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            35777888888888888888887777654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.46  E-value=1.3e-08  Score=52.26  Aligned_cols=37  Identities=19%  Similarity=0.480  Sum_probs=26.1

Q ss_pred             HHHhhhCCCCceeCC--cCCccccCHHHHHHHHhhhcCC
Q psy4404          86 NHLKRHTGEKPFKCT--ICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        86 ~h~~~h~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      .|...|.+++||.|.  .|++.|.....|..|+++|+++
T Consensus         8 ~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A            8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            344557777777774  5777777777777777777664

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=2e-07  Score=44.52  Aligned_cols=33  Identities=24%  Similarity=0.591  Sum_probs=23.1

Q ss_pred             CCCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          32 RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        32 ~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      .|+++++|.|  +.|++.|.....|..|+++|.++
T Consensus         3 ~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKC--SLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEEC--SSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccC--CCCCchhCCHHHHHHHHHHhccC
Confidence            4566677777  77777777777777777776654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1.7e-07  Score=45.21  Aligned_cols=33  Identities=27%  Similarity=0.684  Sum_probs=24.6

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHH-HHhhcC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRH-IRRHTG   65 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h-~~~h~~   65 (151)
                      ++|+++++|.|  +.|++.|.....|..| ++.|.+
T Consensus         2 ~~H~~~k~~~C--~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYC--SQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             CSSSSSCEEEC--SSSSCEEECHHHHHHHHHHHTCC
T ss_pred             CccCCCcCeEC--CCCCcccCCHHHHHHHHHHHccC
Confidence            35677777888  7788888888888888 777764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=2e-07  Score=44.59  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=22.2

Q ss_pred             CCCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          32 RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        32 ~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      .|+++++|.|  +.|++.|.....|..|+++|.++
T Consensus         3 ~h~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDC--HICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEEC--SSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeEC--CCCCCccCCHHHHHHHHHHhcCC
Confidence            3556667777  66777777777777777666553

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.43  E-value=1.8e-07  Score=42.29  Aligned_cols=28  Identities=32%  Similarity=0.676  Sum_probs=21.2

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4677888888888888888888777654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.43  E-value=1e-08  Score=48.09  Aligned_cols=31  Identities=19%  Similarity=0.449  Sum_probs=23.3

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCCccc
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNADLS  125 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  125 (151)
                      +||.|..|++.|.....|..|+++|++++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4677777888887777777787777777664

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.41  E-value=2.8e-07  Score=41.54  Aligned_cols=28  Identities=36%  Similarity=0.848  Sum_probs=21.0

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            3677777888888888888887777654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=3.3e-07  Score=43.70  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=23.6

Q ss_pred             CCCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          32 RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        32 ~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      .+.++++|.|  +.|++.|.....|..|+++|.++
T Consensus         3 ~h~~~~~~~C--~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLC--DMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBC--TTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeec--CcCCCCcCchHHHHHHHHHhcCC
Confidence            3566677777  77777777777777777777654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.40  E-value=2.5e-07  Score=41.46  Aligned_cols=27  Identities=22%  Similarity=0.754  Sum_probs=21.1

Q ss_pred             CCceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            357888888888888888888887765

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.39  E-value=3e-07  Score=50.66  Aligned_cols=33  Identities=9%  Similarity=0.261  Sum_probs=26.6

Q ss_pred             hCCCCceeCCcCCccccCHHHHHHHHhhhcCCc
Q psy4404          91 HTGEKPFKCTICSHKAARKDHMKRHLQLKHNAD  123 (151)
Q Consensus        91 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  123 (151)
                      +.+++||.|..|++.|.....|..|+++|++..
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            566788888888888888888888888887653

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=3.3e-07  Score=41.28  Aligned_cols=28  Identities=29%  Similarity=0.710  Sum_probs=21.5

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            3677888888888888888888877764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.38  E-value=3.3e-07  Score=44.17  Aligned_cols=34  Identities=38%  Similarity=0.730  Sum_probs=25.1

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      ++++++|.|.++.|++.|.....|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5677788882225888888888888888887765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.38  E-value=2.9e-07  Score=40.95  Aligned_cols=27  Identities=33%  Similarity=0.817  Sum_probs=20.9

Q ss_pred             CCceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      ++||.|..|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            357888888888888888888887663

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=4.1e-07  Score=43.42  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=22.3

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      +.++++|.|  +.|++.|.....|..|+++|.++
T Consensus         4 ~~~~k~~~C--~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTC--EYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEEC--TTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEEC--CCCCceeCCHHHHHHHHHHhCCC
Confidence            456667777  77777777777777777777654

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.37  E-value=3e-07  Score=41.72  Aligned_cols=29  Identities=28%  Similarity=0.772  Sum_probs=21.3

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCCc
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNAD  123 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  123 (151)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            36777777777777777777777777654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.36  E-value=2.4e-08  Score=46.80  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcce
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKY   39 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~   39 (151)
                      ++|.|+.||+.|.... .|..|      +.+|+++++|
T Consensus         1 kp~~C~~C~k~f~~~~-~L~~H------~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSD-ALSKH------IKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHH-TTSSS------TTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHH-HHHHH------HHHHccCCCC
Confidence            4677777777777777 77777      4556666554

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.35  E-value=2.3e-07  Score=41.40  Aligned_cols=26  Identities=19%  Similarity=0.622  Sum_probs=20.0

Q ss_pred             CCceeCCcCCccccCHHHHHHHHhhh
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      ++||.|..|++.|.....|..|+++|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            35788888888888888888887765

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.35  E-value=4e-07  Score=41.88  Aligned_cols=28  Identities=32%  Similarity=0.790  Sum_probs=21.2

Q ss_pred             CceeCC--cCCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCT--ICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|.  .|++.|.....|..|+++|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            467776  7888888888888888877764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.34  E-value=3e-07  Score=47.21  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=22.4

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHH-hhcCCC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIR-RHTGEK   67 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~   67 (151)
                      |+++++|.|  ..|++.|....+|..|++ +|.++.
T Consensus         2 Ht~~kp~~C--~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYAC--DICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEEC--TTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEEC--CCcCcccCCHHHHHHHhhhhcCCCC
Confidence            566777777  777777777777777777 666553

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.34  E-value=4.3e-07  Score=42.07  Aligned_cols=28  Identities=21%  Similarity=0.593  Sum_probs=20.8

Q ss_pred             CceeCC--cCCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCT--ICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|.  .|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            567777  6777777777777777777654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.34  E-value=2.8e-07  Score=41.49  Aligned_cols=28  Identities=29%  Similarity=0.560  Sum_probs=20.9

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            4677777877777777777777777664

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.33  E-value=2.5e-07  Score=44.62  Aligned_cols=25  Identities=12%  Similarity=0.373  Sum_probs=17.1

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHH
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHI   60 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~   60 (151)
                      .+++||.|  +.|++.|.+.++|..|+
T Consensus         4 ~gekp~~C--~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMC--LPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEE--TTTTEECSCHHHHHHHH
T ss_pred             CCccCeEC--CCCCCccCCHhHccCcC
Confidence            45666777  66777777777776665

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.31  E-value=4.8e-07  Score=40.09  Aligned_cols=26  Identities=27%  Similarity=0.723  Sum_probs=19.2

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      ||.|..|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46777788888887888888777764

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.29  E-value=6.5e-07  Score=43.15  Aligned_cols=25  Identities=16%  Similarity=0.325  Sum_probs=16.5

Q ss_pred             CCCCceeCCcCCccccCHHHHHHHH
Q psy4404          92 TGEKPFKCTICSHKAARKDHMKRHL  116 (151)
Q Consensus        92 ~~~~~~~C~~C~~~f~~~~~l~~H~  116 (151)
                      .+++||.|.+|++.|.+.+.|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4566666666666666666666665

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.58  E-value=1.2e-07  Score=42.98  Aligned_cols=28  Identities=18%  Similarity=0.546  Sum_probs=20.4

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            3677777777777777777777777654

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.56  E-value=1.4e-07  Score=41.69  Aligned_cols=24  Identities=25%  Similarity=0.539  Sum_probs=16.7

Q ss_pred             ceeeccccccccccCchHHHHHHhh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      ++|.|+.||+.|.... .|..|+++
T Consensus         1 kp~~C~~C~k~f~~~~-~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSS-QLANHIRH   24 (26)
Confidence            4677777777777777 77777543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.55  E-value=1.4e-07  Score=42.95  Aligned_cols=28  Identities=25%  Similarity=0.679  Sum_probs=20.8

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            5677777777777777777777777654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.22  E-value=1.2e-06  Score=40.46  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=13.7

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      +|.|.++.|++.|.....|..|+++|++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            4555111455555555555555555544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.21  E-value=3.4e-06  Score=46.05  Aligned_cols=29  Identities=17%  Similarity=0.552  Sum_probs=23.4

Q ss_pred             eeeccCCCCcccCCchHHHHHH-HhhcCCC
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHI-RRHTGEK   67 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~-~~h~~~~   67 (151)
                      +.|.|..|++.|.+...|..|+ ..|.+.+
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~   31 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQD   31 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcc
Confidence            5688999999999999999997 4676654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.19  E-value=1.5e-06  Score=39.02  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=9.0

Q ss_pred             eeeccccccccccCchHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEH   23 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H   23 (151)
                      +|.|+.||+.|.... .|..|
T Consensus         2 ~~~C~~C~k~f~~~~-~l~~H   21 (29)
T 1rik_A            2 KFACPECPKRFMRSD-HLTLH   21 (29)
T ss_dssp             CEECSSSSCEESCSH-HHHHH
T ss_pred             CccCCCCCchhCCHH-HHHHH
Confidence            344444444444444 44444

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.18  E-value=8.9e-07  Score=40.18  Aligned_cols=28  Identities=25%  Similarity=0.680  Sum_probs=19.3

Q ss_pred             CceeCCcCCccccCHHHHHHH-HhhhcCC
Q psy4404          95 KPFKCTICSHKAARKDHMKRH-LQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H-~~~~~~~  122 (151)
                      +||.|..|++.|.....|..| +++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            367777777777777777777 5666553

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.17  E-value=1.5e-06  Score=39.23  Aligned_cols=20  Identities=20%  Similarity=0.433  Sum_probs=8.3

Q ss_pred             CCCCcccCCchHHHHHHHhh
Q psy4404          44 QKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h   63 (151)
                      +.|++.|.....|..|++.|
T Consensus         7 ~~C~~~f~~~~~l~~H~~~h   26 (30)
T 2m0d_A            7 DYCGRSFSDPTSKMRHLETH   26 (30)
T ss_dssp             TTTCCEESCHHHHHHHHHTT
T ss_pred             CCCCcccCCHHHHHHHHHHh
Confidence            33444444444444444433

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.15  E-value=1.4e-06  Score=39.98  Aligned_cols=21  Identities=43%  Similarity=0.716  Sum_probs=9.9

Q ss_pred             CCCcccCCchHHHHHHHhhcC
Q psy4404          45 KCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        45 ~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      .|++.|.....|..|+++|++
T Consensus         9 ~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            9 YCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             TCCCBCSSHHHHHHHHTTTSC
T ss_pred             CCCcccCCHhHHHHHHHHhcC
Confidence            444444444444444444443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.42  E-value=3.1e-07  Score=41.54  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=14.5

Q ss_pred             ceeeccccccccccCchHHHHHH
Q psy4404           2 ILVICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      ++|.|+.||+.|.... .|..|+
T Consensus         1 k~~~C~~C~k~f~~~~-~l~~H~   22 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQAS-SLIAHV   22 (29)
Confidence            3566777777776666 666664

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.41  E-value=3.2e-07  Score=40.40  Aligned_cols=25  Identities=20%  Similarity=0.683  Sum_probs=18.8

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhh
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      +||.|..|++.|.....|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            3677777888777777777777765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.40  E-value=3.4e-07  Score=41.61  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=14.9

Q ss_pred             ceeeccccccccccCchHHHHHH
Q psy4404           2 ILVICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      ++|.|+.||+.|.... .|..|+
T Consensus         2 k~~~C~~C~k~f~~~~-~l~~H~   23 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPG-ALQRHV   23 (30)
Confidence            5666777777776666 677774

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.12  E-value=2.4e-06  Score=38.27  Aligned_cols=21  Identities=33%  Similarity=0.736  Sum_probs=10.2

Q ss_pred             CCCCcccCCchHHHHHHHhhc
Q psy4404          44 QKCSYHTGNSDHMRRHIRRHT   64 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h~   64 (151)
                      +.|++.|.....|..|+++|.
T Consensus         6 ~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            6 EVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             TTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCcccCCHHHHHHHHHHhc
Confidence            444444444444444444444

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.10  E-value=2.9e-06  Score=38.24  Aligned_cols=22  Identities=23%  Similarity=0.676  Sum_probs=10.4

Q ss_pred             CCCCcccCCchHHHHHHHhhcC
Q psy4404          44 QKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      +.|++.|.....|..|+++|++
T Consensus         6 ~~C~k~f~~~~~l~~H~~~h~~   27 (30)
T 1klr_A            6 QYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             SSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCCCCccCCHHHHHHHHHHHcc
Confidence            4444444444444444444443

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.10  E-value=2.8e-06  Score=46.70  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=26.7

Q ss_pred             CCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCC
Q psy4404          32 RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEK   67 (151)
Q Consensus        32 ~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   67 (151)
                      .+.++++|.|  ..|++.|.+..+|..|+++|++..
T Consensus         7 ~~~~ekpy~C--~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            7 GLREAGILPC--GLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             SCCCCCCCCC--TTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCccCcCC--CCCCCccCCHHHHHhhhhhhCCCc
Confidence            3566788888  888888888888888888887753

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.09  E-value=2.8e-06  Score=38.01  Aligned_cols=26  Identities=31%  Similarity=0.756  Sum_probs=13.2

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      +|.|  +.|++.|.....|..|+++|.+
T Consensus         2 ~~~C--~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2m0f_A            2 PLKC--RECGKQFTTSGNLKRHLRIHSG   27 (29)
T ss_dssp             CEEC--TTTSCEESCHHHHHHHHHHHHT
T ss_pred             CccC--CCCCCccCChhHHHHHHHHhcC
Confidence            3445  4555555555555555555443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.09  E-value=2.6e-06  Score=38.08  Aligned_cols=26  Identities=15%  Similarity=0.498  Sum_probs=13.0

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      +|.|  +.|++.|.....|..|+++|++
T Consensus         2 ~~~C--~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKC--PHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCC--SSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcC--CCCCcccCCHHHHHHHHHHhcc
Confidence            3445  4455555555555555554443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.08  E-value=2.4e-06  Score=37.75  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=9.4

Q ss_pred             eeeccccccccccCchHHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      +|.|+.||+.|.... .|..|+
T Consensus         3 ~~~C~~C~k~f~~~~-~l~~H~   23 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFS-AMTKHL   23 (27)
T ss_dssp             CEECSSSSCEESSHH-HHHHHH
T ss_pred             CccCCCcChhhCCHH-HHHHHH
Confidence            444444444444444 444443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.06  E-value=2e-06  Score=38.16  Aligned_cols=21  Identities=19%  Similarity=0.339  Sum_probs=9.9

Q ss_pred             eeeccccccccccCchHHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      +|.|+.||+.|.... .|..|+
T Consensus         3 ~~~C~~C~k~f~~~~-~l~~H~   23 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLA-SMQAHM   23 (27)
T ss_dssp             TEEETTTTEEESCHH-HHHHHH
T ss_pred             CcCCCCCCcccCCHH-HHHHHH
Confidence            444444444444444 444443

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.06  E-value=2.5e-06  Score=37.97  Aligned_cols=22  Identities=18%  Similarity=0.372  Sum_probs=11.2

Q ss_pred             ceeeccccccccccCchHHHHHH
Q psy4404           2 ILVICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      ++|.|+.||+.|.... .|..|+
T Consensus         2 k~~~C~~C~k~f~~~~-~l~~H~   23 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKH-QMETHY   23 (28)
T ss_dssp             CSEECSSSCCEESCHH-HHHHHH
T ss_pred             cCccCCCCCcccCCHH-HHHHHH
Confidence            3455555555555544 555553

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.05  E-value=3.5e-06  Score=37.71  Aligned_cols=26  Identities=15%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             CceeCC--cCCccccCHHHHHHHHhhhc
Q psy4404          95 KPFKCT--ICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        95 ~~~~C~--~C~~~f~~~~~l~~H~~~~~  120 (151)
                      +||.|.  .|++.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            367777  78888888888888877765

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.00  E-value=3.6e-06  Score=37.06  Aligned_cols=19  Identities=32%  Similarity=0.558  Sum_probs=8.2

Q ss_pred             eeccccccccccCchHHHHH
Q psy4404           4 VICQYCEVRLESNSKELLEH   23 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H   23 (151)
                      |.|+.||+.|.... .|..|
T Consensus         2 ~~C~~C~k~f~~~~-~l~~H   20 (27)
T 1znf_A            2 YKCGLCERSFVEKS-ALSRH   20 (27)
T ss_dssp             CBCSSSCCBCSSHH-HHHHH
T ss_pred             ccCCCCCCcCCCHH-HHHHH
Confidence            34444444444444 44444

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.90  E-value=6.5e-06  Score=37.12  Aligned_cols=20  Identities=20%  Similarity=0.502  Sum_probs=9.9

Q ss_pred             eeeccccccccccCchHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEH   23 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H   23 (151)
                      +|.|+.||+.|.... .|..|
T Consensus         2 ~~~C~~C~k~f~~~~-~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFTRRD-LLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCSSSH-HHHHH
T ss_pred             CcCCcccCcccCChH-HHHHH
Confidence            444555555554444 55555

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.89  E-value=8.9e-06  Score=36.26  Aligned_cols=19  Identities=21%  Similarity=0.513  Sum_probs=9.3

Q ss_pred             CCCcccCCchHHHHHHHhh
Q psy4404          45 KCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        45 ~C~~~f~~~~~l~~h~~~h   63 (151)
                      .|++.|.+...|..|+++|
T Consensus         9 ~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            9 NCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             TTCEEESSHHHHHHHHGGG
T ss_pred             cCcCccCCHHHHHHHHHHh
Confidence            4555555544454444444

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.20  E-value=8.6e-05  Score=37.13  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=19.2

Q ss_pred             ceeeccccccccccCchHHHHHHhh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      +.|.||.|++.|.... .|..||+.
T Consensus        11 ~~~~CPrCn~~f~~~~-sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTE-ALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHH-HHHHHHHH
T ss_pred             CceeCCcccccccchH-HHHhhhhh
Confidence            4678888888888888 88888764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.95  E-value=0.0003  Score=45.72  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=54.1

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHH
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHL  116 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~  116 (151)
                      ....|+..+|+..+.. ..+..|... =.-.+..|+.|+..+ ....+..|.......++..|..|+..+.. ..+..|.
T Consensus        81 l~v~C~n~GC~~~~~~-~~l~~H~~~-C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~  156 (170)
T 3hcs_A           81 LMVKCPNEGCLHKMEL-RHLEDHQAH-CEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHD  156 (170)
T ss_dssp             SEEECCSTTCCCEEEG-GGHHHHHTT-CTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHH
T ss_pred             cccCCCCCCCCceecH-hHHHHHHhc-CCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHH
Confidence            3455654577766553 456666532 233567788888777 44457888877777777888888876654 5667888


Q ss_pred             hhhcCCccc
Q psy4404         117 QLKHNADLS  125 (151)
Q Consensus       117 ~~~~~~~~~  125 (151)
                      ..+.|+.++
T Consensus       157 ~~~~~~~~~  165 (170)
T 3hcs_A          157 QNCPLALEH  165 (170)
T ss_dssp             TTCCC----
T ss_pred             HhCcChhhh
Confidence            877776554

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.93  E-value=0.00021  Score=43.85  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=25.5

Q ss_pred             hhhCCCCceeCCcCCccccCHHHHHHHHhhh
Q psy4404          89 KRHTGEKPFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        89 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      ..++|++||.|..|++.|.+...|..|+++.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            3467788899999999999999999888764

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.34  E-value=0.0045  Score=30.94  Aligned_cols=27  Identities=11%  Similarity=0.223  Sum_probs=20.7

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      .+|.|+.|+..|.....|+.||+-..+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp   37 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCP   37 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCc
Confidence            467888888888888888888875443

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.01  E-value=0.0021  Score=39.72  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=41.3

Q ss_pred             ceeeccccccccccCchHHHHHH--hhcCCCCCCCCCcceeecc----CCCCcccCCchHHHHHHHhhcCCCceeCcccc
Q psy4404           2 ILVICQYCEVRLESNSKELLEHC--KTCKNLSRPDVSFKYVCLY----QKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCE   75 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~--~~~~~~~~~~~~~~~~C~~----~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~   75 (151)
                      +++.|..|+..|.+.. .+..|.  +.|...     .+.+.+..    +.-++.+....    +.....+...+.|..|.
T Consensus        31 ~~~~C~~C~v~~~S~s-~~~~H~~gkkH~~~-----v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~  100 (127)
T 1zu1_A           31 SDTQCKVCSAVLISES-QKLAHYQSRKHANK-----VRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCN  100 (127)
T ss_dssp             CSSEETTTTEECCSHH-HHHHHHHCHHHHHH-----HHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTT
T ss_pred             CCCcCcCCCCEeCCHH-HHHHHHCcHHHHHH-----HHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCC
Confidence            3567999999999988 999885  222110     00111100    00011111110    11123345567788888


Q ss_pred             cccCChHHHHHHHh
Q psy4404          76 YRCSQQSALYNHLK   89 (151)
Q Consensus        76 ~~~~~~~~l~~h~~   89 (151)
                      ..|.+...+..|..
T Consensus       101 ~~f~s~~~~~~H~~  114 (127)
T 1zu1_A          101 MTFSSPVVAESHYI  114 (127)
T ss_dssp             EECSSHHHHHHHHT
T ss_pred             CEeCCHHHHHHHHC
Confidence            88887777777763

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.93  E-value=0.0021  Score=39.48  Aligned_cols=30  Identities=17%  Similarity=0.185  Sum_probs=18.6

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHh
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRR   62 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~   62 (151)
                      -.++|.++|.|  ..|++.|.+...|..|+++
T Consensus        43 ed~tGekpfyC--~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRC--LACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEE--TTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEc--ccCcchhCCHHHHHHHHhh
Confidence            34455666666  6666666666666666544

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.56  E-value=0.038  Score=35.64  Aligned_cols=82  Identities=18%  Similarity=0.302  Sum_probs=55.1

Q ss_pred             eeecc--ccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCC
Q psy4404           3 LVICQ--YCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQ   80 (151)
Q Consensus         3 ~~~C~--~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   80 (151)
                      .+.|+  -|+..+.. . .|..|...|       .-.+..|  +.|+..+ .+..|..|....-..+...|+.|+..+..
T Consensus        82 ~v~C~n~GC~~~~~~-~-~l~~H~~~C-------~~~~v~C--~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~  149 (170)
T 3hcs_A           82 MVKCPNEGCLHKMEL-R-HLEDHQAHC-------EFALMDC--PQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF  149 (170)
T ss_dssp             EEECCSTTCCCEEEG-G-GHHHHHTTC-------TTSEEEC--TTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG
T ss_pred             ccCCCCCCCCceecH-h-HHHHHHhcC-------CceeeEC--CCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH
Confidence            34563  46666543 3 677773221       1245779  8999988 55778999876667778899999988766


Q ss_pred             hHHHHHHHhhhCCCCce
Q psy4404          81 QSALYNHLKRHTGEKPF   97 (151)
Q Consensus        81 ~~~l~~h~~~h~~~~~~   97 (151)
                      .. +..|..+++|+.++
T Consensus       150 ~~-l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          150 ED-KEIHDQNCPLALEH  165 (170)
T ss_dssp             GG-HHHHHTTCCC----
T ss_pred             HH-HHhHHHhCcChhhh
Confidence            55 78999888887654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.36  E-value=0.0051  Score=38.01  Aligned_cols=77  Identities=12%  Similarity=0.157  Sum_probs=49.6

Q ss_pred             CcceeeccCCCCcccCCchHHHHHH--HhhcCC-CceeCc------ccccccCChHHHHHHHhhhCCCCceeCCcCCccc
Q psy4404          36 SFKYVCLYQKCSYHTGNSDHMRRHI--RRHTGE-KAFHCP------HCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKA  106 (151)
Q Consensus        36 ~~~~~C~~~~C~~~f~~~~~l~~h~--~~h~~~-~~~~C~------~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f  106 (151)
                      ..++.|  ..|...|.+...+..|.  +.|... +.+.+.      .-+..+....    +...+.+...|.|..|+..|
T Consensus        30 ~~~~~C--~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f  103 (127)
T 1zu1_A           30 FSDTQC--KVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTF  103 (127)
T ss_dssp             BCSSEE--TTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEEC
T ss_pred             CCCCcC--cCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEe
Confidence            356889  99999999999999998  344321 111111      0111221111    12234455679999999999


Q ss_pred             cCHHHHHHHHhh
Q psy4404         107 ARKDHMKRHLQL  118 (151)
Q Consensus       107 ~~~~~l~~H~~~  118 (151)
                      .+...+..|...
T Consensus       104 ~s~~~~~~H~~g  115 (127)
T 1zu1_A          104 SSPVVAESHYIG  115 (127)
T ss_dssp             SSHHHHHHHHTS
T ss_pred             CCHHHHHHHHCC
Confidence            999999999874

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=94.87  E-value=0.02  Score=28.51  Aligned_cols=17  Identities=18%  Similarity=0.374  Sum_probs=11.2

Q ss_pred             CceeeccccccccccCc
Q psy4404           1 MILVICQYCEVRLESNS   17 (151)
Q Consensus         1 ~~~~~C~~C~~~f~~~~   17 (151)
                      |..|.|..||+.|....
T Consensus         1 ~~iY~C~rCg~~fs~~e   17 (48)
T 4ayb_P            1 MAVYRCGKCWKTFTDEQ   17 (48)
T ss_dssp             ----CCCCTTTTCCCCC
T ss_pred             CcEEEeeccCCCccHHH
Confidence            56899999999997766

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=94.85  E-value=0.012  Score=32.94  Aligned_cols=42  Identities=17%  Similarity=0.423  Sum_probs=29.4

Q ss_pred             CceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCC
Q psy4404           1 MILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGN   52 (151)
Q Consensus         1 ~~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~   52 (151)
                      |-.|.|..||.++.. . .+..|...|      .+...|.|  .+|++.|..
T Consensus         8 MV~F~C~~Cgd~lKK-~-kv~~H~~~C------r~~~~~SC--IDC~~~F~~   49 (79)
T 1wjv_A            8 MVFFTCNACGESVKK-I-QVEKHVSNC------RNCECLSC--IDCGKDFWG   49 (79)
T ss_dssp             CCEEEESSSCCEEET-T-HHHHHHHHC------TTCCEEEE--TTTTEEEEG
T ss_pred             eeEEEcCCCCCeeec-c-cchhHHhhC------CCCCcEEe--cccCCeeCC
Confidence            456788888888755 3 688885432      33345888  888888875

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.65  E-value=0.013  Score=27.37  Aligned_cols=22  Identities=36%  Similarity=0.606  Sum_probs=17.6

Q ss_pred             eeeccccccccccCchHHHHHHh
Q psy4404           3 LVICQYCEVRLESNSKELLEHCK   25 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~   25 (151)
                      -|.||.|-+.|.+.. .|..|..
T Consensus         5 GFiCP~C~~~l~s~~-~L~~Hye   26 (34)
T 3mjh_B            5 GFICPQCMKSLGSAD-ELFKHYE   26 (34)
T ss_dssp             EEECTTTCCEESSHH-HHHHHHH
T ss_pred             ccCCcHHHHHcCCHH-HHHHHHH
Confidence            478888888888888 8888853

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=89.86  E-value=0.55  Score=21.74  Aligned_cols=20  Identities=30%  Similarity=0.793  Sum_probs=9.9

Q ss_pred             eeCcccccccCChHHHHHHH
Q psy4404          69 FHCPHCEYRCSQQSALYNHL   88 (151)
Q Consensus        69 ~~C~~C~~~~~~~~~l~~h~   88 (151)
                      |.||.|.+.+.+...|..|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hy   25 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHY   25 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHH
T ss_pred             cCCcHHHHHcCCHHHHHHHH
Confidence            44555555555555444443

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=89.30  E-value=0.15  Score=28.52  Aligned_cols=19  Identities=32%  Similarity=0.597  Sum_probs=11.7

Q ss_pred             eeccccccccccCchHHHHHH
Q psy4404           4 VICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      -+||.||....-  .+|..+|
T Consensus         9 ~~~PlCG~~L~W--~eLIeQM   27 (95)
T 2k5c_A            9 AKCPICGSPLKW--EELIEEM   27 (95)
T ss_dssp             EECSSSCCEECH--HHHHHHS
T ss_pred             ccCCcCCCccCH--HHHHHHH
Confidence            357777777654  3566664

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=89.26  E-value=0.27  Score=21.70  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=16.6

Q ss_pred             eeeccccccccccCchHHHHHHhh
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      .|.|+.|....-... .|+.|.+.
T Consensus         3 k~~CpvCk~q~Pd~k-t~~~H~e~   25 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMD-TLQIHVME   25 (28)
T ss_dssp             CEECTTSSCEESSHH-HHHHHHHH
T ss_pred             cccCccccccCcChH-HHHHHHHH
Confidence            467888888777776 77777543

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=89.26  E-value=0.21  Score=28.43  Aligned_cols=19  Identities=26%  Similarity=0.586  Sum_probs=12.9

Q ss_pred             eeccccccccccCchHHHHHHhh
Q psy4404           4 VICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      ++|.+||+.|.    .|..|+.+
T Consensus        22 iiClecGK~fK----~LkRHL~~   40 (87)
T 2jsp_A           22 IVCLECGGSFK----SLKRHLTT   40 (87)
T ss_dssp             EECTBTCCEES----BHHHHHHH
T ss_pred             eEecccchhhH----HHHHHHHH
Confidence            56888888874    45577544

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=88.78  E-value=0.31  Score=23.33  Aligned_cols=19  Identities=26%  Similarity=0.485  Sum_probs=12.3

Q ss_pred             eeeccccccccccCchHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEH   23 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H   23 (151)
                      .|.|+.||+.|.. . .++.|
T Consensus         9 ~~~C~~C~~~i~~-~-~~~EH   27 (39)
T 2i5o_A            9 QVPCEKCGSLVPV-W-DMPEH   27 (39)
T ss_dssp             EEECTTTCCEEEG-G-GHHHH
T ss_pred             CcccccccCcCCc-c-cccch
Confidence            4677777777765 3 55666

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=88.04  E-value=0.68  Score=21.62  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=17.6

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhh
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      .+.|..|+.+|.....+..|.+--
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHHHT
T ss_pred             cCeeccccceehhhHHHhhhheec
Confidence            467777888888777777777643

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=87.56  E-value=0.25  Score=28.17  Aligned_cols=28  Identities=25%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             eeCCcCCccccCHHHHHHHHhhhcCCccccc
Q psy4404          97 FKCTICSHKAARKDHMKRHLQLKHNADLSSM  127 (151)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~  127 (151)
                      ..|.+||+.|..   |.+|+++++|..+.+.
T Consensus        22 iiClecGK~fK~---LkRHL~~~hgltpeeY   49 (87)
T 2jsp_A           22 IVCLECGGSFKS---LKRHLTTHHSMTPEEY   49 (87)
T ss_dssp             EECTBTCCEESB---HHHHHHHTTCSCHHHH
T ss_pred             eEecccchhhHH---HHHHHHHccCCCHHHH
Confidence            578888888774   5688888766665544

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=86.19  E-value=0.14  Score=28.58  Aligned_cols=38  Identities=13%  Similarity=0.438  Sum_probs=15.8

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccC
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCS   79 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   79 (151)
                      |.|  +.||-.+.- ..|..|...-.+-..+.|..|+..|.
T Consensus        11 F~C--~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~   48 (79)
T 1wjv_A           11 FTC--NACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFW   48 (79)
T ss_dssp             EEE--SSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred             EEc--CCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeC
Confidence            445  555544433 23444433322222344444544444

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=83.51  E-value=0.67  Score=25.32  Aligned_cols=34  Identities=15%  Similarity=0.521  Sum_probs=13.9

Q ss_pred             CCCcccCCchHHHHHHHhhcCCCceeCcccccccC
Q psy4404          45 KCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCS   79 (151)
Q Consensus        45 ~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~   79 (151)
                      .|+..+.. ..|..|....-..+...|..|+..+.
T Consensus        22 ~C~~~v~r-~~l~~H~~~~C~~r~v~C~~C~~~~~   55 (76)
T 2yuc_A           22 RCPMKLSR-RDLPAHLQHDCPKRRLKCEFCGCDFS   55 (76)
T ss_dssp             CCSCBCCS-SSSTTTTTTSCTTSCCCCSSSCCCCC
T ss_pred             cccHHhhH-hHHHhhCHhhCCCcceECCCCCCccC
Confidence            34444333 33344433222233344555555443

>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}

Probab=82.66  E-value=0.39  Score=27.50  Aligned_cols=24  Identities=17%  Similarity=0.397  Sum_probs=17.4

Q ss_pred             eeeccCCCCcccCCchHHHHHHHh
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRR   62 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~   62 (151)
                      -.|.|++|+..|.+...+.+|...
T Consensus        13 g~CkWPGCe~~~ed~~~FlkHL~~   36 (93)
T 4i1l_A           13 GVCKWPGCEKVFEEPEEFLKHCQA   36 (93)
T ss_dssp             -----CCSTTTTHHHHHHHHHHHH
T ss_pred             CcccCCCCCCcccCHHHHHHHhhc
Confidence            358999999999999999999765

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=81.12  E-value=0.74  Score=27.16  Aligned_cols=31  Identities=19%  Similarity=0.464  Sum_probs=21.6

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcCCCceeCcccccccCC
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRCSQ   80 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~~~   80 (151)
                      .+|.|  ..||..|...-           .+|..|+.|+.....
T Consensus        66 ~p~~C--~~CG~~F~~~~-----------~kPsrCP~CkSe~Ie   96 (105)
T 2gmg_A           66 KPAQC--RKCGFVFKAEI-----------NIPSRCPKCKSEWIE   96 (105)
T ss_dssp             CCCBB--TTTCCBCCCCS-----------SCCSSCSSSCCCCBC
T ss_pred             ECcCh--hhCcCeecccC-----------CCCCCCcCCCCCccC
Confidence            47889  89999994321           356789998776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	7e-08
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.002
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-07
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	6e-07
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	8e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	9e-07
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	4e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-04
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	3e-05
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	2e-04
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	4e-05
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	2e-04
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	8e-05
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	2e-04
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.002
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	5e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	8e-04
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.001

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (105), Expect = 7e-08
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 64  TGEKAFHCPHCEYRCSQQSALYNHLKR-HTGEKPFKCTI 101
           +  K + C  C    S+   L  H+K+ HT E+P KC +
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.002
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 92  TGEKPFKCTICSHKAARKDHMKRHLQLKH 120
           +  KP+ C  C    +R DH+  H++  H
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 1e-07
 Identities = 11/37 (29%), Positives = 15/37 (40%)

Query: 58 RHIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
          R   +    + + C  C    S  S L  H + HTGE
Sbjct: 2  RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 1e-04
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 87  HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
              +    + +KC  C    +    + +H
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKH 31

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (98), Expect = 6e-07
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
          H+GEK + C  C    S+ S L  H + HTGE
Sbjct: 2  HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (83), Expect = 8e-05
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 91  HTGEKPFKCTICSHKAARKDHMKRH 115
           H+GEKP+ C  C    +R   + +H
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQH 26

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (97), Expect = 9e-07
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 91  HTGEKPFKCTICSHKAARKDHMKRHLQLKHNADL 124
           H+GEKP++C IC  +  +   MK H+  KH  ++
Sbjct: 3   HSGEKPYECYICHARFTQSGTMKMHILQKHTENV 36

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 2e-06
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
          R H+GEK + C  C  R +Q   +  H+ +   E 
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (92), Expect = 4e-06
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 61 RRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
          R HTGEK + C HC+    Q+  L  H KR+    
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 89  KRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNAD 123
           + HTGEKP+ C+ C     +K  +  H +  H+ +
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 3e-05
 Identities = 14/35 (40%), Positives = 16/35 (45%)

Query: 59 HIRRHTGEKAFHCPHCEYRCSQQSALYNHLKRHTG 93
            R  TG K F CP C+   S+   L  H KRH  
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 87  HLKRHTGEKPFKCTICSHKAARKDHMKRH 115
             +  TG KPF+C  C    +R DH+  H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALH 30

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 4e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 68 AFHCPH--CEYRCSQQSALYNHLKRHTGEKPFKC 99
          +F CP   C    + +  L  H+K H+  + + C
Sbjct: 1  SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 2e-04
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHC 71
          + C    C        H++ H++ H+  + + C
Sbjct: 2  FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (83), Expect = 8e-05
 Identities = 5/43 (11%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 55 HMRRHIRRHTGEKAFHCPHCE--YRCSQQSALYNHLKRHTGEK 95
           + ++++    +K F C          ++  + +H++ H  ++
Sbjct: 6  SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 2e-04
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 63 HTGEKAFHCPHCEYRCSQQSALYNHLKRHTGE 94
           +G++ F C  C    + ++    HLK HT  
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.0 bits (73), Expect = 0.002
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 91  HTGEKPFKCTICSHKAARKDHMKRH 115
            +G++PF C IC      K +  RH
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARH 26

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 5e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
          K F CP C  R  +   L  H+K H  +K
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 33.0 bits (76), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 67 KAFHCPHCEYRCSQQSALYNHLKRHTGEK 95
          ++F C  C    ++Q  L  H + HT EK
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.001
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEK 67
          ++C +  C      SD ++RH R HTGEK
Sbjct: 3  FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.67
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.62
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.36
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.33
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.28
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.27
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.2
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.19
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.17
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.14
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.14
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.12
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.11
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.09
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.07
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.04
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.03
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.03
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.02
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.0
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.0
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.99
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.94
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.92
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.92
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.88
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.87
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.87
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.86
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.86
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.85
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.83
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.81
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.77
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.75
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.64
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.58
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.42
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.34
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.29
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.23
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.22
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.16
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.03
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.01
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.95
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.93
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.87
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.8
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.8
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.78
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.65
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.65
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.63
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.58
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.53
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.51
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.48
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.46
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.45
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.43
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.41
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.4
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.39
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.38
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.38
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.37
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.33
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.3
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.3
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.28
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.25
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.25
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.24
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.17
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	97.15
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.03
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.97
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.88
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.86
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.86
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.81
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.78
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.73
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.69
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.36
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.09
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.97
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.96
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.28
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.08
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.03
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.01
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.0
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.84
d1y0jb1	36	U-shaped transcription factor, different fingers {	94.8
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	94.75
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.71
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.59
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.56
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.5
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.93
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	93.85
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.38
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.2
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.33
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.64
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	91.46
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.71
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	90.25
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.44
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	88.65
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	87.4
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	86.21
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	85.79
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	85.76
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	85.16
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	85.11
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	84.05
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	81.68
d2dkta1	74	RING finger and CHY zinc finger domain-containing	81.36
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	81.02
d1dfxa2	36	Desulfoferrodoxin N-terminal domain {Desulfovibrio	80.59
d1vzia2	37	Desulfoferrodoxin N-terminal domain {Desulfoarculu	80.47
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	80.02

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.9e-17  Score=85.87  Aligned_cols=53  Identities=26%  Similarity=0.684  Sum_probs=39.3

Q ss_pred             CCceeCcccccccCChHHHHHHHhhhCCCCceeCCcCCccccCHHHHHHHHhhh
Q psy4404          66 EKAFHCPHCEYRCSQQSALYNHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        66 ~~~~~C~~C~~~~~~~~~l~~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      ++||.| .|++.|.....|..|+++|++++||.|.+|++.|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            456777 47777777777777777777777777777777777777777777665

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.9e-16  Score=82.47  Aligned_cols=52  Identities=23%  Similarity=0.309  Sum_probs=26.5

Q ss_pred             ceeeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCchHHHHHHHhh
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h   63 (151)
                      ++|+| .||+.|.... .|..|+      .+|++++||.|  +.||+.|.+..+|..|+++|
T Consensus         2 K~y~C-~Cgk~F~~~~-~l~~H~------~~Ht~ekpy~C--~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPC-QCGKSFTHKS-QRDRHM------SMHLGLRPYGC--GVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEEC-TTSCEESSHH-HHHHHH------HHHSCCCSEEC--TTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCC-CCCCeECCHH-HhHHHh------hccccccCCcC--CCcCCEecCHHHHHHHHhcC
Confidence            45555 3555555555 555552      33455555555  55555555555555555443

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-13  Score=66.64  Aligned_cols=37  Identities=11%  Similarity=0.345  Sum_probs=32.3

Q ss_pred             HHHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          86 NHLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        86 ~h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +|+++|++++||.|.+|++.|.+.+.|..|+++|+|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4678889999999999999999999999999998875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.8e-13  Score=61.41  Aligned_cols=33  Identities=27%  Similarity=0.646  Sum_probs=28.9

Q ss_pred             hhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          90 RHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        90 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +|++++||.|.+|++.|.+.+.|..|+++|+|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478899999999999999999999999999875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.7e-12  Score=61.79  Aligned_cols=34  Identities=32%  Similarity=0.748  Sum_probs=30.1

Q ss_pred             hhhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          89 KRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        89 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      ++|+|++||.|.+|++.|.+.+.|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4789999999999999999999999999998764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=1.1e-12  Score=62.83  Aligned_cols=35  Identities=31%  Similarity=0.573  Sum_probs=30.7

Q ss_pred             HHhhhCCCCceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          87 HLKRHTGEKPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        87 h~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      |.++|++++||.|.+|++.|.+.+.|..|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            57889999999999999999999999999988864

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=8.7e-12  Score=58.56  Aligned_cols=32  Identities=31%  Similarity=0.737  Sum_probs=28.1

Q ss_pred             hCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          91 HTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        91 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      |+|++||.|.+|++.|.+...|..|+++|++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            57899999999999999999999999988764

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=7.2e-12  Score=55.80  Aligned_cols=28  Identities=36%  Similarity=0.886  Sum_probs=24.9

Q ss_pred             CCceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      |+||.|++|++.|.+.+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5789999999999999999999999876

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.9e-12  Score=59.84  Aligned_cols=34  Identities=24%  Similarity=0.589  Sum_probs=17.9

Q ss_pred             CCceeCCcCCccccCHHHHHHHHh-hhcCCccccc
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQ-LKHNADLSSM  127 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~~  127 (151)
                      ++||.|..|++.|.....|..|++ +|++++||.|
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C   37 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC   37 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCC
Confidence            345555555555555555555543 4555555544

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9e-12  Score=59.99  Aligned_cols=35  Identities=34%  Similarity=0.760  Sum_probs=17.5

Q ss_pred             CcceeeccCCCCcccCCchHHHHHHH-hhcCCCceeCc
Q psy4404          36 SFKYVCLYQKCSYHTGNSDHMRRHIR-RHTGEKAFHCP   72 (151)
Q Consensus        36 ~~~~~C~~~~C~~~f~~~~~l~~h~~-~h~~~~~~~C~   72 (151)
                      ++||.|  +.||+.|.+..+|..|++ +|++++||.|.
T Consensus         3 ~Kpy~C--~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEEC--SSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccC--CCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            344555  555555555555555543 35555555543

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-11  Score=58.76  Aligned_cols=34  Identities=38%  Similarity=0.832  Sum_probs=29.3

Q ss_pred             hhhCCCCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          89 KRHTGEKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        89 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      ++|+|++||.|+.|++.|.+.+.|..|++.++++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            4689999999999999999999999998776654

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.4e-11  Score=58.32  Aligned_cols=34  Identities=18%  Similarity=0.589  Sum_probs=27.7

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhcCCCceeCc
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCP   72 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~   72 (151)
                      |.|+|+.|++.|....+|..|+++|++++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            6777777888888888888888888888888875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.14  E-value=1.9e-11  Score=55.03  Aligned_cols=29  Identities=34%  Similarity=0.825  Sum_probs=23.9

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCCc
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNAD  123 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  123 (151)
                      +||.|.+|++.|.+.+.|..|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            57888888888888888888888888764

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.7e-11  Score=58.99  Aligned_cols=35  Identities=29%  Similarity=0.536  Sum_probs=27.3

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      +.+|++++||.|  +.||+.|...++|..|+++|+++
T Consensus         4 ~~~Ht~ekpy~C--~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           4 EWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CSCCCCSCSSBC--SSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CcccCCCCCEec--CCCCceeeCHHHHHHhCccCCCC
Confidence            567778888888  77888888888888888877764

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.3e-11  Score=55.76  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=22.3

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      |++++||.|  ..||+.|.+.++|..|+++|+++
T Consensus         2 HTgekpy~C--~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGC--VECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEEC--SSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeC--CCCCCEeCchHHhHhhccccCCC
Confidence            567777777  67777777777777777777653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.1e-11  Score=54.22  Aligned_cols=29  Identities=31%  Similarity=0.760  Sum_probs=23.7

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCCc
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNAD  123 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~  123 (151)
                      +||.|.+|++.|.+.+.|..|+++|+|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            57888888888888888888888888764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.5e-11  Score=56.12  Aligned_cols=34  Identities=15%  Similarity=0.298  Sum_probs=26.7

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      ++|+|++||.|  ..||+.|.+.++|..|+++|+++
T Consensus         1 R~HTgekPy~C--~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEEC--SSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEEC--CCCCCCcCCHhHHHHhCcccCCC
Confidence            35788888888  78888888888888888887765

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=8.1e-11  Score=51.07  Aligned_cols=26  Identities=23%  Similarity=0.627  Sum_probs=22.5

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      +||.|.+||+.|.+.+.|.+|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            58889999999999999999988875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=1.3e-10  Score=55.44  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=27.4

Q ss_pred             CCCCCCCcceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          30 LSRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        30 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      .++|++++||.|  +.|++.|.+.++|..|++.|..
T Consensus         3 ~R~HTgeKPy~C--~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           3 TRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             SSTTCCSSSBCC--TTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCccCCccCeEe--CCCCCEecCHHHHHHHHhcCcC
Confidence            577888888888  8888888888888888887753

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=3e-11  Score=60.71  Aligned_cols=36  Identities=19%  Similarity=0.469  Sum_probs=30.3

Q ss_pred             CCCCCcceeeccCCCCcccCCchHHHHHHHhhcCCC
Q psy4404          32 RPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEK   67 (151)
Q Consensus        32 ~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   67 (151)
                      .+++++||.|.|+.|++.|...++|..|+++|++++
T Consensus        12 ~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            478889999966679999999999999999988764

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=7.8e-11  Score=53.75  Aligned_cols=31  Identities=39%  Similarity=0.745  Sum_probs=24.2

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcCCC
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTGEK   67 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~   67 (151)
                      +||.|+|+.|++.|...++|..|+++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            4678877788888888888888888887763

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1.7e-10  Score=54.06  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=24.4

Q ss_pred             CCCCcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          33 PDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        33 ~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      ++|++||.|  +.|++.|.+..+|..|+++|++.
T Consensus         2 ~TGekPy~C--~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVC--RICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEEC--SSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccC--CCCCCcccChHHHHHHccccCCc
Confidence            467778888  77888888888888887777654

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.4e-10  Score=52.40  Aligned_cols=30  Identities=27%  Similarity=0.610  Sum_probs=25.3

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      +||.|.|+.|++.|.+.++|..|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            578888888999999999999998888874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.5e-10  Score=52.23  Aligned_cols=30  Identities=27%  Similarity=0.612  Sum_probs=23.8

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      +||.|.|+.|++.|.+.++|..|+++|+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            468887777888888888888888888764

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=2.3e-11  Score=61.17  Aligned_cols=39  Identities=18%  Similarity=0.494  Sum_probs=27.7

Q ss_pred             HHHHHhhhCCCCceeCCc--CCccccCHHHHHHHHhhhcCCc
Q psy4404          84 LYNHLKRHTGEKPFKCTI--CSHKAARKDHMKRHLQLKHNAD  123 (151)
Q Consensus        84 l~~h~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~  123 (151)
                      +..|+ .|.+++||.|..  |++.|...+.|..|+++|+|++
T Consensus         7 l~~h~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGSC-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcchh-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            34444 377777777765  7777777777778877777764

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.9e-10  Score=52.66  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=25.7

Q ss_pred             CCCCCCcceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          31 SRPDVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        31 ~~~~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      ++|+|++||.|  +.|++.|.+.++|..|++.+++
T Consensus         1 R~HTgekP~~C--~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYEC--YICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEEC--TTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeC--CCCcccccchHHHHHHcccccC
Confidence            36788888888  8888888888888888765444

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=3.7e-10  Score=50.11  Aligned_cols=28  Identities=39%  Similarity=0.758  Sum_probs=16.4

Q ss_pred             CcceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          36 SFKYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        36 ~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      ++||.|  +.|++.|.+.++|..|+++|+|
T Consensus         1 EKPy~C--~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQC--RICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEEC--TTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccC--CCCcCEecccccccccCCCccC
Confidence            355666  5566666666666666665543

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.88  E-value=6.1e-10  Score=49.95  Aligned_cols=23  Identities=35%  Similarity=0.730  Sum_probs=10.6

Q ss_pred             CCCCcccCCchHHHHHHHhhcCC
Q psy4404          44 QKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      +.|++.|.+.+.|..|+++|+++
T Consensus         6 ~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           6 EVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             TTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CCCCCCCCCchHcccccCcccCC
Confidence            44444444444444444444443

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.5e-10  Score=49.39  Aligned_cols=27  Identities=33%  Similarity=0.792  Sum_probs=15.1

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      ||.|  +.|++.|.+.++|..|+++|+++
T Consensus         2 py~C--~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFAC--PECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCC--TTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEEC--CcCCCeecchHHhhhhcCccCCc
Confidence            4555  55555555555555555555554

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=9.5e-10  Score=50.30  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=26.0

Q ss_pred             CcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          36 SFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        36 ~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      ++||.|.|++|++.|...++|..|+++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            4788898888999999999999999888753

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=9.7e-10  Score=49.52  Aligned_cols=28  Identities=36%  Similarity=0.740  Sum_probs=22.9

Q ss_pred             CceeCCc--CCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTI--CSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|..  |++.|...+.|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5788877  888888888888888888875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1e-09  Score=49.52  Aligned_cols=28  Identities=25%  Similarity=0.727  Sum_probs=23.6

Q ss_pred             CceeCCc--CCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTI--CSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|+.  |++.|...+.|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5888876  888898888999998888875

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=7.1e-10  Score=49.53  Aligned_cols=29  Identities=38%  Similarity=0.693  Sum_probs=24.1

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      +||.|.|+.|++.|.+.++|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            47888888888888888888888888864

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.1e-09  Score=51.66  Aligned_cols=27  Identities=22%  Similarity=0.534  Sum_probs=14.5

Q ss_pred             cccccCChHHHHHHHhhhCCCCceeCC
Q psy4404          74 CEYRCSQQSALYNHLKRHTGEKPFKCT  100 (151)
Q Consensus        74 C~~~~~~~~~l~~h~~~h~~~~~~~C~  100 (151)
                      |++.|.....|..|+++|++++||.|.
T Consensus         9 C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           9 CGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCeeCChhHhccccCeeCCCCCEeCC
Confidence            555555555555555555555555543

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.7e-10  Score=48.88  Aligned_cols=28  Identities=29%  Similarity=0.647  Sum_probs=23.5

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhc
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHT   64 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~   64 (151)
                      +||.|.|+.|++.|...++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4788888888888888888888888874

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.9e-09  Score=48.40  Aligned_cols=29  Identities=31%  Similarity=0.769  Sum_probs=22.5

Q ss_pred             CceeCC--cCCccccCHHHHHHHHhhhcCCc
Q psy4404          95 KPFKCT--ICSHKAARKDHMKRHLQLKHNAD  123 (151)
Q Consensus        95 ~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~  123 (151)
                      +||.|+  .|++.|.+.+.|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            477884  48888888888888888888764

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.5e-09  Score=46.26  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=11.9

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhh
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h   63 (151)
                      ||.|  .+||+.|...++|..|+++|
T Consensus         2 Py~C--~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           2 PYKC--LECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CEEC--SSSCCEESSHHHHHHHHHHH
T ss_pred             CccC--CCCcCeeccCcccccCccCC
Confidence            4445  44555555555555554444

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1e-08  Score=45.67  Aligned_cols=27  Identities=22%  Similarity=0.865  Sum_probs=22.1

Q ss_pred             CceeCCc--CCccccCHHHHHHHHhhhcC
Q psy4404          95 KPFKCTI--CSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        95 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~  121 (151)
                      +||.|..  |++.|...+.|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5788866  88888888888888888875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=2.1e-08  Score=45.66  Aligned_cols=28  Identities=21%  Similarity=0.657  Sum_probs=22.5

Q ss_pred             CCceeCCc--CCccccCHHHHHHHHhhhcC
Q psy4404          94 EKPFKCTI--CSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        94 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~  121 (151)
                      ++||.|..  |++.|...+.|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            46888876  88888888888888888864

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.8e-08  Score=43.70  Aligned_cols=26  Identities=27%  Similarity=0.729  Sum_probs=19.2

Q ss_pred             CceeCCc--CCccccCHHHHHHHHhhhc
Q psy4404          95 KPFKCTI--CSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        95 ~~~~C~~--C~~~f~~~~~l~~H~~~~~  120 (151)
                      +||.|..  |++.|...+.|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4677766  7777777777777777764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=2.9e-07  Score=39.09  Aligned_cols=27  Identities=52%  Similarity=0.939  Sum_probs=24.3

Q ss_pred             CCceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      ++||.|..||+.|.......+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            579999999999999999999998874

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.8e-07  Score=38.43  Aligned_cols=29  Identities=31%  Similarity=0.715  Sum_probs=22.8

Q ss_pred             CCceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      ++||+|..|.......+.|..|++.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            46788888888888888888888888764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=4.4e-07  Score=37.30  Aligned_cols=23  Identities=35%  Similarity=0.787  Sum_probs=11.6

Q ss_pred             eCCcCCccccCHHHHHHHHhhhc
Q psy4404          98 KCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        98 ~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      +|..|++-|+++..|.-|+|.|+
T Consensus         3 kc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             ccchhhhHhcchhHHHHHhhccC
Confidence            44555555555555555555444

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.7e-07  Score=37.21  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=11.2

Q ss_pred             CCCCcccCCchHHHHHHHhhc
Q psy4404          44 QKCSYHTGNSDHMRRHIRRHT   64 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h~   64 (151)
                      +.|++.|+.++.|..|++.|+
T Consensus         5 ~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           5 EVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             TTTTBCCCCHHHHHHHGGGCC
T ss_pred             chhhhHhcchhHHHHHhhccC
Confidence            555555555555555555544

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=8.2e-07  Score=38.24  Aligned_cols=28  Identities=36%  Similarity=0.818  Sum_probs=18.8

Q ss_pred             CCceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      ++||.|++|...|.++..+..|.+.|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            3566777777777777777777766654

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.1e-06  Score=36.90  Aligned_cols=29  Identities=24%  Similarity=0.608  Sum_probs=22.6

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      +||.|..+.|++++.+.++|++|++.+++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            47888777888888888888888876543

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.3e-06  Score=37.65  Aligned_cols=29  Identities=21%  Similarity=0.339  Sum_probs=16.2

Q ss_pred             eeCCcCCccccCHHHHHHHHhhhcCCccc
Q psy4404          97 FKCTICSHKAARKDHMKRHLQLKHNADLS  125 (151)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~  125 (151)
                      ..|..||+.|.....|.+|...|.+++||
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            34555555555555555555555555554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.4e-06  Score=38.84  Aligned_cols=28  Identities=36%  Similarity=0.807  Sum_probs=24.7

Q ss_pred             CCCCceeCCcCCccccCHHHHHHHHhhh
Q psy4404          92 TGEKPFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        92 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      +|.+||.|..|++.|.++..+.+|....
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C   28 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSC   28 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhh
Confidence            4678999999999999999999997643

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=5.1e-06  Score=35.68  Aligned_cols=27  Identities=22%  Similarity=0.785  Sum_probs=22.4

Q ss_pred             CceeCCc--CCccccCHHHHHHHHhhhcC
Q psy4404          95 KPFKCTI--CSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        95 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~  121 (151)
                      +||.|..  |++++...++|+.|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5788876  88999999999999987764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=8.7e-06  Score=34.00  Aligned_cols=24  Identities=21%  Similarity=0.490  Sum_probs=15.6

Q ss_pred             eCCcCCccccCHHHHHHHHhhhcC
Q psy4404          98 KCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        98 ~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      .|.+||+.|...+.|.+|+..|++
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            566666666666666666666655

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=6.9e-06  Score=35.28  Aligned_cols=27  Identities=33%  Similarity=0.690  Sum_probs=14.1

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      +||.|  +.|+..|..++.+..|.++|.+
T Consensus         2 kp~~c--pic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           2 KPYSC--PVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CSSEE--TTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCccc--chHHHHhhccccceEeeecccC
Confidence            44555  5555555555555555555543

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=6.1e-06  Score=36.28  Aligned_cols=26  Identities=31%  Similarity=0.565  Sum_probs=13.3

Q ss_pred             CCCCcccCCchHHHHHHHhhcCCCce
Q psy4404          44 QKCSYHTGNSDHMRRHIRRHTGEKAF   69 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h~~~~~~   69 (151)
                      +.||+.|.+.-.|.+|..+|.+++||
T Consensus         9 e~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           9 EICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             TTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            45555555555555555555555443

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=8.9e-06  Score=34.41  Aligned_cols=25  Identities=28%  Similarity=0.608  Sum_probs=12.5

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhh
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h   63 (151)
                      +||.|  +.||+.|...+...+|.++|
T Consensus         2 kPf~C--~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFAC--DICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEEC--TTTCCEESSHHHHHHHHGGG
T ss_pred             CCccc--chhhhhhhcchhhhhhhhhc
Confidence            44555  55555555555555554444

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.3e-05  Score=33.85  Aligned_cols=26  Identities=19%  Similarity=0.612  Sum_probs=19.0

Q ss_pred             eeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          97 FKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      |.|+.|+....-.+.|..|+|.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            66777777777777777777777765

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.2e-05  Score=33.75  Aligned_cols=27  Identities=41%  Similarity=0.842  Sum_probs=16.7

Q ss_pred             CceeCcccccccCChHHHHHHHhhhCC
Q psy4404          67 KAFHCPHCEYRCSQQSALYNHLKRHTG   93 (151)
Q Consensus        67 ~~~~C~~C~~~~~~~~~l~~h~~~h~~   93 (151)
                      +||+|..|...-..++.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            456666666666666666666666654

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.65  E-value=2.6e-05  Score=32.81  Aligned_cols=27  Identities=22%  Similarity=0.523  Sum_probs=22.1

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhh
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h   63 (151)
                      .||.|+..+|++.|...+.|.+|-++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            468888788888888888888888776

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.8e-05  Score=32.43  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=11.9

Q ss_pred             eCcccccccCChHHHHHHHhhhCC
Q psy4404          70 HCPHCEYRCSQQSALYNHLKRHTG   93 (151)
Q Consensus        70 ~C~~C~~~~~~~~~l~~h~~~h~~   93 (151)
                      .|.+|+++|..++.|.+|+..|++
T Consensus         4 vc~ecgkaf~essklkrh~lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQLVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHhhcccC
Confidence            444555555555555555544444

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.63  E-value=2.6e-05  Score=31.55  Aligned_cols=24  Identities=25%  Similarity=0.715  Sum_probs=20.9

Q ss_pred             eeCCcCCccccCHHHHHHHHhhhc
Q psy4404          97 FKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      |+|..|.++|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            678999999999999999998874

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.58  E-value=2.6e-05  Score=35.91  Aligned_cols=24  Identities=21%  Similarity=0.445  Sum_probs=12.5

Q ss_pred             eeeccccccccccCchHHHHHHhhc
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTC   27 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~   27 (151)
                      .|+|..|++.|.+.. +|--||+.|
T Consensus         5 ~~~C~~C~k~F~s~q-ALGGH~~~H   28 (37)
T d1njqa_           5 SYTCSFCKREFRSAQ-ALGGHMNVH   28 (37)
T ss_dssp             SEECTTTCCEESSHH-HHHHHHHTT
T ss_pred             ccCCCCCCCccCCcc-cccchHhhh
Confidence            355555555555555 555554443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=5.5e-05  Score=31.03  Aligned_cols=25  Identities=24%  Similarity=0.386  Sum_probs=15.2

Q ss_pred             eCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          98 KCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        98 ~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      .|+.|.+.|.++..|..|-|.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            4566666666666666666666654

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3.4e-05  Score=34.50  Aligned_cols=29  Identities=38%  Similarity=0.690  Sum_probs=23.6

Q ss_pred             ceeeccCCCCc---ccCCchHHHHHHHhhcCC
Q psy4404          38 KYVCLYQKCSY---HTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        38 ~~~C~~~~C~~---~f~~~~~l~~h~~~h~~~   66 (151)
                      .|.|.|..|.+   .|.....|..|+++|+++
T Consensus         2 ~y~C~W~~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCCCCcchhHHHHHHHHhhcCCC
Confidence            47888999964   488888899999999875

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=5.9e-05  Score=34.45  Aligned_cols=30  Identities=23%  Similarity=0.476  Sum_probs=24.7

Q ss_pred             CCcceeeccCCCCcccCCchHHHHHHHhhc
Q psy4404          35 VSFKYVCLYQKCSYHTGNSDHMRRHIRRHT   64 (151)
Q Consensus        35 ~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~   64 (151)
                      +++||.|..++|+.+|.+.+.|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            478888888889999988888888877764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=7.7e-05  Score=30.94  Aligned_cols=26  Identities=35%  Similarity=0.838  Sum_probs=19.4

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      +||+|..|...-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57777777777777777777777764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=6.9e-05  Score=31.69  Aligned_cols=28  Identities=29%  Similarity=0.768  Sum_probs=23.2

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|+.|.......++|..|+++.++.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            5888999998888889999998877653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.43  E-value=5.4e-05  Score=30.57  Aligned_cols=24  Identities=29%  Similarity=0.551  Sum_probs=17.4

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhc
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHT   64 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~   64 (151)
                      |+|  ..|.+.|-.++.|.+|+++|.
T Consensus         1 ykc--glcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKC--GLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBC--SSSCCBCSSHHHHHHHGGGTC
T ss_pred             Ccc--cchHHHHHHHHHHHHHHHhhc
Confidence            456  777777777777777777763

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4.8e-05  Score=32.04  Aligned_cols=22  Identities=27%  Similarity=0.682  Sum_probs=13.7

Q ss_pred             eeeccccccccccCchHHHHHHh
Q psy4404           3 LVICQYCEVRLESNSKELLEHCK   25 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~   25 (151)
                      ||.|..|...|..+. +|..||+
T Consensus         1 py~C~~CnF~FKTKG-NLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKG-NLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHH-HHHHHHH
T ss_pred             CcccceeeeeEeecc-chhHhhh
Confidence            456666666666666 6666654

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.40  E-value=7.6e-05  Score=32.23  Aligned_cols=25  Identities=36%  Similarity=0.814  Sum_probs=21.2

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      ||.|.+|++.|.++..|.+|.+.-+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            7889999999999999999877554

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.39  E-value=8.5e-05  Score=34.12  Aligned_cols=29  Identities=17%  Similarity=0.434  Sum_probs=21.7

Q ss_pred             CcceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          36 SFKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        36 ~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      .+.|.|  ..|++.|.+..+|-.||+.|..+
T Consensus         3 ~r~~~C--~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           3 PRSYTC--SFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSSEEC--TTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CCccCC--CCCCCccCCcccccchHhhhcch
Confidence            345778  77888888888888888777544

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.38  E-value=0.0001  Score=31.07  Aligned_cols=30  Identities=30%  Similarity=0.496  Sum_probs=22.7

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcCC
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTGE   66 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~   66 (151)
                      +||.|....|.+.|.+-..|.+|..+|+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            467777778888888888888887777653

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.38  E-value=0.00012  Score=30.66  Aligned_cols=25  Identities=24%  Similarity=0.685  Sum_probs=20.4

Q ss_pred             CceeCCc--CCccccCHHHHHHHHhhh
Q psy4404          95 KPFKCTI--CSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        95 ~~~~C~~--C~~~f~~~~~l~~H~~~~  119 (151)
                      .||.|+.  |++.|+..+.|.+|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            4788865  888888888888888876

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4.7e-05  Score=32.89  Aligned_cols=26  Identities=31%  Similarity=0.586  Sum_probs=14.8

Q ss_pred             ceeeccCCCCcccCCchHHHHHH-Hhh
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHI-RRH   63 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~-~~h   63 (151)
                      ||.|..+.|.+.|...+.-.+|+ ++|
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CccccCCChhhhhcchhhhhhhccccc
Confidence            55665555666666665555554 444

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=4e-05  Score=30.97  Aligned_cols=22  Identities=18%  Similarity=0.455  Sum_probs=16.0

Q ss_pred             ceeeccccccccccCchHHHHHH
Q psy4404           2 ILVICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      |||+|.-|...|..+. +|+.||
T Consensus         1 mpykcsscsqqfmqkk-dlqshm   22 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKK-DLQSHM   22 (26)
T ss_dssp             CSEECSSSCCEESSHH-HHHHHH
T ss_pred             CCCcccHHHHHHHHHH-HHHHHH
Confidence            5677777777777766 777775

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.30  E-value=6.8e-05  Score=32.37  Aligned_cols=21  Identities=19%  Similarity=0.441  Sum_probs=12.9

Q ss_pred             eeeccccccccccCchHHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      ||.|..|++.|..+. .|..|.
T Consensus         1 Pf~C~~C~R~FaRrD-LlLRH~   21 (31)
T d2adra2           1 PYPCGLCNRAFTRRD-LLIRHA   21 (31)
T ss_dssp             SEECTTTCCEESSHH-HHHHHH
T ss_pred             CcccccccchhhHHH-HHHHHH
Confidence            466666666666665 555564

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00015  Score=29.74  Aligned_cols=25  Identities=36%  Similarity=0.709  Sum_probs=14.2

Q ss_pred             eCcccccccCChHHHHHHHhhhCCC
Q psy4404          70 HCPHCEYRCSQQSALYNHLKRHTGE   94 (151)
Q Consensus        70 ~C~~C~~~~~~~~~l~~h~~~h~~~   94 (151)
                      +|+.|.+.|.++..|..|-+.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            3555555555555555555555554

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.0002  Score=30.18  Aligned_cols=28  Identities=29%  Similarity=0.777  Sum_probs=23.1

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||+|..|...-.+.++|..|++..+++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            4788888888888888999998877664

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.0003  Score=29.46  Aligned_cols=27  Identities=19%  Similarity=0.571  Sum_probs=17.1

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhcC
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKHN  121 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~~  121 (151)
                      +.|.|+.|...|.++-.|+.||-.|+|
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccC
Confidence            456666666666666666666666655

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00015  Score=30.43  Aligned_cols=22  Identities=27%  Similarity=0.696  Sum_probs=10.3

Q ss_pred             CCCCcccCCchHHHHHHHhhcC
Q psy4404          44 QKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      +.||..-...+-|+.|+++|++
T Consensus         5 ~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           5 EECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             TTTCCBCSSHHHHHHHHHHTSS
T ss_pred             cccCcccCCHHHHHHHHHHhcC
Confidence            4444444444444444444443

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00017  Score=30.33  Aligned_cols=24  Identities=29%  Similarity=0.800  Sum_probs=16.0

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhh
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      ||.|..|+..|....+|..||+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            566666777777777777776643

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.00028  Score=28.40  Aligned_cols=24  Identities=29%  Similarity=0.744  Sum_probs=20.4

Q ss_pred             CceeCCcCCccccCHHHHHHHHhh
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQL  118 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~  118 (151)
                      .||+|+.|...|..+.+|..|+..
T Consensus         1 mpykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHh
Confidence            379999999999999999988753

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00024  Score=31.34  Aligned_cols=32  Identities=13%  Similarity=0.407  Sum_probs=24.2

Q ss_pred             eeeccccccccccCchHHHHHHhhcCCCCCCCC
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCKNLSRPDV   35 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~   35 (151)
                      .|.|..|||.|..+. -+..|-..|-++..-.+
T Consensus         4 afvcskcgktftrrn-tm~rha~nc~g~d~~~g   35 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRN-TMARHADNCAGPDGVEG   35 (37)
T ss_dssp             CEECSSSCCEESCHH-HHHHHHHHCCCCCSCCC
T ss_pred             eeeecccccchhcch-HHHHHhhhcCCCCCCCC
Confidence            588999999998888 88899777666544333

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00049  Score=28.82  Aligned_cols=26  Identities=31%  Similarity=0.626  Sum_probs=14.8

Q ss_pred             ceeCcccccccCChHHHHHHHhhhCC
Q psy4404          68 AFHCPHCEYRCSQQSALYNHLKRHTG   93 (151)
Q Consensus        68 ~~~C~~C~~~~~~~~~l~~h~~~h~~   93 (151)
                      .|.|..|...|.+.-.|..|+.+|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            35555555555555555555555554

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00011  Score=31.69  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=15.4

Q ss_pred             CceeCCc--CCccccCHHHHHHHH-hhhc
Q psy4404          95 KPFKCTI--CSHKAARKDHMKRHL-QLKH  120 (151)
Q Consensus        95 ~~~~C~~--C~~~f~~~~~l~~H~-~~~~  120 (151)
                      +||.|..  |.+.|+..++...|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            3566655  666666666666665 4543

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.88  E-value=0.00042  Score=29.12  Aligned_cols=28  Identities=29%  Similarity=0.584  Sum_probs=20.0

Q ss_pred             CceeCCc--CCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTI--CSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +||.|..  |.+.|...-.|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            3566644  778888888888887777764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00051  Score=28.38  Aligned_cols=25  Identities=32%  Similarity=0.840  Sum_probs=14.0

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhh
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h   63 (151)
                      +||+|  ..|...-.+.++|..|++.|
T Consensus         2 kp~kc--k~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKC--KTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEEC--SSSCCEESSHHHHHHHHHHS
T ss_pred             CCccc--ccccchhcchhhHhhhhhcc
Confidence            35555  55555555555555555554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00056  Score=31.59  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHH
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIR   61 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~   61 (151)
                      +|-+||.|  ..|++.|-.++++.+|..
T Consensus         1 TGiKPYeC--~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYEC--NICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEEC--SSSCCEESCHHHHHHHHH
T ss_pred             CCCCceec--cchhhhhhhHHHHHHhhh
Confidence            35678888  888888888888887753

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.81  E-value=0.00027  Score=28.58  Aligned_cols=23  Identities=17%  Similarity=0.505  Sum_probs=15.0

Q ss_pred             eeeccccccccccCchHHHHHHhh
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      +|+||.|=+.|..+. ++..|+++
T Consensus         1 vypcp~cfkeftrkd-nm~ahvki   23 (26)
T d2drpa2           1 VYPCPFCFKEFTRKD-NMTAHVKI   23 (26)
T ss_dssp             CEECTTTCCEESCHH-HHHHHHHH
T ss_pred             CcCCchhhHHhcccc-CceEEEEE
Confidence            466777777776666 66666544

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00099  Score=30.28  Aligned_cols=27  Identities=30%  Similarity=0.694  Sum_probs=20.5

Q ss_pred             CCceeC--CcCCccccCHHHHHHHHhhhc
Q psy4404          94 EKPFKC--TICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        94 ~~~~~C--~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      ++||.|  +.|+.+|.....|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            678888  448888888888888877764

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.73  E-value=0.0002  Score=29.56  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=11.5

Q ss_pred             eeeccccccccccCchHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEH   23 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H   23 (151)
                      ||.|..||+.+..+. +|..|
T Consensus         1 pf~c~kcgkcyfrke-nlleh   20 (28)
T d2dlqa2           1 PFECPKCGKCYFRKE-NLLEH   20 (28)
T ss_dssp             SCBCTTTCCBCSSHH-HHHHH
T ss_pred             CCccccchhhhhhHh-HHHHH
Confidence            455666666655555 55555

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0015  Score=27.01  Aligned_cols=25  Identities=28%  Similarity=0.563  Sum_probs=19.3

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      |.+|+.|+.+.+....|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5578888888888888888887775

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00097  Score=27.70  Aligned_cols=14  Identities=29%  Similarity=0.589  Sum_probs=7.1

Q ss_pred             cccccccCchHHHHH
Q psy4404           9 CEVRLESNSKELLEH   23 (151)
Q Consensus         9 C~~~f~~~~~~l~~H   23 (151)
                      |+|.|+..+ ++..|
T Consensus         9 C~K~Frd~s-aMRKH   22 (28)
T d1ubdc1           9 CTKMFRDNS-AMRKH   22 (28)
T ss_dssp             CCCEESSHH-HHHHH
T ss_pred             HHHHhhchH-HHHHH
Confidence            555555544 55555

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0027  Score=26.66  Aligned_cols=27  Identities=26%  Similarity=0.731  Sum_probs=17.3

Q ss_pred             cceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          37 FKYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        37 ~~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      +||.|  +.|...-.+.++|..|+++-++
T Consensus         1 kpy~c--qyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQC--QYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCC--SSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccc--cccccccccchhhhhhhhcccc
Confidence            35667  6677666666777777665443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0031  Score=26.40  Aligned_cols=25  Identities=20%  Similarity=0.735  Sum_probs=16.0

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhhc
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRHT   64 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h~   64 (151)
                      ||+|  ..|..-..+.++|..|++.-+
T Consensus         2 PFkC--~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           2 PFKC--NYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             SEEC--SSSSCEESSHHHHHHHHHHHH
T ss_pred             Cccc--ceecccccCcchHHHHHHHHc
Confidence            5666  667666666667766665433

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0017  Score=26.74  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=19.3

Q ss_pred             eeeccccccccccCchHHHHHHhh
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      -|.||+|+.+...++ +|..|++.
T Consensus         2 k~qcphc~tiiarks-dlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKS-DLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHH-HHHHHHHH
T ss_pred             CccCCcchhheeehh-hhhHHhhh
Confidence            378999999988888 99999765

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0045  Score=27.13  Aligned_cols=28  Identities=29%  Similarity=0.593  Sum_probs=22.3

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhhcCCc
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLKHNAD  123 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~  123 (151)
                      .|.|+.|++.|.++..+.+|.....|.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~d   31 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGPD   31 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCCC
Confidence            4789999999999988888877666543

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.006  Score=24.98  Aligned_cols=20  Identities=20%  Similarity=0.497  Sum_probs=11.5

Q ss_pred             ceeeccCCCCcccCCchHHHHH
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRH   59 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h   59 (151)
                      ||.|  ..||+.+..+.+|..|
T Consensus         1 pf~c--~kcgkcyfrkenlleh   20 (28)
T d2dlqa2           1 PFEC--PKCGKCYFRKENLLEH   20 (28)
T ss_dssp             SCBC--TTTCCBCSSHHHHHHH
T ss_pred             CCcc--ccchhhhhhHhHHHHH
Confidence            3555  5566666665555555

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0095  Score=24.60  Aligned_cols=24  Identities=25%  Similarity=0.606  Sum_probs=20.4

Q ss_pred             eeccCCCCcccCCchHHHHHHHhh
Q psy4404          40 VCLYQKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        40 ~C~~~~C~~~f~~~~~l~~h~~~h   63 (151)
                      .|+...|++-|.+.+++++|+.+|
T Consensus         3 ~CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhcc
Confidence            366678999999999999998776

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0041  Score=25.98  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=17.6

Q ss_pred             eeeccccccccccCchHHHHHHhh
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKT   26 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~   26 (151)
                      .|.|.+||+..++.. .+..|+..
T Consensus         2 ~ftc~hcgkqlks~~-gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLA-GMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHH-HHHHHHHH
T ss_pred             ceechhHHHHHhhcc-CceEEEee
Confidence            477888888888877 88888543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.011  Score=26.15  Aligned_cols=19  Identities=5%  Similarity=0.037  Sum_probs=13.9

Q ss_pred             ccccCHHHHHHHHhhhcCC
Q psy4404         104 HKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus       104 ~~f~~~~~l~~H~~~~~~~  122 (151)
                      +.|.....|..|+|.|+|+
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            4677777777888877764

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.011  Score=28.17  Aligned_cols=25  Identities=12%  Similarity=0.412  Sum_probs=22.4

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      .|.|..|++.|.....|++|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            5889999999999999999988773

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.84  E-value=0.019  Score=22.93  Aligned_cols=23  Identities=30%  Similarity=0.775  Sum_probs=16.6

Q ss_pred             eeCCcCCccccCHHHHHHHHhhh
Q psy4404          97 FKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      |.|+.|-+.|.++.++..|.++-
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            66777777777777777776653

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.80  E-value=0.0044  Score=26.88  Aligned_cols=20  Identities=30%  Similarity=0.554  Sum_probs=16.9

Q ss_pred             eeeccccccccccCchHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEH   23 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H   23 (151)
                      .|.|+.||-.|.+.+ -|..|
T Consensus         8 rf~c~pcgirfss~s-tleah   27 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPS-TLEAH   27 (36)
T ss_dssp             CCBCTTTCCBCSCHH-HHHHH
T ss_pred             ceeccccceeecChh-HHHhh
Confidence            477899999998888 88888

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.019  Score=23.51  Aligned_cols=22  Identities=36%  Similarity=0.705  Sum_probs=14.0

Q ss_pred             eeCCcCCccccCHHHHHHHHhh
Q psy4404          97 FKCTICSHKAARKDHMKRHLQL  118 (151)
Q Consensus        97 ~~C~~C~~~f~~~~~l~~H~~~  118 (151)
                      |.|+.|+..-.++++|+.|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            5666666666666666666653

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0032  Score=32.94  Aligned_cols=21  Identities=24%  Similarity=0.399  Sum_probs=16.2

Q ss_pred             eeeccccccccccCchHHHHHH
Q psy4404           3 LVICQYCEVRLESNSKELLEHC   24 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~   24 (151)
                      .|.|..|++.|.+.. .|+.|+
T Consensus        15 qfYCv~C~K~F~se~-~l~~H~   35 (67)
T d1zr9a1          15 LHRCLACARYFIDST-NLKTHF   35 (67)
T ss_dssp             CSEETTTTEECSSHH-HHHHHT
T ss_pred             EEecccccCccCCHH-HHHHHH
Confidence            367888888888887 888883

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.015  Score=25.10  Aligned_cols=23  Identities=22%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             eeccCCCCcccCCchHHHHHHHh
Q psy4404          40 VCLYQKCSYHTGNSDHMRRHIRR   62 (151)
Q Consensus        40 ~C~~~~C~~~f~~~~~l~~h~~~   62 (151)
                      .|.|..|+.-|.++..|..|+..
T Consensus         3 nChW~~C~~eFdtQd~LV~Hinn   25 (32)
T d2glia1           3 DCRWDGCSQEFDSQEQLVHHINS   25 (32)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHH
T ss_pred             cccccccccccCCHHHHHHHccc
Confidence            47899999999999999999865

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.56  E-value=0.019  Score=23.33  Aligned_cols=26  Identities=27%  Similarity=0.652  Sum_probs=17.1

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhc
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHT   64 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~   64 (151)
                      |.|....|++.|..-..|.-|+-+|+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            45655667777777777776666553

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.027  Score=23.11  Aligned_cols=20  Identities=35%  Similarity=0.654  Sum_probs=10.1

Q ss_pred             CCCCcccCCchHHHHHHHhh
Q psy4404          44 QKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        44 ~~C~~~f~~~~~l~~h~~~h   63 (151)
                      +.|...-++...|+-|.++|
T Consensus         6 ~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           6 SECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SSSSCEESSHHHHHHHHGGG
T ss_pred             cccccccCcHHHHHHhhccc
Confidence            45555555555555554444

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.93  E-value=0.043  Score=23.16  Aligned_cols=28  Identities=18%  Similarity=0.464  Sum_probs=19.5

Q ss_pred             CceeCCc--CCccccCHHHHHHHHhhhcCC
Q psy4404          95 KPFKCTI--CSHKAARKDHMKRHLQLKHNA  122 (151)
Q Consensus        95 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~  122 (151)
                      +.|.|+.  |+..|.....|..|+-.|+|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            3466644  777777777788887777764

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.029  Score=23.23  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=16.0

Q ss_pred             eccCCCCcccCCchHHHHHHHh
Q psy4404          41 CLYQKCSYHTGNSDHMRRHIRR   62 (151)
Q Consensus        41 C~~~~C~~~f~~~~~l~~h~~~   62 (151)
                      |..+.||+.|+++..|..|.+-
T Consensus         3 cdf~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           3 CDFPGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             CSSTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCchhhhccHHHHHhHHHH
Confidence            4457788888888888777553

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.03  Score=26.54  Aligned_cols=24  Identities=21%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             ceeeccCCCCcccCCchHHHHHHHhh
Q psy4404          38 KYVCLYQKCSYHTGNSDHMRRHIRRH   63 (151)
Q Consensus        38 ~~~C~~~~C~~~f~~~~~l~~h~~~h   63 (151)
                      -|.|  ..|++.|.+...|+.|-..|
T Consensus         6 l~pC--G~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPC--GLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCC--TTTCCCCSCHHHHHHHHHHH
T ss_pred             eeec--cccccccCCHHHHhHhHHhc
Confidence            3678  88999999988888887666

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.20  E-value=0.037  Score=23.36  Aligned_cols=27  Identities=26%  Similarity=0.744  Sum_probs=13.7

Q ss_pred             eeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      |.|..+.|+..|....-|..|.-.|++
T Consensus         4 ~iCsf~dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1           4 YICSFADCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             EECSSGGGCCEESSHHHHHHHHHHHHC
T ss_pred             eEeeCCCcchhhccchhhhHHhhhhcC
Confidence            445445555555555555555444443

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.025  Score=28.89  Aligned_cols=40  Identities=15%  Similarity=0.321  Sum_probs=25.0

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhcCCCceeCccccccc
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHTGEKAFHCPHCEYRC   78 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~~~~~~~C~~C~~~~   78 (151)
                      +....|.|  +.|++.|.+-..++   ........|.|..|+...
T Consensus        10 ~~~~~y~C--p~C~~~ys~Lda~~---L~d~~~~~F~C~~C~~el   49 (62)
T d1vd4a_          10 TNRASFKC--PVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             CSSSEEEC--SSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBC
T ss_pred             ccCCceEC--CCCCCCcchhhHHH---hcCcCCCeEEecCCCCEE
Confidence            34456888  78888877655432   233444567888877654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.034  Score=28.87  Aligned_cols=24  Identities=21%  Similarity=0.488  Sum_probs=20.2

Q ss_pred             ceeCCcCCccccCHHHHHHHHhhh
Q psy4404          96 PFKCTICSHKAARKDHMKRHLQLK  119 (151)
Q Consensus        96 ~~~C~~C~~~f~~~~~l~~H~~~~  119 (151)
                      .|.|..|++.|.+...|..|+++.
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ksK   38 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRSK   38 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTCH
T ss_pred             EEecccccCccCCHHHHHHHHccc
Confidence            478999999999999999988754

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.057  Score=23.68  Aligned_cols=25  Identities=32%  Similarity=0.752  Sum_probs=20.2

Q ss_pred             ceeeccccccccccCchHHHHHHhhc
Q psy4404           2 ILVICQYCEVRLESNSKELLEHCKTC   27 (151)
Q Consensus         2 ~~~~C~~C~~~f~~~~~~l~~H~~~~   27 (151)
                      ++|.|..|=+-.+++. .|+.|+..|
T Consensus         6 kLyiCEfCLKYmks~~-~l~RH~~KC   30 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRT-ILQQHMKKC   30 (33)
T ss_dssp             CCEECSSSCCEESCHH-HHHHHHHHT
T ss_pred             eeeeehhhhhhhCCHH-HHHHHHHhC
Confidence            6788999988888888 888886544

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.71  E-value=0.24  Score=23.23  Aligned_cols=27  Identities=37%  Similarity=0.850  Sum_probs=14.1

Q ss_pred             CCceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          94 EKPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        94 ~~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      +.|-.|+.|+..-.+..+|++|+...+
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            344555555555555555555554443

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.25  E-value=0.31  Score=22.87  Aligned_cols=28  Identities=21%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             CCcceeeccCCCCcccCCchHHHHHHHhhc
Q psy4404          35 VSFKYVCLYQKCSYHTGNSDHMRRHIRRHT   64 (151)
Q Consensus        35 ~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~   64 (151)
                      .+.|-.|  +.|+....+..+|.+|....+
T Consensus        21 s~qpatc--pic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          21 SEQPATC--PICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TSCCEEC--TTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCCCC--chHHHHHHHHHHHHHHHHHHh
Confidence            3456667  777777777777777765544

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.44  E-value=0.13  Score=22.03  Aligned_cols=20  Identities=15%  Similarity=0.547  Sum_probs=12.0

Q ss_pred             eeeccCCCCcccCCchHHHHHH
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHI   60 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~   60 (151)
                      |.|  ..||-.|.+.+.|..|+
T Consensus         9 f~c--~pcgirfss~stleahq   28 (36)
T d1y0jb1           9 FMC--LPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CBC--TTTCCBCSCHHHHHHHT
T ss_pred             eec--cccceeecChhHHHhhh
Confidence            556  55666666666665554

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.082  Score=26.81  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=19.3

Q ss_pred             eeeccccccccccCchHHHHHHhhcC
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCK   28 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~   28 (151)
                      .|.|.+|+..|.+.. +|..|...|.
T Consensus        18 ~yQC~HCd~K~~s~~-el~~hl~~hn   42 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTA-ELTSHLNIHN   42 (75)
T ss_dssp             CEECSSSCCEESSHH-HHHHHHHHHH
T ss_pred             eeeechhHHHHhhHH-HHHHHHHhcc
Confidence            578888888888888 8888865554

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=87.40  E-value=0.15  Score=22.15  Aligned_cols=29  Identities=21%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             CCCcceeeccCCCCcccCCchHHHHHHHhhc
Q psy4404          34 DVSFKYVCLYQKCSYHTGNSDHMRRHIRRHT   64 (151)
Q Consensus        34 ~~~~~~~C~~~~C~~~f~~~~~l~~h~~~h~   64 (151)
                      +++.-|+|  ..|.+.+...+++-+|..+.+
T Consensus         4 Eg~~~yRC--~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           4 EGEHTYRC--KVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             EETTEEEC--TTTCCEESSHHHHHHHHHHHS
T ss_pred             ccCcEEEe--ehhhHHHHHHHHHHHHHHhhc
Confidence            34556778  778888888888877765543

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=86.21  E-value=0.31  Score=21.90  Aligned_cols=33  Identities=3%  Similarity=-0.318  Sum_probs=21.3

Q ss_pred             eeccccccccccCchHHHHHHhhcCCCCCCCCCcceeeccCCCCcccCCc
Q psy4404           4 VICQYCEVRLESNSKELLEHCKTCKNLSRPDVSFKYVCLYQKCSYHTGNS   53 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~~~~~C~~~~C~~~f~~~   53 (151)
                      .+|+.||.+|.-..               ...+..-.|  +.||..+.++
T Consensus         3 ~vc~~cG~~Yh~~~---------------~pPk~~g~C--D~cg~~L~qR   35 (37)
T d2ak3a2           3 WIHPGSGRVYNIEF---------------NPPKTMGID--DLTGEPLVQR   35 (37)
T ss_dssp             EEETTTTEEEETTT---------------BCCSSTTBC--TTTCCBCBCC
T ss_pred             eeeCCcCChhhhcc---------------CCccccCCc--cCCCCcCEec
Confidence            57888888875443               123445668  8888766554

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=0.35  Score=24.42  Aligned_cols=13  Identities=31%  Similarity=0.948  Sum_probs=6.6

Q ss_pred             ceeCcccccccCC
Q psy4404          68 AFHCPHCEYRCSQ   80 (151)
Q Consensus        68 ~~~C~~C~~~~~~   80 (151)
                      .|.|+.|++.|..
T Consensus        14 ~y~Cp~C~~~ys~   26 (62)
T d1vd4a_          14 SFKCPVCSSTFTD   26 (62)
T ss_dssp             EEECSSSCCEEEH
T ss_pred             ceECCCCCCCcch
Confidence            3555555555544

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=85.76  E-value=0.26  Score=24.12  Aligned_cols=17  Identities=18%  Similarity=0.368  Sum_probs=11.6

Q ss_pred             CceeeccccccccccCc
Q psy4404           1 MILVICQYCEVRLESNS   17 (151)
Q Consensus         1 ~~~~~C~~C~~~f~~~~   17 (151)
                      |+.|.|..||-++.-..
T Consensus         1 M~ky~C~~CgyiYd~~~   17 (53)
T d1iroa_           1 MKKYTCTVCGYIYNPED   17 (53)
T ss_dssp             CCCEEETTTCCEECTTT
T ss_pred             CCCeEcCCCCcEECccc
Confidence            66788888887765433

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.16  E-value=0.28  Score=22.08  Aligned_cols=11  Identities=36%  Similarity=0.927  Sum_probs=6.0

Q ss_pred             CCceeCCcCCc
Q psy4404          94 EKPFKCTICSH  104 (151)
Q Consensus        94 ~~~~~C~~C~~  104 (151)
                      +.|-.|++|+.
T Consensus        18 ~~P~~CPvCg~   28 (37)
T d1nnqa2          18 EAPEYCPVCGA   28 (37)
T ss_dssp             CCCSBCTTTCC
T ss_pred             CCCCcCCCCCC
Confidence            44556666653

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.11  E-value=0.65  Score=23.37  Aligned_cols=26  Identities=19%  Similarity=0.613  Sum_probs=21.2

Q ss_pred             CceeCCcCCccccCHHHHHHHHhhhc
Q psy4404          95 KPFKCTICSHKAARKDHMKRHLQLKH  120 (151)
Q Consensus        95 ~~~~C~~C~~~f~~~~~l~~H~~~~~  120 (151)
                      ..|.|..|...|.....|..|+..|.
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhcc
Confidence            45888888888888888888887775

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=84.05  E-value=0.29  Score=29.91  Aligned_cols=41  Identities=22%  Similarity=0.391  Sum_probs=28.0

Q ss_pred             hHHHHHHhhcCCCCCCCCCc-----ceeeccCCCCcccCCchHHHHHHHhhcC
Q psy4404          18 KELLEHCKTCKNLSRPDVSF-----KYVCLYQKCSYHTGNSDHMRRHIRRHTG   65 (151)
Q Consensus        18 ~~l~~H~~~~~~~~~~~~~~-----~~~C~~~~C~~~f~~~~~l~~h~~~h~~   65 (151)
                      ..|..|.+.    ..-+|..     .|+|  ..||+ +-+..+|.+|++.|-.
T Consensus       125 grlieHiK~----~m~~GqDyvFWQFYKC--e~CgK-YvDie~~~~H~k~HG~  170 (218)
T d2czra1         125 AALVNHIKN----NALAGQDYIFWQFYKC--EECGK-YVDIENLEAHLREHGI  170 (218)
T ss_dssp             HHHHHHHHT----TCCBTTTEEEEEEEEC--TTTCC-EEEGGGHHHHHHTTTC
T ss_pred             HHHHHHHHh----ccccCcceEEEEEeeh--hhcCc-eecHHHHHHHHHHcCc
Confidence            356777653    3334543     4788  88987 6777889999888743

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=81.68  E-value=1.1  Score=18.35  Aligned_cols=24  Identities=21%  Similarity=0.598  Sum_probs=17.4

Q ss_pred             eeeccCCCCcccCCchHHHHHHHh
Q psy4404          39 YVCLYQKCSYHTGNSDHMRRHIRR   62 (151)
Q Consensus        39 ~~C~~~~C~~~f~~~~~l~~h~~~   62 (151)
                      |.|--+.|...|..+.++..|...
T Consensus         3 f~cdsd~cdl~fttkanmkkhfnr   26 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFNR   26 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHHH
T ss_pred             ccccCCCcceEEeehHHHHHHHhh
Confidence            556556788888888888888543

>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CHY zinc finger-like
superfamily: CHY zinc finger-like
family: CHY zinc finger
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.36  E-value=0.57  Score=24.44  Aligned_cols=11  Identities=18%  Similarity=0.407  Sum_probs=5.6

Q ss_pred             cceeeccCCCCcc
Q psy4404          37 FKYVCLYQKCSYH   49 (151)
Q Consensus        37 ~~~~C~~~~C~~~   49 (151)
                      +.+.|  ..|+..
T Consensus        50 ~~l~C--H~Cg~~   60 (74)
T d2dkta1          50 KEVQC--INCEKL   60 (74)
T ss_dssp             CCEEE--SSSCCE
T ss_pred             CEEEe--ccCCCc
Confidence            44555  555543

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.02  E-value=0.1  Score=25.31  Aligned_cols=37  Identities=19%  Similarity=0.354  Sum_probs=21.2

Q ss_pred             eeeccccccccccCchHHHHHHhhcCCCCCCCCC---cceeeccCCCCcccC
Q psy4404           3 LVICQYCEVRLESNSKELLEHCKTCKNLSRPDVS---FKYVCLYQKCSYHTG   51 (151)
Q Consensus         3 ~~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~---~~~~C~~~~C~~~f~   51 (151)
                      .|+|+.|+..--...   +.+       .+..++   ..|.|  ..||..|.
T Consensus         9 ~~~C~kC~~~~~~~~---~~Q-------tRSADEp~T~F~~C--~~Cg~~Wr   48 (50)
T d1tfia_           9 LFTCGKCKKKNCTYT---QVQ-------TRSADEPMTTFVVC--NECGNRWK   48 (50)
T ss_dssp             CSCCSSSCSSCEEEE---EEC-------SSSSSSCCEEEEEE--SSSCCEEE
T ss_pred             CEECCCCCCCccEEE---EEE-------ccCCCCCceEEEEc--cccCCeee
Confidence            578999986633322   222       222222   24778  88988764

>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulfoferrodoxin N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=80.59  E-value=0.36  Score=21.35  Aligned_cols=12  Identities=17%  Similarity=0.365  Sum_probs=9.8

Q ss_pred             ceeecccccccc
Q psy4404           2 ILVICQYCEVRL   13 (151)
Q Consensus         2 ~~~~C~~C~~~f   13 (151)
                      .+|+|..||...
T Consensus         5 evYkC~~CGNiV   16 (36)
T d1dfxa2           5 EVYKCTHCGNIV   16 (36)
T ss_dssp             CEEECTTTCCEE
T ss_pred             cEEEecccCcEE
Confidence            578999998875

>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulfoferrodoxin N-terminal domain
species: Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]

Probab=80.47  E-value=0.36  Score=21.47  Aligned_cols=12  Identities=17%  Similarity=0.465  Sum_probs=9.6

Q ss_pred             ceeecccccccc
Q psy4404           2 ILVICQYCEVRL   13 (151)
Q Consensus         2 ~~~~C~~C~~~f   13 (151)
                      .+|+|..||...
T Consensus         5 evYkC~~CGNiV   16 (37)
T d1vzia2           5 QVYKCEVCGNIV   16 (37)
T ss_dssp             CEEECTTTCCEE
T ss_pred             cEEEecccCcEE
Confidence            578899998775

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=80.02  E-value=0.11  Score=25.89  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=21.1

Q ss_pred             eeccccccccccCchHHHHHHhhcCCCCCCCCC---cceeeccCCCCcccCCc
Q psy4404           4 VICQYCEVRLESNSKELLEHCKTCKNLSRPDVS---FKYVCLYQKCSYHTGNS   53 (151)
Q Consensus         4 ~~C~~C~~~f~~~~~~l~~H~~~~~~~~~~~~~---~~~~C~~~~C~~~f~~~   53 (151)
                      ++||.||..-....   +.+       .+..++   ..|.|  ..|+..|...
T Consensus        16 ~~CpkC~~~~a~~~---~~Q-------tRsaDE~~T~fy~C--~~Cg~~wrey   56 (57)
T d1qypa_          16 ITCPKCGNDTAYWW---EMQ-------TRAGDEPSTIFYKC--TKCGHTWRSY   56 (57)
T ss_dssp             CCCTTTCCSEEEEE---EEC-------CSSSSCSSEEEEEE--SSSCCEEECC
T ss_pred             CCCCCCCCCceEEE---Eee-------cccccCCCeEEEEe--CCCCCcceeC
Confidence            56888886533322   222       222222   34778  7888887653