Psyllid ID: psy4407

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MSSVPRSYYVLFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHcccccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEccccccccccccccccccEccHcHHcccccHHHHHHHHHHcccccccccccEEEcccccccHHcHHHHHHHHHHHcccccccccccccHHHcHcHHHHHHHHHccccccccEEcc
Coil and Loop (DISEMBL)
MSSVPRSYYVLFLFYSsglkvsevdFRFETEMLTCKYCYEFLPNDAEIIADHCKfcsyklrpdktyiftcFACEYHSAKRSHIKEHIrqhtgekpfscLLCEYKAAKKSnltkhmskkhpssyedpffvs
Flexible Loop (DISEMBL)
MSSVPRSYYVLFLFyssglkvseVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKsnltkhmskkhpssyedpffvs
Low Complexity Region (SEG)
MSSVPRSYYVLFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS
Disordered region (IsUnstruct)
******SYYVLFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA*************************
Disordered Region (DISOPRED)
MSSVPRSYYVLFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS
Disordered Region (DISEMBL)
MSSVPRSYYVLFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSN********************
Disordered Region (DISPRO)
***VPRSYYVLFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYE***FV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSVPRSYYVLFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q2EI21	1501	RE1-silencing transcripti	N/A	N/A	0.446	0.038	0.426	4e-10
Q13127	1097	RE1-silencing transcripti	yes	N/A	0.446	0.052	0.426	1e-09
Q2EI20	855	RE1-silencing transcripti	yes	N/A	0.446	0.067	0.459	6e-09
Q9PVG3	529	RE1-silencing transcripti	N/A	N/A	0.446	0.109	0.442	6e-09
Q8BU00	419	Zinc finger protein Pegas	yes	N/A	0.776	0.241	0.321	2e-08
Q8VIG1	1082	RE1-silencing transcripti	no	N/A	0.446	0.053	0.426	2e-08
A4IFJ6	419	Zinc finger protein Pegas	no	N/A	0.776	0.241	0.321	2e-08
Q5ZLR2	421	Zinc finger protein Pegas	yes	N/A	0.776	0.239	0.321	2e-08
Q9H5V7	419	Zinc finger protein Pegas	no	N/A	0.776	0.241	0.321	2e-08
Q5R9W9	420	Zinc finger protein Pegas	no	N/A	0.776	0.240	0.321	2e-08

>sp|Q2EI21|RESTA_XENLA RE1-silencing transcription factor A OS=Xenopus laevis GN=rest-a PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 44/61 (72%), Gaps = 3/61 (4%)

Query: 67  IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP 126
           ++TC  C Y S ++++  +HIR HTGE+P+ C++C Y +++K++LT+HM + H  S E P
Sbjct: 273 LYTCSQCSYFSDRKNNYIQHIRTHTGERPYQCIICLYSSSQKTHLTRHM-RTH--SGEKP 329

Query: 127 F 127
           F
Sbjct: 330 F 330

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells (By similarity). Plays a role in the early development of the nervous system and is required for proper patterning of the neuroectoderm during gastrulation. This involves the correct speciation of the neuroepithelial domain and adequate development of the non-neural ectoderm.
Xenopus laevis (taxid: 8355)

>sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo sapiens GN=REST PE=1 SV=3

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 3/61 (4%)

Query: 67  IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP 126
           ++TC  C Y S ++++  +H+R HTGE+P+ C LC Y +++K++LT+HM + H  S E P
Sbjct: 275 VYTCGKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHM-RTH--SGEKP 331

Query: 127 F 127
           F
Sbjct: 332 F 332

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Homo sapiens (taxid: 9606)

>sp|Q2EI20|REST_DANRE RE1-silencing transcription factor OS=Danio rerio GN=rest PE=2 SV=1

 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 3/61 (4%)

Query: 67  IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP 126
           +FTC  C Y S ++++  +HIR H GE+PF C+ CEY +++K++LT+HM + H  S E P
Sbjct: 263 LFTCSQCSYFSDRKNNYIQHIRTHAGERPFQCIYCEYSSSQKTHLTRHM-RTH--SGERP 319

Query: 127 F 127
           F
Sbjct: 320 F 320

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells.

Danio rerio (taxid: 7955)

>sp|Q9PVG3|RESTB_XENLA RE1-silencing transcription factor B (Fragment) OS=Xenopus laevis GN=rest-b PE=2 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 44/61 (72%), Gaps = 3/61 (4%)

Query: 67  IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP 126
           ++TC  C Y S ++++  +HIR HTGE+P+ C+LC Y +++K++LT+HM + H  S E P
Sbjct: 271 LYTCSQCSYFSDRKNNYIQHIRTHTGERPYQCILCPYSSSQKTHLTRHM-RTH--SGEKP 327

Query: 127 F 127
           F
Sbjct: 328 F 328

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells (By similarity). Plays a role in the early development of the nervous system and is required for proper patterning of the neuroectoderm during gastrulation. This involves the correct speciation of the neuroepithelial domain and adequate development of the non-neural ectoderm.

Xenopus laevis (taxid: 8355)

>sp|Q8BU00|IKZF5_MOUSE Zinc finger protein Pegasus OS=Mus musculus GN=Ikzf5 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 11  LFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTC 70
           + L  +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C
Sbjct: 61  VSLDENSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----C 112

Query: 71  FACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
             C + SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct: 113 HLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Mus musculus (taxid: 10090)

>sp|Q8VIG1|REST_MOUSE RE1-silencing transcription factor OS=Mus musculus GN=Rest PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 3/61 (4%)

Query: 67  IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP 126
           ++TC  C Y S ++++  +H+R HTGE+P+ C LC Y +++K++LT+HM + H  S E P
Sbjct: 270 VYTCSKCNYFSDRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHM-RTH--SGEKP 326

Query: 127 F 127
           F
Sbjct: 327 F 327

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells. Restricts the expression of neuronal genes by associating with two distinct corepressors, mSin3 and CoREST, which in turn recruit histone deacetylase to the promoters of REST-regulated genes. Mediates repression by recruiting the BHC complex at RE1/NRSE sites which acts by deacetylating and demethylating specific sites on histones, thereby acting as a chromatin modifier.

Mus musculus (taxid: 10090)

>sp|A4IFJ6|IKZF5_BOVIN Zinc finger protein Pegasus OS=Bos taurus GN=IKZF5 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 11  LFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTC 70
           + L  +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C
Sbjct: 61  VSLDENSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----C 112

Query: 71  FACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
             C + SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct: 113 HLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Bos taurus (taxid: 9913)

>sp|Q5ZLR2|IKZF5_CHICK Zinc finger protein Pegasus OS=Gallus gallus GN=IKZF5 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 11  LFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTC 70
           + L  +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C
Sbjct: 61  VSLDENSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----C 112

Query: 71  FACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
             C + SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct: 113 HLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Gallus gallus (taxid: 9031)

>sp|Q9H5V7|IKZF5_HUMAN Zinc finger protein Pegasus OS=Homo sapiens GN=IKZF5 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 11  LFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTC 70
           + L  +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C
Sbjct: 61  VSLDENSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----C 112

Query: 71  FACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
             C + SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct: 113 HLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|Q5R9W9|IKZF5_PONAB Zinc finger protein Pegasus OS=Pongo abelii GN=IKZF5 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 11  LFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTC 70
           + L  +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C
Sbjct: 61  VSLDENSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----C 112

Query: 71  FACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
             C + SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct: 113 HLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
360044188	335	putative zinc finger protein [Schistosom	0.461	0.179	0.5	2e-09
256078806	335	zinc finger protein [Schistosoma mansoni	0.461	0.179	0.5	2e-09
260795192	408	hypothetical protein BRAFLDRAFT_68913 [B	0.553	0.176	0.412	3e-09
260832582	470	hypothetical protein BRAFLDRAFT_207418 [	0.461	0.127	0.492	3e-09
260832594	1259	hypothetical protein BRAFLDRAFT_71201 [B	0.361	0.037	0.54	6e-09
260787879	1012	hypothetical protein BRAFLDRAFT_89170 [B	0.407	0.052	0.545	8e-09
391346127	1161	PREDICTED: uncharacterized protein LOC10	0.576	0.064	0.318	8e-09
260782972	225	hypothetical protein BRAFLDRAFT_249147 [	0.515	0.297	0.410	8e-09
260791894	378	hypothetical protein BRAFLDRAFT_106952 [	0.461	0.158	0.476	1e-08
260815012	350	hypothetical protein BRAFLDRAFT_216678 [	0.392	0.145	0.5	2e-08

>gi|360044188|emb|CCD81735.1| putative zinc finger protein [Schistosoma mansoni]

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 64  KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSY 123
           K   F C  C Y + ++SH+K H R+HTGEKPFSC LC Y+AA+ S L +H  KKH +++
Sbjct: 251 KNKPFKCSICSYQTVEKSHLKTHFRKHTGEKPFSCTLCTYRAAQHSTLKQHCIKKHRNAF 310

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|256078806|ref|XP_002575685.1| zinc finger protein [Schistosoma mansoni]

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 64  KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSY 123
           K   F C  C Y + ++SH+K H R+HTGEKPFSC LC Y+AA+ S L +H  KKH +++
Sbjct: 251 KNKPFKCSICSYQTVEKSHLKTHFRKHTGEKPFSCTLCTYRAAQHSTLKQHCIKKHRNAF 310

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|260795192|ref|XP_002592590.1| hypothetical protein BRAFLDRAFT_68913 [Branchiostoma floridae] gi|229277811|gb|EEN48601.1| hypothetical protein BRAFLDRAFT_68913 [Branchiostoma floridae]

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 8/80 (10%)

Query: 51  DHCKFCSYKLRPDKTYI--------FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCE 102
           DHC++ S + R    ++        + C  C Y +A RS +  H+R HTGEKP+ C LC+
Sbjct: 161 DHCEYSSAENRDLNKHMARHTGEKPYMCGECGYRTADRSSLAVHLRTHTGEKPYKCGLCD 220

Query: 103 YKAAKKSNLTKHMSKKHPSS 122
           Y AAKK NL +H++ KH S+
Sbjct: 221 YSAAKKGNLDRHVTGKHTSN 240

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260832582|ref|XP_002611236.1| hypothetical protein BRAFLDRAFT_207418 [Branchiostoma floridae] gi|229296607|gb|EEN67246.1| hypothetical protein BRAFLDRAFT_207418 [Branchiostoma floridae]

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 3/63 (4%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
           F C  CEY +A RSH+ EH+R+H+GEKP+ C  C+Y AA K NL KH +K    + E PF
Sbjct: 361 FMCGQCEYRTANRSHLSEHMRRHSGEKPYKCDQCDYSAAHKGNLVKHKAK---HTGEKPF 417

Query: 128 FVS 130
              
Sbjct: 418 MCG 420

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260832594|ref|XP_002611242.1| hypothetical protein BRAFLDRAFT_71201 [Branchiostoma floridae] gi|229296613|gb|EEN67252.1| hypothetical protein BRAFLDRAFT_71201 [Branchiostoma floridae]

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSK 117
           + C  CEY +A +SH+ EH+R+HTGEKP+ C  C+Y  A KSNL +HM+K
Sbjct: 861 YKCGECEYRTAMKSHLSEHMRRHTGEKPYKCDQCDYSGASKSNLDQHMAK 910

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260787879|ref|XP_002588979.1| hypothetical protein BRAFLDRAFT_89170 [Branchiostoma floridae] gi|229274151|gb|EEN44990.1| hypothetical protein BRAFLDRAFT_89170 [Branchiostoma floridae]

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 38/55 (69%), Gaps = 2/55 (3%)

Query: 63  DKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSK 117
           DK YI  C  C Y +AK+SH+ EH+R HTGEKP+ C  C+Y A+KK NL  H +K
Sbjct: 742 DKPYI--CGQCGYRAAKKSHLAEHMRTHTGEKPYKCDQCDYSASKKCNLDYHSAK 794

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|391346127|ref|XP_003747330.1| PREDICTED: uncharacterized protein LOC100905253 [Metaseiulus occidentalis]

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 13/88 (14%)

Query: 44   NDAEIIADHCKFCSYKLRPDKTYI------------FTCFACEYHSAKRSHIKEHIRQHT 91
            +DA+  A  C  C+Y +   ++Y+            + C  CEY +A+  H+  H+R HT
Sbjct: 1036 DDAQEKALKCVHCNY-ITEHRSYLQRHMKAHAEGKRYQCLECEYRTARSDHLNNHMRTHT 1094

Query: 92   GEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
             EKPFSC  C+++ A+++ L  H++++H
Sbjct: 1095 SEKPFSCNQCDFRCAQQATLYNHLNRRH 1122

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260782972|ref|XP_002586553.1| hypothetical protein BRAFLDRAFT_249147 [Branchiostoma floridae] gi|229271670|gb|EEN42564.1| hypothetical protein BRAFLDRAFT_249147 [Branchiostoma floridae]

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 11/78 (14%)

Query: 53  CKFCSYKLRPDKTYI-----------FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC 101
           C+FC Y+      Y+             C  C Y ++ + H+ +HIR HTGEKPFSC +C
Sbjct: 3   CRFCGYRTAERPNYVRHLRIHAGFRPHKCPFCPYSASMKHHLNDHIRTHTGEKPFSCRMC 62

Query: 102 EYKAAKKSNLTKHMSKKH 119
           +Y+AA +SNL +HM K H
Sbjct: 63  DYRAAFRSNLAQHMKKVH 80

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260791894|ref|XP_002590962.1| hypothetical protein BRAFLDRAFT_106952 [Branchiostoma floridae] gi|229276162|gb|EEN46973.1| hypothetical protein BRAFLDRAFT_106952 [Branchiostoma floridae]

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 40/63 (63%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
           + C  C Y SA RS++  H+R+HTGEKPF C  C+Y AA K  L KH+  +H S++E PF
Sbjct: 168 YKCVECSYTSATRSNLSRHMRKHTGEKPFKCDQCDYSAAVKFALDKHILARHNSNHEKPF 227

Query: 128 FVS 130
              
Sbjct: 228 MCG 230

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260815012|ref|XP_002602207.1| hypothetical protein BRAFLDRAFT_216678 [Branchiostoma floridae] gi|229287514|gb|EEN58219.1| hypothetical protein BRAFLDRAFT_216678 [Branchiostoma floridae]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS 121
           + C  C Y +A RS +  H+R HTGEKP+ C LC+Y AAKK NL +H+++KH  
Sbjct: 116 YMCGECGYRTADRSSLAVHLRTHTGEKPYKCGLCDYSAAKKGNLDRHVTRKHTG 169

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
UNIPROTKB|A4IFJ6	419	IKZF5 "Zinc finger protein Peg	0.738	0.229	0.326	1.4e-11
UNIPROTKB|J9JHL8	419	IKZF5 "Uncharacterized protein	0.738	0.229	0.326	1.4e-11
UNIPROTKB|Q9H5V7	419	IKZF5 "Zinc finger protein Peg	0.738	0.229	0.326	1.4e-11
UNIPROTKB|F1SED1	419	IKZF5 "Uncharacterized protein	0.738	0.229	0.326	1.4e-11
MGI|MGI:1914393	419	Ikzf5 "IKAROS family zinc fing	0.738	0.229	0.326	1.4e-11
RGD|1310965	419	Ikzf5 "IKAROS family zinc fing	0.738	0.229	0.326	1.4e-11
UNIPROTKB|E1BWQ0	421	IKZF5 "Zinc finger protein Peg	0.738	0.228	0.326	1.4e-11
UNIPROTKB|Q5ZLR2	421	IKZF5 "Zinc finger protein Peg	0.738	0.228	0.326	1.4e-11
UNIPROTKB|F1NF01	424	IKZF5 "Zinc finger protein Peg	0.738	0.226	0.326	1.4e-11
ZFIN|ZDB-GENE-040801-209	419	ikzf5 "IKAROS family zinc fing	0.738	0.229	0.317	3e-11

UNIPROTKB|A4IFJ6 IKZF5 "Zinc finger protein Pegasus" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/104 (32%), Positives = 58/104 (55%)

Query:    16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEY 75
             +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C  C +
Sbjct:    66 NSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----CHLCPF 117

Query:    76 HSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
              SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct:   118 ASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9JHL8 IKZF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/104 (32%), Positives = 58/104 (55%)

Query:    16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEY 75
             +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C  C +
Sbjct:    66 NSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----CHLCPF 117

Query:    76 HSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
              SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct:   118 ASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9H5V7 IKZF5 "Zinc finger protein Pegasus" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/104 (32%), Positives = 58/104 (55%)

Query:    16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEY 75
             +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C  C +
Sbjct:    66 NSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----CHLCPF 117

Query:    76 HSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
              SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct:   118 ASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SED1 IKZF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/104 (32%), Positives = 58/104 (55%)

Query:    16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEY 75
             +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C  C +
Sbjct:    66 NSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----CHLCPF 117

Query:    76 HSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
              SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct:   118 ASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1914393 Ikzf5 "IKAROS family zinc finger 5" [Mus musculus (taxid:10090)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/104 (32%), Positives = 58/104 (55%)

Query:    16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEY 75
             +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C  C +
Sbjct:    66 NSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----CHLCPF 117

Query:    76 HSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
              SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct:   118 ASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1310965 Ikzf5 "IKAROS family zinc finger 5" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/104 (32%), Positives = 58/104 (55%)

Query:    16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEY 75
             +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C  C +
Sbjct:    66 NSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----CHLCPF 117

Query:    76 HSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
              SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct:   118 ASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BWQ0 IKZF5 "Zinc finger protein Pegasus" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/104 (32%), Positives = 58/104 (55%)

Query:    16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEY 75
             +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C  C +
Sbjct:    66 NSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----CHLCPF 117

Query:    76 HSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
              SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct:   118 ASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5ZLR2 IKZF5 "Zinc finger protein Pegasus" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/104 (32%), Positives = 58/104 (55%)

Query:    16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEY 75
             +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C  C +
Sbjct:    66 NSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----CHLCPF 117

Query:    76 HSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
              SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct:   118 ASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 161

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NF01 IKZF5 "Zinc finger protein Pegasus" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/104 (32%), Positives = 58/104 (55%)

Query:    16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEY 75
             +SG+ V   +  F+ + L C+YC       A +I +H +  + + +P +     C  C +
Sbjct:    69 NSGMLVDGFERTFDGK-LKCRYCNYASKGTARLI-EHIRIHTGE-KPHR-----CHLCPF 120

Query:    76 HSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
              SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  +KH
Sbjct:   121 ASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKH 164

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040801-209 ikzf5 "IKAROS family zinc finger 5" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 33/104 (31%), Positives = 58/104 (55%)

Query:    16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEY 75
             SSG+ V   +  ++ + L C+YC       A +I +H +  + + +P +     C  C +
Sbjct:    63 SSGMLVDGFERTYDGK-LKCRYCNYATRGTARLI-EHIRIHTGE-KPHR-----CHLCPF 114

Query:    76 HSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
              SA   H++ H+R HTGEKP+ C LC ++ + +SNL+ H  ++H
Sbjct:   115 ASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRRH 158

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
KOG2462|consensus	279		99.89
KOG2462|consensus	279		99.86
KOG3623|consensus	1007		99.66
KOG1074|consensus	958		99.65
KOG1074|consensus	958		99.6
KOG3576|consensus	267		99.56
KOG3608|consensus	467		99.54
KOG3623|consensus	1007		99.41
KOG3576|consensus	267		99.27
PHA00733	128	hypothetical protein	99.16
KOG3608|consensus	467		99.1
PHA02768	55	hypothetical protein; Provisional	98.98
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.77
PLN03086	567	PRLI-interacting factor K; Provisional	98.65
PHA02768	55	hypothetical protein; Provisional	98.62
PLN03086	567	PRLI-interacting factor K; Provisional	98.59
KOG3993|consensus	500		98.57
PHA00733	128	hypothetical protein	98.53
PHA00616	44	hypothetical protein	98.51
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.49
PHA00616	44	hypothetical protein	98.38
PHA00732	79	hypothetical protein	98.08
PHA00732	79	hypothetical protein	97.89
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.8
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.64
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.47
KOG3993|consensus	500		97.46
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.4
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.39
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.37
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.3
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.24
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.08
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.02
PRK04860	160	hypothetical protein; Provisional	96.97
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.89
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.76
smart00355	26	ZnF_C2H2 zinc finger.	96.74
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.62
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.34
smart00355	26	ZnF_C2H2 zinc finger.	96.3
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.92
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	95.58
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	95.51
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.28
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	95.11
PRK04860	160	hypothetical protein; Provisional	94.4
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	94.19
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	93.29
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.91
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	91.86
KOG2186|consensus	276		91.28
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	91.16
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	91.16
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	91.1
COG5048	467	FOG: Zn-finger [General function prediction only]	90.79
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	90.76
COG5048	467	FOG: Zn-finger [General function prediction only]	90.66
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	90.36
PHA00626	59	hypothetical protein	90.23
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	90.14
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	90.12
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	90.1
COG1198	730	PriA Primosomal protein N' (replication factor Y)	89.73
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	88.29
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	88.26
PF09845	131	DUF2072: Zn-ribbon containing protein (DUF2072); I	88.2
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	88.04
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	87.58
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	87.24
COG3364	112	Zn-ribbon containing protein [General function pre	87.13
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	86.45
COG4049	65	Uncharacterized protein containing archaeal-type C	85.69
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	83.9
KOG2893|consensus	341		82.59
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	82.0
TIGR00595	505	priA primosomal protein N'. All proteins in this f	81.9
smart00531	147	TFIIE Transcription initiation factor IIE.	81.74
KOG2893|consensus	341		80.02

>KOG2462|consensus

Probab=99.89  E-value=1.3e-23  Score=137.93  Aligned_cols=97  Identities=28%  Similarity=0.501  Sum_probs=80.5

Q ss_pred             cCcceecccccccccCccccccc-------------cCCCCCCc-----------ccCCCCceeeCCCCCCcccCchhHH
Q psy4407          29 ETEMLTCKYCYEFLPNDAEIIAD-------------HCKFCSYK-----------LRPDKTYIFTCFACEYHSAKRSHIK   84 (130)
Q Consensus        29 ~~~~~~C~~C~~~~~~~~~l~~h-------------~c~~C~~~-----------~~h~~~~~~~C~~C~~~f~~~~~l~   84 (130)
                      ....|.|+.||+.+.+.++|.+|             .|+.||+.           ++|+  -++.|.+||+.|...=-|+
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQ  204 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQ  204 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhh
Confidence            44568888888888888888777             58888887           4443  6688899999998888888


Q ss_pred             HHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          85 EHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        85 ~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      .|+++|||||||.|..|++.|..+++|+.|+ ++|.+  .|+|+|.
T Consensus       205 GHiRTHTGEKPF~C~hC~kAFADRSNLRAHm-QTHS~--~K~~qC~  247 (279)
T KOG2462|consen  205 GHIRTHTGEKPFSCPHCGKAFADRSNLRAHM-QTHSD--VKKHQCP  247 (279)
T ss_pred             cccccccCCCCccCCcccchhcchHHHHHHH-HhhcC--CccccCc
Confidence            9999999999999999999999999999999 88888  8888884

>KOG2462|consensus

Probab=99.86  E-value=1.9e-22  Score=132.41  Aligned_cols=100  Identities=26%  Similarity=0.440  Sum_probs=77.5

Q ss_pred             ccccceehhhhhcc---cCcceecccccccccCccccccc--------cCCCCCCc-----------ccCCCCceeeCCC
Q psy4407          15 YSSGLKVSEVDFRF---ETEMLTCKYCYEFLPNDAEIIAD--------HCKFCSYK-----------LRPDKTYIFTCFA   72 (130)
Q Consensus        15 ~~~~~~~~~~~~~~---~~~~~~C~~C~~~~~~~~~l~~h--------~c~~C~~~-----------~~h~~~~~~~C~~   72 (130)
                      ..++|.+|. ++|-   ..+.+.|..||+.|.+...|..|        .|.+||+.           ++|+|||||.|..
T Consensus       142 T~snLsrHk-Q~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~h  220 (279)
T KOG2462|consen  142 TSSNLSRHK-QTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPH  220 (279)
T ss_pred             cccccchhh-cccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCc
Confidence            444455552 3332   23445555566555555555444        45555555           9999999999999


Q ss_pred             CCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhh
Q psy4407          73 CEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        73 C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~  115 (130)
                      |++.|...++|+.|+++|.+.|+|.|..|++.|...+.|++|.
T Consensus       221 C~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  221 CGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHS  263 (279)
T ss_pred             ccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999998

>KOG3623|consensus

Probab=99.66  E-value=1.6e-17  Score=121.30  Aligned_cols=82  Identities=24%  Similarity=0.562  Sum_probs=79.1

Q ss_pred             cccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhc
Q psy4407          27 RFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAA  106 (130)
Q Consensus        27 ~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~  106 (130)
                      .+++..|.|+.|+|.|...+.|.+|.       -.|+|.+||+|.+|.+.|..+-+|..|++.|.|+|||.|..|+++|.
T Consensus       889 kte~gmyaCDqCDK~FqKqSSLaRHK-------YEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFS  961 (1007)
T KOG3623|consen  889 KTEDGMYACDQCDKAFQKQSSLARHK-------YEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFS  961 (1007)
T ss_pred             cCccccchHHHHHHHHHhhHHHHHhh-------hhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcc
Confidence            45778899999999999999999998       89999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHhh
Q psy4407         107 KKSNLTKHM  115 (130)
Q Consensus       107 ~~~~l~~h~  115 (130)
                      ...++..||
T Consensus       962 HSGSYSQHM  970 (1007)
T KOG3623|consen  962 HSGSYSQHM  970 (1007)
T ss_pred             cccchHhhh
Confidence            999999999

>KOG1074|consensus

Probab=99.65  E-value=5.5e-17  Score=119.79  Aligned_cols=54  Identities=35%  Similarity=0.626  Sum_probs=51.7

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |..|.+|-++..-.+.|+.|.++|+|++||+|.+||+.|..+..|+.|+ .+|..
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~-~vHka  658 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHM-SVHKA  658 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcc-ccccc
Confidence            5789999999999999999999999999999999999999999999999 88886

>KOG1074|consensus

Probab=99.60  E-value=9.2e-16  Score=113.44  Aligned_cols=57  Identities=33%  Similarity=0.611  Sum_probs=52.9

Q ss_pred             eeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCc
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF  127 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~  127 (130)
                      ..|.+||+.|.+.+.|..|+++|+++|||.|..|++.|.....|+.|| ..|.+  ..|+
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHM-gtH~w--~q~~  936 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHM-GTHMW--VQPP  936 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhh-ccccc--cCCC
Confidence            689999999999999999999999999999999999999999999999 68877  5543

>KOG3576|consensus

Probab=99.56  E-value=2.4e-16  Score=99.89  Aligned_cols=89  Identities=22%  Similarity=0.398  Sum_probs=81.4

Q ss_pred             hcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhh
Q psy4407          26 FRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA  105 (130)
Q Consensus        26 ~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f  105 (130)
                      .-.+.-.|.|..|++.|.-..-|.+|.       .-|+..+.+.|..||++|...-.|.+|+++|+|.+||+|..|++.|
T Consensus       111 sssd~d~ftCrvCgK~F~lQRmlnrh~-------kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaf  183 (267)
T KOG3576|consen  111 SSSDQDSFTCRVCGKKFGLQRMLNRHL-------KCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAF  183 (267)
T ss_pred             CCCCCCeeeeehhhhhhhHHHHHHHHh-------hhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHH
Confidence            344566799999999999889999998       7888899999999999999999999999999999999999999999


Q ss_pred             cCcchHHHhhhhcCCC
Q psy4407         106 AKKSNLTKHMSKKHPS  121 (130)
Q Consensus       106 ~~~~~l~~h~~~~h~g  121 (130)
                      .+..+|..|++++|..
T Consensus       184 tqrcsleshl~kvhgv  199 (267)
T KOG3576|consen  184 TQRCSLESHLKKVHGV  199 (267)
T ss_pred             HhhccHHHHHHHHcCc
Confidence            9999999999888863

>KOG3608|consensus

Probab=99.54  E-value=2.4e-15  Score=102.29  Aligned_cols=115  Identities=17%  Similarity=0.453  Sum_probs=89.5

Q ss_pred             eeccccceehhhhhcccCcceecccccccccCccccccc--------------------------------------cCC
Q psy4407          13 LFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIAD--------------------------------------HCK   54 (130)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h--------------------------------------~c~   54 (130)
                      +..+..|+.| +++|+++|.-.|+.||..|.++..|..|                                      .|+
T Consensus       189 ~~~k~~LreH-~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCp  267 (467)
T KOG3608|consen  189 MGNKYRLREH-IRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCP  267 (467)
T ss_pred             hccHHHHHHH-HHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhccccc
Confidence            3466677777 6999999999999999999988887777                                      577


Q ss_pred             CCCCc------------ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc--ChhhhcCcchHHHhhhhcCC
Q psy4407          55 FCSYK------------LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        55 ~C~~~------------~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h~  120 (130)
                      .|.++            ..|+.++||+|+.|+..+...+.|++|...|. +-.|.|.-  |...+.....++.|.+.+|.
T Consensus       268 lCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhE  346 (467)
T KOG3608|consen  268 LCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHE  346 (467)
T ss_pred             ccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhcc
Confidence            77666            55677888888888888888888888888776 56678855  88888888888888877787


Q ss_pred             CCCCCCccC
Q psy4407         121 SSYEDPFFV  129 (130)
Q Consensus       121 g~~e~~~~C  129 (130)
                      |..+-+|.|
T Consensus       347 g~np~~Y~C  355 (467)
T KOG3608|consen  347 GNNPILYAC  355 (467)
T ss_pred             CCCCCceee
Confidence            744555765

>KOG3623|consensus

Probab=99.41  E-value=5.5e-14  Score=103.15  Aligned_cols=65  Identities=28%  Similarity=0.671  Sum_probs=62.1

Q ss_pred             CCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          63 DKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        63 ~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      +.+.+|.|+.|++.|...+.|.+|.-.|+|.+||.|.+|.+.|..+.+|..|+ +.|.|  ||||.|+
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHk-RLHSG--EKPfQCd  954 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHK-RLHSG--EKPFQCD  954 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhh-hhccC--CCcchhh
Confidence            45668999999999999999999999999999999999999999999999999 99999  9999996

>KOG3576|consensus

Probab=99.27  E-value=4.2e-13  Score=85.33  Aligned_cols=94  Identities=17%  Similarity=0.389  Sum_probs=80.5

Q ss_pred             ceehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHH-hhc------
Q psy4407          19 LKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIR-QHT------   91 (130)
Q Consensus        19 ~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h~------   91 (130)
                      |.+| ++-|...+.+.|..||+.|....+|++|.       ++|+|.+||+|..|++.|...-.|..|++ .|.      
T Consensus       133 lnrh-~kch~~vkr~lct~cgkgfndtfdlkrh~-------rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~ya  204 (267)
T KOG3576|consen  133 LNRH-LKCHSDVKRHLCTFCGKGFNDTFDLKRHT-------RTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYA  204 (267)
T ss_pred             HHHH-hhhccHHHHHHHhhccCcccchhhhhhhh-------ccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHH
Confidence            4444 68899999999999999999999999999       99999999999999999999999999976 342      


Q ss_pred             ----CCCCeecccChhhhcCcchHHHhhhhcCC
Q psy4407          92 ----GEKPFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        92 ----~~k~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                          .++.|.|.+||..-.....+-.|++..|.
T Consensus       205 ykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  205 YKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             HHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence                25779999999988888788888844333

>PHA00733 hypothetical protein

Probab=99.16  E-value=1.6e-11  Score=74.35  Aligned_cols=90  Identities=20%  Similarity=0.278  Sum_probs=72.1

Q ss_pred             hcccCcceecccccccccCccccccc--cCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChh
Q psy4407          26 FRFETEMLTCKYCYEFLPNDAEIIAD--HCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEY  103 (130)
Q Consensus        26 ~~~~~~~~~C~~C~~~~~~~~~l~~h--~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~  103 (130)
                      .-.+.+++.|..|+..|.....|..+  .-..    ..+.+++||.|..||+.|.+...|..|++.+  +.++.|..|++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~----~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK  107 (128)
T PHA00733         34 LTPEQKRLIRAVVKTLIYNPQLLDESSYLYKL----LTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGK  107 (128)
T ss_pred             CChhhhhHHHHHHhhhccChhhhcchHHHHhh----cccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCC
Confidence            44567889999999988877766655  0000    2334588999999999999999999999876  35799999999


Q ss_pred             hhcCcchHHHhhhhcCCC
Q psy4407         104 KAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus       104 ~f~~~~~l~~h~~~~h~g  121 (130)
                      .|.....|..|+.+.|+.
T Consensus       108 ~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733        108 EFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             ccCCHHHHHHHHHHhcCc
Confidence            999999999999777764

>KOG3608|consensus

Probab=99.10  E-value=4.5e-11  Score=81.81  Aligned_cols=108  Identities=15%  Similarity=0.266  Sum_probs=91.1

Q ss_pred             cceeeeeeeccccceehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCC--CCCcccCchhH
Q psy4407           6 RSYYVLFLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFA--CEYHSAKRSHI   83 (130)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~--C~~~f~~~~~l   83 (130)
                      .|..-+-....+.|..|.+..|..++||+|+.|++.+...++|..|.       .+|+ +..|.|..  |...+.+..++
T Consensus       266 CplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~-------~~HS-~~~y~C~h~~C~~s~r~~~q~  337 (467)
T KOG3608|consen  266 CPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHV-------QVHS-KTVYQCEHPDCHYSVRTYTQM  337 (467)
T ss_pred             ccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHH-------Hhcc-ccceecCCCCCcHHHHHHHHH
Confidence            34444556678889999777799999999999999999999999997       7776 66799987  99999999999


Q ss_pred             HHHHHhhc-C--CCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          84 KEHIRQHT-G--EKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        84 ~~h~~~h~-~--~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ..|++.+. |  ..+|.|..|++-|..-..|..|+.+-|.-
T Consensus       338 ~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f  378 (467)
T KOG3608|consen  338 RRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGF  378 (467)
T ss_pred             HHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcc
Confidence            99988654 4  35699999999999999999999776653

>PHA02768 hypothetical protein; Provisional

Probab=98.98  E-value=2.4e-10  Score=58.33  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=39.0

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHH
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLT  112 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~  112 (130)
                      .|.|++||+.|...++|..|+++|+  ++++|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            3789999999999999999999998  7899999999998776664

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.77  E-value=5e-09  Score=45.87  Aligned_cols=26  Identities=38%  Similarity=0.929  Sum_probs=23.2

Q ss_pred             hHHHHHHhhcCCCCeecccChhhhcC
Q psy4407          82 HIKEHIRQHTGEKPFSCLLCEYKAAK  107 (130)
Q Consensus        82 ~l~~h~~~h~~~k~~~C~~C~~~f~~  107 (130)
                      +|..|+++|++++||.|..|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47899999999999999999998863

...

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.65  E-value=2.2e-08  Score=73.50  Aligned_cols=59  Identities=10%  Similarity=0.202  Sum_probs=41.2

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcC----------cchHHHhhhhcCCCCCCCCccCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAK----------KSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~----------~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      +++.|+ ||..+ ....|..|+.+|...+++.|..|++.+..          ...|..|. .++ |  .+++.|+
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE-~~C-G--~rt~~C~  545 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHE-SIC-G--SRTAPCD  545 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHH-Hhc-C--CcceEcc
Confidence            567787 87644 55777788777777788888888877742          23677777 543 6  7777773

>PHA02768 hypothetical protein; Provisional

Probab=98.62  E-value=5.4e-09  Score=53.36  Aligned_cols=44  Identities=14%  Similarity=0.203  Sum_probs=38.6

Q ss_pred             ceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHH
Q psy4407          32 MLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIK   84 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~   84 (130)
                      .|+|+.||+.|...++|..|+       ++|+  ++++|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~-------r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHL-------RKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHH-------HhcC--CcccCCcccceecccceeE
Confidence            489999999999999999999       8988  6899999999998666543

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.59  E-value=3.8e-08  Score=72.29  Aligned_cols=93  Identities=17%  Similarity=0.280  Sum_probs=69.7

Q ss_pred             eccccceehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccC----------chhH
Q psy4407          14 FYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAK----------RSHI   83 (130)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~----------~~~l   83 (130)
                      +....|..|. +.+.  +++.|+ ||+.+ ....|..|.       .++.+.+++.|..|+..+..          ...|
T Consensus       463 f~~s~LekH~-~~~H--kpv~Cp-Cg~~~-~R~~L~~H~-------~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~L  530 (567)
T PLN03086        463 FQQGEMEKHM-KVFH--EPLQCP-CGVVL-EKEQMVQHQ-------ASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGM  530 (567)
T ss_pred             cchHHHHHHH-HhcC--CCccCC-CCCCc-chhHHHhhh-------hccCCCCceeCCCCCCccccCccccchhhhhhhH
Confidence            4455666663 4543  778888 88655 457788887       77888999999999998842          3478


Q ss_pred             HHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCC
Q psy4407          84 KEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        84 ~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                      ..|...+ |.+++.|..|++.+. ...+..|+..+|.
T Consensus       531 t~HE~~C-G~rt~~C~~Cgk~Vr-lrdm~~H~~~~h~  565 (567)
T PLN03086        531 SEHESIC-GSRTAPCDSCGRSVM-LKEMDIHQIAVHQ  565 (567)
T ss_pred             HHHHHhc-CCcceEccccCCeee-ehhHHHHHHHhhc
Confidence            9998886 889999999998764 4567778756664

>KOG3993|consensus

Probab=98.57  E-value=1.2e-08  Score=71.53  Aligned_cols=80  Identities=24%  Similarity=0.468  Sum_probs=65.9

Q ss_pred             eecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhc--------CC-----------
Q psy4407          33 LTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHT--------GE-----------   93 (130)
Q Consensus        33 ~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~--------~~-----------   93 (130)
                      |.|..|...|.+...|.+|.|+-    .+ .  .-|.|++|+++|.-..+|..|.++|-        +.           
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~R----IV-~--vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~ra  340 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPR----IV-H--VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRA  340 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCe----eE-E--eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhh
Confidence            88999999999999999997643    22 2  23899999999999999999999872        11           


Q ss_pred             --------------CCeecccChhhhcCcchHHHhhhhcCC
Q psy4407          94 --------------KPFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        94 --------------k~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                                    -.|.|..|++.|.....|+.|+ ..|.
T Consensus       341 e~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHq-lthq  380 (500)
T KOG3993|consen  341 EVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQ-LTHQ  380 (500)
T ss_pred             hhhhccccCCcccCceeecHHhhhhhHHHHHHHHhH-Hhhh
Confidence                          1389999999999999999997 4443

>PHA00733 hypothetical protein

Probab=98.53  E-value=4.9e-08  Score=59.17  Aligned_cols=57  Identities=9%  Similarity=0.153  Sum_probs=48.5

Q ss_pred             cccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          27 RFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        27 ~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      +.+++||.|+.||+.|.+...|..|.       ..+  +.++.|..|++.|.....|..|+....+
T Consensus        68 ~~~~kPy~C~~Cgk~Fss~s~L~~H~-------r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         68 SKAVSPYVCPLCLMPFSSSVSLKQHI-------RYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             cCCCCCccCCCCCCcCCCHHHHHHHH-------hcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            34588999999999999999999996       554  4569999999999999999999876543

>PHA00616 hypothetical protein

Probab=98.51  E-value=4.1e-08  Score=47.81  Aligned_cols=31  Identities=16%  Similarity=0.403  Sum_probs=17.6

Q ss_pred             eeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      |+|..||..|.....+..|++.|++++++.|
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~   32 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL   32 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence            4555555555555555555555555555544

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.49  E-value=3.8e-08  Score=43.04  Aligned_cols=24  Identities=17%  Similarity=0.376  Sum_probs=20.5

Q ss_pred             ceehhhhhcccCcceeccccccccc
Q psy4407          19 LKVSEVDFRFETEMLTCKYCYEFLP   43 (130)
Q Consensus        19 ~~~~~~~~~~~~~~~~C~~C~~~~~   43 (130)
                      |..| +++|++++||.|+.|++.|.
T Consensus         2 l~~H-~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    2 LRRH-MRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHH-HHHHSSSSSEEESSSSEEES
T ss_pred             HHHH-hhhcCCCCCCCCCCCcCeeC
Confidence            5566 58999999999999999885

...

>PHA00616 hypothetical protein

Probab=98.38  E-value=1.2e-07  Score=46.20  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             CeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      ||.|..||+.|.+.+.|+.|+ +.|+|  ++|+.|+
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~-r~~hg--~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHL-LSVHK--QNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHH-HHhcC--CCcccee
Confidence            588999999999999999999 77888  8988774

>PHA00732 hypothetical protein

Probab=98.08  E-value=2.9e-06  Score=47.08  Aligned_cols=47  Identities=15%  Similarity=0.231  Sum_probs=29.4

Q ss_pred             ceecccccccccCccccccccCCCCCCccc-CCCCceeeCCCCCCcccCchhHHHHHHhhc
Q psy4407          32 MLTCKYCYEFLPNDAEIIADHCKFCSYKLR-PDKTYIFTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~-h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      ||.|..||+.|.+...|..|.       .. |.+   +.|..||+.|.   .+..|..+..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~-------r~~H~~---~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHA-------RRNHTL---TKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHh-------hcccCC---CccCCCCCEeC---ChhhhhcccC
Confidence            466777777777777777775       42 332   36777777775   3566665443

>PHA00732 hypothetical protein

Probab=97.89  E-value=6.9e-06  Score=45.56  Aligned_cols=43  Identities=28%  Similarity=0.632  Sum_probs=36.5

Q ss_pred             eeeCCCCCCcccCchhHHHHHHh-hcCCCCeecccChhhhcCcchHHHhh
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQ-HTGEKPFSCLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~-h~~~k~~~C~~C~~~f~~~~~l~~h~  115 (130)
                      ||.|..|++.|.+...|..|++. |++   +.|..|++.|.   .+..|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhh
Confidence            57899999999999999999984 653   58999999997   467777

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.80  E-value=1.6e-05  Score=33.41  Aligned_cols=22  Identities=27%  Similarity=0.699  Sum_probs=13.3

Q ss_pred             eeCCCCCCcccCchhHHHHHHh
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQ   89 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~   89 (130)
                      |.|..|++.|.+...|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4566666666666666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.64  E-value=0.00011  Score=37.79  Aligned_cols=48  Identities=29%  Similarity=0.624  Sum_probs=33.1

Q ss_pred             eeCCCCCCcccCchhHHHHHHh-hcC-CCCeecccChhhhcCcchHHHhhhhc
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQ-HTG-EKPFSCLLCEYKAAKKSNLTKHMSKK  118 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~-h~~-~k~~~C~~C~~~f~~~~~l~~h~~~~  118 (130)
                      |.|+.|++ ..+...|..|... |.. .+.+.|++|...+.  ..|..|+...
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~   52 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQ   52 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHh
Confidence            67888888 4566788888664 544 35688888887544  3777887433

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.47  E-value=6.7e-05  Score=32.74  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=12.1

Q ss_pred             eeCCCCCCcccCchhHHHHHHhh
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      |.|..|+..|.+...|..|++.|
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCccCCccCChhHHHHHhHHh
Confidence            45555555555555555555443

>KOG3993|consensus

Probab=97.46  E-value=3.6e-05  Score=54.56  Aligned_cols=76  Identities=14%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             ccccceehhhhhcccCcceecccccccccCcccccccc-----CCCCC-------C--------------cccCCCCcee
Q psy4407          15 YSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADH-----CKFCS-------Y--------------KLRPDKTYIF   68 (130)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~-----c~~C~-------~--------------~~~h~~~~~~   68 (130)
                      +...|..| .-...--..|+|++|+|.|....+|..|.     =++-+       +              ....+.+..|
T Consensus       279 D~F~LAQH-rC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~  357 (500)
T KOG3993|consen  279 DAFALAQH-RCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIF  357 (500)
T ss_pred             hHHHHhhc-cCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCcee
Confidence            44455555 34444556799999999999999999881     00000       0              0111334579


Q ss_pred             eCCCCCCcccCchhHHHHHHhhc
Q psy4407          69 TCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        69 ~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      .|..|++.|.....|+.|+.+|.
T Consensus       358 ~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  358 SCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             ecHHhhhhhHHHHHHHHhHHhhh
Confidence            99999999999999999987774

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.40  E-value=9.1e-05  Score=38.06  Aligned_cols=51  Identities=14%  Similarity=0.329  Sum_probs=36.3

Q ss_pred             ceecccccccccCccccccccCCCCCCcccCCC-CceeeCCCCCCcccCchhHHHHHHhhc
Q psy4407          32 MLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDK-TYIFTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~-~~~~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      .|.|+.|++. .+...|..|.=      ..|.. .+.+.|++|...+.  .+|..|+....
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~------~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCE------DEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHH------hHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            5899999994 55678888820      34443 35689999998644  48888887543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.39  E-value=0.00018  Score=30.14  Aligned_cols=23  Identities=30%  Similarity=0.735  Sum_probs=13.3

Q ss_pred             eeCCCCCCcccCchhHHHHHHhh
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      |.|+.|+..|.+...+..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45666666666666666666544

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.37  E-value=4.3e-05  Score=32.05  Aligned_cols=21  Identities=38%  Similarity=0.808  Sum_probs=19.5

Q ss_pred             eecccChhhhcCcchHHHhhh
Q psy4407          96 FSCLLCEYKAAKKSNLTKHMS  116 (130)
Q Consensus        96 ~~C~~C~~~f~~~~~l~~h~~  116 (130)
                      |.|..|++.|.....|..|++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            689999999999999999993

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.30  E-value=0.00016  Score=49.68  Aligned_cols=51  Identities=20%  Similarity=0.484  Sum_probs=36.7

Q ss_pred             CceeeCCC--CCCcccCchhHHHHHHhh-------------------cCCCCeecccChhhhcCcchHHHhh
Q psy4407          65 TYIFTCFA--CEYHSAKRSHIKEHIRQH-------------------TGEKPFSCLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        65 ~~~~~C~~--C~~~f~~~~~l~~h~~~h-------------------~~~k~~~C~~C~~~f~~~~~l~~h~  115 (130)
                      +|||+|++  |.+.+.....|.-|+...                   ..+|||+|.+|++++.....|+.|+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            36666655  666666666666665421                   2358999999999999999998887

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.24  E-value=0.00017  Score=31.45  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=22.5

Q ss_pred             CeecccChhhhcCcchHHHhhhhcCC
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                      +|.|..|++.|.....|..|+ +.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~-~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHK-RSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHH-CTTT
T ss_pred             CCCCCccCCccCChhHHHHHh-HHhc
Confidence            689999999999999999999 6654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.08  E-value=0.00089  Score=33.53  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=18.3

Q ss_pred             CCCceeeCCCCCCcccCchhHHHHHHhhcCCCC
Q psy4407          63 DKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKP   95 (130)
Q Consensus        63 ~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~   95 (130)
                      .++.|..|++|+..+....+|..|+....+.||
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            346667777777777777777777766555444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.02  E-value=0.00033  Score=29.25  Aligned_cols=23  Identities=35%  Similarity=0.688  Sum_probs=18.4

Q ss_pred             eecccChhhhcCcchHHHhhhhc
Q psy4407          96 FSCLLCEYKAAKKSNLTKHMSKK  118 (130)
Q Consensus        96 ~~C~~C~~~f~~~~~l~~h~~~~  118 (130)
                      |.|..|++.|.....|..|++..
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            68999999999999999999443

...

>PRK04860 hypothetical protein; Provisional

Probab=96.97  E-value=0.00084  Score=42.27  Aligned_cols=39  Identities=23%  Similarity=0.540  Sum_probs=33.6

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCc
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKK  108 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~  108 (130)
                      -+|.|. |+.   ....+..|.++++++++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            579997 987   567789999999999999999999987654

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.89  E-value=0.00033  Score=48.20  Aligned_cols=59  Identities=14%  Similarity=0.197  Sum_probs=43.1

Q ss_pred             Ccceeccc--ccccccCcccccccc----CCCCCC--------cccCCCCceeeCCCCCCcccCchhHHHHHH
Q psy4407          30 TEMLTCKY--CYEFLPNDAEIIADH----CKFCSY--------KLRPDKTYIFTCFACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        30 ~~~~~C~~--C~~~~~~~~~l~~h~----c~~C~~--------~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~   88 (130)
                      ++||+|+.  |.|.|.....|+-|+    |..--.        .......|||.|.+|++.+.....|.-|..
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            59999986  999999999998882    111000        011234689999999999999888887754

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.76  E-value=0.0012  Score=37.86  Aligned_cols=18  Identities=17%  Similarity=0.604  Sum_probs=0.0

Q ss_pred             ecccccccccCccccccc
Q psy4407          34 TCKYCYEFLPNDAEIIAD   51 (130)
Q Consensus        34 ~C~~C~~~~~~~~~l~~h   51 (130)
                      +|..|+..|.+...|..|
T Consensus         1 ~C~~C~~~f~~~~~l~~H   18 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQH   18 (100)
T ss_dssp             ------------------
T ss_pred             Cccccccccccccccccc
Confidence            477777777777777777

>smart00355 ZnF_C2H2 zinc finger

Probab=96.74  E-value=0.0014  Score=27.68  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=12.3

Q ss_pred             eCCCCCCcccCchhHHHHHHhh
Q psy4407          69 TCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        69 ~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      .|..|+..|.....+..|++.|
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHHh
Confidence            4555555555555555555543

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.62  E-value=0.0015  Score=37.34  Aligned_cols=23  Identities=26%  Similarity=0.609  Sum_probs=18.5

Q ss_pred             CeecccChhhhcCcchHHHhhhh
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHMSK  117 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~~~  117 (130)
                      .+.|..|+..|.....|..|++.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCcCHHHHHHHHcC
Confidence            47899999999999999999953

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.34  E-value=0.0025  Score=27.02  Aligned_cols=22  Identities=23%  Similarity=0.634  Sum_probs=13.8

Q ss_pred             eeCCCCCCcccCchhHHHHHHh
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQ   89 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~   89 (130)
                      |.|..|+..|.+...+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4566666666666666666553

>smart00355 ZnF_C2H2 zinc finger

Probab=96.30  E-value=0.002  Score=27.14  Aligned_cols=25  Identities=32%  Similarity=0.624  Sum_probs=21.4

Q ss_pred             eecccChhhhcCcchHHHhhhhcCCC
Q psy4407          96 FSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        96 ~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |.|..|++.|.....|..|+ ..|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~-~~H~~   25 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHM-RTHXX   25 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHH-HHhcc
Confidence            57999999999999999999 56653

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.92  E-value=0.0039  Score=31.27  Aligned_cols=33  Identities=24%  Similarity=0.559  Sum_probs=22.4

Q ss_pred             cCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCC
Q psy4407          91 TGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP  126 (130)
Q Consensus        91 ~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~  126 (130)
                      ..+.|-.|++|+..+.+..+|+.|+ .++.+  -||
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHl-e~~H~--~k~   52 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHL-EIRHF--KKP   52 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHH-HHHTT--TS-
T ss_pred             ccCCCCCCCcchhhccchhhHHHHH-HHHhc--ccC
Confidence            3567899999999999999999999 65555  565

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=95.58  E-value=0.013  Score=24.49  Aligned_cols=22  Identities=32%  Similarity=0.991  Sum_probs=12.4

Q ss_pred             eeCCCCCCcccCchhHHHHHHhh
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      |.|..|+.... ...|..|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            45666666665 66666666653

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=95.51  E-value=0.013  Score=30.33  Aligned_cols=26  Identities=15%  Similarity=0.354  Sum_probs=13.7

Q ss_pred             ecccccccccCccccccccCCCCCCc
Q psy4407          34 TCKYCYEFLPNDAEIIADHCKFCSYK   59 (130)
Q Consensus        34 ~C~~C~~~~~~~~~l~~h~c~~C~~~   59 (130)
                      .|..||...........+.|+.||..
T Consensus        11 ~CtSCg~~i~p~e~~v~F~CPnCGe~   36 (61)
T COG2888          11 VCTSCGREIAPGETAVKFPCPNCGEV   36 (61)
T ss_pred             eeccCCCEeccCCceeEeeCCCCCce
Confidence            46666666544444444455555533

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.28  E-value=0.0035  Score=27.21  Aligned_cols=20  Identities=30%  Similarity=0.692  Sum_probs=9.8

Q ss_pred             eeCCCCCCcccCchhHHHHH
Q psy4407          68 FTCFACEYHSAKRSHIKEHI   87 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~   87 (130)
                      |.|..|++.|.+...+..|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~   21 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHM   21 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCT
T ss_pred             CCcccCCCCcCCHHHHHHHH
Confidence            34555555555555544443

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=95.11  E-value=0.027  Score=29.19  Aligned_cols=26  Identities=15%  Similarity=0.309  Sum_probs=10.7

Q ss_pred             eecccccccccCccccccccCCCCCC
Q psy4407          33 LTCKYCYEFLPNDAEIIADHCKFCSY   58 (130)
Q Consensus        33 ~~C~~C~~~~~~~~~l~~h~c~~C~~   58 (130)
                      ..|..||....-...-....|+.||.
T Consensus         8 ~~CtSCg~~i~~~~~~~~F~CPnCG~   33 (59)
T PRK14890          8 PKCTSCGIEIAPREKAVKFLCPNCGE   33 (59)
T ss_pred             ccccCCCCcccCCCccCEeeCCCCCC
Confidence            34555555543323223333444433

>PRK04860 hypothetical protein; Provisional

Probab=94.40  E-value=0.017  Score=36.48  Aligned_cols=39  Identities=15%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             cceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCc
Q psy4407          31 EMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKR   80 (130)
Q Consensus        31 ~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~   80 (130)
                      -+|.|. |+.   ....+..|.       ++++++++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~-------ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHN-------RVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHH-------HHhcCCccEECCCCCceeEEe
Confidence            468897 987   456777787       888999999999999877543

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=94.19  E-value=0.048  Score=23.20  Aligned_cols=21  Identities=14%  Similarity=0.384  Sum_probs=14.0

Q ss_pred             eeCCCCCCcccCchhHHHHHHh
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQ   89 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~   89 (130)
                      ..|+.||+.| ....|..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3577788777 56667777653

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=93.29  E-value=0.061  Score=26.45  Aligned_cols=27  Identities=22%  Similarity=0.501  Sum_probs=15.3

Q ss_pred             ceecccccccccCccccccccCCCCCC
Q psy4407          32 MLTCKYCYEFLPNDAEIIADHCKFCSY   58 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h~c~~C~~   58 (130)
                      .|.|+.||..+........-.|+.||.
T Consensus         3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~   29 (46)
T PRK00398          3 EYKCARCGREVELDEYGTGVRCPYCGY   29 (46)
T ss_pred             EEECCCCCCEEEECCCCCceECCCCCC
Confidence            578888888775433322233444444

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.91  E-value=0.094  Score=23.86  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=17.2

Q ss_pred             eeeCCCCCCcccCchhHHHHHH
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~   88 (130)
                      +|.|..|+..|.+...+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4778888888887777777765

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=91.86  E-value=0.16  Score=23.12  Aligned_cols=9  Identities=33%  Similarity=1.165  Sum_probs=4.4

Q ss_pred             CCeecccCh
Q psy4407          94 KPFSCLLCE  102 (130)
Q Consensus        94 k~~~C~~C~  102 (130)
                      .++.|++|+
T Consensus        16 ~~~~CP~Cg   24 (33)
T cd00350          16 APWVCPVCG   24 (33)
T ss_pred             CCCcCcCCC
Confidence            344555554

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2186|consensus

Probab=91.28  E-value=0.12  Score=34.78  Aligned_cols=45  Identities=22%  Similarity=0.550  Sum_probs=19.7

Q ss_pred             eeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhh
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~  115 (130)
                      |.|..||.... ...+..|+...++ .-|.|..|+..|.. .++..|.
T Consensus         4 FtCnvCgEsvK-Kp~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~   48 (276)
T KOG2186|consen    4 FTCNVCGESVK-KPQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHT   48 (276)
T ss_pred             Eehhhhhhhcc-ccchHHHHHhccC-CeeEEeeccccccc-chhhhhh
Confidence            34444444332 2333444444443 34555555555544 3344444

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=91.16  E-value=0.2  Score=29.53  Aligned_cols=17  Identities=12%  Similarity=0.204  Sum_probs=10.5

Q ss_pred             CCceeeCCCCCCcccCc
Q psy4407          64 KTYIFTCFACEYHSAKR   80 (130)
Q Consensus        64 ~~~~~~C~~C~~~f~~~   80 (130)
                      +..|..|+.||..|...
T Consensus        23 nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   23 NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCCCccCCCCCCccCcc
Confidence            34556677777666544

The function of members of this family is unknown.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=91.16  E-value=0.26  Score=23.03  Aligned_cols=11  Identities=18%  Similarity=0.268  Sum_probs=6.1

Q ss_pred             eeeCCCCCCcc
Q psy4407          67 IFTCFACEYHS   77 (130)
Q Consensus        67 ~~~C~~C~~~f   77 (130)
                      ...|+.|+..|
T Consensus        25 ~vrC~~C~~~f   35 (37)
T PF13719_consen   25 KVRCPKCGHVF   35 (37)
T ss_pred             EEECCCCCcEe
Confidence            45566665544

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=91.10  E-value=0.17  Score=24.41  Aligned_cols=16  Identities=13%  Similarity=0.150  Sum_probs=11.6

Q ss_pred             ceecccccccccCccc
Q psy4407          32 MLTCKYCYEFLPNDAE   47 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~   47 (130)
                      .|.|..||..|.....
T Consensus         5 ey~C~~Cg~~fe~~~~   20 (42)
T PF09723_consen    5 EYRCEECGHEFEVLQS   20 (42)
T ss_pred             EEEeCCCCCEEEEEEE
Confidence            4889999988865433

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.79  E-value=0.087  Score=37.62  Aligned_cols=54  Identities=33%  Similarity=0.650  Sum_probs=34.4

Q ss_pred             eeeCCCCCCcccCchhHHHHHH--hhcCC--CCeecc--cChhhhcCcchHHHhhhhcCCC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIR--QHTGE--KPFSCL--LCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~--~h~~~--k~~~C~--~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ++.|..|...|.....+..|.+  .|+++  +++.|.  .|++.|.....+..|. .+|.+
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~  348 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHI-LLHTS  348 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCc-ccccC
Confidence            4556666666666666666666  56666  666666  5666666666666666 55555

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=90.76  E-value=0.17  Score=33.56  Aligned_cols=48  Identities=19%  Similarity=0.414  Sum_probs=29.5

Q ss_pred             CcceecccccccccCccccccc------cCCCCCCcccCCCCce-----eeCCCCCCcccCc
Q psy4407          30 TEMLTCKYCYEFLPNDAEIIAD------HCKFCSYKLRPDKTYI-----FTCFACEYHSAKR   80 (130)
Q Consensus        30 ~~~~~C~~C~~~~~~~~~l~~h------~c~~C~~~~~h~~~~~-----~~C~~C~~~f~~~   80 (130)
                      ++...|+.|++.|.++.-+...      .-+.|   ....+..|     +.|+.||.++...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~---~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFC---PRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCc---cccCCCCCeeeeEEECCCCCCccccc
Confidence            4678999999999876544333      12222   11123333     6899999877644

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=90.66  E-value=0.15  Score=36.47  Aligned_cols=62  Identities=18%  Similarity=0.224  Sum_probs=51.0

Q ss_pred             cceecccccccccCccccccccCCCCCCcc--cCCCC--ceeeCC--CCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          31 EMLTCKYCYEFLPNDAEIIADHCKFCSYKL--RPDKT--YIFTCF--ACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        31 ~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~--~h~~~--~~~~C~--~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      .++.|..|...|.....|..|.       +  .|.++  +++.|+  .|+..|.....+..|...|++..++.+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~-------~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHL-------RSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK  355 (467)
T ss_pred             cCCCCccccCCccccccccccc-------cccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence            4678888888888888888887       6  68888  899998  7999999888888888888877666553

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=90.36  E-value=0.16  Score=25.40  Aligned_cols=30  Identities=20%  Similarity=0.425  Sum_probs=20.4

Q ss_pred             CcceecccccccccCccccccccCCCCCCc
Q psy4407          30 TEMLTCKYCYEFLPNDAEIIADHCKFCSYK   59 (130)
Q Consensus        30 ~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~   59 (130)
                      ...|.|..||+.+........-.|+.||..
T Consensus         4 ~~~Y~C~~Cg~~~~~~~~~~~irCp~Cg~r   33 (49)
T COG1996           4 MMEYKCARCGREVELDQETRGIRCPYCGSR   33 (49)
T ss_pred             eEEEEhhhcCCeeehhhccCceeCCCCCcE
Confidence            456999999999854444444467777654

>PHA00626 hypothetical protein

Probab=90.23  E-value=0.35  Score=24.77  Aligned_cols=13  Identities=23%  Similarity=0.774  Sum_probs=8.8

Q ss_pred             ceeeCCCCCCccc
Q psy4407          66 YIFTCFACEYHSA   78 (130)
Q Consensus        66 ~~~~C~~C~~~f~   78 (130)
                      ..|.|..||..|.
T Consensus        22 nrYkCkdCGY~ft   34 (59)
T PHA00626         22 DDYVCCDCGYNDS   34 (59)
T ss_pred             cceEcCCCCCeec
Confidence            4577777777664

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=90.14  E-value=0.36  Score=22.48  Aligned_cols=13  Identities=15%  Similarity=0.381  Sum_probs=7.2

Q ss_pred             eecccccccccCc
Q psy4407          33 LTCKYCYEFLPND   45 (130)
Q Consensus        33 ~~C~~C~~~~~~~   45 (130)
                      ..|+.|+..|.-.
T Consensus         3 ~~CP~C~~~~~v~   15 (38)
T TIGR02098         3 IQCPNCKTSFRVV   15 (38)
T ss_pred             EECCCCCCEEEeC
Confidence            4566666665443

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=90.12  E-value=0.47  Score=22.04  Aligned_cols=14  Identities=36%  Similarity=0.553  Sum_probs=7.7

Q ss_pred             ecccccccccCccc
Q psy4407          34 TCKYCYEFLPNDAE   47 (130)
Q Consensus        34 ~C~~C~~~~~~~~~   47 (130)
                      .|+.|+..|.-...
T Consensus         4 ~Cp~C~~~y~i~d~   17 (36)
T PF13717_consen    4 TCPNCQAKYEIDDE   17 (36)
T ss_pred             ECCCCCCEEeCCHH
Confidence            46666666654433

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=90.10  E-value=0.22  Score=23.55  Aligned_cols=14  Identities=14%  Similarity=0.209  Sum_probs=10.5

Q ss_pred             ceecccccccccCc
Q psy4407          32 MLTCKYCYEFLPND   45 (130)
Q Consensus        32 ~~~C~~C~~~~~~~   45 (130)
                      .|+|..||..|...
T Consensus         5 ~y~C~~Cg~~fe~~   18 (41)
T smart00834        5 EYRCEDCGHTFEVL   18 (41)
T ss_pred             EEEcCCCCCEEEEE
Confidence            47899999887543

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=89.73  E-value=0.39  Score=37.55  Aligned_cols=9  Identities=22%  Similarity=0.575  Sum_probs=5.6

Q ss_pred             ccccccccc
Q psy4407          35 CKYCYEFLP   43 (130)
Q Consensus        35 C~~C~~~~~   43 (130)
                      |..||..+.
T Consensus       438 C~~Cg~v~~  446 (730)
T COG1198         438 CRDCGYIAE  446 (730)
T ss_pred             cccCCCccc
Confidence            666666653

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=88.29  E-value=0.5  Score=26.56  Aligned_cols=29  Identities=28%  Similarity=0.512  Sum_probs=16.0

Q ss_pred             ccCCCCCCcc-cCCCCceeeCCCCCCcccC
Q psy4407          51 DHCKFCSYKL-RPDKTYIFTCFACEYHSAK   79 (130)
Q Consensus        51 h~c~~C~~~~-~h~~~~~~~C~~C~~~f~~   79 (130)
                      |.|+.|+... ...+...|.|..||..|.-
T Consensus        36 ~~Cp~C~~~~VkR~a~GIW~C~kCg~~fAG   65 (89)
T COG1997          36 HVCPFCGRTTVKRIATGIWKCRKCGAKFAG   65 (89)
T ss_pred             CcCCCCCCcceeeeccCeEEcCCCCCeecc
Confidence            3455555441 1123445888888877753

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=88.26  E-value=0.37  Score=23.53  Aligned_cols=26  Identities=19%  Similarity=0.384  Sum_probs=15.0

Q ss_pred             ceecccccccccCccccccccCCCCCC
Q psy4407          32 MLTCKYCYEFLPNDAEIIADHCKFCSY   58 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h~c~~C~~   58 (130)
                      .|.|..||..+... ....-.|+.||.
T Consensus         2 ~Y~C~~Cg~~~~~~-~~~~irC~~CG~   27 (44)
T smart00659        2 IYICGECGRENEIK-SKDVVRCRECGY   27 (44)
T ss_pred             EEECCCCCCEeecC-CCCceECCCCCc
Confidence            47888888877543 222224555554

present in RNA polymerase I, II and III

>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function

Probab=88.20  E-value=0.28  Score=29.79  Aligned_cols=28  Identities=18%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             ceecccccccccCccccccccCCCCCCc
Q psy4407          32 MLTCKYCYEFLPNDAEIIADHCKFCSYK   59 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h~c~~C~~~   59 (130)
                      |++|..||+.|.+-+.-..--|+.||..
T Consensus         1 PH~Ct~Cg~~f~dgs~eil~GCP~CGg~   28 (131)
T PF09845_consen    1 PHQCTKCGRVFEDGSKEILSGCPECGGN   28 (131)
T ss_pred             CcccCcCCCCcCCCcHHHHccCcccCCc
Confidence            5789999999987664444569999887

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=88.04  E-value=0.52  Score=20.23  Aligned_cols=9  Identities=33%  Similarity=0.770  Sum_probs=4.8

Q ss_pred             eCCCCCCcc
Q psy4407          69 TCFACEYHS   77 (130)
Q Consensus        69 ~C~~C~~~f   77 (130)
                      .|+.||..|
T Consensus        16 ~Cp~CG~~F   24 (26)
T PF10571_consen   16 FCPHCGYDF   24 (26)
T ss_pred             cCCCCCCCC
Confidence            455555554

Several members are annotated as putative helicases.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=87.58  E-value=0.59  Score=21.16  Aligned_cols=11  Identities=18%  Similarity=0.365  Sum_probs=7.2

Q ss_pred             eeccccccccc
Q psy4407          33 LTCKYCYEFLP   43 (130)
Q Consensus        33 ~~C~~C~~~~~   43 (130)
                      |.|..||..+.
T Consensus         1 Y~C~~Cg~~~~   11 (32)
T PF03604_consen    1 YICGECGAEVE   11 (32)
T ss_dssp             EBESSSSSSE-
T ss_pred             CCCCcCCCeeE
Confidence            56777777765

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=87.24  E-value=0.43  Score=23.91  Aligned_cols=14  Identities=14%  Similarity=0.173  Sum_probs=10.9

Q ss_pred             ceecccccccccCc
Q psy4407          32 MLTCKYCYEFLPND   45 (130)
Q Consensus        32 ~~~C~~C~~~~~~~   45 (130)
                      .|+|..||..|...
T Consensus         5 ey~C~~Cg~~fe~~   18 (52)
T TIGR02605         5 EYRCTACGHRFEVL   18 (52)
T ss_pred             EEEeCCCCCEeEEE
Confidence            48899999988643

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>COG3364 Zn-ribbon containing protein [General function prediction only]

Probab=87.13  E-value=0.3  Score=28.27  Aligned_cols=28  Identities=25%  Similarity=0.524  Sum_probs=23.5

Q ss_pred             ceecccccccccCccccccccCCCCCCc
Q psy4407          32 MLTCKYCYEFLPNDAEIIADHCKFCSYK   59 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h~c~~C~~~   59 (130)
                      |+.|..||..|.+-+.+...-|+.||..
T Consensus         2 pH~CtrCG~vf~~g~~~il~GCp~CG~n   29 (112)
T COG3364           2 PHQCTRCGEVFDDGSEEILSGCPKCGCN   29 (112)
T ss_pred             CceecccccccccccHHHHccCccccch
Confidence            6789999999988666666779999887

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=86.45  E-value=1.1  Score=18.87  Aligned_cols=7  Identities=43%  Similarity=1.198  Sum_probs=3.2

Q ss_pred             eeCCCCC
Q psy4407          68 FTCFACE   74 (130)
Q Consensus        68 ~~C~~C~   74 (130)
                      |.|+.||
T Consensus        17 f~CPnCG   23 (24)
T PF07754_consen   17 FPCPNCG   23 (24)
T ss_pred             EeCCCCC
Confidence            4444444

It is likely to bind zinc via its four well-conserved cysteine residues.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=85.69  E-value=0.46  Score=24.34  Aligned_cols=28  Identities=18%  Similarity=0.374  Sum_probs=16.7

Q ss_pred             CCCCceeeCCCCCCcccCchhHHHHHHh
Q psy4407          62 PDKTYIFTCFACEYHSAKRSHIKEHIRQ   89 (130)
Q Consensus        62 h~~~~~~~C~~C~~~f~~~~~l~~h~~~   89 (130)
                      ..|+..+.|+.||..|.....+..|...
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNK   39 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNK   39 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence            3455566666666666666666665543

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=83.90  E-value=1  Score=20.60  Aligned_cols=10  Identities=20%  Similarity=0.434  Sum_probs=5.8

Q ss_pred             eecccccccc
Q psy4407          33 LTCKYCYEFL   42 (130)
Q Consensus        33 ~~C~~C~~~~   42 (130)
                      |.|..||..+
T Consensus         3 ~~C~~CG~i~   12 (34)
T cd00729           3 WVCPVCGYIH   12 (34)
T ss_pred             EECCCCCCEe
Confidence            5566666554

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2893|consensus

Probab=82.59  E-value=0.51  Score=31.72  Aligned_cols=42  Identities=21%  Similarity=0.459  Sum_probs=24.7

Q ss_pred             ecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHH
Q psy4407          34 TCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEH   86 (130)
Q Consensus        34 ~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h   86 (130)
                      .|..|.+.|....-|.+|+           ..|.|+|.+|-+-..+-..|..|
T Consensus        12 wcwycnrefddekiliqhq-----------kakhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQ-----------KAKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeeecccccchhhhhhhhh-----------hhccceeeeehhhhccCCCceee
Confidence            3556777776666665552           34556777776555555555555

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=82.00  E-value=1.2  Score=26.97  Aligned_cols=28  Identities=7%  Similarity=-0.152  Sum_probs=14.9

Q ss_pred             CCCCCCcccCCCCceeeCCCCCCcccCc
Q psy4407          53 CKFCSYKLRPDKTYIFTCFACEYHSAKR   80 (130)
Q Consensus        53 c~~C~~~~~h~~~~~~~C~~C~~~f~~~   80 (130)
                      |+.||..+--.+..|..|+.||..+...
T Consensus        12 Cp~cg~kFYDLnk~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        12 CPNTGSKFYDLNRRPAVSPYTGEQFPPE   39 (129)
T ss_pred             CCCcCccccccCCCCccCCCcCCccCcc
Confidence            3333333333344566777777776544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>TIGR00595 priA primosomal protein N'

Probab=81.90  E-value=1.6  Score=32.76  Aligned_cols=9  Identities=33%  Similarity=0.770  Sum_probs=5.2

Q ss_pred             ecccccccc
Q psy4407          34 TCKYCYEFL   42 (130)
Q Consensus        34 ~C~~C~~~~   42 (130)
                      .|..||...
T Consensus       215 ~C~~Cg~~~  223 (505)
T TIGR00595       215 LCRSCGYIL  223 (505)
T ss_pred             EhhhCcCcc
Confidence            466666554

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00531 TFIIE Transcription initiation factor IIE

Probab=81.74  E-value=0.8  Score=28.46  Aligned_cols=40  Identities=15%  Similarity=0.114  Sum_probs=26.2

Q ss_pred             cccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcc
Q psy4407          27 RFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHS   77 (130)
Q Consensus        27 ~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f   77 (130)
                      -.+...|.|+.|+..|.....+..-          .. ...|.|+.||...
T Consensus        94 e~~~~~Y~Cp~C~~~y~~~ea~~~~----------d~-~~~f~Cp~Cg~~l  133 (147)
T smart00531       94 ETNNAYYKCPNCQSKYTFLEANQLL----------DM-DGTFTCPRCGEEL  133 (147)
T ss_pred             ccCCcEEECcCCCCEeeHHHHHHhc----------CC-CCcEECCCCCCEE
Confidence            3455679999999998765543321          11 3338898888655

>KOG2893|consensus

Probab=80.02  E-value=0.4  Score=32.22  Aligned_cols=45  Identities=22%  Similarity=0.505  Sum_probs=28.4

Q ss_pred             CceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHh
Q psy4407          65 TYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH  114 (130)
Q Consensus        65 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h  114 (130)
                      .|+| |=.|++.|....-|.+|++    .|.|+|.+|-+...+-..|..|
T Consensus         9 ~kpw-cwycnrefddekiliqhqk----akhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhh----hccceeeeehhhhccCCCceee
Confidence            4454 4467788887777777765    3557888877765554444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
1llm_C	88	Crystal Structure Of A Zif23-Gcn4 Chimera Bound To		9e-06
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		1e-05
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-05
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		2e-05
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		3e-05
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		3e-05
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		3e-05
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		4e-05
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		4e-05
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		4e-05
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		4e-05
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		5e-05
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		6e-05
1bbo_A	57	High-Resolution Solution Structure Of The Double Cy		7e-05
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-04
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-04
2epa_A	72	Solution Structure Of The First And Second Zf-C2h2		1e-04
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		2e-04
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-04
1f2i_G	73	Cocrystal Structure Of Selected Zinc Finger Dimer B		5e-04
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		5e-04
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		6e-04

>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna Length = 88

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
           F C  C  + ++  H+  HIR HTGEKPF+C +C  K A+     +H   +H
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
           H+R HTGEKP+ C  CEY AA+K++L  H+ + H
Sbjct: 23  HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           + C  C+Y +A  S + +H+R H+ E+PF C +C Y +   S LT H+
Sbjct: 37  YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED 125
           F C  C    A++ H+K H R HT EKP+ C LC     ++  L +H  K H  +  +
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           F C  C  + ++  H+  HIR HTGEKPF+C +C  K A+     +H
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           F C  C  + ++  H+  HIR HTGEKPF+C +C  K A+     +H
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           F C  C  + ++  H+  HIR HTGEKPF+C +C  K A+     +H
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           F C  C  + ++  H+  HIR HTGEKPF+C +C  K A+     +H
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           F C  C  + ++  H+  HIR HTGEKPF+C +C  K A+     +H
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           F C  C  + ++  H+  HIR HTGEKPF+C +C  K A+     +H
Sbjct: 34  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 80

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           F C  C  + ++  H+  HIR HTGEKPF+C +C  K A+     +H
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKH 114
           F C  C+   ++  H+K H R HTGEKPFSC    C+ K A+   L +H
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 78  AKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSK 117
            K SH+K H+R HTGEKP+ C    C+++ A+   LT+H  K
Sbjct: 28  TKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69

>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2 Zinc Finger From The Human Enhancer Binding Protein Mbp-1 Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKK 118
           + C  C     K S +K+HIR HT  +P+ C  C +    K NLTKHM  K
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 64  KTYIFTC--FACEYHSAKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSK 117
           +T   TC    C     K SH+K H+R HTGEKP+ C    C +K A+   LT+H  K
Sbjct: 3   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 64  KTYIFTC--FACEYHSAKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSK 117
           +T   TC    C     K SH+K H+R HTGEKP+ C    C +K A+   LT+H  K
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59

>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains From Human Krueppel-Like Factor 10 Length = 72

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 79  KRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKH 114
           K SH+K H R HTGEKPFSC    CE + A+   L++H
Sbjct: 31  KSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 67  IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH--PSS 122
           +FTC  C+    +R  ++ H+  HTGE P+ C  C  +  +K +L  HM K H  PSS
Sbjct: 66  VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           F C  C  + ++++ +  HIR HTGEKPF+C +C  K A     T+H
Sbjct: 35  FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRH 81

>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To Dna Length = 73

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 59  KLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           K+RP   Y     +C+   ++   +  HIR HTG+KPF C +C    ++  +LT H+
Sbjct: 16  KMRP---YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           F C  C  + ++ + + +HIR HTGEKPF+C +C  K A      +H
Sbjct: 35  FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRH 81

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           + C  C    ++  H+ EH R HTGEKP+ C  C    + K +LT+H 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-13
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-10
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-09
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-07
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	2e-08
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-08
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	3e-08
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	7e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-08
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	1e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-07
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	4e-06
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	7e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-06
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-04
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	4e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	6e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-04
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	3e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	2e-05
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	4e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	4e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-04
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-04
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	7e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	2e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-04
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	9e-05
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	4e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	1e-04
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	4e-04
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-04
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	2e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	3e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	4e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	4e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	5e-04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-04
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-04
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-04
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-04
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	7e-04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	7e-04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	8e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-04
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	8e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	8e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	9e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	9e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	9e-04

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 59.4 bits (145), Expect = 3e-13
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
             C  C Y  + ++ ++ H R H  ++PF C  C +   + SNL+KHM KK 
Sbjct: 10  EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 44.0 bits (105), Expect = 2e-07
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 88  RQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
              +   P  C  C Y  + K+ L  H 
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHE 29

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 52.4 bits (126), Expect = 2e-10
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHT---GEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYE 124
             C  C +   +++ +  H R+H        F C  C  +  K  ++  H SK HP+   
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 125 DP 126
            P
Sbjct: 68  AP 69

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 90  HTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF 127
            +G     C +C +   +K++L  H  K   +     F
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRF 39

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 49.1 bits (118), Expect = 4e-09
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGE--KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED 125
           + C+ C     +   +K HI Q   E    F C  C+   A+KS+L  H+ K+H  SY  
Sbjct: 16  YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH--SYSG 73

Query: 126 PF 127
           P 
Sbjct: 74  PS 75

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.4 bits (106), Expect = 2e-07
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 82  HIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
                 R H+GEKP+ C +C  +  +   +  H+
Sbjct: 2   SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 46.6 bits (110), Expect = 2e-08
 Identities = 20/50 (40%), Positives = 26/50 (52%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSK 117
           + C  C     K S +K+HIR HT  +P+ C  C +    K NLTKHM  
Sbjct: 2   YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 47.1 bits (113), Expect = 2e-08
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           F C  C  + ++  H+  HIR HTGEKPF+C +C  K A+     +H 
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 47.1 bits (113), Expect = 2e-08
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 64  KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHM 115
            T+      C     K SH+K H+R HTGEKP+ C    C +K A+   LT+H 
Sbjct: 4   ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.7 bits (99), Expect = 3e-06
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 78  AKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
           A+   +  H R+HTG +PF C  C+   ++  +L  HM K+H
Sbjct: 48  ARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM-KRH 88

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 46.3 bits (111), Expect = 3e-08
 Identities = 20/52 (38%), Positives = 27/52 (51%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
           F C  C    A++ H+K H R HT EKP+ C LC     ++  L +H  K H
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 45.8 bits (109), Expect = 7e-08
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 64  KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           + Y     +C+   ++   +  HIR HTG+KPF C +C    ++  +LT H+
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 45.9 bits (110), Expect = 7e-08
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           F C  C  + ++  H+  HIR HTGEKPF+C +C  K A+     +H 
Sbjct: 35  FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 42.8 bits (102), Expect = 1e-06
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 81  SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
             +  HIR HTG+KPF C +C    ++  +LT H+
Sbjct: 20  GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 45.1 bits (107), Expect = 1e-07
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 78  AKRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSKKH 119
            K SH+K H R HTGEKPFSC    CE + A+   L++H  + H
Sbjct: 30  FKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR-RTH 72

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 44.9 bits (107), Expect = 1e-07
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 68  FTCFACEYHSAKRSHIKEHIR--QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHP 120
           + C  C       S+   H         K + C  C  +  +K N+T H+   H 
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 88  RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
               GE  + C +C       SN  +H    H
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 64  KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHM 115
           + +      C     K SH+K H+R HTGEKP+ C    C+++ A+   LT+H 
Sbjct: 14  RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 81  SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
             +  H R+HTG KPF C +C    ++  +L  HM K+H
Sbjct: 61  DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM-KRH 98

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
           FTC  C+    +R  ++ H+  HTGE P+ C  C  +  +K +L  HM K H
Sbjct: 67  FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
             C  C      + ++K H R+HTGEKPF C  C     +K NL +H 
Sbjct: 8   VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE 55

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQ---HTGEKPFSCLLCEYKAAKKSNLTKHM 115
           F C  C     ++ ++ EH  +   +  E+ F+C +C+    ++  L  HM
Sbjct: 36  FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 43.4 bits (103), Expect = 6e-07
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 79  KRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSKKH 119
           K + +K H   HT + P+ C    C+ + +  S L +H  K H
Sbjct: 15  KHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVH 56

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 73  CEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
           C+   +  S +K H + H G        C +     +   KH+++ H
Sbjct: 39  CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 43.6 bits (104), Expect = 7e-07
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           +  +K H+R HTG KP+ C  C+Y AA  S+L KH+
Sbjct: 21  KDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 42.4 bits (101), Expect = 2e-06
 Identities = 18/48 (37%), Positives = 29/48 (60%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           + C  C+Y +A  S + +H+R H+ E+PF C +C Y +   S LT H+
Sbjct: 37  YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 42.9 bits (102), Expect = 2e-06
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 81  SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
             +K H R+HTG KPF C  C+ K ++  +L  H 
Sbjct: 52  DQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCE-YKA-AKKSNLTKHM 115
           F C  C+   ++  H+K H R HTGEKPFSC      K  A+   L +H 
Sbjct: 67  FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH 116

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 79  KRSHIKEHIRQHTGEKPFSCLLCEY-KA-AKKSNLTKHM 115
           K SH++ H R+HTGEKP+ C   +  +  ++   L +H 
Sbjct: 20  KLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 68  FTCFACEYHSAKR-----SHIKEHIRQHTGEKPFSCLLCE-YKA-AKKSNLTKHM 115
           F C         R       +  H+R+HTGEKP  C      K+ ++  NL  H+
Sbjct: 35  FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL 89

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 42.2 bits (100), Expect = 5e-06
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 81  SHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSKKH 119
            ++K H+R HTGEKP+ C    C    +  S+  KH ++ H
Sbjct: 83  ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 10/56 (17%), Positives = 13/56 (23%), Gaps = 8/56 (14%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQ---HTGEKPFSCLLCEYKAAKK-----SNLTKHM 115
                C      +  +  HI     H   K F C         +       L  HM
Sbjct: 4   CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A Length = 37

 Score = 40.0 bits (94), Expect = 4e-06
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
             R  TG KPF C  C+   ++  +L  H  K+H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRH 34

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.9 bits (97), Expect = 6e-06
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
             H+  H   H+GEKP+SC +C  +  +K  ++ H+
Sbjct: 20  VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 36.3 bits (85), Expect = 3e-04
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGE--KPFSCLLCEYKAAKKSNLTKHMSKKH 119
           ++C  C     ++  +  H+R H G   KP+ C  C    ++  +L  H+ + H
Sbjct: 36  YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 41.9 bits (99), Expect = 7e-06
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCE-YKA-AKKSNLTKHM 115
           +  +  HIR HTGEKPF C      K  A+  NL  H 
Sbjct: 75  KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 78  AKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHM 115
           A+  ++K H R HTGEKPF C    C+ + A  S+  KHM
Sbjct: 103 ARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 7/57 (12%), Positives = 13/57 (22%), Gaps = 9/57 (15%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA---------AKKSNLTKHM 115
               +C+   +    +  H+       P       Y             K  L  H+
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCE-YKA-AKKSNLTKHM 115
             C  C     + S +K H   HTGEKPF C      K  +   NL  H+
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 84

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 80  RSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHM 115
             +++ H+R HTG++P+ C    C  K A+ +NL  H+
Sbjct: 77  DFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 39.4 bits (93), Expect = 2e-05
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 81  SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
            H   H      +KP+ C  C+     K NL  H 
Sbjct: 3   HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK 37

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 38.6 bits (91), Expect = 3e-05
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           + ++  H   HTGEKP+ C +C  +  + +NL  H 
Sbjct: 30  KGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 78  AKRSHIKEHIR-QHTGEKPFSC--LLCEYKAAKKSNLTKHM 115
           + R ++  H + QH  +K FSC    C      K +L +HM
Sbjct: 20  SNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 71  FACEYHS-----AKRSHIKEHIRQHTGEKPFSCLLC 101
           F+C   +       + H+KEH++ H+  + + C   
Sbjct: 39  FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 38.4 bits (90), Expect = 2e-05
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 86  HIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSK 117
                TGEKPF+C    C ++ ++   L++H   
Sbjct: 3   SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 38.4 bits (89), Expect = 2e-05
 Identities = 10/34 (29%), Positives = 13/34 (38%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC 101
             C  C        H+  H   H+GEKP+S    
Sbjct: 13  VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 11/38 (28%), Positives = 13/38 (34%)

Query: 78  AKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           +  S  K +    TG   F C  C         LT HM
Sbjct: 2   SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM 39

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 8/51 (15%), Positives = 18/51 (35%)

Query: 70  CFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHP 120
                +   ++  + E   +   +K   C+ C +      +L+ HM K   
Sbjct: 55  NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 39.2 bits (91), Expect = 4e-05
 Identities = 9/29 (31%), Positives = 11/29 (37%)

Query: 70 CFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
          C         +  +  HIR HTGEK    
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 38.6 bits (91), Expect = 4e-05
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 78  AKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                      Q    + + C  C    +  S+L+KH
Sbjct: 1   GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 36.3 bits (85), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
            S + +H R HTGEKP+ C  C  KA  ++S+L  H
Sbjct: 31  SSDLSKHRRTHTGEKPYKCDECG-KAFIQRSHLIGH 65

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 39.0 bits (92), Expect = 4e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           +S    H+  H G +P+ C +C  K   K +L  HM
Sbjct: 22  KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 57

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 35.5 bits (83), Expect = 8e-04
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
           + H+  H++ HTG KP+ C +C  +   + +  +H+
Sbjct: 50  KHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 78  AKRSHIKEHIRQHTGEKPFSC--LLCEYKA-AKKSNLTKHM 115
            K + +K H   HT + P+ C    C+ K  +  S L +H 
Sbjct: 117 KKHNQLKVHQFSHTQQLPYECPHEGCD-KRFSLPSRLKRHE 156

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 80  RSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHM 115
             H+  H   HTGEK F+C    C+ +   K+N+ KH 
Sbjct: 57  LHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 78  AKRSHIKEHIRQHTGEKPFSC--LLCEYKA-AKKSNLTKHM 115
            K   ++ H+ +HTGEKPF C    CE K      +LT+H 
Sbjct: 25  NKNWKLQAHLCKHTGEKPFPCKEEGCE-KGFTSLHHLTRHS 64

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 37.8 bits (89), Expect = 7e-05
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKHM 115
           +S +K+H   HTGEKP  C +C  KA ++ SNL  H 
Sbjct: 42  KSDMKKHTFIHTGEKPHKCQVCG-KAFSQSSNLITHS 77

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 37.0 bits (87), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKHM 115
            S +  H+  H+  +P+ C  C  K   +KS++ KH 
Sbjct: 14  SSTLSTHLLIHSDTRPYPCQYCG-KRFHQKSDMKKHT 49

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
           + C  C    ++ +H++ H R HTGEKP+ C  C  K+ +++ NL  H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG-KSFSREDNLHTH 152

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
             H+ EH R HTGEKP+ C  C  K+ + K +LT+H
Sbjct: 34  SDHLAEHQRTHTGEKPYKCPECG-KSFSDKKDLTRH 68

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           R++++ H R HTGEKP++C  C    ++ ++L  H
Sbjct: 90  RANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 79  KRSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
           +  ++  H R HTGEKP+ C  C  K+ +++  L  H
Sbjct: 145 REDNLHTHQRTHTGEKPYKCPECG-KSFSRRDALNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
            S          GEKP++C  C  K+ ++  +L +H
Sbjct: 6   SSSSVAQAALEPGEKPYACPECG-KSFSRSDHLAEH 40

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
           +  +  H R HTGEKP+ C  C  K+ ++++NL  H
Sbjct: 62  KKDLTRHQRTHTGEKPYKCPECG-KSFSQRANLRAH 96

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 36.7 bits (86), Expect = 9e-05
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
                 GEKP+ C +C  +      L  H+
Sbjct: 2   SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 34.8 bits (81), Expect = 4e-04
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEKPFS 97
          + C  C         +K H+R HTG  P S
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
            S + +H R HTGEKP+ CL C    ++ S L  H
Sbjct: 27  SSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 37.1 bits (87), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 82  HIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
                 R HTGEKP++C  C+    +K  L  H 
Sbjct: 2   SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHF 35

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 68  FTCFACEYHSAKRSHIKEHIR-QHTG---EKPFSCLLCEYKAAKKSNLTKHMSKKHPSS 122
           + C  C + +   +    H+  +H        + C+ C +   +   L++H  K HP  
Sbjct: 19  YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE 77

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 9/50 (18%), Positives = 20/50 (40%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV 129
             H   + +    E  + C  C ++    +  T H+  +HP+   +  +V
Sbjct: 3   HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYV 52

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 2e-04
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKPF C  C+     KSNL  H
Sbjct: 3   SGSSGTGEKPFECSECQKAFNTKSNLIVH 31

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 37.0 bits (87), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 68  FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKH 114
           F C  C  H  K  ++  H R HT E+P++C +C  KA  ++ +L  H
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICH-KAFRRQDHLRDH 64

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 80  RSHIKEHIRQHTGEKPFSCLLCEYKA-AKKSNLTKHM 115
           + H+++H   H+ EKPF C  C  K   +   L  H 
Sbjct: 58  QDHLRDHRYIHSKEKPFKCQECG-KGFCQSRTLAVHK 93

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 36.6 bits (86), Expect = 3e-04
 Identities = 9/34 (26%), Positives = 10/34 (29%)

Query: 81  SHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
           S           +K F C  C     K  NL  H
Sbjct: 3   SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH 36

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKPF C +C      +S L +H
Sbjct: 3   SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.5 bits (83), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C  C+     KSNL  H
Sbjct: 3   SGSSGTGEKPYECNECQKAFNTKSNLMVH 31

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
                 GEKP+ C  C  +  + ++L  H+
Sbjct: 2   SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C  C     +KS L  H
Sbjct: 3   SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 35.6 bits (83), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TG+KPF C  C      K NL  H
Sbjct: 3   SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.5 bits (83), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGE+P+ C +C      +SNL KH
Sbjct: 3   SGSSGTGERPYICTVCGKAFTDRSNLIKH 31

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 35.2 bits (82), Expect = 3e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TG KP+ C  C    + KS L  H
Sbjct: 3   SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGE PF C  C      K+NL  H
Sbjct: 3   SGSSGTGENPFICSECGKVFTHKTNLIIH 31

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.3 bits (82), Expect = 3e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
                TGEKPF C  C    +   +L KH+
Sbjct: 3   SGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C  C    A+K+NLT+H
Sbjct: 3   SGSSGTGEKPYRCGECGKAFAQKANLTQH 31

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C  C      +SNL  H
Sbjct: 3   SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 34.9 bits (81), Expect = 4e-04
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
                 GEKP+ C  C    ++K +L  H+
Sbjct: 2   SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKPF C+ C    +++S L  H
Sbjct: 3   SGSSGTGEKPFKCVECGKGFSRRSALNVH 31

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C  C      KS L  H
Sbjct: 3   SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKPF C  C    +  S L  H
Sbjct: 3   SGSSGTGEKPFECAECGKSFSISSQLATH 31

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.8 bits (81), Expect = 5e-04
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C  C      K NL  H
Sbjct: 3   SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 6e-04
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C  C     KKS L  H
Sbjct: 3   SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 6e-04
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                +GEKP+ C  C    ++KS L+ H
Sbjct: 3   SGSSGSGEKPYGCNECGKTFSQKSILSAH 31

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 6e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C  C     +KS+L +H
Sbjct: 3   SGSSGTGEKPYICNECGKSFIQKSHLNRH 31

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGE P+ C  C    ++K  L  H
Sbjct: 3   SGSSGTGENPYECHECGKAFSRKYQLISH 31

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C  C      +SNL KH
Sbjct: 3   SGSSGTGEKPYICAECGKAFTIRSNLIKH 31

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 85  EHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                 TGE+ + C  C    A+KS L  H
Sbjct: 2   SSGSSGTGERHYECSECGKAFARKSTLIMH 31

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C +C     KKS L  H
Sbjct: 3   SGSSGTGEKPYECSICGKSFTKKSQLHVH 31

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 80 RSHIKEHIRQHTGEKPFSC 98
           SH+ EH+++H  EK    
Sbjct: 25 HSHLIEHLKRHFREKSSGP 43

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKPF C+ C    +    L +H
Sbjct: 3   SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 34.1 bits (79), Expect = 8e-04
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 85  EHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                 T  K ++C  C     +  +LT+H
Sbjct: 2   SSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.1 bits (79), Expect = 8e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 85  EHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                 +GEKPF C  C  +  + S+L  H
Sbjct: 2   SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TG K F C  C     +KS L+ H
Sbjct: 3   SGSSGTGGKHFECTECGKAFTRKSTLSMH 31

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                +GEKPF C  C  +  + S L  H
Sbjct: 3   SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 34.1 bits (79), Expect = 8e-04
 Identities = 9/29 (31%), Positives = 10/29 (34%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                +GEKPF C  C       S    H
Sbjct: 3   SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 8e-04
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                + EKP+ C  C     ++ NL  H
Sbjct: 3   SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.1 bits (79), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                 GEKP+ C  C    + KS L  H
Sbjct: 3   SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 8e-04
 Identities = 12/29 (41%), Positives = 13/29 (44%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKP+ C  C       SNLT H
Sbjct: 3   SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 9e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEKPF C  C     ++ +LT+H
Sbjct: 3   SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 9e-04
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 85  EHIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                 TGE+ + C  C     +KS L+ H
Sbjct: 2   SSGSSGTGERHYECSECGKAFIQKSTLSMH 31

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 9e-04
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                +GEKP+ C+ C     ++ +L  H
Sbjct: 3   SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.0 bits (79), Expect = 9e-04
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKH 114
                TGEK ++C  C    ++   L KH
Sbjct: 3   SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.92
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.89
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.89
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.86
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.86
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.85
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.83
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.83
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.83
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.83
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.83
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.82
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.81
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.8
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.8
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.8
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.79
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.78
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.77
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.75
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.74
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.74
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.73
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.73
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.71
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.71
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.7
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.69
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.69
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.67
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.65
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.64
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.64
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.64
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.63
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.62
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.62
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.62
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.62
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.62
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.61
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.61
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.61
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.6
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.6
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.6
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.58
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.57
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.57
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.56
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.55
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.55
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.55
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.54
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.54
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.53
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.53
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.52
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.51
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.51
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.51
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.5
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.5
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.49
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.46
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.45
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.45
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.44
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.44
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.44
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.42
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.41
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.4
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.4
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.37
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.37
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.35
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.33
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.32
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.32
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.32
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.32
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.31
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.31
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.31
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.31
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.31
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.31
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.31
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.31
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.3
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.3
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.3
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.3
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.29
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.29
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.29
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.28
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.28
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.28
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.28
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.27
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.27
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.27
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.27
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.27
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.27
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.27
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.26
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.26
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.26
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.25
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.25
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.25
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.24
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.24
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.24
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.24
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.23
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.22
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.22
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.22
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.22
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.21
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.2
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.2
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.19
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.18
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.17
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.17
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.15
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.15
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.14
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.14
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.12
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.12
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.12
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.12
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.11
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.11
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.11
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.11
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.1
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.1
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.1
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.09
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.09
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.09
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.08
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.08
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.08
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.07
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.06
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.06
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.04
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.04
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.03
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.03
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.02
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.93
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.87
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.85
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.85
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.85
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.83
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.82
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.77
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.75
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.73
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.72
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.72
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.72
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.72
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.7
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.69
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.67
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.66
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.65
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.64
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.63
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.62
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.58
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.53
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.52
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.47
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.47
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.47
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.43
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.42
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.4
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.39
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.39
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.38
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.37
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.36
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.36
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.35
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.33
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.33
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.31
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.31
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.3
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.29
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.29
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.28
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.28
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.59
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.25
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.57
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.57
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.24
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.24
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.23
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.54
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.2
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.2
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.2
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.19
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.19
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.18
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.16
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.13
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.28
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.28
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.91
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.86
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.64
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.55
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.53
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.4
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.57
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.11
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.98
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.82
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	94.09
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.68
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	91.85
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	89.43
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	88.67
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	87.89
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	86.77
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	85.51
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	84.51
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	83.1
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	82.35
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	80.78

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.92  E-value=3.2e-26  Score=139.20  Aligned_cols=97  Identities=19%  Similarity=0.201  Sum_probs=89.3

Q ss_pred             ehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          21 VSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        21 ~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      .|+..+|.|+++|.|..||+.|.....|..|+       ++|++++||.|.+|++.|.....|..|+++|++++||.|.+
T Consensus        11 ~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~-------~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   83 (133)
T 2lt7_A           11 DHYELIVDGRVYYICIVCKRSYVCLTSLRRHF-------NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA   83 (133)
T ss_dssp             SEEEEEETTEEEEEETTTCCEESCHHHHHHHH-------HHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESS
T ss_pred             hhceeecCCCcCeECCCCCCCcCCHHHHHHHH-------HHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCC
Confidence            34457899999999999999999999999999       99999999999999999999999999999999999999999


Q ss_pred             ChhhhcCcchHHHhhhhcCCCCCCCCc
Q psy4407         101 CEYKAAKKSNLTKHMSKKHPSSYEDPF  127 (130)
Q Consensus       101 C~~~f~~~~~l~~h~~~~h~g~~e~~~  127 (130)
                      |++.|.....|..|+ ++|.+  ++|+
T Consensus        84 C~k~F~~~~~L~~H~-~~hh~--~~p~  107 (133)
T 2lt7_A           84 CGKSFINYQFMSSHI-KSVHS--QDPS  107 (133)
T ss_dssp             SCCEESSHHHHHHHH-HHHTC--CCTT
T ss_pred             CCCCcCCHHHHHHHh-HHhcC--CCCC
Confidence            999999999999999 66655  5553

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.89  E-value=2.3e-24  Score=137.86  Aligned_cols=111  Identities=23%  Similarity=0.464  Sum_probs=59.3

Q ss_pred             ccccceehhhhhcccCcceecccccccccCccccccc----------cCCCCCCc-----------ccCCCCceeeCCCC
Q psy4407          15 YSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIAD----------HCKFCSYK-----------LRPDKTYIFTCFAC   73 (130)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h----------~c~~C~~~-----------~~h~~~~~~~C~~C   73 (130)
                      ....|..| ++.|.++++|.|..|++.|.....|..|          .|+.|+..           ..|.++++|.|..|
T Consensus        33 ~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C  111 (190)
T 2i13_A           33 RSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC  111 (190)
T ss_dssp             SSHHHHHG-GGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTT
T ss_pred             CHHHHHHH-HHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCC
Confidence            33445545 4566666666666666666666666555          35555554           33344455555555


Q ss_pred             CCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          74 EYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        74 ~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      ++.|.+...|..|++.|+++++|.|..|++.|.....|..|+ ++|.+  ++||.|
T Consensus       112 ~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~--~~~~~C  164 (190)
T 2i13_A          112 GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ-RTHTG--EKPYKC  164 (190)
T ss_dssp             CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH-HHHHC--CCCEEC
T ss_pred             CCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHH-HhcCC--CCCeEC
Confidence            555555555555555555555555555555555555555555 45555  555555

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.89  E-value=2.9e-24  Score=137.36  Aligned_cols=111  Identities=20%  Similarity=0.385  Sum_probs=92.5

Q ss_pred             eeccccceehhhhhcccCcceecccccccccCccccccc----------cCCCCCCc-----------ccCCCCceeeCC
Q psy4407          13 LFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIAD----------HCKFCSYK-----------LRPDKTYIFTCF   71 (130)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h----------~c~~C~~~-----------~~h~~~~~~~C~   71 (130)
                      |.....|..| ++.|.++++|.|..|++.|.....|..|          .|+.|+..           ..|.++++|.|.
T Consensus        59 f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  137 (190)
T 2i13_A           59 FSDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP  137 (190)
T ss_dssp             ESSHHHHHHH-HHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECT
T ss_pred             hCCHHHHHHH-HHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECC
Confidence            3445566666 5788888888888888888888888777          58888877           667789999999


Q ss_pred             CCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCc
Q psy4407          72 ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF  127 (130)
Q Consensus        72 ~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~  127 (130)
                      .|++.|.....|..|+++|+++++|.|..|++.|.....|..|+ ++|+|  ++||
T Consensus       138 ~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~--~k~~  190 (190)
T 2i13_A          138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ-RTHTG--KKTS  190 (190)
T ss_dssp             TTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH-TTC--------
T ss_pred             CCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHH-HhcCC--CCCC
Confidence            99999999999999999999999999999999999999999999 89999  9997

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=4e-23  Score=123.71  Aligned_cols=112  Identities=21%  Similarity=0.394  Sum_probs=94.0

Q ss_pred             Ccceeee------eeeccccceehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCC--CCCc
Q psy4407           5 PRSYYVL------FLFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFA--CEYH   76 (130)
Q Consensus         5 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~--C~~~   76 (130)
                      +++|.|.      .|.....|..| ++.| ++++|.|..|++.|.....|..|.       ..|.++++|.|..  |++.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H-~~~h-~~~~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~~~C~~~   73 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKH-LHTH-GPRVHVCAECGKAFVESSKLKRHQ-------LVHTGEKPFQCTFEGCGKR   73 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHH-HGGG-SCCCEECTTTCCEESSHHHHHHHG-------GGTSCCCCEECCSTTCCCE
T ss_pred             CCcccCCCCCCcCccCCHHHHHHH-HHHc-CCCCeECCCCCchhCCHHHHHHHH-------HHcCCCCCeeCCCCCCcCc
Confidence            4566665      34566677877 5788 889999999999999999999998       8999999999986  9999


Q ss_pred             ccCchhHHHHHHhhcCCCCeecc--cChhhhcCcchHHHhhhhcCCCCCCCCcc
Q psy4407          77 SAKRSHIKEHIRQHTGEKPFSCL--LCEYKAAKKSNLTKHMSKKHPSSYEDPFF  128 (130)
Q Consensus        77 f~~~~~l~~h~~~h~~~k~~~C~--~C~~~f~~~~~l~~h~~~~h~g~~e~~~~  128 (130)
                      |.....|..|++.|+++++|.|.  .|++.|.....|..|+ ++|++  +++++
T Consensus        74 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~-~~H~~--~k~~q  124 (124)
T 1ubd_C           74 FSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI-LTHAK--AKNNQ  124 (124)
T ss_dssp             ESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHH-HHHC--------
T ss_pred             cCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHH-HHHcc--cccCC
Confidence            99999999999999999999995  5999999999999999 88999  99874

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=9.9e-23  Score=121.80  Aligned_cols=111  Identities=22%  Similarity=0.374  Sum_probs=97.1

Q ss_pred             Ccceeeee----eeccccceehhhhhcccCcceecccccccccCccccccccCCCCCCcc---cCCCCceeeCCCCCCcc
Q psy4407           5 PRSYYVLF----LFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKL---RPDKTYIFTCFACEYHS   77 (130)
Q Consensus         5 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~---~h~~~~~~~C~~C~~~f   77 (130)
                      ..+|.|..    |.....|..| ++.|.++++|.|..|++.|.+...|..|.       .   .+.++++|.|.+|++.|
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-------~~~~~~~~~~~~~C~~C~~~f   76 (124)
T 2dlq_A            5 SSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHE-------ARNCMNRSEQVFTCSVCQETF   76 (124)
T ss_dssp             CSSCCCTTTCCCCSSHHHHHHH-HHHHSSCCSCBCTTTCCBCSSHHHHHHHH-------HHCCCCSCCCCEECSSSCCEE
T ss_pred             CCCCCCCCCCCcCCCHHHHHHH-HHhCCCCCCeECCCCCchhcCHHHHHHHH-------hhhhcCCCCCCeECCCCCCcc
Confidence            34555543    4456667777 68999999999999999999999999995       4   36788999999999999


Q ss_pred             cCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          78 AKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        78 ~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      .....|..|++.|+++++|.|..|++.|.....|..|++.+|.+  +.
T Consensus        77 ~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~--~~  122 (124)
T 2dlq_A           77 RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG--PS  122 (124)
T ss_dssp             SSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC--SS
T ss_pred             CCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC--CC
Confidence            99999999999999999999999999999999999999778998  64

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=5.1e-23  Score=127.67  Aligned_cols=107  Identities=24%  Similarity=0.314  Sum_probs=97.0

Q ss_pred             eeccccceehhhhh-cccCcc--------eecccccccccCccccccccCCCCCCcccCCCCceeeCCC--CCCcccCch
Q psy4407          13 LFYSSGLKVSEVDF-RFETEM--------LTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFA--CEYHSAKRS   81 (130)
Q Consensus        13 ~~~~~~~~~~~~~~-~~~~~~--------~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~--C~~~f~~~~   81 (130)
                      |.....|..|. +. |.++.+        |.|..|++.|.....|..|.       ..|.++++|.|..  |++.|....
T Consensus        35 f~~~~~L~~H~-~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~~~C~~~f~~~~  106 (155)
T 2rpc_A           35 FSTMHELVTHV-TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-------RVHTGEKPFPCPFPGCGKIFARSE  106 (155)
T ss_dssp             BSSHHHHHHHH-HTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHT-------HHHHCCCSEECSCTTTCCEESCHH
T ss_pred             cCCHHHHHHHH-HhhcCCCcccCCccccccCCCCcccccCCHHHHHHHH-------HhcCCCCcccCCcCCCCCccCCHH
Confidence            44566677774 54 777765        88999999999999999998       8999999999998  999999999


Q ss_pred             hHHHHHHhhcCCCCeeccc--ChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          82 HIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        82 ~l~~h~~~h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      .|..|+++|+++++|.|..  |++.|.....|..|+ ++|+|  ++||+|+
T Consensus       107 ~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~-~~H~~--~k~~~c~  154 (155)
T 2rpc_A          107 NLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTS--DKSGPSS  154 (155)
T ss_dssp             HHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSS-TTTTS--CCCSCSC
T ss_pred             HHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHH-HHhcC--CCCCCCC
Confidence            9999999999999999996  999999999999999 89999  9999996

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=6.8e-22  Score=113.39  Aligned_cols=93  Identities=23%  Similarity=0.504  Sum_probs=87.5

Q ss_pred             hcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhh
Q psy4407          26 FRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA  105 (130)
Q Consensus        26 ~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f  105 (130)
                      ++.++++|.|..|++.|.....|..|.       ..|.++++|.|..|++.|.....|..|++.|+++++|.|..|++.|
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   74 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHM-------RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYAS   74 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHG-------GGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEE
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHH-------HhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCcc
Confidence            356889999999999999999999998       8999999999999999999999999999999999999999999999


Q ss_pred             cCcchHHHhhhhcCCCCCCCCcc
Q psy4407         106 AKKSNLTKHMSKKHPSSYEDPFF  128 (130)
Q Consensus       106 ~~~~~l~~h~~~~h~g~~e~~~~  128 (130)
                      .....|..|+ ++|.+  +++..
T Consensus        75 ~~~~~l~~H~-~~h~~--~~~p~   94 (96)
T 2dmd_A           75 RNSSQLTVHL-RSHTG--DSGPS   94 (96)
T ss_dssp             SSHHHHHHHH-TTCCS--CCCCC
T ss_pred             CCHHHHHHHH-HHhcC--CCCCC
Confidence            9999999999 89999  87643

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=8.7e-23  Score=119.52  Aligned_cols=95  Identities=17%  Similarity=0.170  Sum_probs=88.4

Q ss_pred             hhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChh
Q psy4407          24 VDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEY  103 (130)
Q Consensus        24 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~  103 (130)
                      ++.|+++++|.|..|++.|.....|..|+       ..|  .++|.|.+|++.|.....|..|++ |+++++|.|..|++
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-------~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~   77 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHE-------RLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMR   77 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHH-------HHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTE
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHH-------HHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccc
Confidence            46788999999999999999999999997       777  578999999999999999999996 99999999999999


Q ss_pred             hhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407         104 KAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus       104 ~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      .|.....|..|++.+|++  ++||.++
T Consensus        78 ~f~~~~~L~~H~~~~H~~--~~~~~~~  102 (107)
T 1wjp_A           78 TFKSSFSIWRHQVEVHNQ--NNMAPTS  102 (107)
T ss_dssp             ECSSHHHHHHHHHHTSCC--CCCCCCC
T ss_pred             hhCCHHHHHHHHHHHcCC--CCCCCCC
Confidence            999999999999669999  9999874

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.85  E-value=3.6e-22  Score=116.56  Aligned_cols=94  Identities=19%  Similarity=0.377  Sum_probs=89.2

Q ss_pred             hcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhh
Q psy4407          26 FRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA  105 (130)
Q Consensus        26 ~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f  105 (130)
                      ...++++|.|..|++.|.....|..|.       ..|.++++|.|.+|++.|.....|..|++.|+++++|.|..|++.|
T Consensus        11 ~~~~~~~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   83 (106)
T 2ee8_A           11 PSKTKKEFICKFCGRHFTKSYNLLIHE-------RTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF   83 (106)
T ss_dssp             CCCCCCCCBCSSSCCBCSSHHHHHHHH-------HHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCC
T ss_pred             CcCCCcCeECCCCCCccCCHHHHHHHH-------HHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcc
Confidence            345788999999999999999999998       8999999999999999999999999999999999999999999999


Q ss_pred             cCcchHHHhhhhcCCCCCCCCccC
Q psy4407         106 AKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus       106 ~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      .....|..|+ ++|.+  ++||..
T Consensus        84 ~~~~~L~~H~-~~H~~--~~~~~~  104 (106)
T 2ee8_A           84 CQSRTLAVHK-TLHMQ--TSSPTA  104 (106)
T ss_dssp             SSHHHHHHHH-HHTTS--CCCCCC
T ss_pred             cCHHHHHHHH-HHhCC--CCCCcC
Confidence            9999999999 99999  999975

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.84  E-value=6.7e-22  Score=126.37  Aligned_cols=116  Identities=18%  Similarity=0.262  Sum_probs=83.5

Q ss_pred             CCCcceeee------eeeccccceehhhhhcccCcceec--ccccccccCccccccccCCCCCCcccCCCCceeeCC--C
Q psy4407           3 SVPRSYYVL------FLFYSSGLKVSEVDFRFETEMLTC--KYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCF--A   72 (130)
Q Consensus         3 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~C--~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~--~   72 (130)
                      ...++|.|.      .|.....|..| ++.|.++++|.|  ..|++.|.....|..|.       .+|.++++|.|.  .
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H-~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~~~   79 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-------LTHTGEKNFTCDSDG   79 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHH-HHHHHCCCSSCCSSTTCCCCCSSHHHHHHHH-------TTTTTCCCEECCSSS
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHH-HHhcCCCCCccCCCCCCChhhCCHHHHHHHH-------HHccCCCceeCCCCC
Confidence            345666663      24456667777 689999999999  88999999999999996       666666777776  6


Q ss_pred             CCCcccCchhHHHHH-Hhh-cCCCCeec--ccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          73 CEYHSAKRSHIKEHI-RQH-TGEKPFSC--LLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        73 C~~~f~~~~~l~~h~-~~h-~~~k~~~C--~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      |++.|.+...|..|+ +.| .++++|.|  ..|++.|.....|..|+ ++|++  ++||.|
T Consensus        80 C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C  137 (190)
T 1tf6_A           80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ-FSHTQ--QLPYEC  137 (190)
T ss_dssp             CCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHH-GGGSS--SCSSBC
T ss_pred             CCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHH-HHhCC--CCCccC
Confidence            777777777777776 455 35566777  66777777777777777 66777  777766

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=4e-22  Score=118.44  Aligned_cols=106  Identities=27%  Similarity=0.519  Sum_probs=89.1

Q ss_pred             Ccceeeee------eeccccceehhhhhcccCcceecc--cccccccCccccccccCCCCCCcccCCCCceeeCCCCCCc
Q psy4407           5 PRSYYVLF------LFYSSGLKVSEVDFRFETEMLTCK--YCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYH   76 (130)
Q Consensus         5 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~   76 (130)
                      .+||.|..      |.....|..| ++.|.++++|.|.  .|++.|.....|..|.       ..|.++++|.|.+|++.
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~   75 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-------RRHTGVKPFQCKTCQRK   75 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHHHH-HHHHHTTCCEECCSTTCCCEESSHHHHHHHH-------HHHHCCCCEECTTTCCE
T ss_pred             CeeeeCCCCCCcchhCCHHHHHHH-HHhhCCCCCccCCCCCCcCccCCHHHHHHHH-------HHcCCCCCccCCccCch
Confidence            45566553      4455667777 5788899999998  6999999999999998       88888899999999999


Q ss_pred             ccCchhHHHHHHhhcCCCCeec--ccChhhhcCcchHHHhhhhcC
Q psy4407          77 SAKRSHIKEHIRQHTGEKPFSC--LLCEYKAAKKSNLTKHMSKKH  119 (130)
Q Consensus        77 f~~~~~l~~h~~~h~~~k~~~C--~~C~~~f~~~~~l~~h~~~~h  119 (130)
                      |.....|..|++.|+++++|.|  ..|++.|.....|..|+ ++|
T Consensus        76 f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~-~~H  119 (119)
T 2jp9_A           76 FSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHH-NMH  119 (119)
T ss_dssp             ESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHH-HTC
T ss_pred             hCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHH-hcC
Confidence            9999999999999999999999  78999999999999998 665

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.83  E-value=8.5e-22  Score=116.99  Aligned_cols=92  Identities=27%  Similarity=0.553  Sum_probs=88.1

Q ss_pred             ccCcceeccc--ccccccCccccccccCCCCCCcccCCCCceeeCC--CCCCcccCchhHHHHHHhhcCCCCeecccChh
Q psy4407          28 FETEMLTCKY--CYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCF--ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEY  103 (130)
Q Consensus        28 ~~~~~~~C~~--C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~  103 (130)
                      +++++|.|..  |++.|.....|..|.       ..|.++++|.|.  .|++.|.....|..|++.|+++++|.|..|++
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   74 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHS-------RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQR   74 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHH-------HHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHH-------HhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCc
Confidence            5788999997  999999999999998       889999999999  79999999999999999999999999999999


Q ss_pred             hhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407         104 KAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus       104 ~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      .|.....|..|+ ++|.+  ++||.|
T Consensus        75 ~f~~~~~l~~H~-~~h~~--~~~~~C   97 (119)
T 2jp9_A           75 KFSRSDHLKTHT-RTHTG--EKPFSC   97 (119)
T ss_dssp             EESCHHHHHHHH-HHHHT--CCCEEC
T ss_pred             hhCCHHHHHHHH-HHhcC--CCCeeC
Confidence            999999999999 89999  999998

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.83  E-value=1.2e-21  Score=111.00  Aligned_cols=88  Identities=26%  Similarity=0.488  Sum_probs=80.2

Q ss_pred             cCcceecc--cccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhc
Q psy4407          29 ETEMLTCK--YCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAA  106 (130)
Q Consensus        29 ~~~~~~C~--~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~  106 (130)
                      ++++|.|.  .|++.|.....|..|.       ..|.++++|.|..|++.|.....|..|++.|+++++|.|..|++.|.
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHI-------RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHH-------HHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHH-------HHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            46899998  6999999999999998       88999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHhhhhcCCCCCCCC
Q psy4407         107 KKSNLTKHMSKKHPSSYEDP  126 (130)
Q Consensus       107 ~~~~l~~h~~~~h~g~~e~~  126 (130)
                      ....|..|+ ++|+|  +++
T Consensus        74 ~~~~l~~H~-~~H~~--~k~   90 (90)
T 1a1h_A           74 RSDERKRHT-KIHLR--QKD   90 (90)
T ss_dssp             SHHHHHHHH-GGGGC-----
T ss_pred             CHHHHHHHH-HHhcc--cCC
Confidence            999999999 89998  763

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=4.8e-21  Score=109.62  Aligned_cols=87  Identities=18%  Similarity=0.466  Sum_probs=83.1

Q ss_pred             ccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCC--CCeecccChhhh
Q psy4407          28 FETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE--KPFSCLLCEYKA  105 (130)
Q Consensus        28 ~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~--k~~~C~~C~~~f  105 (130)
                      +++++|.|..|++.|.....|..|.       ..|.++++|.|..|++.|.....|..|++.|+++  ++|.|..|++.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f   75 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHK-------LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF   75 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHH-------HHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred             CCCCCeECCCCCCccCChHHHHHHH-------HhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence            5789999999999999999999998       8999999999999999999999999999999987  899999999999


Q ss_pred             cCcchHHHhhhhcCCC
Q psy4407         106 AKKSNLTKHMSKKHPS  121 (130)
Q Consensus       106 ~~~~~l~~h~~~~h~g  121 (130)
                      .....|..|++.+|.+
T Consensus        76 ~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           76 SRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             SSHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHhcCC
Confidence            9999999999779988

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.4e-21  Score=121.03  Aligned_cols=108  Identities=21%  Similarity=0.419  Sum_probs=84.5

Q ss_pred             eeccccceehhhh---hcccCcceecccc-----cccccCccccccccCCCCCCcccCCCCceeeCCC--CCCcccCchh
Q psy4407          13 LFYSSGLKVSEVD---FRFETEMLTCKYC-----YEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFA--CEYHSAKRSH   82 (130)
Q Consensus        13 ~~~~~~~~~~~~~---~~~~~~~~~C~~C-----~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~--C~~~f~~~~~   82 (130)
                      |.....|..| ++   .|.++++|.|..|     ++.|.....|..|.       ..|.++++|.|..  |++.|.+...
T Consensus        13 f~~~~~L~~H-~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~-------~~h~~~~~~~C~~~~C~~~f~~~~~   84 (155)
T 2gli_A           13 FDSQEQLVHH-INSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-------RRHTGEKPHKCTFEGCRKSYSRLEN   84 (155)
T ss_dssp             CSCHHHHHHH-HHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHT-------HHHHCCCCCCCCSTTCCCCCSSHHH
T ss_pred             cCCHHHHHHH-HHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHH-------HhcCCCCCccCCCCCCCCcccCHHH
Confidence            4455566666 34   6778888887643     48888888888887       7788888888874  8888888888


Q ss_pred             HHHHHHhhcCCCCeeccc--ChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          83 IKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        83 l~~h~~~h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |..|++.|+++++|.|..  |++.|.....|..|++++|++  ++||.|+
T Consensus        85 l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~--~~~~~C~  132 (155)
T 2gli_A           85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN--EKPYVCK  132 (155)
T ss_dssp             HHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCS--CCCEECC
T ss_pred             HHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCC--CCCeeCC
Confidence            888888888888888887  888888888888887678888  8888874

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=1.6e-21  Score=116.44  Aligned_cols=93  Identities=19%  Similarity=0.371  Sum_probs=87.9

Q ss_pred             ccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHh---hcCCCCeecccChhh
Q psy4407          28 FETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQ---HTGEKPFSCLLCEYK  104 (130)
Q Consensus        28 ~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~---h~~~k~~~C~~C~~~  104 (130)
                      +++++|.|..|++.|.....|..|.       ..|.++++|.|..|++.|.+...|..|+..   +.++++|.|..|++.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~   75 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHN-------RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQET   75 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHH-------HHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCE
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHH-------HhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCc
Confidence            5788999999999999999999998       899999999999999999999999999985   578899999999999


Q ss_pred             hcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407         105 AAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus       105 f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |.....|..|+ ++|.+  ++||.|+
T Consensus        76 f~~~~~l~~H~-~~h~~--~~~~~C~   98 (124)
T 2dlq_A           76 FRRRMELRLHM-VSHTG--EMPYKCS   98 (124)
T ss_dssp             ESSHHHHHHHH-HHHSS--SCSEECS
T ss_pred             cCCHHHHHHHH-HHcCC--CCCccCC
Confidence            99999999999 89999  9999985

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=8.2e-22  Score=116.64  Aligned_cols=97  Identities=14%  Similarity=0.136  Sum_probs=86.3

Q ss_pred             cccceehhhhhcccCcceecccccccccCccccccccCCCCCCccc--CCCCceee-CCCCCCcc--cCchhHHHHHHhh
Q psy4407          16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLR--PDKTYIFT-CFACEYHS--AKRSHIKEHIRQH   90 (130)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~--h~~~~~~~-C~~C~~~f--~~~~~l~~h~~~h   90 (130)
                      ...|..| +++|+++++|.|..|++.|.....|..|+       ..  +.+++++. |.+|++.|  .....|..|+++|
T Consensus         4 ~~~l~~H-~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-------~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H   75 (115)
T 2dmi_A            4 GSSGKLY-GSIFTGASKFRCKDCSAAYDTLVELTVHM-------NETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE   75 (115)
T ss_dssp             CCCCCCC-CCCCCCCCSEEBSSSSCEESSHHHHHHHH-------HHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSC
T ss_pred             chhhhhh-eeeeCCCCCEECCccCchhcCHHHHHHHH-------HHhCccccCCCccCCCCCcccccccHHHHHHHhhcc
Confidence            4567777 58999999999999999999999999997       66  66666655 99999998  8999999999999


Q ss_pred             cCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          91 TGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        91 ~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +++++|.|.+|++.|.....|..|+ ++|..
T Consensus        76 ~~~~~~~C~~C~k~f~~~~~L~~H~-~~hh~  105 (115)
T 2dmi_A           76 DAQKVLKCMYCGHSFESLQDLSVHM-IKTKH  105 (115)
T ss_dssp             CCCSSCBCSSSCCBCSSHHHHHHHH-HHTTT
T ss_pred             CCCcceECCCCCCccCCHHHHHHHH-HHhCC
Confidence            9999999999999999999999999 55554

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.81  E-value=1.8e-20  Score=98.65  Aligned_cols=59  Identities=27%  Similarity=0.448  Sum_probs=55.8

Q ss_pred             CCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        64 ~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      +|+||.|.+||+.|.....|..|+++|++++||.|.+|++.|.....|..|+ ++|+|  |+
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~-~~Htg--ep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL-KVHQN--KP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHG-GGGSC--C-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHh-CccCC--CC
Confidence            4789999999999999999999999999999999999999999999999999 89999  75

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.80  E-value=7e-21  Score=106.03  Aligned_cols=82  Identities=29%  Similarity=0.534  Sum_probs=77.8

Q ss_pred             ceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchH
Q psy4407          32 MLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNL  111 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l  111 (130)
                      ||.|..|++.|.....|..|.       ..|.++++|.|..|++.|.....|..|++.|+++++|.|..|++.|.....|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHL-------LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHH-------HHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCCcccccCchhHHHHH-------HHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            689999999999999999998       8899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcCCC
Q psy4407         112 TKHMSKKHPS  121 (130)
Q Consensus       112 ~~h~~~~h~g  121 (130)
                      ..|+ ++|+|
T Consensus        74 ~~H~-~~H~g   82 (82)
T 2kmk_A           74 ITHS-RKHTG   82 (82)
T ss_dssp             HHHH-HHHC-
T ss_pred             HHHH-HhhCC
Confidence            9999 77765

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.80  E-value=1.9e-20  Score=111.97  Aligned_cols=91  Identities=24%  Similarity=0.534  Sum_probs=83.7

Q ss_pred             cCcceecc--cccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc--Chhh
Q psy4407          29 ETEMLTCK--YCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL--CEYK  104 (130)
Q Consensus        29 ~~~~~~C~--~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~--C~~~  104 (130)
                      ++++|.|+  .|++.|.+...|..|.       ..| ++++|.|..|++.|.+...|..|++.|+++++|.|..  |++.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~-------~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~   73 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHL-------HTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR   73 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHH-------GGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCE
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHH-------HHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCc
Confidence            46789999  8999999999999998       788 8899999999999999999999999999999999985  9999


Q ss_pred             hcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407         105 AAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus       105 f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |.....|..|+ ++|.+  ++||.|+
T Consensus        74 f~~~~~l~~H~-~~h~~--~~~~~C~   96 (124)
T 1ubd_C           74 FSLDFNLRTHV-RIHTG--DRPYVCP   96 (124)
T ss_dssp             ESCHHHHHHHH-HHHHC--CCCCCCC
T ss_pred             cCCHHHHHHHH-HHhCC--CCceECC
Confidence            99999999999 89999  9999993

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.7e-20  Score=116.15  Aligned_cols=100  Identities=21%  Similarity=0.331  Sum_probs=91.6

Q ss_pred             eeccccceehhhhhcccCcceeccc--ccccccCccccccccCCCCCCcccCCCCceeeCCC--CCCcccCchhHHHHH-
Q psy4407          13 LFYSSGLKVSEVDFRFETEMLTCKY--CYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFA--CEYHSAKRSHIKEHI-   87 (130)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~--C~~~f~~~~~l~~h~-   87 (130)
                      |.....|..| ++.|.++++|.|..  |++.|.....|..|.       ..|.++++|.|..  |++.|.+...|..|+ 
T Consensus        49 f~~~~~l~~H-~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~  120 (155)
T 2gli_A           49 FKAQYMLVVH-MRRHTGEKPHKCTFEGCRKSYSRLENLKTHL-------RSHTGEKPYMCEHEGCSKAFSNASDRAKHQN  120 (155)
T ss_dssp             CSSHHHHHHH-THHHHCCCCCCCCSTTCCCCCSSHHHHHHHH-------HHTTTCCCEECCSTTCCCEESSSSTTHHHHH
T ss_pred             hhhHHHHHHH-HHhcCCCCCccCCCCCCCCcccCHHHHHHHH-------HHcCCCCCeeCCCCCCCCccCCHHHHHHHHH
Confidence            5566677777 68999999999985  999999999999998       8999999999998  999999999999998 


Q ss_pred             HhhcCCCCeeccc--ChhhhcCcchHHHhhhhcCCC
Q psy4407          88 RQHTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        88 ~~h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +.|+++++|.|..  |++.|.....|..|+ ++|.|
T Consensus       121 ~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~-~~hhg  155 (155)
T 2gli_A          121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHV-KTVHG  155 (155)
T ss_dssp             HTTCSCCCEECCSTTTCCEESSHHHHHHHH-HHSCC
T ss_pred             HhcCCCCCeeCCCCCCccccCCHHHHHHHH-HhhcC
Confidence            7999999999998  999999999999999 66654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=2.7e-20  Score=109.22  Aligned_cols=83  Identities=17%  Similarity=0.363  Sum_probs=79.8

Q ss_pred             hcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhh
Q psy4407          26 FRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKA  105 (130)
Q Consensus        26 ~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f  105 (130)
                      .|+++++|.| .|++.|.....|..|.       ..|.++++|.|.+|++.|.....|..|++.|+++++|.|..|++.|
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   75 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHM-------SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF   75 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHH-------HHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEE
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHH-------HHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchh
Confidence            5789999999 9999999999999998       8999999999999999999999999999999999999999999999


Q ss_pred             cCcchHHHhhh
Q psy4407         106 AKKSNLTKHMS  116 (130)
Q Consensus       106 ~~~~~l~~h~~  116 (130)
                      .....|..|++
T Consensus        76 ~~~~~l~~H~~   86 (110)
T 2csh_A           76 MWRDSFHRHVT   86 (110)
T ss_dssp             SCHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            99999999994

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.78  E-value=2.9e-20  Score=112.89  Aligned_cols=95  Identities=14%  Similarity=0.311  Sum_probs=82.2

Q ss_pred             cceeeee----eeccccceehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCch
Q psy4407           6 RSYYVLF----LFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRS   81 (130)
Q Consensus         6 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~   81 (130)
                      +||.|..    |.....|..| +++|+++++|.|..|++.|.....|..|+       .+|++++||.|.+||+.|....
T Consensus        21 k~y~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-------~~H~~~k~~~C~~C~k~F~~~~   92 (133)
T 2lt7_A           21 VYYICIVCKRSYVCLTSLRRH-FNIHSWEKKYPCRYCEKVFPLAEYRTKHE-------IHHTGERRYQCLACGKSFINYQ   92 (133)
T ss_dssp             EEEEETTTCCEESCHHHHHHH-HHHHHCCSCEECSSSSCEESSHHHHHHHH-------HHHHTCCCEEESSSCCEESSHH
T ss_pred             cCeECCCCCCCcCCHHHHHHH-HHHcCCCCCeeCCccCeecccccchhhhc-------cccCCCccccCCCCCCCcCCHH
Confidence            3455543    4566778888 68999999999999999999999999998       9999999999999999999999


Q ss_pred             hHHHHHHhhcCC------CCeecccChhhhcCc
Q psy4407          82 HIKEHIRQHTGE------KPFSCLLCEYKAAKK  108 (130)
Q Consensus        82 ~l~~h~~~h~~~------k~~~C~~C~~~f~~~  108 (130)
                      .|..|+++|+++      ++|.|..|++.|...
T Consensus        93 ~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           93 FMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             HHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            999999998765      458999999887644

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.77  E-value=1.6e-19  Score=111.88  Aligned_cols=94  Identities=26%  Similarity=0.322  Sum_probs=85.8

Q ss_pred             cccCcceecccccccccCccccccccCCCCCCccc-CCCCce--------eeCCCCCCcccCchhHHHHHHhhcCCCCee
Q psy4407          27 RFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLR-PDKTYI--------FTCFACEYHSAKRSHIKEHIRQHTGEKPFS   97 (130)
Q Consensus        27 ~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~   97 (130)
                      ...+.+|.|..|++.|.+...|..|.       .. |.++.+        |.|..|++.|.....|..|++.|+++++|.
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~-------~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   92 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHV-------TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFP   92 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHH-------HTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEE
T ss_pred             chhhcccccccCCcccCCHHHHHHHH-------HhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCccc
Confidence            45678899999999999999999996       55 666544        789999999999999999999999999999


Q ss_pred             ccc--ChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          98 CLL--CEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        98 C~~--C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |..  |++.|.....|..|+ ++|.+  ++||.|+
T Consensus        93 C~~~~C~~~f~~~~~L~~H~-~~h~~--~~~~~C~  124 (155)
T 2rpc_A           93 CPFPGCGKIFARSENLKIHK-RTHTG--EKPFKCE  124 (155)
T ss_dssp             CSCTTTCCEESCHHHHHHHH-TTTCS--SCSBCCS
T ss_pred             CCcCCCCCccCCHHHHHHHH-HhhCC--CCCccCC
Confidence            998  999999999999999 89999  9999985

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.75  E-value=1.2e-18  Score=98.28  Aligned_cols=83  Identities=28%  Similarity=0.605  Sum_probs=77.8

Q ss_pred             cCcceeccc--ccccccCccccccccCCCCCCcccCCCCceeeCC--CCCCcccCchhHHHHHHhhcCCCCeecccChhh
Q psy4407          29 ETEMLTCKY--CYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCF--ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYK  104 (130)
Q Consensus        29 ~~~~~~C~~--C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~  104 (130)
                      ..++|.|..  |++.|.....|..|.       ..|.++++|.|.  .|++.|.....|..|++.|+++++|.|..|++.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHL-------RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHH-------TTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHH-------HhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            356899999  999999999999998       899999999997  699999999999999999999999999999999


Q ss_pred             hcCcchHHHhhhhcC
Q psy4407         105 AAKKSNLTKHMSKKH  119 (130)
Q Consensus       105 f~~~~~l~~h~~~~h  119 (130)
                      |.....|..|+ ++|
T Consensus        75 f~~~~~l~~H~-~~H   88 (89)
T 2wbs_A           75 FSRSDHLALHM-KRH   88 (89)
T ss_dssp             ESSHHHHHHHG-GGG
T ss_pred             cCCHHHHHHHH-Hhh
Confidence            99999999999 766

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.74  E-value=7.8e-19  Score=112.09  Aligned_cols=101  Identities=21%  Similarity=0.293  Sum_probs=86.4

Q ss_pred             eeccccceehhhhhcccCcceecc--cccccccCccccccccCCCCCCcccC-CCCceeeC--CCCCCcccCchhHHHHH
Q psy4407          13 LFYSSGLKVSEVDFRFETEMLTCK--YCYEFLPNDAEIIADHCKFCSYKLRP-DKTYIFTC--FACEYHSAKRSHIKEHI   87 (130)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~l~~h~c~~C~~~~~h-~~~~~~~C--~~C~~~f~~~~~l~~h~   87 (130)
                      |.....|..| +++|.++++|.|.  .|++.|.+...|..|.-      ..| .++++|.|  ..|++.|.+...|..|+
T Consensus        54 f~~~~~l~~H-~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~------~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~  126 (190)
T 1tf6_A           54 FTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN------RFHNIKICVYVCHFENCGKAFKKHNQLKVHQ  126 (190)
T ss_dssp             CSSHHHHHHH-HTTTTTCCCEECCSSSCCCEESCHHHHHHHHH------TTSSTTTSCCEECSSSSCEECSSHHHHHHHH
T ss_pred             hCCHHHHHHH-HHHccCCCceeCCCCCCCCccCCHHHHHHHHH------HhcCCCcceeeCCCCCCccccCCHHHHHHHH
Confidence            4566667777 6899999999999  89999999999999930      234 36778999  88999999999999999


Q ss_pred             HhhcCCCCeeccc--ChhhhcCcchHHHhhhhcCCC
Q psy4407          88 RQHTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        88 ~~h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ++|+++++|.|..  |++.|.....|..|+ ++|+|
T Consensus       127 ~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~-~~H~~  161 (190)
T 1tf6_A          127 FSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHAG  161 (190)
T ss_dssp             GGGSSSCSSBCCSSSCCCBCSSHHHHHHHH-TSSCS
T ss_pred             HHhCCCCCccCCCCCCCchhcCHHHHHHHH-HHhCC
Confidence            9999999999977  999999999999999 78887

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=2.8e-18  Score=94.60  Aligned_cols=67  Identities=27%  Similarity=0.483  Sum_probs=62.4

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      ..+.++++|.|.+|++.|.....|..|++.|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~--~~p~~C   77 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH-RVHTG--SGPSSG   77 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHG-GGSCC--CCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHH-HHhCC--CCCCCC
Confidence            44567889999999999999999999999999999999999999999999999999 89999  999998

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.73  E-value=1.4e-18  Score=100.07  Aligned_cols=86  Identities=26%  Similarity=0.602  Sum_probs=79.9

Q ss_pred             ccCcceeccc--ccccccCccccccccCCCCCCcccCCCCceeeCC--CCCCcccCchhHHHHHHhhcCCCCeecccChh
Q psy4407          28 FETEMLTCKY--CYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCF--ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEY  103 (130)
Q Consensus        28 ~~~~~~~C~~--C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~  103 (130)
                      ..+++|.|..  |++.|.....|..|.       ..|.++++|.|.  .|++.|.....|..|++.|+++++|.|..|++
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   83 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHL-------RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNR   83 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHH-------HHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCC
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHH-------HHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcC
Confidence            4567899996  999999999999998       899999999996  69999999999999999999999999999999


Q ss_pred             hhcCcchHHHhhhhcCCC
Q psy4407         104 KAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus       104 ~f~~~~~l~~h~~~~h~g  121 (130)
                      .|.....|..|+ ++|.+
T Consensus        84 ~f~~~~~l~~H~-~~H~~  100 (100)
T 2ebt_A           84 SFSRSDHLALHM-KRHQN  100 (100)
T ss_dssp             BCSSHHHHHHHH-HHHCC
T ss_pred             ccCCHHHHHHHH-HHhCC
Confidence            999999999999 77764

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.73  E-value=6.3e-19  Score=92.71  Aligned_cols=58  Identities=12%  Similarity=0.259  Sum_probs=55.5

Q ss_pred             CcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          30 TEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        30 ~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      |+||.|..||+.|.....|..|+       ++|++++||.|.+||+.|.....|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~-------~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHR-------RAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHH-------HHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHH-------HHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            78999999999999999999999       99999999999999999999999999999999864

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.71  E-value=9.7e-20  Score=102.96  Aligned_cols=84  Identities=14%  Similarity=0.185  Sum_probs=78.3

Q ss_pred             CcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcc
Q psy4407          30 TEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKS  109 (130)
Q Consensus        30 ~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~  109 (130)
                      ++||.|..|++.|.....|..|.       .+|.++++|.|..|++.|.....|..|++.|.+ .+|.|..|++.|....
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~-------~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~   72 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHI-------RTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNY   72 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHH-------HHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHH-------HHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHh
Confidence            57899999999999999999998       899999999999999999999999999999885 8899999999999999


Q ss_pred             hHHHhhhhcCCC
Q psy4407         110 NLTKHMSKKHPS  121 (130)
Q Consensus       110 ~l~~h~~~~h~g  121 (130)
                      .|..|+++.|..
T Consensus        73 ~L~~H~~~~h~~   84 (88)
T 1llm_C           73 HLENEVARLKKL   84 (88)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            999999776653

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=8.5e-18  Score=97.40  Aligned_cols=66  Identities=20%  Similarity=0.513  Sum_probs=47.8

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHH-hh---cCCCCeecccChhhhcCcchHHHh-hhhcCCCCCCCCccC
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIR-QH---TGEKPFSCLLCEYKAAKKSNLTKH-MSKKHPSSYEDPFFV  129 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h---~~~k~~~C~~C~~~f~~~~~l~~h-~~~~h~g~~e~~~~C  129 (130)
                      ...|++||.|..|++.|.....|..|++ .|   ++++||.|.+|++.|.....|..| + ++|+|  |+||.|
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~-r~Htg--ekpy~C   82 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNL-KYHPG--EENFKL   82 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHH-HTSTT--CCCEEE
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHH-HhcCC--CCCeeC
Confidence            3456777777777777777777777776 46   456777777777777777777777 5 77777  777776

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.70  E-value=3.3e-17  Score=91.90  Aligned_cols=64  Identities=25%  Similarity=0.413  Sum_probs=59.5

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      ..+.+.++|.|.+|++.|.....|..|+++|++++||.|..|++.|.....|..|++++|++  |+
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~--E~   84 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPS--EN   84 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTT--CC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcC--CC
Confidence            45567888999999999999999999999999999999999999999999999998889998  75

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.69  E-value=2.3e-17  Score=90.20  Aligned_cols=65  Identities=26%  Similarity=0.576  Sum_probs=59.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF  127 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~  127 (130)
                      ..+.++++|.|..|++.|.....|..|++.|+++++|.|..|++.|.....|..|+ ++|++  ++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT-RIHSG--EKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHH-HHHCC--SCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHH-HhcCC--CCCC
Confidence            45667889999999999999999999999999999999999999999999999999 88999  9997

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.1e-17  Score=92.42  Aligned_cols=71  Identities=17%  Similarity=0.400  Sum_probs=59.2

Q ss_pred             ccCcceeccc--ccccccCccccccccCCCCCCcc-cCCCCceeeCCC--CCCcccCchhHHHHHHhhcCCCCeecccCh
Q psy4407          28 FETEMLTCKY--CYEFLPNDAEIIADHCKFCSYKL-RPDKTYIFTCFA--CEYHSAKRSHIKEHIRQHTGEKPFSCLLCE  102 (130)
Q Consensus        28 ~~~~~~~C~~--C~~~~~~~~~l~~h~c~~C~~~~-~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~  102 (130)
                      +++++|.|..  |++.|.....|..|.       . .|.++++|.|..  |++.|.....|..|+++|+++++|.|..|+
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~-------~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~   75 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHK-------KYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG   75 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHH-------HHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHH-------HHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCC
Confidence            4677888876  888888888888886       6 688888888888  888888888888888888888888888888


Q ss_pred             hhh
Q psy4407         103 YKA  105 (130)
Q Consensus       103 ~~f  105 (130)
                      +.|
T Consensus        76 k~F   78 (79)
T 2dlk_A           76 PSS   78 (79)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            876

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=3.4e-17  Score=91.71  Aligned_cols=77  Identities=13%  Similarity=0.150  Sum_probs=51.7

Q ss_pred             eehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCC----ceeeCCCCCCcccCchhHHHHHHhhcCCCC
Q psy4407          20 KVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKT----YIFTCFACEYHSAKRSHIKEHIRQHTGEKP   95 (130)
Q Consensus        20 ~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~----~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~   95 (130)
                      ..| +++|+++++|.|..|++.|.....|..|.       ..+..+    ++|.|.+|++.|.....|..|++.|+++++
T Consensus         4 ~~H-~~~H~~~k~~~C~~C~~~f~~~~~l~~H~-------~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~   75 (86)
T 1x6h_A            4 GSS-GRTHTGEKPYACSHCDKTFRQKQLLDMHF-------KRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG   75 (86)
T ss_dssp             TCC-STTCCCCCCEECSSSSCEESSHHHHHHHH-------HHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCS
T ss_pred             ccc-cceecCCCCCcCCCCCCccCCHHHHHHHH-------HHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCC
Confidence            344 46677777777777777777777777774       444433    567777777777777777777777777777


Q ss_pred             eecccChhh
Q psy4407          96 FSCLLCEYK  104 (130)
Q Consensus        96 ~~C~~C~~~  104 (130)
                      +.|..|+..
T Consensus        76 ~~~~~~~~~   84 (86)
T 1x6h_A           76 VEGENSGPS   84 (86)
T ss_dssp             CCCCCCCCC
T ss_pred             cccCCCCCC
Confidence            777666654

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=5.4e-17  Score=89.34  Aligned_cols=67  Identities=22%  Similarity=0.324  Sum_probs=63.7

Q ss_pred             hhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          25 DFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        25 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ..+.++++|.|..|++.|.....|..|+       ..|.++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHR-------RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHH-------TTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHH-------HHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            4677899999999999999999999998       899999999999999999999999999999999999987

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=3.6e-16  Score=87.50  Aligned_cols=74  Identities=11%  Similarity=0.243  Sum_probs=67.0

Q ss_pred             ccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCC----CCeecccChhhhcCcchHHHhhhhcCCCC
Q psy4407          47 EIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE----KPFSCLLCEYKAAKKSNLTKHMSKKHPSS  122 (130)
Q Consensus        47 ~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~----k~~~C~~C~~~f~~~~~l~~h~~~~h~g~  122 (130)
                      .|..|+       ++|.++++|.|.+|++.|.....|..|++.+.+.    ++|.|..|++.|.....|..|+ ++|.+ 
T Consensus         2 s~~~H~-------~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~-~~h~~-   72 (86)
T 1x6h_A            2 SSGSSG-------RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA-DNCAG-   72 (86)
T ss_dssp             TTTCCS-------TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHH-HHCCC-
T ss_pred             Cccccc-------ceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHH-HHccC-
Confidence            355666       8899999999999999999999999999877654    7899999999999999999999 99999 


Q ss_pred             CCCCccCC
Q psy4407         123 YEDPFFVS  130 (130)
Q Consensus       123 ~e~~~~C~  130 (130)
                       ++++.|+
T Consensus        73 -~~~~~~~   79 (86)
T 1x6h_A           73 -PDGVEGE   79 (86)
T ss_dssp             -CCSCCCC
T ss_pred             -CCCcccC
Confidence             9999884

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=1.5e-16  Score=86.00  Aligned_cols=65  Identities=28%  Similarity=0.531  Sum_probs=54.7

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCcc
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFF  128 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~  128 (130)
                      +++++++|.|.+|++.|.....|..|+++|+++++|.|..|++.|.....|..|+ ++|.+  ++|..
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~-~~h~~--~~p~p   67 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFHG--DMSGP   67 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHH-HHHHS--SSCCS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHH-HHHhC--CCCCC
Confidence            4677888888888888888888888888888888888888888888888888888 77887  77754

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.64  E-value=5.8e-17  Score=90.48  Aligned_cols=77  Identities=18%  Similarity=0.464  Sum_probs=72.6

Q ss_pred             ceec--ccccccccCccccccccCCCCCCcccCCCCceeeCCC--CCCcccCchhHHHHHHhhcCCCCeeccc---Chhh
Q psy4407          32 MLTC--KYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFA--CEYHSAKRSHIKEHIRQHTGEKPFSCLL---CEYK  104 (130)
Q Consensus        32 ~~~C--~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~k~~~C~~---C~~~  104 (130)
                      ||.|  ..|++.|.....|..|.       ++|.++++|.|..  |++.|.....|..|+++|++   |.|..   |++.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~   70 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQ-------FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFV   70 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHH-------HHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCE
T ss_pred             CccCCCCCCCcccCCHHHHHHHH-------HHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCc
Confidence            6899  89999999999999998       8999999999988  99999999999999999998   99999   9999


Q ss_pred             hcCcchHHHhhhhcC
Q psy4407         105 AAKKSNLTKHMSKKH  119 (130)
Q Consensus       105 f~~~~~l~~h~~~~h  119 (130)
                      |.....|..|+ ++|
T Consensus        71 f~~~~~l~~H~-~~h   84 (85)
T 2j7j_A           71 GKTWTLYLKHV-AEC   84 (85)
T ss_dssp             ESSHHHHHHHH-HHC
T ss_pred             cCCHHHHHHHH-Hhc
Confidence            99999999999 554

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.63  E-value=1.2e-16  Score=92.87  Aligned_cols=86  Identities=14%  Similarity=0.225  Sum_probs=74.6

Q ss_pred             Ccceeeee----eeccccceehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCc
Q psy4407           5 PRSYYVLF----LFYSSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKR   80 (130)
Q Consensus         5 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~   80 (130)
                      .++|.|..    |.....|..| ++.|.++++|.|..|++.|.....|..|.       ..|.++++|.|.+|++.|...
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~   86 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHR-------YIHSKEKPFKCQECGKGFCQS   86 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHH-HHHHCCSCCCBCSSSCCBCSCHHHHHHHG-------GGSCCCCTTSCSSSCCCCSSH
T ss_pred             CcCeECCCCCCccCCHHHHHHH-HHHcCCCCCcCCCCccchhCCHHHHHHHH-------HHhCCCCCeECCCcCCcccCH
Confidence            34555554    3345567777 68999999999999999999999999998       999999999999999999999


Q ss_pred             hhHHHHHHhhcCCCCeec
Q psy4407          81 SHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        81 ~~l~~h~~~h~~~k~~~C   98 (130)
                      ..|..|+++|+++++|..
T Consensus        87 ~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           87 RTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHhCCCCCCcC
Confidence            999999999999998854

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=8.4e-16  Score=84.49  Aligned_cols=66  Identities=27%  Similarity=0.519  Sum_probs=57.0

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHH-hhcCC-CCeecccChhhhcCcchHHHhhhhcCCCCCCCCc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIR-QHTGE-KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF  127 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h~~~-k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~  127 (130)
                      ++|+++++|.|.+|++.|.....|..|++ .|+++ ++|.|..|++.|.....|..|++..|.+  +.|.
T Consensus         8 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~--~~p~   75 (77)
T 2ct1_A            8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY--SGPS   75 (77)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC--SCCC
T ss_pred             cccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC--CCCC
Confidence            78889999999999999999999999987 67764 7899999999999999999999667777  7764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=4.4e-16  Score=85.83  Aligned_cols=66  Identities=21%  Similarity=0.393  Sum_probs=59.2

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcC---CCCeecccChhhhcCcchHHHhhhhcCCCCCCCCcc
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTG---EKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFF  128 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~---~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~  128 (130)
                      +|+++++|.|.+|++.|.....|..|++.|++   +++|.|..|++.|.....|..|++..|.+  ++|..
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~--~~~~~   69 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA--LLLAP   69 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT--TSSCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC--CCCCc
Confidence            47789999999999999999999999999985   88999999999999999999999888988  87754

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.4e-16  Score=91.49  Aligned_cols=78  Identities=15%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             cccCccccccccCCCCCCcccCCCCceeeCCCCCCcc-cCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHh-hhhc
Q psy4407          41 FLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHS-AKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKH-MSKK  118 (130)
Q Consensus        41 ~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f-~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h-~~~~  118 (130)
                      .|.....|..|.       +.+.++++|.|.+|++.| .....|..|+++| ++++|.|.+|++.|.....|..| + ++
T Consensus        15 ~~~~~~~~~~~~-------~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~-~~   85 (96)
T 2ctd_A           15 VYAAGSLEEQWY-------LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVM-AN   85 (96)
T ss_dssp             SSCTTCHHHHHH-------HHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHH-HH
T ss_pred             CCCCchHHHHHH-------HHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhH-Hh
Confidence            344555666665       667778889999999999 8888999999988 88899999999999999999999 6 88


Q ss_pred             CCCCCCCCccC
Q psy4407         119 HPSSYEDPFFV  129 (130)
Q Consensus       119 h~g~~e~~~~C  129 (130)
                      |++  +..|.+
T Consensus        86 H~~--~p~~~~   94 (96)
T 2ctd_A           86 HNS--LPSGPS   94 (96)
T ss_dssp             TCC--CSSCSC
T ss_pred             cCC--CCCCCC
Confidence            887  554544

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.2e-16  Score=92.52  Aligned_cols=72  Identities=18%  Similarity=0.351  Sum_probs=64.5

Q ss_pred             hhcccCcceecccccccccCccccccccCCCCCCcc-cC---CCCceeeCCCCCCcccCchhHHHH-HHhhcCCCCeecc
Q psy4407          25 DFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKL-RP---DKTYIFTCFACEYHSAKRSHIKEH-IRQHTGEKPFSCL   99 (130)
Q Consensus        25 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~-~h---~~~~~~~C~~C~~~f~~~~~l~~h-~~~h~~~k~~~C~   99 (130)
                      ....|++||.|..||+.|.....|..|.       + .|   .+++||.|.+||+.|.....|..| +++|++++||.|.
T Consensus        11 ~~~~gekpy~C~~Cgk~F~~~~~L~~H~-------r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~   83 (102)
T 2ghf_A           11 QNKKVEGGYECKYCTFQTPDLNMFTFHV-------DSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT   83 (102)
T ss_dssp             TCCCCCSSEECSSCSCEESCHHHHHHHH-------HHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEE
T ss_pred             ccCCCCcCcCCCCCCCccCCHHHHHHHH-------HhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCC
Confidence            3457899999999999999999999996       6 48   678999999999999999999999 8999999999998


Q ss_pred             cChh
Q psy4407         100 LCEY  103 (130)
Q Consensus       100 ~C~~  103 (130)
                      ++..
T Consensus        84 ~~~~   87 (102)
T 2ghf_A           84 MVKR   87 (102)
T ss_dssp             ECCC
T ss_pred             cccC
Confidence            7543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=6.8e-17  Score=93.02  Aligned_cols=61  Identities=16%  Similarity=0.257  Sum_probs=30.6

Q ss_pred             ccCCCCceeeCCCCCCccc-CchhHHHHHHhhcC-CCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          60 LRPDKTYIFTCFACEYHSA-KRSHIKEHIRQHTG-EKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~-~~~~l~~h~~~h~~-~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +.|.++++|.|.+|++.|. ....|..|+++|++ +++|.|..|++.|.....|..|+ ++|.+
T Consensus        17 ~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~-~~h~~   79 (98)
T 2gqj_A           17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT-MAEHS   79 (98)
T ss_dssp             HTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHH-HHHSC
T ss_pred             HHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHH-HHHcC
Confidence            4444445555555555555 45555555555444 44555555555555555555555 44444

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=3.6e-16  Score=84.96  Aligned_cols=61  Identities=31%  Similarity=0.538  Sum_probs=50.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ++|.++++|.|.+|++.|.....|..|++.|+++++|.|..|++.|.....|..|+ ++|++
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~   67 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ-RIHTS   67 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHH-HHHHS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHH-HhcCC
Confidence            56777888888888888888888888888888888888888888888888888888 67776

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=9.2e-16  Score=89.72  Aligned_cols=67  Identities=25%  Similarity=0.528  Sum_probs=63.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      ..|+++++|.| .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+ ++|.+  ++||.|+
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~--~~~~~C~   69 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTG--IKPYECN   69 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHH-TTTCC--CCCEECS
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHH-HHcCC--CCCeeCC
Confidence            46789999999 99999999999999999999999999999999999999999999 89999  9999985

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=4.1e-16  Score=91.90  Aligned_cols=77  Identities=10%  Similarity=0.037  Sum_probs=69.3

Q ss_pred             CccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHh--hcCCCCe-ecccChhhh--cCcchHHHhhhhc
Q psy4407          44 NDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQ--HTGEKPF-SCLLCEYKA--AKKSNLTKHMSKK  118 (130)
Q Consensus        44 ~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~--h~~~k~~-~C~~C~~~f--~~~~~l~~h~~~~  118 (130)
                      +...|..|.       ++|.++++|.|.+|++.|.....|..|++.  |.+++++ .|..|++.|  .....|..|+ ++
T Consensus         3 s~~~l~~H~-------~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~-~~   74 (115)
T 2dmi_A            3 SGSSGKLYG-------SIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME-GK   74 (115)
T ss_dssp             CCCCCCCCC-------CCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCC-CS
T ss_pred             cchhhhhhe-------eeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHh-hc
Confidence            346788888       899999999999999999999999999998  7777765 499999999  8899999999 89


Q ss_pred             CCCCCCCCccCC
Q psy4407         119 HPSSYEDPFFVS  130 (130)
Q Consensus       119 h~g~~e~~~~C~  130 (130)
                      |.+  ++||.|+
T Consensus        75 H~~--~~~~~C~   84 (115)
T 2dmi_A           75 EDA--QKVLKCM   84 (115)
T ss_dssp             CCC--CSSCBCS
T ss_pred             cCC--CcceECC
Confidence            999  9999995

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.60  E-value=3e-16  Score=85.70  Aligned_cols=65  Identities=18%  Similarity=0.433  Sum_probs=61.0

Q ss_pred             hhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCe
Q psy4407          25 DFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPF   96 (130)
Q Consensus        25 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~   96 (130)
                      ..+.++++|.|..|++.|.....|..|.       +.|.++++|.|.+|++.|.....|..|+++|++++||
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~-------~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHK-------TVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHH-------HHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHH-------HHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            3567899999999999999999999998       8999999999999999999999999999999999886

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.60  E-value=7.9e-16  Score=87.84  Aligned_cols=67  Identities=34%  Similarity=0.687  Sum_probs=63.3

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      ++.++++|.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+ ++|.+  ++||.|+
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~--~~~~~C~   68 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSD--ERPFKCQ   68 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHH-HHSCC--CCCEECS
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHH-HHhCC--CCCccCC
Confidence            3567899999999999999999999999999999999999999999999999999 88999  9999985

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=7.4e-16  Score=84.96  Aligned_cols=65  Identities=26%  Similarity=0.430  Sum_probs=61.1

Q ss_pred             CCCceeeCCC--CCCcccCchhHHHHHH-hhcCCCCeeccc--ChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          63 DKTYIFTCFA--CEYHSAKRSHIKEHIR-QHTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        63 ~~~~~~~C~~--C~~~f~~~~~l~~h~~-~h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      +++++|.|..  |++.|.....|..|++ .|+++++|.|..  |++.|.....|..|+ ++|++  ++||.|+
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   72 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM-KLHSD--TRDYICE   72 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHH-HHHHT--SCCCSCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHH-HHhCC--CCCeeCC
Confidence            5678899987  9999999999999999 799999999999  999999999999999 89999  9999995

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.58  E-value=2.1e-15  Score=85.85  Aligned_cols=66  Identities=24%  Similarity=0.561  Sum_probs=62.0

Q ss_pred             CCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCC--CCccCC
Q psy4407          62 PDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYE--DPFFVS  130 (130)
Q Consensus        62 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e--~~~~C~  130 (130)
                      .+++++|.|.+|++.|.....|..|++.|+++++|.|..|++.|.....|..|+ ++|.+  +  +||.|+
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~--~~~~~~~C~   69 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDG--SVGKPYICQ   69 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHH-HHHCC--CCCSSBCCS
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHH-HHhcC--CCCCceECC
Confidence            357889999999999999999999999999999999999999999999999999 88888  7  999985

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=2.4e-16  Score=85.55  Aligned_cols=61  Identities=16%  Similarity=0.166  Sum_probs=45.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      +.|.++++|.|.+|++.|.....|..       +++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus        11 ~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~-~~H~~--~~~~~C~   71 (73)
T 2ctu_A           11 KIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDE-GNESG--KKTSGPS   71 (73)
T ss_dssp             CCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCS-SCCCC--CCCSSCC
T ss_pred             HHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHH-HhhcC--CCCCCCC
Confidence            55555666666666666655555443       67888888999988888888888 88888  8888885

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=1.3e-15  Score=82.30  Aligned_cols=64  Identities=14%  Similarity=0.240  Sum_probs=60.5

Q ss_pred             hcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCe
Q psy4407          26 FRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPF   96 (130)
Q Consensus        26 ~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~   96 (130)
                      .|+++++|.|..|++.|.....|..|+       .+|.++++|.|.+|++.|.....|..|++.|++++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~-------~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHE-------RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHH-------GGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHH-------HHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            478899999999999999999999998       8999999999999999999999999999999998874

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.56  E-value=1.4e-15  Score=82.62  Aligned_cols=64  Identities=14%  Similarity=0.258  Sum_probs=60.2

Q ss_pred             hhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          24 VDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        24 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      .++|+++++|.|..|++.|.....|..|+       ..|.++++|.|.+|++.|.....|..|+++|+++.
T Consensus         6 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-------~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            6 SGIHSGEKPYGCVECGKAFSRSSILVQHQ-------RVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CCTTTTCCCEECSSSCCEESSHHHHHHHH-------HGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CcccCCCCCccCCCCCCccCCHHHHHHHH-------HhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            46789999999999999999999999998       89999999999999999999999999999998754

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.55  E-value=4.8e-15  Score=76.75  Aligned_cols=56  Identities=38%  Similarity=0.745  Sum_probs=51.9

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      ||.|..|++.|.....|..|+++|+++++|.|..|++.|.....|..|+ ++|.+  ++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~--~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM-KSKAH--SK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHH-HSSSS--CC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHH-HHhcc--cC
Confidence            5889999999999999999999999999999999999999999999999 88888  65

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=4.1e-15  Score=77.82  Aligned_cols=56  Identities=36%  Similarity=0.698  Sum_probs=51.8

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +||.|..|++.|.....|..|++.|+++++|.|..|++.|.....|..|++.+|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999997688887

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.55  E-value=2.3e-15  Score=77.97  Aligned_cols=56  Identities=36%  Similarity=0.683  Sum_probs=47.6

Q ss_pred             CCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCC
Q psy4407          64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        64 ~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                      |+++|.|..|++.|.....|..|+++|+++++|.|..|++.|.....|..|+ ++|.
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHL-ERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHH-HHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHH-HHhc
Confidence            4678999999999999999999999999999999999999999999999999 5443

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=4.5e-16  Score=89.54  Aligned_cols=74  Identities=12%  Similarity=0.103  Sum_probs=66.6

Q ss_pred             ccceehhhhhcccCcceeccccccccc-CccccccccCCCCCCcccCCC-CceeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          17 SGLKVSEVDFRFETEMLTCKYCYEFLP-NDAEIIADHCKFCSYKLRPDK-TYIFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~C~~C~~~~~-~~~~l~~h~c~~C~~~~~h~~-~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      ..+..| ++.|.++++|.|..|++.|. ....|..|+       ++|.+ +++|.|.+|++.|.....|..|++.|++++
T Consensus        10 ~~~~~h-~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~-------~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k   81 (98)
T 2gqj_A           10 GPEEQW-QRAIHERGEAVCPTCNVVTRKTLVGLKKHM-------EVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK   81 (98)
T ss_dssp             CSCSHH-HHTTTTTSCCCCTTTCCCCSSCSHHHHHHH-------HHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSC
T ss_pred             CcHHHH-HHHhccCCCcCCCCCCCChhhhHHHHHHHH-------HHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCC
Confidence            344555 68999999999999999999 999999998       88888 999999999999999999999999999998


Q ss_pred             Ceec
Q psy4407          95 PFSC   98 (130)
Q Consensus        95 ~~~C   98 (130)
                      |...
T Consensus        82 p~~~   85 (98)
T 2gqj_A           82 PSDA   85 (98)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            8643

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.54  E-value=2.7e-15  Score=84.54  Aligned_cols=64  Identities=31%  Similarity=0.716  Sum_probs=59.4

Q ss_pred             CCceeeCC--CCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          64 KTYIFTCF--ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        64 ~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      ++++|.|.  .|++.|.....|..|++.|.++++|.|..|++.|.....|..|+ ++|.+  ++||.|+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~--~~~~~C~   66 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTG--EKPFACD   66 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH-HHHHC--CCCEECT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHH-HHcCC--CCCccCC
Confidence            46789998  69999999999999999999999999999999999999999999 89999  9999985

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.53  E-value=3.4e-15  Score=82.69  Aligned_cols=61  Identities=26%  Similarity=0.554  Sum_probs=58.6

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      ||.|..|++.|.....|..|++.|.++++|.|..|++.|.....|..|+ ++|.+  ++||.|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~--~~~~~C~   61 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTG--EKPHKCQ   61 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHH-HHHHT--CCCEECT
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHH-HHhcC--CCCCcCC
Confidence            5899999999999999999999999999999999999999999999999 89999  9999985

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.2e-16  Score=86.76  Aligned_cols=71  Identities=11%  Similarity=0.151  Sum_probs=63.9

Q ss_pred             cccceehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCC
Q psy4407          16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKP   95 (130)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~   95 (130)
                      ...|..| ++.|.++++|.|..||+.|.....|..              +++|.|..|++.|.....|..|+++|+++++
T Consensus         3 ~~~l~~H-~~~h~~~~~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~   67 (73)
T 2ctu_A            3 SGSSGKR-QKIHLGDRSQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQEAALNKDEGNESGKKT   67 (73)
T ss_dssp             CCSCCCC-CCCCCCCSEEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCC
T ss_pred             chhHHHH-HHHhCCCCCeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCC
Confidence            4567778 589999999999999999998888742              6789999999999999999999999999999


Q ss_pred             eecccC
Q psy4407          96 FSCLLC  101 (130)
Q Consensus        96 ~~C~~C  101 (130)
                      |.|.+|
T Consensus        68 ~~C~~C   73 (73)
T 2ctu_A           68 SGPSSG   73 (73)
T ss_dssp             SSCCCC
T ss_pred             CCCCCC
Confidence            999877

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=4.5e-15  Score=79.13  Aligned_cols=57  Identities=21%  Similarity=0.430  Sum_probs=42.0

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHh-h-cCCCCeecccChhhhcCcchHHHhhh
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQ-H-TGEKPFSCLLCEYKAAKKSNLTKHMS  116 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~-h-~~~k~~~C~~C~~~f~~~~~l~~h~~  116 (130)
                      ++|.++++|.|..|++.|.....|..|++. | +++++|.|..|++.|.....|..|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~   61 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK   61 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHH
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHH
Confidence            356667777777777777777777777776 5 46777777777777777777777773

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.51  E-value=5.8e-15  Score=82.70  Aligned_cols=64  Identities=17%  Similarity=0.275  Sum_probs=58.5

Q ss_pred             hhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHH-HhhcCCC
Q psy4407          24 VDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHI-RQHTGEK   94 (130)
Q Consensus        24 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~-~~h~~~k   94 (130)
                      +..+...++|.|+.||+.|.....|..|+       ++|.+++||.|.+|++.|.....|..|+ +.|+++.
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~-------~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHL-------RLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHH-------HTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhh-------hhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            35677889999999999999999999999       9999999999999999999999999997 4787764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.51  E-value=3.8e-15  Score=85.43  Aligned_cols=74  Identities=15%  Similarity=0.099  Sum_probs=64.1

Q ss_pred             eccccceehhhhhcccCcceecccccccc-cCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHH-HHhhc
Q psy4407          14 FYSSGLKVSEVDFRFETEMLTCKYCYEFL-PNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEH-IRQHT   91 (130)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~~-~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h-~~~h~   91 (130)
                      .....+..+ .+.+.++++|.|..|++.| .....|..|+       ++| ++++|.|.+|++.|.....|..| +++|+
T Consensus        17 ~~~~~~~~~-~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~-------~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           17 AAGSLEEQW-YLEIVDKGSVSCPTCQAVGRKTIEGLKKHM-------ENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CTTCHHHHH-HHHHHHTSCEECTTTCSCEESSHHHHHHHH-------HHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CCchHHHHH-HHHhcCCCCcCCCCCCCCcccCHHHHHHHH-------HHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            344445555 5788999999999999999 9999999998       899 99999999999999999999999 88998


Q ss_pred             CCCCe
Q psy4407          92 GEKPF   96 (130)
Q Consensus        92 ~~k~~   96 (130)
                      ++..+
T Consensus        88 ~~p~~   92 (96)
T 2ctd_A           88 SLPSG   92 (96)
T ss_dssp             CCSSC
T ss_pred             CCCCC
Confidence            64433

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=7.4e-15  Score=83.62  Aligned_cols=62  Identities=18%  Similarity=0.178  Sum_probs=57.0

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHh-hcCCCC--------eecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQ-HTGEKP--------FSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~-h~~~k~--------~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      ..+.|..|++.|.....|..|++. |+++++        |.|..|++.|.....|..|+ ++|+|  ++||.|+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RVHTG--EKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHH-HHHHT--CCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHH-HhcCC--CCCCCCC
Confidence            346799999999999999999998 888887        89999999999999999999 89999  9999996

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.50  E-value=3.3e-16  Score=94.15  Aligned_cols=83  Identities=18%  Similarity=0.263  Sum_probs=71.9

Q ss_pred             ccCcceeccccccccc------CccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          28 FETEMLTCKYCYEFLP------NDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        28 ~~~~~~~C~~C~~~~~------~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ..++.+.|..|++.|.      ....|..|        ..|.+++||.|.+|++.|.....|..|+++|  ++||.|..|
T Consensus        37 ~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h--------~~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C  106 (129)
T 2wbt_A           37 PEQKRLIRAIVKTLIHNPQLLDESSYLYRL--------LASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVC  106 (129)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTTTHHHHHHH--------HHHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTT
T ss_pred             hhhCcccchhhhcccCCCcccCCHHHHHHH--------HHhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCC
Confidence            4556788888887766      44556666        5678899999999999999999999999999  899999999


Q ss_pred             hhhhcCcchHHHhhhhcCCC
Q psy4407         102 EYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus       102 ~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ++.|.....|..|+ ++|+|
T Consensus       107 ~k~f~~~~~l~~H~-~~h~~  125 (129)
T 2wbt_A          107 KKEFTSTDSALDHV-CKKHN  125 (129)
T ss_dssp             CCBCSSHHHHHHHH-HHTTC
T ss_pred             CcccCCHHHHHHHH-HHHCC
Confidence            99999999999999 88887

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=6.5e-15  Score=78.48  Aligned_cols=61  Identities=10%  Similarity=0.241  Sum_probs=56.5

Q ss_pred             hhcccCcceecccccccccCccccccccCCCCCCccc-C-CCCceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          25 DFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLR-P-DKTYIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        25 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~-h-~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      ++|+++++|.|..|++.|.....|..|.       .. | .++++|.|..|++.|.....|..|++.+.+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~-------~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHY-------VTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHH-------HHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHH-------HHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            5789999999999999999999999997       66 7 689999999999999999999999998765

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=1.3e-14  Score=79.71  Aligned_cols=69  Identities=17%  Similarity=0.291  Sum_probs=59.7

Q ss_pred             ceehhhhhcccCcceecccccccccCccccccccCCCCCCcc-cCCCC-ceeeCCCCCCcccCchhHHHHHHhh-cCCCC
Q psy4407          19 LKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKL-RPDKT-YIFTCFACEYHSAKRSHIKEHIRQH-TGEKP   95 (130)
Q Consensus        19 ~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~-~h~~~-~~~~C~~C~~~f~~~~~l~~h~~~h-~~~k~   95 (130)
                      +..| +++|+++++|.|..|++.|.....|..|+       . .|.++ ++|.|.+|++.|.....|..|++.+ ..+.|
T Consensus         3 ~~~H-~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-------~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            3 SGSS-GRTHSGEKPYECYICHARFTQSGTMKMHI-------LQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCC-CCCCSCCCSEECTTTCCEESCHHHHHHHH-------HHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             CCcc-ccccCCCCCeECCCcCchhCCHHHHHHHH-------HHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            4556 58999999999999999999999999996       5 57764 8999999999999999999999975 44444

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=7.9e-14  Score=75.64  Aligned_cols=60  Identities=30%  Similarity=0.676  Sum_probs=51.4

Q ss_pred             ccCCCCceeeCC--CCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCC
Q psy4407          60 LRPDKTYIFTCF--ACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        60 ~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                      ..+.++++|.|.  .|++.|.....|..|++.|+++++|.|..|++.|.....|..|+ ++|+
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~Ht   73 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHT   73 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH-TTCC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHH-HhcC
Confidence            456788889996  59999999999999999998889999999999999999999998 7664

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.6e-14  Score=84.05  Aligned_cols=65  Identities=11%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      +.|.++++|.|.+|++.|.....|..|++.|.  ++|.|..|++.|.....|..|+ + |++  ++||+|+
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~-~-H~~--~~~~~C~   73 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHE-S-KCE--YKKLTCL   73 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHH-H-HCS--TGGGEEG
T ss_pred             cccCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHH-H-cCC--CCCccCc
Confidence            67888999999999999999999999999984  7999999999999999999999 6 999  9999984

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.45  E-value=1.3e-14  Score=75.09  Aligned_cols=57  Identities=19%  Similarity=0.466  Sum_probs=50.1

Q ss_pred             cCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          29 ETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        29 ~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      |+++|.|..|++.|.....|..|+       .+|.++++|.|..|++.|.....|..|++.|.+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHL-------RTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHH-------HHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHH-------HHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            468999999999999999999998       899999999999999999999999999998753

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.44  E-value=8e-15  Score=82.52  Aligned_cols=61  Identities=33%  Similarity=0.621  Sum_probs=55.3

Q ss_pred             CceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          65 TYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        65 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      ++||.|..|++.|.....|..|+++|+++++|.|..|++.|.....|..|+ .+|.+   .+|.|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~h~~---~~~~c   61 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQHI---LPILE   61 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH-HHHTH---HHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHH-HHhCC---CcchH
Confidence            578999999999999999999999999999999999999999999999999 66654   55554

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1e-13  Score=73.94  Aligned_cols=60  Identities=18%  Similarity=0.300  Sum_probs=53.4

Q ss_pred             CCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc-cChhhhcCcchHHHhhhhcCCCCCCCC
Q psy4407          62 PDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL-LCEYKAAKKSNLTKHMSKKHPSSYEDP  126 (130)
Q Consensus        62 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~-~C~~~f~~~~~l~~h~~~~h~g~~e~~  126 (130)
                      .-+++||.|..|++.|. ...|..|+++ ++++||.|. .|++.|.....|..|+ ++|.+  .+|
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~-~~hc~--~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHL-KDSCN--TAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHH-HTTSS--SCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHH-Hhhcc--cCc
Confidence            34678899999999999 9999999998 899999999 9999999999999999 88887  665

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.44  E-value=3.7e-14  Score=73.30  Aligned_cols=56  Identities=11%  Similarity=0.287  Sum_probs=53.3

Q ss_pred             ceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          32 MLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      ||.|..|++.|.....|..|.       ..|.++++|.|..|++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHI-------RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHH-------HHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHH-------HhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            689999999999999999998       89999999999999999999999999999998765

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=2.7e-14  Score=78.54  Aligned_cols=65  Identities=15%  Similarity=0.169  Sum_probs=58.2

Q ss_pred             hcccCcceecccccccccCccccccccCCCCCCcccCCC---CceeeCCCCCCcccCchhHHHHH-HhhcCCCCee
Q psy4407          26 FRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDK---TYIFTCFACEYHSAKRSHIKEHI-RQHTGEKPFS   97 (130)
Q Consensus        26 ~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~---~~~~~C~~C~~~f~~~~~l~~h~-~~h~~~k~~~   97 (130)
                      .|+++++|.|..|++.|.....|..|+       ..|.+   +++|.|.+|++.|.....|..|+ ..|.++++..
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~-------~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQ-------RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHH-------HHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHH-------HHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            478999999999999999999999998       88875   89999999999999999999999 5677776654

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.41  E-value=9.6e-14  Score=77.92  Aligned_cols=63  Identities=43%  Similarity=0.762  Sum_probs=59.2

Q ss_pred             CceeeCCC--CCCcccCchhHHHHHHhhcCCCCeecc--cChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          65 TYIFTCFA--CEYHSAKRSHIKEHIRQHTGEKPFSCL--LCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        65 ~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~k~~~C~--~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      ..+|.|..  |++.|.....|..|++.|.++++|.|.  .|++.|.....|..|+ ++|.+  ++||.|+
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~--~~~~~C~   69 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTG--HRPFQCQ   69 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHH-HHHHC--CCCEECS
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHH-HHcCC--CCCccCC
Confidence            45799999  999999999999999999999999997  6999999999999999 89999  9999985

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=4.6e-14  Score=76.59  Aligned_cols=67  Identities=18%  Similarity=0.249  Sum_probs=58.6

Q ss_pred             cceehhhhhcccCcceecc--cccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhc
Q psy4407          18 GLKVSEVDFRFETEMLTCK--YCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        18 ~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      .+..+....+.++++|.|+  .|++.|.....|..|.       ..|.++++|.|.+|++.|.....|..|+++|+
T Consensus         5 ~~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G            5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHI-------RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             ---CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHH-------HHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHH-------HhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            3455555678999999997  5999999999999998       89999999999999999999999999998874

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.40  E-value=3.4e-13  Score=77.20  Aligned_cols=65  Identities=40%  Similarity=0.787  Sum_probs=60.2

Q ss_pred             CCCceeeCCC--CCCcccCchhHHHHHHhhcCCCCeecc--cChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          63 DKTYIFTCFA--CEYHSAKRSHIKEHIRQHTGEKPFSCL--LCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        63 ~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~k~~~C~--~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      ...++|.|..  |++.|.....|..|++.|.++++|.|.  .|++.|.....|..|+ ++|.+  ++||.|+
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~--~~~~~C~   79 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKHTG--AKPFQCG   79 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHH-HHHTS--CCSCBCS
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHH-HHhCC--CCCeECC
Confidence            3467899996  999999999999999999999999996  6999999999999999 89999  9999995

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=2.2e-13  Score=71.07  Aligned_cols=56  Identities=14%  Similarity=0.364  Sum_probs=52.1

Q ss_pred             cceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHH-HhhcCC
Q psy4407          31 EMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHI-RQHTGE   93 (130)
Q Consensus        31 ~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~-~~h~~~   93 (130)
                      +||.|..|++.|.....|..|.       .+|.++++|.|..|++.|.....|..|+ +.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~-------~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHY-------RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHH-------HTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHH-------HHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            5799999999999999999998       8999999999999999999999999997 578764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.7e-13  Score=77.89  Aligned_cols=64  Identities=19%  Similarity=0.092  Sum_probs=58.0

Q ss_pred             cCcceecccccccccCccccccccCCCCCCccc-CCCCce--------eeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          29 ETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLR-PDKTYI--------FTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        29 ~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~-h~~~~~--------~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ....|.|..|++.|.....|..|+       .. |.++++        |.|.+|++.|.....|..|+++|++++||.|.
T Consensus        22 ~~~~~~C~~C~k~f~~~~~L~~H~-------~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           22 AQLSRPKKSCDRTFSTMHELVTHV-------TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SCSSSSCCCCCCCCSSHHHHHHHH-------HHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CcCCCcccccccccCCHHHHHHHH-------HHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344578999999999999999997       76 888877        89999999999999999999999999999985

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.35  E-value=1.6e-13  Score=66.58  Aligned_cols=42  Identities=24%  Similarity=0.425  Sum_probs=31.3

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQ-RTHAG--ESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHH-GGGCC--CCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHH-HhcCC--CCCCCCC
Confidence            345677777777777777777777777777 77777  7777774

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.3e-13  Score=67.36  Aligned_cols=42  Identities=33%  Similarity=0.439  Sum_probs=29.2

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQ-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHH-TTTSC--CCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            445666777777777777777777777777 66777  7777764

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.6e-13  Score=67.14  Aligned_cols=42  Identities=38%  Similarity=0.509  Sum_probs=25.2

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQ-KIHTG--EKPSGPS   44 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHH-TTTTT--SCCCCTT
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            344555666666666666666666666666 55666  6666653

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.33  E-value=1.2e-12  Score=66.95  Aligned_cols=48  Identities=21%  Similarity=0.428  Sum_probs=42.5

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHH-hhcCCCCeecccChhhhcC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIR-QHTGEKPFSCLLCEYKAAK  107 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h~~~k~~~C~~C~~~f~~  107 (130)
                      ..+.++++|.|.+|++.|.....|..|++ +|+++++|.|.+|++.|.+
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            45678899999999999999999999987 8999999999999998865

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.6e-13  Score=67.12  Aligned_cols=41  Identities=34%  Similarity=0.429  Sum_probs=22.4

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQ-KIHTG--EKPSGP   43 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHG-GGTSC--SSCSCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHH-HHhCC--CCCCCC
Confidence            334455555555555555555555555555 55555  555555

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=5.2e-13  Score=71.11  Aligned_cols=60  Identities=13%  Similarity=0.277  Sum_probs=54.6

Q ss_pred             cccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCC-CCCCcccCchhHHHHHHhhcCCCC
Q psy4407          27 RFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCF-ACEYHSAKRSHIKEHIRQHTGEKP   95 (130)
Q Consensus        27 ~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~-~C~~~f~~~~~l~~h~~~h~~~k~   95 (130)
                      .-++++|.|..|++.|. ...|..|.       ++ .+++||.|. .|++.|.....|..|+++|...++
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~-------~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQ-------YQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHH-------HH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHH-------HH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            45788999999999999 99999997       77 899999999 999999999999999999876654

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=3.3e-13  Score=66.11  Aligned_cols=42  Identities=21%  Similarity=0.410  Sum_probs=33.1

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHE-RTHAR--KSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHH-HHCCC--CCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHh-HhcCC--CCCCCCC
Confidence            556677788888888888888888888888 77888  8888874

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.32  E-value=3e-13  Score=66.83  Aligned_cols=42  Identities=31%  Similarity=0.415  Sum_probs=24.0

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQ-RSHTG--VKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHG-GGSSS--CCCSCCT
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            344555555566655666665555566665 55555  5666553

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.2e-13  Score=66.72  Aligned_cols=42  Identities=26%  Similarity=0.421  Sum_probs=35.2

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQ-KTHSG--QSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHH-TTSSS--SCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            566788888888888888888888888888 78888  8888885

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.1e-13  Score=66.78  Aligned_cols=42  Identities=36%  Similarity=0.499  Sum_probs=31.0

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHR-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHG-GGTSS--CCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHH-HhcCC--CCCcCCC
Confidence            455677777777777777777777777777 67777  7777774

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.3e-13  Score=66.72  Aligned_cols=41  Identities=37%  Similarity=0.490  Sum_probs=21.6

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQ-KIHTK--QKPSGP   43 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHH-HHTSC--CCCSSC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHH-HHcCC--CCCCCC
Confidence            334455555555555555555555555555 45555  555555

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.7e-13  Score=67.07  Aligned_cols=42  Identities=33%  Similarity=0.458  Sum_probs=29.5

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHR-GIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHH-TTTTT--SSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHH-HhhCC--CCCCCCC
Confidence            455666777777777777777777777777 66777  7777774

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.8e-13  Score=66.32  Aligned_cols=42  Identities=33%  Similarity=0.454  Sum_probs=32.2

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQ-RTHTG--ESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHH-HHTTT--SSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHH-HHhCC--CCCCCCC
Confidence            456677777888888888888878888887 77777  7888775

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.3e-13  Score=66.59  Aligned_cols=42  Identities=29%  Similarity=0.337  Sum_probs=34.6

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHT-RTHTG--ESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHH-TTTCC--SSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHh-hhcCC--CCCCCCC
Confidence            566778888888888888888888888888 78888  8888885

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.9e-13  Score=66.95  Aligned_cols=42  Identities=38%  Similarity=0.464  Sum_probs=28.8

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQ-KIHTG--ERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHH-TTTSC--CCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            445666667777777777777777777777 66777  7777764

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=2.9e-13  Score=66.97  Aligned_cols=42  Identities=31%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQ-RIHRG--EKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHH-GGGCS--CCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHH-hHhCC--CCCCCCC
Confidence            445566666666666666666666666666 56666  6666664

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.1e-13  Score=66.82  Aligned_cols=40  Identities=30%  Similarity=0.449  Sum_probs=21.3

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2ytn_A            4 GSSGTGKKPYKCNECGKVFTQNSHLARHR-GIHTG--EKPSGP   43 (46)
T ss_dssp             CCCCSCCSSCBCTTTCCBCSSHHHHHHHG-GGTSC--CCCCSC
T ss_pred             CcCCCCCcCeECCCCCCeeCCHHHHHHHh-hhcCC--CCCCCC
Confidence            34455555555555555555555555555 55555  555555

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=3.3e-13  Score=66.72  Aligned_cols=40  Identities=33%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2ene_A            4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQ-RIHTG--EKPSGP   43 (46)
T ss_dssp             CSSCCCSSSEECSSSCCEESSHHHHHHHH-TTTCC--CCCCSC
T ss_pred             ccCCCCCCCeECCCCCchhCChHHHHHHH-hhcCC--CCCCCC
Confidence            33444445555555555555555555555 44555  555554

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.5e-13  Score=66.64  Aligned_cols=41  Identities=27%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep2_A            5 SSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS   45 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCC
T ss_pred             CCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34444444445445544444444444444444444444443

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3e-13  Score=66.90  Aligned_cols=42  Identities=38%  Similarity=0.463  Sum_probs=30.8

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQ-VIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHH-TTTCC--SCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            455677777777777777777777777777 67777  7777774

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.4e-13  Score=67.22  Aligned_cols=42  Identities=31%  Similarity=0.473  Sum_probs=30.4

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQ-RVHTG--EKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHG-GGGCC--CCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            455667777777777777777777777777 67777  7777774

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3e-13  Score=66.93  Aligned_cols=42  Identities=29%  Similarity=0.417  Sum_probs=29.5

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ-RVHTG--EKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHH-TTTSS--SCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            455666777777777777777777777777 67777  7777774

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.6e-13  Score=66.60  Aligned_cols=39  Identities=33%  Similarity=0.526  Sum_probs=19.8

Q ss_pred             HhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        88 ~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      ++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2eq0_A            5 SSGTGEKPYKCHECGKVFRRNSHLARHQ-LIHTG--EKPSGP   43 (46)
T ss_dssp             CCTTCCCCEECTTTCCEESSHHHHHHHH-TTTCC--CCCSCC
T ss_pred             cCCCCCCCeECCCCCchhCCHHHHHHHH-HHcCC--CCCCCC
Confidence            3444455555555555555555555555 44555  555554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.4e-13  Score=66.67  Aligned_cols=42  Identities=40%  Similarity=0.546  Sum_probs=29.6

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQ-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHH-TTTSS--CCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            455666777777777777777777777777 66777  7777774

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3e-13  Score=66.93  Aligned_cols=42  Identities=33%  Similarity=0.518  Sum_probs=29.8

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQ-RVHTG--EKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHG-GGGTT--CCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHH-HhcCC--CCCCCCC
Confidence            455666777777777777777777777777 66777  7777774

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.3e-13  Score=66.70  Aligned_cols=42  Identities=40%  Similarity=0.546  Sum_probs=28.3

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQ-RTHTG--EKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHH-HTSCS--SSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            445566666777777777777777777776 66776  7777664

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.8e-13  Score=65.64  Aligned_cols=41  Identities=27%  Similarity=0.455  Sum_probs=29.9

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|.
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   42 (42)
T 2yte_A            2 SSGSSGEKPYSCAECKETFSDNNRLVQHQ-KMHTV--KSGPSSG   42 (42)
T ss_dssp             CSSSCSCCSCBCTTTCCBCSSHHHHHHHH-HHTSC--CSSCCCC
T ss_pred             CcCcCCCCCeECCCCCCccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            45667777777777777777777777777 67777  7777774

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.31  E-value=2.1e-13  Score=67.49  Aligned_cols=42  Identities=36%  Similarity=0.488  Sum_probs=23.2

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQ-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHH-HHHTT--SCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            344455555555555555555555555555 55555  5555553

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=3.3e-13  Score=66.10  Aligned_cols=42  Identities=17%  Similarity=0.253  Sum_probs=34.1

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQ-KTHAA--KSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHG-GGGCC--CCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHH-HHcCC--CCCcCCC
Confidence            556777888888888888888888888888 78888  8888885

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.31  E-value=2.7e-12  Score=69.29  Aligned_cols=59  Identities=39%  Similarity=0.732  Sum_probs=52.5

Q ss_pred             ccCCCCceeeCCC--CCCcccCchhHHHHHHhhcCCCCeeccc--ChhhhcCcchHHHhhhhcC
Q psy4407          60 LRPDKTYIFTCFA--CEYHSAKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSKKH  119 (130)
Q Consensus        60 ~~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h  119 (130)
                      ......++|.|..  |++.|.....|..|++.|+++++|.|..  |++.|.....|..|+ ++|
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~-~~H   72 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR-RTH   72 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHT-TTC
T ss_pred             CCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHh-hcC
Confidence            4456678899988  9999999999999999999999999964  999999999999999 665

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.9e-13  Score=66.46  Aligned_cols=40  Identities=33%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2epz_A            4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHR-RIHTG--EKPSGP   43 (46)
T ss_dssp             CSSCCCCCSBCCTTTCCCBSSHHHHHHHH-TTTTT--CCCCSS
T ss_pred             CCCcCCCCCeECCCCCceeCCHHHHHHHH-HHhCC--CCCCCC
Confidence            34445555555555555555555555555 45555  555555

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.9e-13  Score=66.96  Aligned_cols=42  Identities=33%  Similarity=0.463  Sum_probs=31.4

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR-GIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHH-TTTSC--SCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHh-HhcCC--CCCCCCC
Confidence            455677777777777777777777777777 77777  7777774

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.9e-13  Score=66.99  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=25.8

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHK-RVHTG--ERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHH-HHCSS--CCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            344556666666666666666666666666 56666  6666663

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=2.1e-13  Score=67.53  Aligned_cols=40  Identities=30%  Similarity=0.501  Sum_probs=21.0

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2em4_A            4 GSSGTGQRPYECIECGKAFKTKSSLICHR-RSHTG--EKPSGP   43 (46)
T ss_dssp             CCCCCCSSSEECSSSCCEESSHHHHHHHH-HHHSS--SSCCCC
T ss_pred             ccccCCCcCcCCCCCCCccCCHHHHHHHH-HhcCC--CCCCCC
Confidence            34455555555555555555555555555 45555  555555

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.31  E-value=2.9e-13  Score=66.92  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=23.4

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            5 SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             cCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            445555555555555555555555555555555555555543

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.4e-13  Score=66.74  Aligned_cols=42  Identities=33%  Similarity=0.478  Sum_probs=31.1

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHH-SVHSG--ERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHT-TTTTS--CCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHH-HhcCC--CCCCCCC
Confidence            445677777777777777777777777777 67777  7777774

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.31  E-value=2.5e-13  Score=81.42  Aligned_cols=67  Identities=9%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             ccceehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          17 SGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      ..+..+++ .|++++||.|..||+.|.....|..|.       ++|  ++||.|..|++.|.....|..|++.|++.
T Consensus        60 ~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~-------~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           60 SSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHI-------RYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHH-------HHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHH-------HHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            33444444 688999999999999999999999998       888  88999999999999999999999999875

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.5e-13  Score=66.21  Aligned_cols=41  Identities=17%  Similarity=0.129  Sum_probs=20.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|..
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epw_A            5 SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS   45 (46)
T ss_dssp             CCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred             ccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34444445555555555555555555554454444444443

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.5e-13  Score=66.63  Aligned_cols=42  Identities=21%  Similarity=0.301  Sum_probs=23.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            5 SSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            445555555555555555555555555555555555555444

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.8e-13  Score=66.13  Aligned_cols=42  Identities=33%  Similarity=0.513  Sum_probs=25.4

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQ-RVHTG--EKPSGPS   44 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHG-GGGSC--CCCSCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            445556666666666666666666666666 55666  6666653

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4e-13  Score=66.40  Aligned_cols=40  Identities=33%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2eop_A            4 GSSGTGEKPHECRECGKSFSFNSQLIVHQ-RIHTG--ENPSGP   43 (46)
T ss_dssp             CCSCCCCCSCBCTTTCCBCSSHHHHHHHH-TTTTT--SCCSCC
T ss_pred             ccccCCCCCeeCCCCCchhCCHHHHHHHH-HHcCC--CCCCCC
Confidence            34445555555555555555555555555 44555  555555

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.4e-13  Score=66.63  Aligned_cols=42  Identities=21%  Similarity=0.338  Sum_probs=21.0

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            5 SSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             ccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            344445555555555555555555555555555555554443

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.30  E-value=3.1e-13  Score=66.83  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~~~~~C   43 (46)
T 2em0_A            4 GSSGMGEKTWKCRECDMCFSQASSLRLHQ-NVHVG--EKPSGP   43 (46)
T ss_dssp             CCCSCCCCCCCCSSSCCCCSSHHHHHHHG-GGGSS--SSCSCS
T ss_pred             cCccCCCcCeECCCCCcccCCHHHHHHHH-HHcCC--CCCcCC
Confidence            33444455555555555555555555555 44555  555554

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.8e-13  Score=66.14  Aligned_cols=42  Identities=33%  Similarity=0.543  Sum_probs=30.4

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQ-RVHSG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHG-GGSCC--SCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            345667777777777777777777777777 67777  7777774

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=4.1e-13  Score=66.35  Aligned_cols=41  Identities=24%  Similarity=0.176  Sum_probs=19.7

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|..
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en8_A            5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS   45 (46)
T ss_dssp             CCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred             ccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34444444455445544444444444444444444444443

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.1e-13  Score=66.82  Aligned_cols=42  Identities=38%  Similarity=0.500  Sum_probs=26.7

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQ-RIHTG--ENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHH-GGGSS--SCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            445566666666666666666666666666 56666  6666664

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=4.3e-13  Score=66.32  Aligned_cols=41  Identities=24%  Similarity=0.243  Sum_probs=19.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em7_A            5 SSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTC
T ss_pred             CCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34444444444444444444444444444444444444443

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.6e-13  Score=67.07  Aligned_cols=40  Identities=33%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2eow_A            4 GSSGTGEKPYKCNECGKAFRARSSLAIHQ-ATHSG--EKPSGP   43 (46)
T ss_dssp             CCCSCCCCCEECTTSCCEESSHHHHHHHH-HHHCC--CSCSCT
T ss_pred             cCCCCCCCCeeccccCChhcCHHHHHHHH-HHcCC--CCCCCC
Confidence            34445555555555555555555555555 44555  555555

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.6e-13  Score=65.22  Aligned_cols=41  Identities=27%  Similarity=0.468  Sum_probs=35.3

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI-RVHTG--SGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTG-GGTSC--CSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHH-HHhCC--CCCCCC
Confidence            556788888899999999998888999998 88888  899887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.4e-13  Score=66.65  Aligned_cols=40  Identities=28%  Similarity=0.375  Sum_probs=19.2

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      +|+++++|.|.+|++.|.....|..|+++|++++||.|..
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoe_A            6 SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred             CCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4444444444444444444444444444444444444443

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4.7e-13  Score=66.19  Aligned_cols=39  Identities=36%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             HhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        88 ~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      ++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2ytq_A            5 SSGAGEKPYGCSECGKAFSSKSYLIIHM-RTHSG--EKPSGP   43 (46)
T ss_dssp             SCSSCCCSCBCSSSCCBCSCHHHHHHHH-TTTCC--SCSSCC
T ss_pred             cCcCCCCCcCCCccChhhCChHHHHHHH-HHhCC--CCCCCC
Confidence            3444445555555555555555555554 44555  555544

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3e-13  Score=66.89  Aligned_cols=40  Identities=35%  Similarity=0.595  Sum_probs=20.9

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~~~~~C~~C~k~F~~~~~L~~H~-~~H~~--~~~~~C   43 (46)
T 2em3_A            4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQ-KTHTG--EKPSGP   43 (46)
T ss_dssp             CCCCSSCCSEECSSSCCEESSHHHHHHHH-HHHCC--CCCCCS
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHH-HHhCC--CCCCCC
Confidence            34445555555555555555555555555 44555  555555

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.9e-13  Score=66.13  Aligned_cols=42  Identities=31%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            5 SSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            344444445555555555544455555444444444444443

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.29  E-value=3.4e-13  Score=66.73  Aligned_cols=42  Identities=29%  Similarity=0.379  Sum_probs=26.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            5 SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455566666666666666666666666666666666666554

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.8e-13  Score=66.38  Aligned_cols=42  Identities=24%  Similarity=0.265  Sum_probs=27.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455666666666666666666666666666666666666554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.29  E-value=5e-13  Score=66.03  Aligned_cols=42  Identities=24%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            5 SSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            344444555555555555555555555555555555544443

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.4e-13  Score=66.25  Aligned_cols=42  Identities=33%  Similarity=0.461  Sum_probs=32.2

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQ-AIHTG--KKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHH-TTSCC--CCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            456677777788888888888777888887 77777  7888774

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=2.6e-13  Score=67.13  Aligned_cols=42  Identities=31%  Similarity=0.454  Sum_probs=26.3

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHL-RVHTQ--ETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHH-HHHSS--CCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            445566666666666666666666666666 56666  6666663

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6e-13  Score=65.75  Aligned_cols=42  Identities=24%  Similarity=0.252  Sum_probs=21.9

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            344455555555555555555555555555555555555443

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.1e-13  Score=66.38  Aligned_cols=42  Identities=26%  Similarity=0.261  Sum_probs=21.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            5 SSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344455555555555555555555555555555555555443

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.5e-13  Score=66.22  Aligned_cols=41  Identities=34%  Similarity=0.503  Sum_probs=23.4

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQ-RVHTG--EKPSGP   43 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTG-GGGSS--CCSSCS
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHH-HHcCC--CCCCCC
Confidence            344455555555555555555555555555 55555  555555

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.3e-13  Score=66.70  Aligned_cols=42  Identities=26%  Similarity=0.313  Sum_probs=26.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            5 SSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            455566666666666666666666666666666666666554

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.5e-13  Score=66.18  Aligned_cols=40  Identities=33%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C   43 (46)
T 2ytr_A            4 GSSGTGEKPYKCNECGKAFSQTSKLARHQ-RIHTG--EKPSGP   43 (46)
T ss_dssp             SCCCSSCCTTCCTTTCCCCSSHHHHHHHH-TTTTT--CSCCCS
T ss_pred             CcCCCCCcCcCCCCCCCccCCHHHHHHHH-HhcCC--CCCCCC
Confidence            34444555555555555555555555555 44555  555554

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.29  E-value=2.9e-13  Score=66.99  Aligned_cols=42  Identities=26%  Similarity=0.365  Sum_probs=25.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            5 SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455556666666666666666666666666666666665544

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=5.7e-13  Score=65.85  Aligned_cols=42  Identities=26%  Similarity=0.273  Sum_probs=23.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|++.|+++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            445555555555555555555555555555555555555544

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=4.5e-13  Score=64.96  Aligned_cols=41  Identities=24%  Similarity=0.495  Sum_probs=34.1

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL-RIHTG--SGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHT-TTTSC--CSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHH-HhcCC--CCCCCC
Confidence            456778888888888888888888888888 78888  888887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.9e-12  Score=62.75  Aligned_cols=42  Identities=29%  Similarity=0.502  Sum_probs=34.4

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQ-RIHSG--KKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHH-GGGSS--CCCSCSS
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHH-HHhcC--CCCCCCC
Confidence            566778888888888888888888888888 78888  8888874

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.1e-13  Score=66.02  Aligned_cols=40  Identities=38%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C   43 (46)
T 2ysp_A            4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQ-KVHTG--ERPSGP   43 (46)
T ss_dssp             CCCCSSCCSEEETTTTEEESCHHHHHHHH-TTSCS--CCSSCC
T ss_pred             CcCCCCCCCeECCCCCCccCCHHHHHHHH-HhhCC--CCCCCC
Confidence            34445555555555555555555555555 44555  555554

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.3e-12  Score=62.61  Aligned_cols=42  Identities=38%  Similarity=0.542  Sum_probs=35.5

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQ-QIHTG--EKPSGPS   44 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHH-HTTSS--CCSCCSC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            566788888888888888888888888888 78888  8888885

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.8e-12  Score=62.83  Aligned_cols=42  Identities=21%  Similarity=0.303  Sum_probs=29.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            556666777777777777777777777777777777766654

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.1e-13  Score=66.43  Aligned_cols=41  Identities=29%  Similarity=0.411  Sum_probs=22.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            5 SSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            44555555555555555555555555555555555555543

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.7e-13  Score=66.19  Aligned_cols=42  Identities=21%  Similarity=0.239  Sum_probs=24.4

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|..|++.|.....|..|+++|++++||.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            5 SSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             SCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            445555556666666666655666666555555555555544

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.8e-13  Score=67.01  Aligned_cols=40  Identities=33%  Similarity=0.420  Sum_probs=20.5

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2yto_A            4 GSSGTGEKPYKCSDCGKAFTRKSGLHIHQ-QSHTG--ERHSGP   43 (46)
T ss_dssp             CCCCCSCCCEECSSSCCEESSHHHHHHHH-HHHTC--CCBTTT
T ss_pred             ccccCCCCCEECcccCCccCCHhHHHHHH-HHcCC--CCCCCC
Confidence            34444555555555555555555555555 44555  555555

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.6e-13  Score=66.57  Aligned_cols=42  Identities=21%  Similarity=0.348  Sum_probs=27.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            456666666666666666666666666666666666666554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.9e-12  Score=62.40  Aligned_cols=42  Identities=24%  Similarity=0.352  Sum_probs=27.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            5 SSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             cccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            456666666666666666666666666666666666666654

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.28  E-value=5.7e-13  Score=64.53  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=28.6

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~-~~H~~--~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQ-RSCSQ--SGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHH-HHTTC--CCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHh-hhcCC--CCCCCC
Confidence            345566677777777777777777777777 66777  777766

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3e-13  Score=66.91  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=25.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            5 SSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455566666666666666666666666666666666666544

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.28  E-value=4.5e-12  Score=62.53  Aligned_cols=42  Identities=33%  Similarity=0.442  Sum_probs=34.9

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQ-KIHTG--EKPSGPS   44 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHH-TGGGC--CCCCSSS
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHH-HhcCC--CCCCCCC
Confidence            566788888888888888888888888888 78888  8888885

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.1e-13  Score=66.82  Aligned_cols=39  Identities=31%  Similarity=0.429  Sum_probs=19.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C   43 (46)
T 2eor_A            5 SSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP   43 (46)
T ss_dssp             SSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSS
T ss_pred             cCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCC
Confidence            344445555555555555555555555555555555544

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.3e-12  Score=62.56  Aligned_cols=42  Identities=29%  Similarity=0.423  Sum_probs=36.4

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQ-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHH-HHHSC--CCTTSSS
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            567788889999999999999999999998 88888  8999885

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.28  E-value=3.8e-13  Score=68.87  Aligned_cols=51  Identities=16%  Similarity=0.292  Sum_probs=38.6

Q ss_pred             CcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCcc
Q psy4407          75 YHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFF  128 (130)
Q Consensus        75 ~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~  128 (130)
                      +.|.....|..|++.|+++++|.|..|++.|.....|..|+ ++|+|  |+||.
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHL-ELRHF--AKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHH-HHHTT--TSCCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHH-HHhcc--CCCCC
Confidence            44566666777777788888888888888888888888888 77888  88774

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.3e-13  Score=66.32  Aligned_cols=42  Identities=26%  Similarity=0.425  Sum_probs=39.6

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHR-RIHTG--YRPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHH-HHHTC--CCSSCSS
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHH-HHcCC--CCCCCCC
Confidence            667899999999999999999999999999 89999  9999995

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.8e-13  Score=66.49  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=27.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|..|++.|.....|..|++.|++++||.|.+|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            5 SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             ccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            456666666666666666666666666666666666666554

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.7e-12  Score=62.46  Aligned_cols=42  Identities=31%  Similarity=0.484  Sum_probs=35.0

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQ-RTHAG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHH-HHHTT--SCCSCSS
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHH-HHcCC--CCCCCCC
Confidence            566788888888888888888888888888 77888  8888885

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.27  E-value=7.8e-13  Score=65.38  Aligned_cols=42  Identities=24%  Similarity=0.259  Sum_probs=24.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455555566666666666666666666656665556655544

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.3e-12  Score=62.59  Aligned_cols=42  Identities=26%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            5 SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            556666667777777777777777777777766677766654

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5.1e-12  Score=62.33  Aligned_cols=42  Identities=21%  Similarity=0.244  Sum_probs=36.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            5 SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            678888889999999999999999999989998899988765

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5.6e-12  Score=62.14  Aligned_cols=42  Identities=31%  Similarity=0.336  Sum_probs=35.9

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQ-RTHVD--DKHSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHH-HHCCS--CCCSCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            566788888899988999998888898888 78888  8888885

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.4e-12  Score=62.55  Aligned_cols=42  Identities=33%  Similarity=0.490  Sum_probs=35.1

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHW-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHH-HHHSS--SSCSSCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHH-HHHCC--CCCCCCC
Confidence            556788888888888888888888888888 78888  8888885

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.3e-12  Score=62.59  Aligned_cols=42  Identities=26%  Similarity=0.286  Sum_probs=34.5

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            5 SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            667788888888888888888888888888888888888766

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.27  E-value=3.8e-12  Score=62.75  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            567777778888888888888888888878888788877765

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.9e-12  Score=62.38  Aligned_cols=42  Identities=24%  Similarity=0.229  Sum_probs=28.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            5 SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            556666667777777777777777777777776677766654

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=4.2e-12  Score=62.66  Aligned_cols=42  Identities=26%  Similarity=0.311  Sum_probs=34.1

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQ-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHH-TTTSC--SCCSSCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            556778888888888888888888888888 77888  8888875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=7.9e-13  Score=65.55  Aligned_cols=40  Identities=28%  Similarity=0.517  Sum_probs=22.0

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhh-cCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSK-KHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~-~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ + +|++  ++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~~H~~--~k~~~C   44 (47)
T 2epx_A            4 GSSGTGKKPYECIECGKAFIQNTSLIRHW-RYYHTG--EKPSGP   44 (47)
T ss_dssp             CCCCCCCCSBCCSSSCCCBSSHHHHHHHH-TTTTTT--SCSSSC
T ss_pred             ccccCCCCCEECCccCchhCChHHHHHHh-HhhcCC--CCCCCC
Confidence            34455555555555555555555555555 3 5555  555555

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.27  E-value=5.7e-12  Score=62.17  Aligned_cols=42  Identities=38%  Similarity=0.539  Sum_probs=35.2

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHH-KLHTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHH-HHHSC--CSSCSCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            566788888888888888888888888888 77888  8888885

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=4.1e-13  Score=66.40  Aligned_cols=39  Identities=31%  Similarity=0.456  Sum_probs=19.1

Q ss_pred             HhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        88 ~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      ++|+++++|.|..|++.|.....|..|+ ++|++  ++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C   43 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQ-RIHTG--EKPSGP   43 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHH-HHHTS--SCCCSC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHH-HHcCC--CCCCCC
Confidence            3444444455555555555444555554 44444  455544

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5.9e-12  Score=62.06  Aligned_cols=42  Identities=29%  Similarity=0.456  Sum_probs=34.5

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQ-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHH-GGGCC--CSCCSSC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHH-HhcCC--CCCCCCC
Confidence            566788888888888888888888888888 78888  8888885

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=5.1e-12  Score=61.72  Aligned_cols=42  Identities=38%  Similarity=0.532  Sum_probs=35.2

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   42 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQ-QTHAE--EKPSGPS   42 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHH-HHHTS--SCSCSCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            456788888888888888888888888888 78888  8888885

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.3e-13  Score=66.72  Aligned_cols=42  Identities=33%  Similarity=0.366  Sum_probs=39.7

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQ-VIHTG--EKPSGPS   44 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHH-HHHHC--CSCCSCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            677899999999999999999999999999 89999  9999995

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=3.3e-13  Score=66.75  Aligned_cols=42  Identities=38%  Similarity=0.566  Sum_probs=39.7

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQ-KIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHH-HHHHC--SSCSSSC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHH-HhcCC--CCCCCCC
Confidence            667899999999999999999999999999 89999  9999995

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.27  E-value=4.8e-12  Score=62.45  Aligned_cols=42  Identities=31%  Similarity=0.494  Sum_probs=35.5

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQ-RVHTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHH-HHHSS--CCCSSCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            566788888888888888888888888888 78888  8888885

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=5.2e-12  Score=62.30  Aligned_cols=42  Identities=26%  Similarity=0.333  Sum_probs=34.9

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            5 SSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             cCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            567788888888888888888888888888888888888766

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.2e-12  Score=62.68  Aligned_cols=42  Identities=26%  Similarity=0.337  Sum_probs=33.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            5 SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            567777888888888888888888888888888888887765

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.2e-12  Score=62.65  Aligned_cols=42  Identities=26%  Similarity=0.317  Sum_probs=33.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|..|++.|.....|..|+++|++++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            5 SSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             cCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            567777788888888888888888888888888888887765

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.6e-12  Score=62.46  Aligned_cols=42  Identities=31%  Similarity=0.397  Sum_probs=35.6

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHE-RLHSG--EKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHH-HHCCS--SSCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHH-HhcCC--CCCCCCC
Confidence            566788888888888888888888888888 78888  8888885

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.4e-12  Score=62.20  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=27.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            455666666666666666666666666666666666666554

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=3.2e-13  Score=66.82  Aligned_cols=42  Identities=29%  Similarity=0.474  Sum_probs=39.6

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL-KRHFR--EKSSGPS   44 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHH-HHHHS--TTSSCCS
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHH-HHHcC--CCCCCCC
Confidence            677899999999999999999999999999 88999  9999995

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=5.6e-13  Score=65.89  Aligned_cols=42  Identities=17%  Similarity=0.096  Sum_probs=29.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            5 SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            556666777777777777777777777777777777776654

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=5.4e-12  Score=62.19  Aligned_cols=42  Identities=26%  Similarity=0.206  Sum_probs=34.9

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQ-RVHMG--EKCSGPS   44 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHH-TTTCC--SCSSCCS
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            566788888888888888888888888888 78888  8888885

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.1e-13  Score=65.98  Aligned_cols=42  Identities=36%  Similarity=0.362  Sum_probs=39.6

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQ-KCHTG--ERHSGPS   44 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHH-HHHSC--CSSCCSC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHH-HhcCC--CCCCCCC
Confidence            677899999999999999999999999999 89999  9999995

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=7.6e-12  Score=61.68  Aligned_cols=42  Identities=19%  Similarity=0.100  Sum_probs=34.4

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQ-VLHMG--QKNSGPS   44 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHH-HHHSC--CSCCCTT
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            556778888888888888888888888888 77888  8888884

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.4e-12  Score=62.23  Aligned_cols=42  Identities=36%  Similarity=0.523  Sum_probs=35.5

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHS-MVHTA--EKPSGPS   44 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHH-HHTTC--CCSSSCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            566788888888888888888888888888 78888  8888885

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.26  E-value=4.4e-12  Score=62.55  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            5 SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            567778888888888888888888888888888888888765

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.26  E-value=6.9e-12  Score=61.88  Aligned_cols=42  Identities=29%  Similarity=0.399  Sum_probs=34.6

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQ-RMHTR--EKPSGPS   44 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHH-GGGCC--SSCCSCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            456778888888888888888888888888 78888  8888885

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.26  E-value=5.5e-12  Score=62.17  Aligned_cols=42  Identities=36%  Similarity=0.438  Sum_probs=33.9

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQ-RVHSG--EKPSGPS   44 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHG-GGGTS--CCCCSTT
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHH-HHhCC--CCCCCCC
Confidence            566778888888888888888888888888 77888  8888874

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.5e-13  Score=65.91  Aligned_cols=42  Identities=26%  Similarity=0.346  Sum_probs=25.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|..|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            5 SSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            455566666666666666666666666666666666666544

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.1e-12  Score=62.33  Aligned_cols=42  Identities=31%  Similarity=0.461  Sum_probs=34.5

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR-RVHTG--GKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHT-HHHHS--CCCSCSC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHH-HhcCC--CCCCCCC
Confidence            556778888888888888888888888888 78888  8888885

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=7.1e-12  Score=61.79  Aligned_cols=42  Identities=31%  Similarity=0.411  Sum_probs=34.9

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQ-RSHSG--EKPSGPS   44 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHH-HHSCC--SSCCSSC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHH-HHhCC--CCCCCCC
Confidence            456788888888888888888888888888 78888  8888885

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.5e-12  Score=62.17  Aligned_cols=42  Identities=24%  Similarity=0.212  Sum_probs=34.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|..|++.|.....|..|+++|++++||.|..|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            5 SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             cccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            567778888888888888888888888888888888888765

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=4.9e-12  Score=62.34  Aligned_cols=42  Identities=31%  Similarity=0.440  Sum_probs=34.6

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQ-RIHTG--VKPSGPS   44 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHH-GGGSC--CCSCSSC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            566788888888888888888888888888 78888  8888885

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.6e-12  Score=62.22  Aligned_cols=42  Identities=26%  Similarity=0.301  Sum_probs=32.0

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ-RVHMG--EKTSGPS   44 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHG-GGGGS--CCCCCSC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHH-HhcCC--CCCCCCC
Confidence            455677777888888888888777888887 77777  7888774

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.4e-13  Score=65.37  Aligned_cols=40  Identities=25%  Similarity=0.444  Sum_probs=25.0

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKCETCGARFVQVAHLRAHV-LIHTG--SGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEECTTTCCEESSHHHHHHHT-HHHHS--CCSSCC
T ss_pred             CcccCCCCCEeCCCcChhhCCHHHHHHHH-HHcCC--CCCCCC
Confidence            44556666666666666666666666666 56666  666665

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=5.9e-13  Score=65.20  Aligned_cols=41  Identities=17%  Similarity=0.114  Sum_probs=26.7

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      +++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (44)
T 2eou_A            4 GSSGAAKTTSECQECGKIFRHSSLLIEHQ-ALHAG--ESGPSSG   44 (44)
T ss_dssp             SCSCSSSCCCCCTTTCCCCSSHHHHHHHH-HHHTT--SCCCCCC
T ss_pred             CCCCCCCcCeECCCCCcccCCHHHHHHHH-HHHCC--CCCCCCC
Confidence            44566666666666666666666666666 66666  6666664

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=6.3e-12  Score=62.00  Aligned_cols=42  Identities=31%  Similarity=0.392  Sum_probs=34.2

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHH-MVHTG--EKPSGPS   44 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHG-GGGTT--CCCSSTT
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            556778888888888888888888888888 77888  8888875

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=6.5e-12  Score=61.97  Aligned_cols=42  Identities=24%  Similarity=0.315  Sum_probs=34.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            5 SSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             cCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            667788888888888888888888888888888888888766

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5e-12  Score=62.31  Aligned_cols=42  Identities=26%  Similarity=0.331  Sum_probs=33.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            5 SSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             cCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            567778888888888888888888888888888888888765

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=5.4e-12  Score=62.25  Aligned_cols=42  Identities=29%  Similarity=0.369  Sum_probs=31.7

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            5 SSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            566777777777777777777777777777777777777665

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=7.5e-12  Score=61.74  Aligned_cols=42  Identities=24%  Similarity=0.261  Sum_probs=31.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            566777777777777777777777777777777777777665

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=6.9e-13  Score=64.92  Aligned_cols=41  Identities=22%  Similarity=0.255  Sum_probs=31.3

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~-~~H~~--~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQ-KIHTR--KSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTH-HHHCC--CCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHH-HHhCC--CCCCCC
Confidence            456677777777877888777777777777 77777  777777

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.2e-13  Score=66.36  Aligned_cols=40  Identities=35%  Similarity=0.529  Sum_probs=19.5

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~~~~~C   43 (46)
T 2en3_A            4 GSSGTGEKPFQCKECGMNFSWSCSLFKHL-RSHER--TDPSGP   43 (46)
T ss_dssp             CCCSCCCCSEECSSSCCEESSSHHHHHHH-HHHHH--SCCSSC
T ss_pred             ccccCCCCCeeCcccChhhCCHHHHHHHH-HHhCC--CCCCCC
Confidence            33444444555555555555545555554 44444  455544

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=7.7e-12  Score=61.66  Aligned_cols=42  Identities=26%  Similarity=0.342  Sum_probs=34.9

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            5 SSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            667788888888888888888888888888888888888765

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=6.6e-12  Score=61.92  Aligned_cols=42  Identities=33%  Similarity=0.498  Sum_probs=34.8

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQ-RTHTG--EKPSGPS   44 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHH-HHHSS--CCCSSSC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHH-HHcCC--CCCCCCC
Confidence            556788888888888888888888888888 77888  8888885

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=4.6e-12  Score=62.49  Aligned_cols=42  Identities=31%  Similarity=0.404  Sum_probs=27.4

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            5 SSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            455666666666666666666666666666666666666654

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=8.3e-12  Score=61.53  Aligned_cols=42  Identities=26%  Similarity=0.324  Sum_probs=34.3

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|.+|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            5 SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            667788888888888888888888888888888888888654

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=5.2e-13  Score=66.05  Aligned_cols=42  Identities=21%  Similarity=0.320  Sum_probs=28.9

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            456666677777777777777777777777777777766654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.23  E-value=3.5e-12  Score=70.74  Aligned_cols=54  Identities=28%  Similarity=0.558  Sum_probs=51.0

Q ss_pred             eeeC--CCCCCcccCchhHHHHHHhhcCCCCeeccc--ChhhhcCcchHHHhhhhcCCC
Q psy4407          67 IFTC--FACEYHSAKRSHIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        67 ~~~C--~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ||.|  ..|++.|.....|..|++.|+++++|.|..  |++.|.....|..|+ ++|++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHH-HHHHS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHH-HHhCC
Confidence            5889  999999999999999999999999999988  999999999999999 77775

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.7e-13  Score=66.57  Aligned_cols=40  Identities=28%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            5 SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             SCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             cCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3445555555555555555555555555555555555443

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=6.2e-12  Score=62.01  Aligned_cols=42  Identities=19%  Similarity=0.261  Sum_probs=33.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            5 SSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             cCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            567777788888888888888888888888888888887765

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.22  E-value=6.9e-12  Score=61.58  Aligned_cols=43  Identities=16%  Similarity=0.281  Sum_probs=35.4

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccCh
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCE  102 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~  102 (130)
                      ..|+++++|.|.+|++.|.....|..|+++|+++++|.|..||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4577788888888888888888888888888888888888775

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=8.2e-12  Score=61.63  Aligned_cols=42  Identities=31%  Similarity=0.484  Sum_probs=34.5

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQ-RLHTG--QRPSGPS   44 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHHH-HHHHS--CCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            456778888888888888888888888888 77888  8888885

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=5.2e-12  Score=60.76  Aligned_cols=38  Identities=24%  Similarity=0.424  Sum_probs=29.0

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +|+++++|.|..|++.|.....|..|+ ++|++  ++||+|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHE-RIHTG--SGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHG-GGCCC--CSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHH-HHhCC--CCCcCC
Confidence            466777777777777777777777777 77777  777776

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=2e-12  Score=63.58  Aligned_cols=40  Identities=35%  Similarity=0.512  Sum_probs=28.1

Q ss_pred             HhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        88 ~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      ++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQ-RIHTG--EKSGPSS   44 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHH-TTTSS--CCCCCSC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHH-HHhCC--CCCCCCC
Confidence            3466677777777777777777777777 66777  7777774

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=8.8e-13  Score=65.18  Aligned_cols=42  Identities=26%  Similarity=0.397  Sum_probs=39.3

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~~~~~C~   44 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQ-RVHTG--EKLSGPS   44 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHH-HHHHC--CCCCCSC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHH-HHHcC--CCCCCCC
Confidence            567889999999999999999999999999 89999  9999995

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.21  E-value=6.1e-12  Score=62.68  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=32.7

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChh
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEY  103 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~  103 (130)
                      .+.++++|.|.+|++.|.....|..|+++|+++++|.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            4566777888888888887778888877787777888877764

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.8e-11  Score=60.29  Aligned_cols=42  Identities=31%  Similarity=0.491  Sum_probs=37.1

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHL-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHH-HHHCC--CCSSCSS
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            566788899999999999999999999999 88999  9999985

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.2e-11  Score=60.99  Aligned_cols=42  Identities=26%  Similarity=0.266  Sum_probs=22.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            344555555555555555555555555555555555555443

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.3e-11  Score=60.99  Aligned_cols=42  Identities=24%  Similarity=0.329  Sum_probs=34.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHH-hhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIR-QHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|++ +|++++||.|..|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            5 SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            67778888888888888888888888888 8888888888765

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.5e-12  Score=62.91  Aligned_cols=41  Identities=27%  Similarity=0.294  Sum_probs=26.5

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHE-RTHAG--VSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHH-GGGSS--CSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHH-hHhcC--CCCCCC
Confidence            445566666666666666666666666666 56666  666665

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.19  E-value=4.7e-12  Score=66.64  Aligned_cols=49  Identities=12%  Similarity=0.247  Sum_probs=31.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchH
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNL  111 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l  111 (130)
                      ++|.+++||.|..||+.|.....|.   +.|+++++|.|..|++.|.....+
T Consensus         7 ~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            7 RDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             SSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             HHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            5666666666666666666555554   566666777777777766655433

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.8e-12  Score=62.80  Aligned_cols=41  Identities=37%  Similarity=0.489  Sum_probs=38.2

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      +++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQ-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHH-TTTSS--SCCCSCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHH-HHhCC--CCCCCCC
Confidence            35788999999999999999999999999 89999  9999995

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=7e-12  Score=61.85  Aligned_cols=42  Identities=19%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.+|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            566777777777777777777777777777777777777665

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=3.1e-12  Score=63.18  Aligned_cols=39  Identities=28%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            344455555555555555555555555555555555544

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=5.2e-12  Score=61.50  Aligned_cols=38  Identities=18%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      +|+++++|.|..|++.|.....|..|+++|+++++|.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            34444455555555555555555555555555444444

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.17  E-value=1.5e-11  Score=62.80  Aligned_cols=52  Identities=13%  Similarity=0.096  Sum_probs=45.2

Q ss_pred             cccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCee
Q psy4407          39 YEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFS   97 (130)
Q Consensus        39 ~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~   97 (130)
                      ++.|.....|..|.       ..|.++++|.|.+|++.|.....|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~-------~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPR-------SRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCH-------HHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHH-------HhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            46677778888888       88899999999999999999999999999999988863

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.17  E-value=3.1e-11  Score=59.46  Aligned_cols=41  Identities=29%  Similarity=0.352  Sum_probs=36.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            5 SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            67888999999999999999999999999999999998864

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.17  E-value=8.9e-12  Score=63.68  Aligned_cols=48  Identities=6%  Similarity=-0.002  Sum_probs=44.1

Q ss_pred             hhcccCcceecccccccccCccccccccCCCCCCcc-cCCCCceeeCCCCCCcccC
Q psy4407          25 DFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKL-RPDKTYIFTCFACEYHSAK   79 (130)
Q Consensus        25 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~-~h~~~~~~~C~~C~~~f~~   79 (130)
                      ..|+++++|.|..|++.|.....|..|+       . +|.++++|.|.+|++.|.+
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~-------~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHI-------KQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHH-------HHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHH-------HHhcCCCCCccCCCCCCCCCC
Confidence            3578999999999999999999999996       6 8999999999999999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.7e-11  Score=59.13  Aligned_cols=41  Identities=24%  Similarity=0.425  Sum_probs=36.5

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            5 SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            67888999999999999999999999999999999998864

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.8e-11  Score=59.04  Aligned_cols=41  Identities=24%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            5 SSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            67888999999999999999999999999999999998863

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=3.6e-11  Score=59.20  Aligned_cols=41  Identities=27%  Similarity=0.355  Sum_probs=36.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            5 SSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             cccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            67888999999999999999999999999999999998863

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=3.4e-11  Score=59.31  Aligned_cols=41  Identities=29%  Similarity=0.365  Sum_probs=34.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            5 SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            67788888888888888888888888888888888888753

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.15  E-value=4.5e-11  Score=57.64  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=34.9

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            5678888999999999999999999999999999998873

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=3.3e-11  Score=58.55  Aligned_cols=40  Identities=20%  Similarity=0.372  Sum_probs=36.3

Q ss_pred             HhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        88 ~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      +.|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHT-LQTHS--DKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHH-HHHTC--TTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHH-HhhCC--CCCccCC
Confidence            3578899999999999999999999999 88999  9999995

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=4.1e-11  Score=58.95  Aligned_cols=42  Identities=33%  Similarity=0.475  Sum_probs=38.3

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~--~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQ-RIHTG--EKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHH-HHHHS--CCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHH-HhcCC--CCCCCCC
Confidence            667889999999999999999999999999 88999  9999995

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=4.9e-11  Score=58.68  Aligned_cols=41  Identities=24%  Similarity=0.325  Sum_probs=35.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|..
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            5 SSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             cccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            67888888999999999998899999988898888888853

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.2e-11  Score=58.88  Aligned_cols=41  Identities=29%  Similarity=0.380  Sum_probs=34.7

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|..|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            67788888888888888888888888888888888888753

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=5.4e-11  Score=57.98  Aligned_cols=40  Identities=20%  Similarity=0.246  Sum_probs=35.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.+++||.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            5 SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             cccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            6788889999999999999999999999999998988873

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.8e-11  Score=59.10  Aligned_cols=41  Identities=27%  Similarity=0.328  Sum_probs=33.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|..|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            5 SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             cCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            56777888888888888888888888888888888887753

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=4.2e-11  Score=58.96  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=36.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            5 SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            67888899999999999999999999999999999998863

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.4e-11  Score=58.86  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=33.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            5 SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            6677888888888888888888888888888888888875

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4e-11  Score=59.06  Aligned_cols=41  Identities=32%  Similarity=0.432  Sum_probs=33.0

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|+++++|.|..|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            5 SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            56777888888888888888888888888888888887753

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.8e-11  Score=58.73  Aligned_cols=41  Identities=20%  Similarity=0.267  Sum_probs=36.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|..
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             cccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            67888999999999999999999999999999999998863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.5e-11  Score=58.85  Aligned_cols=41  Identities=29%  Similarity=0.400  Sum_probs=33.7

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            5 SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            56778888888888888888888888888888888888753

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.6e-11  Score=58.76  Aligned_cols=41  Identities=27%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|+++++|.|..|++.|.....|..|+++|++++||.|.+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            67788888889889988888888999988888888888853

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=4.6e-11  Score=58.74  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=31.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            5677778888888888888888888888888888888775

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=6.5e-11  Score=57.61  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=35.3

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|+++++|.|..|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            5 SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             SCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             cCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            6788889999999999999999999999999999998873

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=5.9e-11  Score=58.43  Aligned_cols=41  Identities=29%  Similarity=0.408  Sum_probs=36.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeeccc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLL  100 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~  100 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|..
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            67888999999999999999999999999999999998863

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.12  E-value=7.4e-12  Score=65.85  Aligned_cols=54  Identities=13%  Similarity=0.181  Sum_probs=45.9

Q ss_pred             ceehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhH
Q psy4407          19 LKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHI   83 (130)
Q Consensus        19 ~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l   83 (130)
                      |..| +++|++++||.|+.||+.|.....|.          ..|.+++||.|..||+.|....++
T Consensus         2 L~~h-~~~H~~~k~~~C~~C~k~F~~~~~l~----------~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETD-ERDSTNRASFKCPVCSSTFTDLEANQ----------LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCC-SSSCCSSSEEECSSSCCEEEHHHHHH----------HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhhH-HHHcCCCCCccCCCCCchhccHHHhH----------hhcCCCCCEECCCCCCccccCccc
Confidence            4556 58999999999999999999888775          468899999999999999866543

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=5.8e-11  Score=58.38  Aligned_cols=40  Identities=28%  Similarity=0.407  Sum_probs=33.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            5 SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             cCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            6777888888888888888888888888888888888875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.1e-11  Score=58.96  Aligned_cols=40  Identities=28%  Similarity=0.375  Sum_probs=31.7

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|+++++|.|..|++.|.....|..|+++|++++||.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            5 SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5677777888888888888888888888888888888775

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=4.3e-11  Score=57.43  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=34.0

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            567888899999999999999999999999998888876

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=7e-11  Score=56.90  Aligned_cols=39  Identities=15%  Similarity=0.258  Sum_probs=34.8

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             cCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            568888999999999999999999999999999999877

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.2e-11  Score=58.61  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=35.7

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            5 SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6788889999999999999999999999999999999885

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.5e-11  Score=58.49  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=33.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|..|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            5 SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6677888888888888888888888888888888888775

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=6e-11  Score=58.43  Aligned_cols=41  Identities=27%  Similarity=0.306  Sum_probs=36.8

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      ++.|+++++|.|..|++.|.....|..|+ ++|++  ++||+|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2eom_A            4 GSSGHGERGHRCSDCGKFFLQASNFIQHR-RIHTG--EKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCCSSSCCCCSSHHHHHHHH-HHHSS--CCCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCeeCChHHHHHHH-HHhCC--CCCCCCC
Confidence            35688899999999999999999999999 88999  9999995

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.3e-11  Score=58.89  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=32.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            5 SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             cCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            5677788888888888888888888888888888888775

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=7.4e-11  Score=58.47  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=23.8

Q ss_pred             ccCCCCceeeCC--CCCCcccCchhHHHHHHhhcCCCCeecccC
Q psy4407          60 LRPDKTYIFTCF--ACEYHSAKRSHIKEHIRQHTGEKPFSCLLC  101 (130)
Q Consensus        60 ~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C  101 (130)
                      ++|+++++|.|.  .|++.|.....|..|+++|+++++|.|..|
T Consensus         5 ~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            5 SSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            345555555555  555555555555555555555555555544

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.10  E-value=8.1e-11  Score=56.67  Aligned_cols=39  Identities=18%  Similarity=0.220  Sum_probs=34.4

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         4 ~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            4 GSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             SCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             ccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            577888899999999999999999999999999998876

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=7.3e-11  Score=57.48  Aligned_cols=40  Identities=18%  Similarity=0.265  Sum_probs=33.5

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            5 SSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             SCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            6778888888888888888888888888888888888773

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.1e-11  Score=58.38  Aligned_cols=40  Identities=25%  Similarity=0.318  Sum_probs=34.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            5678888888888888888888888888888888888875

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=6.3e-11  Score=57.66  Aligned_cols=40  Identities=25%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            5 SSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             cCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            5677888888888888888888888888888888888773

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=6.1e-11  Score=57.17  Aligned_cols=39  Identities=23%  Similarity=0.395  Sum_probs=35.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            4 GSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             cccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            678889999999999999999999999999999999876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.4e-12  Score=62.27  Aligned_cols=41  Identities=32%  Similarity=0.430  Sum_probs=38.1

Q ss_pred             HHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          87 IRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        87 ~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      +++|+++++|.|.+|++.|.....|..|+ ++|++  ++||+|+
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHW-ITHTR--EKPSGPS   44 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHH-THHHH--CCCCSCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHH-HHcCC--CCCCCCC
Confidence            35688999999999999999999999999 89999  9999995

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2e-11  Score=60.63  Aligned_cols=41  Identities=32%  Similarity=0.592  Sum_probs=38.0

Q ss_pred             HHhhcCCCCeecc--cChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          87 IRQHTGEKPFSCL--LCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        87 ~~~h~~~k~~~C~--~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      .++|+++++|.|.  .|++.|.....|..|+ ++|++  ++||+|+
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   46 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHSG--VKPSGPS   46 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHH-TTSCC--CCSCSSC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            4578899999998  8999999999999999 89999  9999995

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.6e-11  Score=58.84  Aligned_cols=40  Identities=23%  Similarity=0.338  Sum_probs=31.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            5 SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            5677777788888888888888888887778777777775

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.09  E-value=3.9e-11  Score=63.77  Aligned_cols=40  Identities=15%  Similarity=0.176  Sum_probs=24.4

Q ss_pred             cCCCCceeeCCC--CCCcccCchhHHHHH-HhhcCCCCeeccc
Q psy4407          61 RPDKTYIFTCFA--CEYHSAKRSHIKEHI-RQHTGEKPFSCLL  100 (130)
Q Consensus        61 ~h~~~~~~~C~~--C~~~f~~~~~l~~h~-~~h~~~k~~~C~~  100 (130)
                      ..++++||.|..  |++.|....+|..|+ ++|++++|+-|.+
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            345666666643  666666666666665 4566666665543

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.7e-11  Score=58.46  Aligned_cols=42  Identities=29%  Similarity=0.471  Sum_probs=37.9

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|.+|++.|.....|..|+ ++|++  ++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHL-RLHSR--EKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHH-HHHHH--TTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHH-HHhCC--CCCCCCC
Confidence            567788999999999999999999999999 88999  9999995

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=8e-11  Score=57.94  Aligned_cols=40  Identities=23%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5677778888888888888888888888888888888775

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.4e-11  Score=57.65  Aligned_cols=39  Identities=26%  Similarity=0.372  Sum_probs=24.4

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             cccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            455566666666666666666666666666666666654

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.2e-11  Score=57.70  Aligned_cols=40  Identities=15%  Similarity=0.294  Sum_probs=31.5

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            5 SSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             cccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            5677778888888888888888888888888888887763

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.08  E-value=2.2e-11  Score=65.64  Aligned_cols=59  Identities=19%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             hhcccCcceeccc--ccccccCccccccccCCCCCCcccCCCCceeeCCC--CCCcccCchhHHHHHHhh
Q psy4407          25 DFRFETEMLTCKY--CYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFA--CEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        25 ~~~~~~~~~~C~~--C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~h   90 (130)
                      ......++|.|..  |++.|.....|..|.       ..|.++++|.|..  |++.|.....|..|+++|
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~-------~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHT-------RTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSHHHHHHHH-------HHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCccccCceeCCCCCCccccCCHHHHHHHH-------HhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3466788999998  999999999999998       8999999999965  999999999999998765

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.1e-10  Score=57.45  Aligned_cols=40  Identities=25%  Similarity=0.260  Sum_probs=25.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcC-CCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTG-EKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~-~k~~~C~   99 (130)
                      ++|.++++|.|..|++.|.....|..|+++|++ +++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             cccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            455566666666666666666666666666666 6666654

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=7.8e-11  Score=57.93  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=36.7

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6788999999999999999999999999999999999885

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=8.7e-11  Score=57.73  Aligned_cols=40  Identities=25%  Similarity=0.321  Sum_probs=31.0

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      ++|.++++|.|..|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5677777788888888888778888888788777777775

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.2e-10  Score=56.69  Aligned_cols=40  Identities=23%  Similarity=0.155  Sum_probs=36.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      .+|.++++|.|.+|++.|.....|..|+++|+++++|.|.
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            6788899999999999999999999999999999999874

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=3.5e-11  Score=59.26  Aligned_cols=43  Identities=26%  Similarity=0.219  Sum_probs=38.1

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      |+++|+++++|.|..|++.|.....|..|+ ++|++. ++||+|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~-~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHE-RIHTRG-VKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHH-TTCCSC-CTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHH-HHcCCC-CCCCCCC
Confidence            567899999999999999999999999999 888741 5899996

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=7.2e-11  Score=56.93  Aligned_cols=39  Identities=26%  Similarity=0.371  Sum_probs=30.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            4 GSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             cccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            567777778888888888888888888877877777765

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=1.9e-10  Score=56.00  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=34.4

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ++|+++++|.|.+|++.|.....|..|+++|++++||.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            5 SSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             cccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            678888899999999999999999999999999888875

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=8.3e-11  Score=57.28  Aligned_cols=39  Identities=18%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      ++|.++++|.|.+|++.|.....|..|+++|+++++|.|
T Consensus         5 ~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             cCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            567778888888888888888888888888888888776

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=8.8e-11  Score=64.08  Aligned_cols=65  Identities=15%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             cccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          46 AEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        46 ~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ..|..|.       .++.+++++.|..|+..|. ...|..|+ .+.+++++.|..|++.|. ...|..|+ .+|.+
T Consensus         3 ~~L~~H~-------~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~-~~c~~   67 (75)
T 2d9k_A            3 SGSSGHE-------ETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHP-EVCGR   67 (75)
T ss_dssp             CCCSCCC-------CCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHH-HHBTT
T ss_pred             hHHHhhC-------cccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHH-HHccC
Confidence            4566776       6677888888888888884 78888888 788888888888888766 57888888 77777

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.04  E-value=4.5e-11  Score=58.58  Aligned_cols=39  Identities=26%  Similarity=0.531  Sum_probs=36.9

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      .|+++++|.|.+|++.|.....|..|+ ++|++  ++||.|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~--~~~~~C~   42 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDG--SVGKSGP   42 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHH-HHHSC--CCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHH-HHccC--CCCCCCc
Confidence            578999999999999999999999999 89999  9999985

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.03  E-value=1.2e-10  Score=55.23  Aligned_cols=36  Identities=17%  Similarity=0.371  Sum_probs=22.2

Q ss_pred             cCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          91 TGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        91 ~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +++++|.|..|++.|.....|..|+ ++|++  ++||.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHM-NVHRR--DRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHH-HTTCC--SCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHH-HHcCC--Ccccee
Confidence            4556666666666666666666666 56666  666654

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.03  E-value=1.3e-10  Score=57.67  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=36.3

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      .++++++|.|.+|++.|.....|..|+ ++|++  ++||.|+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~--~k~~~C~   44 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHK-LSHSG--EKPYSSG   44 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHG-GGSCS--CCCCCSC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHH-HhcCC--CCCccCC
Confidence            367789999999999999999999999 99999  9999995

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=5.2e-11  Score=66.96  Aligned_cols=65  Identities=14%  Similarity=0.174  Sum_probs=51.3

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCC-----CCCccC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSY-----EDPFFV  129 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~-----e~~~~C  129 (130)
                      .+|+++++|.|.+|++.|.....|..|+++|++++||.|..+.    ....|..|. ++|.|+-     |.||.|
T Consensus        18 ~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~   87 (88)
T 1x6f_A           18 GPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQ-KYADGAFADFKQESGPSS   87 (88)
T ss_dssp             CSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCC-CCCCCSSSCCCCCCCCCC
T ss_pred             cccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhh-cccccccccccccCCCCC
Confidence            6788999999999999999999999999999999999997765    345555666 6677632     555544

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.93  E-value=6.5e-10  Score=52.61  Aligned_cols=37  Identities=14%  Similarity=0.216  Sum_probs=32.6

Q ss_pred             CCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCeec
Q psy4407          62 PDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC   98 (130)
Q Consensus        62 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C   98 (130)
                      |+++++|.|.+|++.|.....|..|+++|+++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            4678899999999999999999999999999998864

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=2.1e-09  Score=57.11  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=32.7

Q ss_pred             hcCCCCeeccc--ChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          90 HTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        90 h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      .+++|||.|..  |+++|.+.+.|..|++++|++  ||||.|
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTg--EKP~~~   61 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKS--DLPAFS   61 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSS--CCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCC--CCCccc
Confidence            46889999964  999999999999997678999  999887

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.85  E-value=2.9e-09  Score=48.94  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=16.3

Q ss_pred             CCCCceeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          62 PDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        62 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      |+++++|.|.+|++.|.....|..|+++|++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            344445555555555555555555555544443

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.85  E-value=3e-09  Score=48.83  Aligned_cols=31  Identities=19%  Similarity=0.401  Sum_probs=14.6

Q ss_pred             CCCceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          63 DKTYIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        63 ~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      .++++|.|.+|++.|.....|..|++.|+++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            3444444444444444444444444444443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2.1e-10  Score=62.51  Aligned_cols=68  Identities=16%  Similarity=0.103  Sum_probs=58.3

Q ss_pred             cccceehhhhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          16 SSGLKVSEVDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      ...|..| ++.+.+++++.|..|++.|. ...|..|        ..+.+++|+.|..|++.|. ...|..|++++++++
T Consensus         2 ~~~L~~H-~~~~c~~r~~~C~~C~~~~~-~~~L~~H--------~~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            2 SSGSSGH-EETECPLRLAVCQHCDLELS-ILKLKEH--------EDYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCSCC-CCCCCCCCCEECSSSCCEEC-HHHHHHH--------HHHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             chHHHhh-CcccCCCcccCCcccChHhh-HHHHHHH--------HhHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            4567777 57899999999999999995 7899999        4677889999999999877 589999999998754

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=2e-09  Score=50.12  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=18.6

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      +|+++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            3455555555555555555555555555555544

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.84  E-value=1.2e-09  Score=50.18  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=32.3

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP  126 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~  126 (130)
                      +|+++++|.|..|++.|.+...|..|+ ++|++  ++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~h~~--~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHI-REVHG--AAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHH-HHTSC--TTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHH-HHHcC--CCC
Confidence            367899999999999999999999999 89999  886

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=3.5e-10  Score=52.85  Aligned_cols=36  Identities=19%  Similarity=0.445  Sum_probs=33.4

Q ss_pred             HhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCC
Q psy4407          88 RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP  126 (130)
Q Consensus        88 ~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~  126 (130)
                      ++|+++++|.|..|++.|.....|..|+ ++|++  ++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~h~~--~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHI-KTNHP--EVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHH-HHHCS--SCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHH-HHHcC--CCC
Confidence            4688999999999999999999999999 89999  886

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.83  E-value=1.3e-09  Score=50.13  Aligned_cols=35  Identities=29%  Similarity=0.614  Sum_probs=32.4

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP  126 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~  126 (130)
                      +|+++++|.|..|++.|.....|..|+ ++|++  ++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~--~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHL-KVHTD--TLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHH-GGGTS--CCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHH-HHcCC--CCC
Confidence            378899999999999999999999999 89999  876

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.82  E-value=5.9e-10  Score=52.02  Aligned_cols=31  Identities=19%  Similarity=0.428  Sum_probs=15.0

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhc
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      +|++++||.|..|++.|.....|..|++.|+
T Consensus         5 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             cCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            4444444445444444444444444444444

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.77  E-value=4.1e-11  Score=67.38  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=49.0

Q ss_pred             hhhcccCcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          24 VDFRFETEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        24 ~~~~~~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      .++|+++++|.|..|++.|.....|..|.       ++|++++||.|..|.+    ...+..|.+.|.+
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~-------~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHL-------NIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHH-------HHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHH-------HHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            46799999999999999999999999998       8999999999987664    4445566677765

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.75  E-value=5.8e-09  Score=47.44  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=15.5

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcCCCCe
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTGEKPF   96 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~   96 (130)
                      ||.|.+|++.|.....|..|+++|+++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            445555555555555555555555555444

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=1.1e-08  Score=47.60  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=23.1

Q ss_pred             ccCCCCceeeCCCCCCcccCc-hhHHHHHHhhcCC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKR-SHIKEHIRQHTGE   93 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~-~~l~~h~~~h~~~   93 (130)
                      ++|+++++|.|..|++.|... ..|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            346666777777777777776 6777777776654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=1.2e-08  Score=47.12  Aligned_cols=33  Identities=30%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      .|.++++|.|.+|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            455566666666666666666666666665543

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1.3e-08  Score=46.88  Aligned_cols=33  Identities=33%  Similarity=0.680  Sum_probs=22.3

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +|.++++|.|..|++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            456666777777777777777777777666654

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.72  E-value=3e-09  Score=48.45  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=30.6

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      +||.|.+|++.|.....|..|+ ++|+|  |+||..
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~-~~H~~--~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHI-TLHEL--LGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHH-HHHTT--TCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHH-HHhCC--CCCCCC
Confidence            5899999999999999999999 89999  999863

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1.1e-08  Score=47.20  Aligned_cols=31  Identities=16%  Similarity=0.376  Sum_probs=15.9

Q ss_pred             CCCCceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          62 PDKTYIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        62 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      |+++++|.|.+|++.|.....|..|+++|++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            4444555555555555555555555555544

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=2.3e-09  Score=50.28  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=17.7

Q ss_pred             CCCceeeCC--CCCCcccCchhHHHHHHhhcCCCCe
Q psy4407          63 DKTYIFTCF--ACEYHSAKRSHIKEHIRQHTGEKPF   96 (130)
Q Consensus        63 ~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~k~~   96 (130)
                      +++++|.|.  .|++.|.....|..|+++|+++++|
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            344555555  3555555555555555555555443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=1.1e-08  Score=47.87  Aligned_cols=36  Identities=28%  Similarity=0.470  Sum_probs=32.5

Q ss_pred             hcCCCCeecc--cChhhhcCcchHHHhhhhcCCCCCCCCcc
Q psy4407          90 HTGEKPFSCL--LCEYKAAKKSNLTKHMSKKHPSSYEDPFF  128 (130)
Q Consensus        90 h~~~k~~~C~--~C~~~f~~~~~l~~h~~~~h~g~~e~~~~  128 (130)
                      |+++++|.|.  .|++.|.....|..|+ ++|++  ++||.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~-~~H~~--~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHK-HKHEM--TLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHH-HHHHT--TTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHH-HHhCC--CCCCC
Confidence            5688999999  5999999999999999 89999  99984

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1.9e-08  Score=47.44  Aligned_cols=33  Identities=18%  Similarity=0.568  Sum_probs=21.9

Q ss_pred             cCCCCceeeCCC--CCCcccCchhHHHHHHhhcCC
Q psy4407          61 RPDKTYIFTCFA--CEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        61 ~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      .+.+++||.|..  |++.|.....|..|+++|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            345666777764  777777777777777776654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.69  E-value=1.9e-08  Score=46.67  Aligned_cols=35  Identities=34%  Similarity=0.594  Sum_probs=28.3

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |+++|++++||.|..|++.|.....|..|+ ++|.|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHH-GGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHH-HHhcc
Confidence            456778888888888888888888888888 77776

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=2.2e-08  Score=46.10  Aligned_cols=33  Identities=18%  Similarity=0.272  Sum_probs=22.7

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +|.++++|.|.+|++.|.....|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            455666777777777777777777777776654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=8.3e-09  Score=47.68  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      .|+++++|.|..|++.|.....|..|+ ++|++  ++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~--~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHM-LVHGD--KW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHH-TTTST--TC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHH-HHhcC--CC
Confidence            477899999999999999999999999 89998  75

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=3.7e-09  Score=49.37  Aligned_cols=32  Identities=25%  Similarity=0.632  Sum_probs=18.0

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHH-HHhhcC
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEH-IRQHTG   92 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h-~~~h~~   92 (130)
                      +|++++||.|..|++.|.....|..| ++.|++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            45555555555555555555555555 555544

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=3.2e-08  Score=45.59  Aligned_cols=33  Identities=30%  Similarity=0.476  Sum_probs=22.4

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      .+.++++|.|..|++.|.....|..|+++|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            345666777777777777777777777776654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.64  E-value=2.6e-09  Score=48.25  Aligned_cols=31  Identities=23%  Similarity=0.404  Sum_probs=27.4

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCCCCCCCc
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF  127 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~  127 (130)
                      +||.|..|++.|.....|..|+ ++|++  ++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~-~~H~~--~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHI-KTAFI--VVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSST-TSSSS--SSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHH-HHHcc--CCCC
Confidence            5788999999999999999999 88999  9887

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.2e-08  Score=47.12  Aligned_cols=34  Identities=47%  Similarity=0.906  Sum_probs=31.3

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      .|+++++|.|..|++.|.....|..|+ ++|++  ++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~--~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHM-NRHST--EK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHH-HHSST--TC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHH-HHhcc--CC
Confidence            578899999999999999999999999 88998  75

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=9.3e-09  Score=48.53  Aligned_cols=31  Identities=26%  Similarity=0.560  Sum_probs=29.0

Q ss_pred             hcCCCCeeccc--ChhhhcCcchHHHhhhhcCCC
Q psy4407          90 HTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        90 h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +++++||.|.+  |++.|...+.|..|+ ++|+|
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~-r~Htg   36 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHL-KVHTA   36 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHH-HHHSC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHH-HhcCC
Confidence            57899999986  999999999999999 89998

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.62  E-value=1.2e-08  Score=50.55  Aligned_cols=33  Identities=21%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             CCCCceeeCCCCCCcccCchhHHHHHH-hhcCCC
Q psy4407          62 PDKTYIFTCFACEYHSAKRSHIKEHIR-QHTGEK   94 (130)
Q Consensus        62 h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h~~~k   94 (130)
                      |+++++|.|.+|++.|.....|..|++ +|+++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            556666666666666666666666666 666543

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=6.1e-09  Score=48.46  Aligned_cols=35  Identities=20%  Similarity=0.496  Sum_probs=31.6

Q ss_pred             HhhcCCCCeecccChhhhcCc-chHHHhhhhcCCCCCCC
Q psy4407          88 RQHTGEKPFSCLLCEYKAAKK-SNLTKHMSKKHPSSYED  125 (130)
Q Consensus        88 ~~h~~~k~~~C~~C~~~f~~~-~~l~~h~~~~h~g~~e~  125 (130)
                      ++|+++++|.|..|++.|... ..|..|+ ++|++  |+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~-~~H~~--~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHI-WAHEG--VK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHH-HHHHT--CC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHH-HhcCC--CC
Confidence            357889999999999999999 9999999 88988  64

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=3.7e-08  Score=45.80  Aligned_cols=33  Identities=24%  Similarity=0.594  Sum_probs=27.6

Q ss_pred             HhhcCCCCeecccChhhhcCcchHHHh-hhhcCCC
Q psy4407          88 RQHTGEKPFSCLLCEYKAAKKSNLTKH-MSKKHPS  121 (130)
Q Consensus        88 ~~h~~~k~~~C~~C~~~f~~~~~l~~h-~~~~h~g  121 (130)
                      ++|++++||.|..|++.|.....|..| + ++|++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~~H~~   35 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVI-QKHSN   35 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHH-HHTCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHH-HHccC
Confidence            457888889998899998888888888 6 78877

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1e-08  Score=47.29  Aligned_cols=34  Identities=38%  Similarity=0.786  Sum_probs=31.2

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      +|+++++|.|..|++.|.....|..|+ ++|++  |+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~--~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHL-RKHTG--EK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHH-HHHTC--CC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHH-HHccC--CC
Confidence            478899999999999999999999999 88998  75

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.58  E-value=3.6e-08  Score=48.76  Aligned_cols=36  Identities=22%  Similarity=0.584  Sum_probs=25.8

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP  126 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~  126 (130)
                      +|+++++|.|.+|++.|.....|..|++.+|++  |.+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~--e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLA--EEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-----
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCC--CCC
Confidence            367788888888888888888888888337887  643

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=1.5e-08  Score=46.68  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=31.1

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      .|+++++|.|.+|++.|.....|..|+ ++|++  |+
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~-~~H~~--ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHK-LLHTA--DG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHH-HHHSS--CC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHH-HHhcC--CC
Confidence            467899999999999999999999999 88998  75

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.53  E-value=9.3e-08  Score=44.38  Aligned_cols=32  Identities=41%  Similarity=0.725  Sum_probs=22.4

Q ss_pred             CCCCceeeCC--CCCCcccCchhHHHHHHhhcCC
Q psy4407          62 PDKTYIFTCF--ACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        62 h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      ++++++|.|.  .|++.|.....|..|+++|+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            5566777776  3777777777777777777665

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=2.9e-08  Score=45.77  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=30.8

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      .|.++++|.|..|++.|.....|..|+ ++|++  ++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~--~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHL-RIHTN--EK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHH-HHHCC--CC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHH-HHhCC--CC
Confidence            467889999999999999999999999 88998  75

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.47  E-value=1.4e-07  Score=41.15  Aligned_cols=28  Identities=14%  Similarity=0.320  Sum_probs=14.9

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +||.|..|++.|.....|..|++.|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            3455555555555555555555555443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.47  E-value=8.2e-09  Score=50.86  Aligned_cols=33  Identities=24%  Similarity=0.549  Sum_probs=17.7

Q ss_pred             cCCCCceeeCC--CCCCcccCchhHHHHHHhhcCC
Q psy4407          61 RPDKTYIFTCF--ACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        61 ~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      .|.+++||.|.  .|++.|.....|..|+++|+++
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            44555555553  4555555555555555555543

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.47  E-value=4.4e-08  Score=45.57  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=17.4

Q ss_pred             CCCCceeeCCCCCCcccCchhHHHHH
Q psy4407          62 PDKTYIFTCFACEYHSAKRSHIKEHI   87 (130)
Q Consensus        62 h~~~~~~~C~~C~~~f~~~~~l~~h~   87 (130)
                      ..+++||.|.+||+.|...+.|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            34566677777777777777766665

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.43  E-value=1.8e-07  Score=40.58  Aligned_cols=27  Identities=26%  Similarity=0.519  Sum_probs=15.2

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      ||.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            455555555555555555555555543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.42  E-value=1.9e-07  Score=45.75  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=25.3

Q ss_pred             HHHhhcCCCCeecc--cChhhhcCcchHHHhhhhcCCC
Q psy4407          86 HIRQHTGEKPFSCL--LCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        86 h~~~h~~~k~~~C~--~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |...|+++++|.|.  .|++.|.....|..|+ ++|+|
T Consensus         9 ~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~-~~H~~   45 (47)
T 1ncs_A            9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHI-QTHLE   45 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHH-HHHTT
T ss_pred             HHhccCCCCCeECCCCCCCCccCCHHHHHHHH-HHccC
Confidence            34457777777774  5777777777777777 67777

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.40  E-value=1.4e-07  Score=41.24  Aligned_cols=30  Identities=20%  Similarity=0.576  Sum_probs=27.5

Q ss_pred             CCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          93 EKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        93 ~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      +++|.|..|++.|.....|..|+ ++|++  ++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~-~~h~~--~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHL-ETHDT--DK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHH-HTTCC--CC
T ss_pred             CcCccCCCCCcccCCHHHHHHHH-HHhcc--CC
Confidence            47899999999999999999999 88998  75

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.39  E-value=2.4e-07  Score=40.12  Aligned_cols=28  Identities=29%  Similarity=0.579  Sum_probs=20.4

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +||.|.+|++.|.....|..|+++|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            3577777777777777777777777665

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.39  E-value=5.3e-08  Score=45.27  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             hhcCCCCeecc--cChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          89 QHTGEKPFSCL--LCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        89 ~h~~~k~~~C~--~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      .|+++++|.|.  .|++.|.....|..|+ ++|+|  |+
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~-~~H~~--ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHL-RWHTG--ER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHH-HHHHT--TC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHH-HhcCC--CC
Confidence            36789999998  4999999999999999 88998  75

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.38  E-value=2.8e-07  Score=39.92  Aligned_cols=27  Identities=41%  Similarity=0.751  Sum_probs=18.3

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      ||.|..|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            566777777777777777776666654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.37  E-value=3.3e-07  Score=48.46  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      ..+.+++||.|.+|++.|.....|..|+++|+++.
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            45678899999999999999999999999998854

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.36  E-value=1.5e-07  Score=40.84  Aligned_cols=29  Identities=24%  Similarity=0.480  Sum_probs=26.7

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      +||.|..|++.|.....|..|+ ++|++  ++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~-~~H~~--~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHI-LLHEN--KK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHH-TGGGS--CC
T ss_pred             CCccCCCCCchhCCHHHHHHHH-HHhcC--CC
Confidence            5899999999999999999999 88998  75

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.36  E-value=4.1e-07  Score=40.50  Aligned_cols=27  Identities=15%  Similarity=0.428  Sum_probs=13.6

Q ss_pred             ceeeCC--CCCCcccCchhHHHHHHhhcC
Q psy4407          66 YIFTCF--ACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        66 ~~~~C~--~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      +||.|.  .|++.|.....|..|+++|++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            344554  455555555555555555544

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.35  E-value=3e-07  Score=39.71  Aligned_cols=28  Identities=18%  Similarity=0.442  Sum_probs=18.9

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            3566777777777777777777666654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.33  E-value=9e-08  Score=42.97  Aligned_cols=29  Identities=7%  Similarity=0.064  Sum_probs=17.3

Q ss_pred             ceecccccccccCccccccccCCCCCCcccCCCCce
Q psy4407          32 MLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYI   67 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~   67 (130)
                      ||.|..||+.|...+.|..|+       ++|++++|
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~-------~~H~~~kp   30 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHI-------KTAFIVVA   30 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSST-------TSSSSSSS
T ss_pred             CCCCCCCCcccCCHHHHHHHH-------HHHccCCC
Confidence            556666666666666666665       55555554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.33  E-value=4e-07  Score=39.63  Aligned_cols=28  Identities=32%  Similarity=0.738  Sum_probs=16.8

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      +|.|.+|++.|.....|..|+++|++++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            4556666666666666666666665543

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.31  E-value=3.1e-07  Score=40.92  Aligned_cols=30  Identities=27%  Similarity=0.659  Sum_probs=27.4

Q ss_pred             CCCeecc--cChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          93 EKPFSCL--LCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        93 ~k~~~C~--~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      ++||.|.  .|++.|.....|..|+ ++|++  ++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~-~~H~~--~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHK-KSHQE--KA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHH-GGGTC--CC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHH-HHccC--CC
Confidence            4789999  8999999999999999 89998  75

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.31  E-value=4.2e-07  Score=40.17  Aligned_cols=26  Identities=31%  Similarity=0.637  Sum_probs=12.3

Q ss_pred             eeeCC--CCCCcccCchhHHHHHHhhcC
Q psy4407          67 IFTCF--ACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        67 ~~~C~--~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      ||.|.  .||+.|.....|..|+++|++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~   29 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTG   29 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcC
Confidence            34444  444444444444444444444

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.30  E-value=2.4e-07  Score=43.00  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=26.8

Q ss_pred             hcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          90 HTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        90 h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +++++||.|.+|++.|.+.+.|..|+ ..+..
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-py~C~   33 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-AYYCS   33 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-HHTST
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-CeECc
Confidence            46899999999999999999999998 44443

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.29  E-value=4.8e-07  Score=38.63  Aligned_cols=25  Identities=32%  Similarity=0.598  Sum_probs=14.0

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhh
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      +||.|..||+.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4555555555555555555555544

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.29  E-value=4.5e-07  Score=39.02  Aligned_cols=24  Identities=21%  Similarity=0.556  Sum_probs=11.6

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhh
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      +|.|.+|++.|.....|..|+++|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CccCCCCCcccCCHHHHHHHHHhc
Confidence            444444544444444444444444

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.28  E-value=3.1e-07  Score=40.62  Aligned_cols=29  Identities=28%  Similarity=0.742  Sum_probs=26.6

Q ss_pred             CCeecc--cChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          94 KPFSCL--LCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        94 k~~~C~--~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      +||.|.  .|++.|.....|..|+ ++|+|  |+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~-~~H~~--~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHK-RTHTG--EK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHH-TTTSC--CC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHH-HHhcC--CC
Confidence            579998  8999999999999999 99998  75

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.28  E-value=3.3e-07  Score=39.44  Aligned_cols=28  Identities=25%  Similarity=0.650  Sum_probs=25.5

Q ss_pred             CCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          93 EKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        93 ~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +++|.|..|++.|.....|..|+ ++|+|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~-~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHY-RVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHH-TTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHH-HhcCC
Confidence            47899999999999999999999 88875

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.59  E-value=1.1e-07  Score=41.46  Aligned_cols=26  Identities=27%  Similarity=0.706  Sum_probs=15.2

Q ss_pred             CeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ||.|..|++.|.....|..|+ ++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~-~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHV-RQHTG   27 (29)
Confidence            455555666666555666665 55555

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.25  E-value=4.3e-07  Score=39.68  Aligned_cols=27  Identities=26%  Similarity=0.599  Sum_probs=15.4

Q ss_pred             CeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ||.|..|++.|.....|..|+.++|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            455666666666666666662255555

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.57  E-value=1.2e-07  Score=41.48  Aligned_cols=27  Identities=30%  Similarity=0.762  Sum_probs=15.6

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +||.|..|++.|.....|..|+ ++|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~-~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHV-RIHTG   28 (30)
Confidence            4555656666666555566665 55555

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.57  E-value=1.2e-07  Score=41.24  Aligned_cols=28  Identities=36%  Similarity=0.593  Sum_probs=21.2

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            3677888888888888888887777664

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.24  E-value=2.6e-07  Score=48.88  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             hcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          90 HTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        90 h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      +++++||.|.+|++.|.+...|..|+ ++|++  +.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~-r~Htg--~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHE-AQHGV--TS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHH-HHHTT--TS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhh-hhhCC--Cc
Confidence            56789999999999999999999999 88998  64

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.24  E-value=3e-07  Score=40.09  Aligned_cols=30  Identities=37%  Similarity=0.805  Sum_probs=27.0

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCCCCCCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDP  126 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~  126 (130)
                      ++|.|..|++.|.....|..|+ ++|.+  ++|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~-~~h~~--~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHI-KTKHS--KEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHH-HHHTS--SCC
T ss_pred             CCccCCCCCCccCCHHHHHHHH-HHHcc--CCC
Confidence            5799999999999999999999 88888  764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.23  E-value=2.6e-07  Score=40.05  Aligned_cols=29  Identities=28%  Similarity=0.701  Sum_probs=26.4

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      ++|.|..|++.|.....|..|+ ++|++  ++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~-~~h~~--~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHY-RSHTN--EK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHH-HHHSC--CC
T ss_pred             CCeECCCCCcccCCHHHHHHHH-HHhcC--CC
Confidence            5799999999999999999999 88988  64

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.54  E-value=1.5e-07  Score=41.22  Aligned_cols=28  Identities=32%  Similarity=0.700  Sum_probs=20.9

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +||.|..|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            5677777887777777777777777654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.20  E-value=4.8e-07  Score=38.73  Aligned_cols=22  Identities=27%  Similarity=0.718  Sum_probs=10.5

Q ss_pred             CCeecccChhhhcCcchHHHhh
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~  115 (130)
                      +||.|..|++.|.....|..|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~   23 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHM   23 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHH
T ss_pred             cCcCCCCCCcccCCHHHHHHHH
Confidence            3444444444444444444444

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.20  E-value=5.5e-07  Score=38.45  Aligned_cols=27  Identities=48%  Similarity=0.902  Sum_probs=24.4

Q ss_pred             CCCeecccChhhhcCcchHHHhhhhcCC
Q psy4407          93 EKPFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        93 ~k~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                      ++||.|..|++.|.....|..|+ ++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~-~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHL-RTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHH-HHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHH-HHcc
Confidence            47899999999999999999999 7774

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.20  E-value=2.5e-07  Score=39.99  Aligned_cols=29  Identities=31%  Similarity=0.548  Sum_probs=26.3

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      +||.|..|++.|.....|..|+ ++|++  |+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~-~~h~~--~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHL-KIHIA--DG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHH-HHHHS--CC
T ss_pred             CCCcCCCCCcccCCHHHHHHHH-HHhcc--CC
Confidence            5899999999999999999999 88888  64

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.19  E-value=5.5e-07  Score=38.54  Aligned_cols=27  Identities=19%  Similarity=0.475  Sum_probs=24.4

Q ss_pred             CceeeCCCCCCcccCchhHHHHHHhhc
Q psy4407          65 TYIFTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        65 ~~~~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      ++||.|..||+.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999998774

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.19  E-value=2.4e-07  Score=40.08  Aligned_cols=29  Identities=28%  Similarity=0.633  Sum_probs=26.5

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      ++|.|..|++.|.....|..|+ ++|++  |+
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~-~~H~~--~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHL-RIHSG--EK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHH-HHHHT--CC
T ss_pred             CCccCCCCCCccCChhHHHHHH-HHhcC--CC
Confidence            5799999999999999999999 88988  75

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.18  E-value=8.1e-07  Score=38.73  Aligned_cols=29  Identities=21%  Similarity=0.465  Sum_probs=23.1

Q ss_pred             ceeeCCCCCCcccCchhHHHH-HHhhcCCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEH-IRQHTGEK   94 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h-~~~h~~~k   94 (130)
                      +||.|..|++.|.....|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            467888888888888888888 57787653

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.16  E-value=9.5e-07  Score=37.52  Aligned_cols=24  Identities=29%  Similarity=0.594  Sum_probs=11.2

Q ss_pred             eeCCCCCCcccCchhHHHHHHhhc
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      |.|..|++.|.....|..|+++|+
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcC
Confidence            344444444444444444444443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.13  E-value=8.2e-07  Score=37.75  Aligned_cols=26  Identities=35%  Similarity=0.710  Sum_probs=23.7

Q ss_pred             CeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ||.|..|++.|.....|..|+ ++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~-~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQ-RVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHG-GGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHH-HHcCC
Confidence            588999999999999999999 88987

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.28  E-value=6.8e-07  Score=37.77  Aligned_cols=21  Identities=29%  Similarity=0.725  Sum_probs=11.5

Q ss_pred             CeecccChhhhcCcchHHHhh
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~  115 (130)
                      ||.|.+|++.|.....|..|+
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~   22 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHI   22 (26)
Confidence            455555555555555555555

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.28  E-value=7e-07  Score=37.73  Aligned_cols=25  Identities=28%  Similarity=0.584  Sum_probs=16.8

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhh
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      +||.|.+||+.|.....|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            3566777777777777777776655

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.91  E-value=5.8e-06  Score=35.46  Aligned_cols=25  Identities=24%  Similarity=0.636  Sum_probs=13.8

Q ss_pred             eeeCC--CCCCcccCchhHHHHHHhhc
Q psy4407          67 IFTCF--ACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        67 ~~~C~--~C~~~f~~~~~l~~h~~~h~   91 (130)
                      +|.|.  .|++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            45555  55555555555555555554

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.86  E-value=4.4e-06  Score=35.86  Aligned_cols=27  Identities=22%  Similarity=0.459  Sum_probs=24.4

Q ss_pred             CCeecc--cChhhhcCcchHHHhhhhcCCC
Q psy4407          94 KPFSCL--LCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        94 k~~~C~--~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ++|.|.  .|++.|.....|..|+ ++|+|
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~-~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHK-KIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHH-GGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHH-HHhCC
Confidence            579999  9999999999999999 88875

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.64  E-value=6.9e-05  Score=39.13  Aligned_cols=49  Identities=14%  Similarity=0.521  Sum_probs=38.9

Q ss_pred             CCCCCCcccCchhHHHHH-HhhcCCC------Ceecc--cChhhhcCcchHHHhhhhc
Q psy4407          70 CFACEYHSAKRSHIKEHI-RQHTGEK------PFSCL--LCEYKAAKKSNLTKHMSKK  118 (130)
Q Consensus        70 C~~C~~~f~~~~~l~~h~-~~h~~~k------~~~C~--~C~~~f~~~~~l~~h~~~~  118 (130)
                      +..|++.|.+...|..|+ ..|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus         6 W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            6 WKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            356889999999999998 4787655      78996  6998888888899998543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.55  E-value=0.00039  Score=40.98  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=25.2

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      ..++|+++|.|..|++.|.+...|..|+++..
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            56678888888888888888888888876653

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.53  E-value=0.00042  Score=40.85  Aligned_cols=28  Identities=7%  Similarity=0.169  Sum_probs=19.7

Q ss_pred             hhcccCcceecccccccccCcccccccc
Q psy4407          25 DFRFETEMLTCKYCYEFLPNDAEIIADH   52 (130)
Q Consensus        25 ~~~~~~~~~~C~~C~~~~~~~~~l~~h~   52 (130)
                      ..++|+++|.|..|++.|.+...|..|.
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~   70 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHF   70 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHT
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHH
Confidence            3466777777777777777777776664

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0023  Score=33.25  Aligned_cols=50  Identities=16%  Similarity=0.233  Sum_probs=38.8

Q ss_pred             cccccccccCccccccccCCCCCCcccCCCCc------eeeCC--CCCCcccCchhHHHHHHhh
Q psy4407          35 CKYCYEFLPNDAEIIADHCKFCSYKLRPDKTY------IFTCF--ACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        35 C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~------~~~C~--~C~~~f~~~~~l~~h~~~h   90 (130)
                      +..|++.|.+...|..|.+      ..|.+.+      +|.|.  .|++.+.....|..|++..
T Consensus         6 W~~C~~~f~~~~~l~~Hv~------~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            6 WKECPESASSLFDLQRHLL------KDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CTTCCCCCSSHHHHHHHHH------HHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             eCCCCCcCCCHHHHHHHHH------hhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            3459999999999999952      2454333      78886  8999999999999998853

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.57  E-value=0.00091  Score=32.24  Aligned_cols=29  Identities=14%  Similarity=0.308  Sum_probs=20.6

Q ss_pred             cceecccccccccCccccccccCCCCCCc
Q psy4407          31 EMLTCKYCYEFLPNDAEIIADHCKFCSYK   59 (130)
Q Consensus        31 ~~~~C~~C~~~~~~~~~l~~h~c~~C~~~   59 (130)
                      .+|.|+.|+..|.....|+.|++..||..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcch
Confidence            45777777777777777777766666654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.11  E-value=0.014  Score=34.51  Aligned_cols=77  Identities=10%  Similarity=0.140  Sum_probs=43.2

Q ss_pred             CcceecccccccccCccccccccCCCCCCcccCCC-CceeeC------CCCCCcccCchhHHHHHHhhcCCCCeecccCh
Q psy4407          30 TEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDK-TYIFTC------FACEYHSAKRSHIKEHIRQHTGEKPFSCLLCE  102 (130)
Q Consensus        30 ~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~-~~~~~C------~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~  102 (130)
                      .+++.|..|+..|.+.+.+..|.=     ...|.. .+.+.+      ..-+..+....    +...+.+...|.|..|+
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~-----gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~  100 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQ-----SRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCN  100 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHH-----CHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTT
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHC-----cHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCC
Confidence            466889999999998888888810     000000 000000      00011111110    11234456778899999


Q ss_pred             hhhcCcchHHHhh
Q psy4407         103 YKAAKKSNLTKHM  115 (130)
Q Consensus       103 ~~f~~~~~l~~h~  115 (130)
                      ..|.+...+..|.
T Consensus       101 ~~f~s~~~~~~H~  113 (127)
T 1zu1_A          101 MTFSSPVVAESHY  113 (127)
T ss_dssp             EECSSHHHHHHHH
T ss_pred             CEeCCHHHHHHHH
Confidence            9999888888887

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.98  E-value=0.011  Score=35.02  Aligned_cols=28  Identities=11%  Similarity=0.129  Sum_probs=23.7

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHH
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~   88 (130)
                      .+.+...+.|..|+..|.+...+..|..
T Consensus        87 ~~~~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           87 SDGEDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             SSCCCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             ccCCCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            4456677999999999999999999865

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.82  E-value=0.029  Score=26.99  Aligned_cols=25  Identities=12%  Similarity=0.139  Sum_probs=20.9

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhh
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      .++.|+.|+..|.....|+.|++..
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            5688999999999899999998843

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=94.09  E-value=0.032  Score=29.98  Aligned_cols=47  Identities=23%  Similarity=0.494  Sum_probs=29.5

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhh
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~  115 (130)
                      -|.|..||..+ .+..+..|...-.+...|.|..|+..|.. ..++.|.
T Consensus        10 ~F~C~~Cgd~l-KK~kv~~H~~~Cr~~~~~SCIDC~~~F~~-~~y~~Ht   56 (79)
T 1wjv_A           10 FFTCNACGESV-KKIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHV   56 (79)
T ss_dssp             EEEESSSCCEE-ETTHHHHHHHHCTTCCEEEETTTTEEEEG-GGTTTCC
T ss_pred             EEEcCCCCCee-ecccchhHHhhCCCCCcEEecccCCeeCC-CCEeCEe
Confidence            36777777554 35567777665555556777777777764 3455554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.68  E-value=0.099  Score=32.18  Aligned_cols=57  Identities=19%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCc
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF  127 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~  127 (130)
                      .+..|+.|+..+ ....+..|....-..+...|..|+..+ ....+..|. .+++|  +.++
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~-~~~~l~~H~-~~~~~--~~~~  165 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASM-AFEDKEIHD-QNCPL--ALEH  165 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEE-EGGGHHHHH-TTCCC------
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCcc-CHHHHHhHH-HhCcC--hhhh
Confidence            467899999877 567788998766667888999998866 456789999 99999  7765

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=91.85  E-value=0.094  Score=25.13  Aligned_cols=27  Identities=22%  Similarity=0.855  Sum_probs=16.4

Q ss_pred             ceecccccccccCccccccc---cCCCCCCc
Q psy4407          32 MLTCKYCYEFLPNDAEIIAD---HCKFCSYK   59 (130)
Q Consensus        32 ~~~C~~C~~~~~~~~~l~~h---~c~~C~~~   59 (130)
                      -|.|..||+.|... +|..-   .|+.||..
T Consensus         3 iY~C~rCg~~fs~~-el~~lP~IrCpyCGyr   32 (48)
T 4ayb_P            3 VYRCGKCWKTFTDE-QLKVLPGVRCPYCGYK   32 (48)
T ss_dssp             --CCCCTTTTCCCC-CSCCCSSSCCTTTCCS
T ss_pred             EEEeeccCCCccHH-HHhhCCCcccCccCcE
Confidence            48899999999653 33222   56666654

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=89.43  E-value=0.25  Score=22.29  Aligned_cols=21  Identities=14%  Similarity=0.208  Sum_probs=11.1

Q ss_pred             CeecccChhhhcCcchHHHhh
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~  115 (130)
                      .+.|..|+..|.....+..|+
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhh
Confidence            344555555555555555555

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=88.67  E-value=0.48  Score=21.12  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=17.7

Q ss_pred             eeeCCCCCCcccCchhHHHHHH
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~   88 (130)
                      .|.|+.|-+.+.+...|..|-.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHHH
Confidence            4888888888888888888854

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=87.89  E-value=0.35  Score=27.44  Aligned_cols=28  Identities=18%  Similarity=0.371  Sum_probs=17.5

Q ss_pred             CcceecccccccccCccccccccCCCCCC
Q psy4407          30 TEMLTCKYCYEFLPNDAEIIADHCKFCSY   58 (130)
Q Consensus        30 ~~~~~C~~C~~~~~~~~~l~~h~c~~C~~   58 (130)
                      ..||+|..||..|. ...-....|+.|+.
T Consensus        65 v~p~~C~~CG~~F~-~~~~kPsrCP~CkS   92 (105)
T 2gmg_A           65 IKPAQCRKCGFVFK-AEINIPSRCPKCKS   92 (105)
T ss_dssp             ECCCBBTTTCCBCC-CCSSCCSSCSSSCC
T ss_pred             EECcChhhCcCeec-ccCCCCCCCcCCCC
Confidence            57899999999982 11112245666643

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=86.77  E-value=0.15  Score=26.93  Aligned_cols=25  Identities=20%  Similarity=0.509  Sum_probs=18.4

Q ss_pred             eecccccccccCccccccccCCCCCCc
Q psy4407          33 LTCKYCYEFLPNDAEIIADHCKFCSYK   59 (130)
Q Consensus        33 ~~C~~C~~~~~~~~~l~~h~c~~C~~~   59 (130)
                      +.|+ |+..+.....-+.+.|+ ||..
T Consensus         5 v~C~-C~~~~~~~~~~kT~~C~-CG~~   29 (71)
T 1gh9_A            5 FRCD-CGRALYSREGAKTRKCV-CGRT   29 (71)
T ss_dssp             EEET-TSCCEEEETTCSEEEET-TTEE
T ss_pred             EECC-CCCEEEEcCCCcEEECC-CCCe
Confidence            5688 88887776666777776 7775

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=85.51  E-value=0.64  Score=28.45  Aligned_cols=55  Identities=15%  Similarity=0.153  Sum_probs=32.4

Q ss_pred             eecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhhcCCCCe
Q psy4407          33 LTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGEKPF   96 (130)
Q Consensus        33 ~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~   96 (130)
                      ..|+.|+..+ ....|..|.       ...-..++..|..|+..+. ...+..|...++|+.++
T Consensus       111 v~C~~C~~~~-~r~~l~~H~-------~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          111 MDCPQCQRPF-QKFHINIHI-------LKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLALEH  165 (170)
T ss_dssp             EECTTTCCEE-EGGGHHHHH-------HHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC----
T ss_pred             eECCCCChHH-HHHHHHHHh-------hhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChhhh
Confidence            3455555544 234444442       2233456678999998764 56789999998887654

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=84.51  E-value=0.61  Score=24.47  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=18.5

Q ss_pred             cCcceecccccccccCccccccccCCCCCC
Q psy4407          29 ETEMLTCKYCYEFLPNDAEIIADHCKFCSY   58 (130)
Q Consensus        29 ~~~~~~C~~C~~~~~~~~~l~~h~c~~C~~   58 (130)
                      ....|.|..||..|..... ..-.|+.||.
T Consensus        25 ~~v~Y~C~~CG~~~e~~~~-d~irCp~CG~   53 (70)
T 1twf_L           25 ATLKYICAECSSKLSLSRT-DAVRCKDCGH   53 (70)
T ss_dssp             CCCCEECSSSCCEECCCTT-STTCCSSSCC
T ss_pred             ceEEEECCCCCCcceeCCC-CCccCCCCCc
Confidence            4566999999999865421 1124666666

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=83.10  E-value=1.1  Score=20.57  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=18.0

Q ss_pred             CceeeCCCCCCcccCchhHHHHHHhhc
Q psy4407          65 TYIFTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        65 ~~~~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      .-.+.|+.|+..+.. .....|...|-
T Consensus         7 ~~~~~C~~C~~~i~~-~~~~EH~D~H~   32 (39)
T 2i5o_A            7 EDQVPCEKCGSLVPV-WDMPEHMDYHF   32 (39)
T ss_dssp             CCEEECTTTCCEEEG-GGHHHHHHHHH
T ss_pred             CCCcccccccCcCCc-ccccchhhHHH
Confidence            345788888888776 45577777664

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=82.35  E-value=1.3  Score=23.31  Aligned_cols=13  Identities=38%  Similarity=0.692  Sum_probs=8.6

Q ss_pred             ceeeCCCCCCccc
Q psy4407          66 YIFTCFACEYHSA   78 (130)
Q Consensus        66 ~~~~C~~C~~~f~   78 (130)
                      ..|.|..|++.|.
T Consensus        43 GIW~C~~C~~~~A   55 (72)
T 3jyw_9           43 GIWTCSCCKKTVA   55 (72)
T ss_dssp             SCBCCSSSCCCCC
T ss_pred             CeEECCCCCCEEe
Confidence            3467777776664

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=80.78  E-value=0.54  Score=25.55  Aligned_cols=11  Identities=36%  Similarity=0.467  Sum_probs=8.3

Q ss_pred             cceeccccccc
Q psy4407          31 EMLTCKYCYEF   41 (130)
Q Consensus        31 ~~~~C~~C~~~   41 (130)
                      ..|.|+.||+.
T Consensus        26 ~~y~Cp~CG~~   36 (83)
T 1vq8_Z           26 EDHACPNCGED   36 (83)
T ss_dssp             SCEECSSSCCE
T ss_pred             ccCcCCCCCCc
Confidence            46888888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-08
d1p7aa_	37	g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (	1e-06
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	1e-06
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	1e-06
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	7e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	1e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.003
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	8e-04
d1ncsa_	47	g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's ye	0.004
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.002
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.002
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.004

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (104), Expect = 6e-08
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 88  RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
           R H+GEKP+ C +C  +  +   +  H+ +KH
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Length = 37

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (95), Expect = 1e-06
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
             R  TG KPF C  C+   ++  +L  H  K+H
Sbjct: 2   STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRH 34

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 1e-06
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 86  HIRQHTGEKPFSCLLCEYKAAKKSNLTKHM 115
              Q    + + C  C    +  S+L+KH 
Sbjct: 3   SEWQQRERRRYKCDECGKSFSHSSDLSKHR 32

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 1e-06
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 88  RQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSY 123
           R HTGEKP++C  C+    +K  L  H  + H  ++
Sbjct: 1   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 36

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (89), Expect = 7e-06
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 90  HTGEKPFSCLLCEYKAAKKSNLTKHM 115
           H+GEKP+ C+ C    ++ S L +H 
Sbjct: 2   HSGEKPYGCVECGKAFSRSSILVQHQ 27

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 1e-04
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 65 TYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSC 98
          ++     AC      + H+KEH++ H+  + + C
Sbjct: 1  SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 2e-04
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 68 FTCFACEYHSAKRSHIKEHIRQ-HTGEKPFSC 98
          + C +C    ++  H+  HI+Q HT E+P  C
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.5 bits (72), Expect = 0.003
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 91  TGEKPFSCLLCEYKAAKKSNLTKHMSKKH 119
           +  KP+ C  C    ++  +L  H+ + H
Sbjct: 1   SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.0 bits (75), Expect = 8e-04
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 77  SAKRSHIKEHIRQHTGEKPFSCLLCE--YKAAKKSNLTKHM 115
           +  R  I ++++    +K F CL         ++ N+  H+
Sbjct: 1   TLPRGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHI 40

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.4 bits (71), Expect = 0.004
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 63 DKTYIFTCFACEYHSAKRSHIKEHIRQHTGEK 94
          DKT+      C     +R +I+ HI+ H  ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.0 bits (73), Expect = 0.002
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 90  HTGEKPFSCLLCEYKAAKKSNLTKHM 115
            +G++PF C +C      K+N  +H+
Sbjct: 2   SSGKRPFVCRICLSAFTTKANCARHL 27

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (73), Expect = 0.002
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 68 FTCFACEYHSAKRSHIKEHIRQHTGEK 94
          F C  C     +  H+ +HI+ H  +K
Sbjct: 3  FACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.8 bits (70), Expect = 0.004
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 64 KTYIFTCFACEYHSAKRSHIKEHIRQHTGEK 94
          + ++ T   C     +   ++ H R HTGEK
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.71
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.62
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.54
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.35
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.33
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.28
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.23
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.22
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.19
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.18
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.17
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.13
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.12
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.09
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.08
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.08
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.08
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.07
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.05
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.04
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.03
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.02
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.98
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.96
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.96
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.9
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.78
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.76
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.75
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.67
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.66
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.66
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.48
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.42
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.39
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.38
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.31
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.24
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.23
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.2
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.12
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.07
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.06
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.97
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.97
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.95
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.94
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.82
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.75
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.54
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.52
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.48
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.43
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.42
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.42
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.4
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.33
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.27
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.26
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.25
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.06
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.83
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.83
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.81
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.8
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.74
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.7
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.68
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.6
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.59
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.57
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.48
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.43
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.41
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.39
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.25
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.07
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.06
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.92
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.88
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.49
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.42
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	95.13
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.07
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.07
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.04
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.11
d1y0jb1	36	U-shaped transcription factor, different fingers {	93.44
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.26
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	92.17
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	91.75
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.59
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.59
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.13
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	88.38
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	85.04
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	84.56
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	84.29
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	84.15
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	83.71
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	83.22
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	83.1
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	82.78
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	82.39
d1d4ua2	36	DNA repair factor XPA DNA- and RPA-binding domain,	81.97
d1fu9a_	36	U-shaped transcription factor, different fingers {	81.47
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	80.91

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4e-18  Score=86.25  Aligned_cols=53  Identities=30%  Similarity=0.637  Sum_probs=49.6

Q ss_pred             CceeeCCCCCCcccCchhHHHHHHhhcCCCCeecccChhhhcCcchHHHhhhhcC
Q psy4407          65 TYIFTCFACEYHSAKRSHIKEHIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKH  119 (130)
Q Consensus        65 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h  119 (130)
                      |+||.| .||+.|.....|..|+++|++++||.|.+|++.|.+.+.|..|+ ++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~-r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHH-TTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHH-hcC
Confidence            689999 59999999999999999999999999999999999999999999 776

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.3e-17  Score=82.36  Aligned_cols=53  Identities=13%  Similarity=0.266  Sum_probs=50.7

Q ss_pred             CcceecccccccccCccccccccCCCCCCcccCCCCceeeCCCCCCcccCchhHHHHHHhh
Q psy4407          30 TEMLTCKYCYEFLPNDAEIIADHCKFCSYKLRPDKTYIFTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        30 ~~~~~C~~C~~~~~~~~~l~~h~c~~C~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      |+||.| .||+.|.....|..|+       ++|++++||.|.+||+.|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~-------~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHM-------SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHH-------HHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHh-------hccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            689999 5999999999999999       9999999999999999999999999999876

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.7e-15  Score=70.70  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=30.6

Q ss_pred             CCCCeecccChhhhcCcchHHHhhhhcCCCCCCCCccCC
Q psy4407          92 GEKPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPFFVS  130 (130)
Q Consensus        92 ~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~~C~  130 (130)
                      .+|||.|.+||+.|...+.|..|++++|+|  ||||+|+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~--ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTS--ERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCC--CCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCC--CcCcCCc
Confidence            368888888888888888888887668888  8888885

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.7e-13  Score=63.04  Aligned_cols=37  Identities=27%  Similarity=0.625  Sum_probs=33.3

Q ss_pred             CCceeeCCCCCCcccCchhHHHHHH-hhcCCCCeeccc
Q psy4407          64 KTYIFTCFACEYHSAKRSHIKEHIR-QHTGEKPFSCLL  100 (130)
Q Consensus        64 ~~~~~~C~~C~~~f~~~~~l~~h~~-~h~~~k~~~C~~  100 (130)
                      .++||.|.+||+.|....+|..|++ +|++++||.|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            5789999999999999999999986 799999999863

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4e-14  Score=65.91  Aligned_cols=35  Identities=23%  Similarity=0.434  Sum_probs=23.8

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |+++|++++||.|.+||+.|.+.+.|..|+ ++|+|
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~-r~HtG   37 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHR-RTHTG   37 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHH-TTTCC
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhC-ccCCC
Confidence            455666667777777777777777777776 66666

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.5e-13  Score=61.59  Aligned_cols=31  Identities=35%  Similarity=0.771  Sum_probs=17.1

Q ss_pred             hcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          90 HTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        90 h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |+|++||.|.+|++.|.+.+.|..|+ ++|+|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~-r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQ-RVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHH-HGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhc-cccCC
Confidence            45555555555555555555555555 55555

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.6e-12  Score=58.17  Aligned_cols=33  Identities=27%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             cCCCCceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          61 RPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        61 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +|++++||.|.+||+.|...+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478999999999999999999999999999985

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.2e-12  Score=59.31  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=28.0

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      .+|++++||.|.+||+.|...++|..|+++|+||
T Consensus         5 ~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           5 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            6778888888888888888888888888888875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.7e-12  Score=59.51  Aligned_cols=32  Identities=38%  Similarity=0.705  Sum_probs=16.6

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +|+|++||.|.+|++.|.+.+.|..|+ ++|++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~-r~H~~   33 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHF-KRYHD   33 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHH-HHTTC
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhC-cccCC
Confidence            455555555555555555555555555 44444

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.7e-12  Score=57.05  Aligned_cols=34  Identities=9%  Similarity=0.244  Sum_probs=30.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      ++|+|++||.|.+||+.|...+.|..|+++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            4789999999999999999999999999998764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.2e-12  Score=60.36  Aligned_cols=32  Identities=19%  Similarity=0.392  Sum_probs=17.1

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhc
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      ++|++++||.|.+|++.|.....|..|+++|.
T Consensus         4 R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             STTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            44555555555555555555555555555543

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3e-12  Score=58.54  Aligned_cols=32  Identities=31%  Similarity=0.833  Sum_probs=15.4

Q ss_pred             hhcCCCCeecccChhhhcCcchHHHhhhhcCC
Q psy4407          89 QHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        89 ~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                      +|+|++||.|..|++.|.+...|..|+++.|+
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            34455555555555555555555555433443

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=8.5e-12  Score=56.46  Aligned_cols=31  Identities=19%  Similarity=0.393  Sum_probs=16.5

Q ss_pred             CCCCceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          62 PDKTYIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        62 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      |+|++||.|.+|++.|....+|..|+++|+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            3455555555555555555555555555543

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.8e-11  Score=54.73  Aligned_cols=31  Identities=32%  Similarity=0.743  Sum_probs=28.0

Q ss_pred             hcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          90 HTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        90 h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |+|++||.|.+|++.|.+.+.|..|+ ++|+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~-r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHL-KVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHH-GGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHc-cccCC
Confidence            68899999999999999999999999 88886

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=2.9e-11  Score=51.87  Aligned_cols=28  Identities=36%  Similarity=0.698  Sum_probs=20.0

Q ss_pred             CceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          65 TYIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        65 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      |+||.|.+|++.|...++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            4677777777777777777777777765

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.08  E-value=3.2e-11  Score=52.33  Aligned_cols=26  Identities=27%  Similarity=0.695  Sum_probs=13.8

Q ss_pred             CeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ||.|.+|++.|.+.+.|..|+ ++|+|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~-r~HTg   27 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHY-RSHTN   27 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHH-HTTTS
T ss_pred             cCCCCCCCCCCCCchHccccc-CcccC
Confidence            455555555555555555555 55555

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.08  E-value=1.7e-11  Score=53.25  Aligned_cols=29  Identities=41%  Similarity=0.715  Sum_probs=27.6

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      +||.|.+|++.|...+.|..|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58999999999999999999999999986

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=5.3e-11  Score=54.71  Aligned_cols=35  Identities=34%  Similarity=0.594  Sum_probs=27.5

Q ss_pred             HHHhhcCCCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          86 HIRQHTGEKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        86 h~~~h~~~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |.++|+|++||.|.+|++.|.+.+.|..|+ ++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~-r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHH-GGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHH-hcCcC
Confidence            557788888888888888888888888888 66653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.8e-11  Score=51.68  Aligned_cols=27  Identities=26%  Similarity=0.650  Sum_probs=13.9

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      ||.|.+||+.|...++|..|+++|+|+
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            455555555555555555555555544

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.1e-11  Score=52.83  Aligned_cols=29  Identities=31%  Similarity=0.679  Sum_probs=27.8

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      |||.|.+|++.|.+.+.|..|+ ++|+|  ||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~-r~Htg--eK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHI-KTHQN--KK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHH-HGGGC--CC
T ss_pred             CCEECCcCCCeecchHHhhhhc-CccCC--cC
Confidence            6899999999999999999999 99999  86

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.6e-11  Score=55.99  Aligned_cols=26  Identities=27%  Similarity=0.461  Sum_probs=13.6

Q ss_pred             ChhhhcCcchHHHhhhhcCCCCCCCCccC
Q psy4407         101 CEYKAAKKSNLTKHMSKKHPSSYEDPFFV  129 (130)
Q Consensus       101 C~~~f~~~~~l~~h~~~~h~g~~e~~~~C  129 (130)
                      |++.|.....|..|+ ++|+|  ||||+|
T Consensus         9 C~k~F~~~~~L~~H~-r~Htg--ekpy~C   34 (36)
T d2dlka2           9 CGKSFNFKKHLKEHM-KLHSD--TRDYIC   34 (36)
T ss_dssp             TCCEESSHHHHHHHH-HHHHT--SCCCSC
T ss_pred             CCCeeCChhHhcccc-CeeCC--CCCEeC
Confidence            555555555555555 44555  555555

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.2e-10  Score=53.14  Aligned_cols=33  Identities=18%  Similarity=0.353  Sum_probs=27.5

Q ss_pred             ccCCCCceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          60 LRPDKTYIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        60 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      ++|+|++||.|..|++.|....+|..|++.+.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            478899999999999999999999999765433

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=1.4e-11  Score=52.91  Aligned_cols=28  Identities=32%  Similarity=0.809  Sum_probs=26.6

Q ss_pred             CCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          93 EKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        93 ~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ||||.|.+|++.|.+.+.|..|+ ++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~-r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHI-RTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHH-HHHHC
T ss_pred             CcCccCCCCcCEecccccccccC-CCccC
Confidence            68999999999999999999999 98986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=9.6e-12  Score=60.20  Aligned_cols=32  Identities=25%  Similarity=0.509  Sum_probs=17.0

Q ss_pred             CCCCceeeCCC--CCCcccCchhHHHHHHhhcCC
Q psy4407          62 PDKTYIFTCFA--CEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        62 h~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      |.+++||.|..  |++.|...++|..|+++|+|+
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            45555555544  555555555555555555554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=2.5e-10  Score=55.10  Aligned_cols=40  Identities=23%  Similarity=0.593  Sum_probs=30.7

Q ss_pred             hHHHHHHhhcCCCCeeccc--ChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          82 HIKEHIRQHTGEKPFSCLL--CEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        82 ~l~~h~~~h~~~k~~~C~~--C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      .+..|+. |++++||.|..  |++.|...+.|..|+ ++|+|  ||
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~-r~Htg--ek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHI-QTHLE--DR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHH-HHHTT--TC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhc-ccccC--CC
Confidence            3445554 78888888866  888888888888888 88888  75

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.4e-10  Score=51.99  Aligned_cols=32  Identities=28%  Similarity=0.705  Sum_probs=29.5

Q ss_pred             eeCCC--CCCcccCchhHHHHHHhhcCCCCeecc
Q psy4407          68 FTCFA--CEYHSAKRSHIKEHIRQHTGEKPFSCL   99 (130)
Q Consensus        68 ~~C~~--C~~~f~~~~~l~~h~~~h~~~k~~~C~   99 (130)
                      |.|..  |++.|.....|..|+++|+|++||.|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            67866  999999999999999999999999985

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.5e-10  Score=47.30  Aligned_cols=26  Identities=27%  Similarity=0.510  Sum_probs=18.1

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhc
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      |||.|.+||+.|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            46777777777777777777777664

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.2e-10  Score=47.44  Aligned_cols=26  Identities=35%  Similarity=0.724  Sum_probs=24.2

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                      |||.|.+||+.|.+.+.|..|+ ++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hq-riHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQ-RIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH-HHHH
T ss_pred             CCccCCCCcCeeccCcccccCc-cCCC
Confidence            6999999999999999999999 8774

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.1e-09  Score=47.59  Aligned_cols=26  Identities=31%  Similarity=0.639  Sum_probs=13.0

Q ss_pred             eeeCCC--CCCcccCchhHHHHHHhhcC
Q psy4407          67 IFTCFA--CEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        67 ~~~C~~--C~~~f~~~~~l~~h~~~h~~   92 (130)
                      ||.|..  |++.|...++|..|+++|+|
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtG   29 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTG   29 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTT
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcC
Confidence            444544  55555555555555555544

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.6e-09  Score=46.34  Aligned_cols=27  Identities=30%  Similarity=0.725  Sum_probs=24.9

Q ss_pred             CCeeccc--ChhhhcCcchHHHhhhhcCCC
Q psy4407          94 KPFSCLL--CEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        94 k~~~C~~--C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |||.|..  |++.|...+.|..|+ ++|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~-r~HtG   29 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHL-RSHTG   29 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHH-HHTTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhc-CcCcC
Confidence            6899988  999999999999999 99998

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.2e-09  Score=46.09  Aligned_cols=28  Identities=29%  Similarity=0.571  Sum_probs=18.0

Q ss_pred             ceeeCCC--CCCcccCchhHHHHHHhhcCC
Q psy4407          66 YIFTCFA--CEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        66 ~~~~C~~--C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +||.|..  |++.|...++|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4566655  666666666666666666654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=6.2e-09  Score=45.54  Aligned_cols=27  Identities=26%  Similarity=0.747  Sum_probs=14.3

Q ss_pred             CCeecc--cChhhhcCcchHHHhhhhcCCC
Q psy4407          94 KPFSCL--LCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        94 k~~~C~--~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +||.|.  .|++.|...+.|..|+ ++|+|
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~-r~Htg   29 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHK-RTHTG   29 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHH-TTTSC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhc-Ccccc
Confidence            345553  3555555555555555 55555

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.2e-09  Score=46.11  Aligned_cols=29  Identities=34%  Similarity=0.629  Sum_probs=26.5

Q ss_pred             ceeeCC--CCCCcccCchhHHHHHHhhcCCC
Q psy4407          66 YIFTCF--ACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        66 ~~~~C~--~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      +||.|+  .|++.|...++|..|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589995  69999999999999999999985

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.4e-09  Score=47.30  Aligned_cols=27  Identities=33%  Similarity=0.720  Sum_probs=25.5

Q ss_pred             CCeeccc--ChhhhcCcchHHHhhhhcCCC
Q psy4407          94 KPFSCLL--CEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        94 k~~~C~~--C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |||.|..  |++.|...+.|..|+ ++|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~-r~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHV-RIHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHH-HHHHC
T ss_pred             CCccCCCCCCCceECcHHHcCccc-cccCC
Confidence            6899977  999999999999999 89998

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=3.1e-08  Score=42.45  Aligned_cols=27  Identities=30%  Similarity=0.687  Sum_probs=17.2

Q ss_pred             ceeeCCC--CCCcccCchhHHHHHHhhcC
Q psy4407          66 YIFTCFA--CEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        66 ~~~~C~~--C~~~f~~~~~l~~h~~~h~~   92 (130)
                      +||.|..  |++.|...++|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4566655  66666666666666666654

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.4e-08  Score=41.80  Aligned_cols=31  Identities=26%  Similarity=0.547  Sum_probs=24.4

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCCCCCCCc
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPSSYEDPF  127 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~~~  127 (130)
                      +...|..||+.|.....|+.|. ..|+|  ||||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhk-lshs~--ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHK-LSHSG--EKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHG-GGSCS--CCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhh-cccCC--CCCC
Confidence            5567788888888888888888 77888  8887

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=1e-07  Score=41.73  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=13.0

Q ss_pred             ceeeCCC--CCCcccCchhHHHHHHhhc
Q psy4407          66 YIFTCFA--CEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        66 ~~~~C~~--C~~~f~~~~~l~~h~~~h~   91 (130)
                      +||.|..  |++.|....+|..|+++|+
T Consensus         2 rP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             cCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            4455544  5555555555555555544

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=7e-08  Score=42.30  Aligned_cols=28  Identities=29%  Similarity=0.725  Sum_probs=26.1

Q ss_pred             CCCeeccc--ChhhhcCcchHHHhhhhcCCC
Q psy4407          93 EKPFSCLL--CEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        93 ~k~~~C~~--C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ++||.|..  |++.|.....|..|+ ++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~-r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHK-KSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHH-GGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHh-hhccC
Confidence            68999988  999999999999999 98986

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=1.8e-08  Score=43.20  Aligned_cols=27  Identities=26%  Similarity=0.892  Sum_probs=24.9

Q ss_pred             CCeeccc--ChhhhcCcchHHHhhhhcCCC
Q psy4407          94 KPFSCLL--CEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        94 k~~~C~~--C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |||.|..  |++.|...+.|..|+ ++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~-r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHI-RIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHT-HHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhc-CccCC
Confidence            6899977  999999999999999 88876

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.3e-07  Score=40.02  Aligned_cols=25  Identities=28%  Similarity=0.574  Sum_probs=14.2

Q ss_pred             eeeCCC--CCCcccCchhHHHHHHhhc
Q psy4407          67 IFTCFA--CEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        67 ~~~C~~--C~~~f~~~~~l~~h~~~h~   91 (130)
                      ||.|..  ||+.|...++|..|+++|+
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            455544  5566665566666655553

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.5e-07  Score=39.41  Aligned_cols=32  Identities=31%  Similarity=0.530  Sum_probs=26.7

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCCCCee
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGEKPFS   97 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~k~~~   97 (130)
                      +...|..||+.|....+|..|...|.+++||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            44678889999998888999988888888873

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.5e-07  Score=36.79  Aligned_cols=26  Identities=31%  Similarity=0.629  Sum_probs=15.7

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      |++|..|++.|..+..|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            34566666666666666666666554

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.2e-07  Score=40.20  Aligned_cols=26  Identities=35%  Similarity=0.809  Sum_probs=23.6

Q ss_pred             CCeeccc--ChhhhcCcchHHHhhhhcCC
Q psy4407          94 KPFSCLL--CEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        94 k~~~C~~--C~~~f~~~~~l~~h~~~~h~  120 (130)
                      +||.|..  |++.|...+.|..|+ ++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~-r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHI-LTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHH-HHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHH-hhcc
Confidence            6899987  999999999999999 7774

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=9.5e-07  Score=35.94  Aligned_cols=27  Identities=41%  Similarity=0.792  Sum_probs=14.7

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      +||+|..|......++.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555554

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.7e-06  Score=35.44  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=12.9

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhh
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      +||.|..||+.|..+.....|.++|
T Consensus         2 kPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCcccchhhhhhhcchhhhhhhhhc
Confidence            4555555555555555555554444

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=6.8e-07  Score=36.65  Aligned_cols=27  Identities=41%  Similarity=0.741  Sum_probs=24.7

Q ss_pred             CCCeecccChhhhcCcchHHHhhhhcCC
Q psy4407          93 EKPFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        93 ~k~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                      ++||.|..||+.|........|. ++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~-kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHT-KIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHH-GGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhh-hhcc
Confidence            58999999999999999999999 8774

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.5e-06  Score=34.48  Aligned_cols=26  Identities=31%  Similarity=0.652  Sum_probs=23.8

Q ss_pred             CeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      |.+|..|++-|+....|..|+ +.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hm-r~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHM-RCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHG-GGCCC
T ss_pred             CCccchhhhHhcchhHHHHHh-hccCC
Confidence            568999999999999999999 88886

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.1e-06  Score=34.92  Aligned_cols=28  Identities=39%  Similarity=0.943  Sum_probs=26.1

Q ss_pred             CCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          93 EKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        93 ~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ++||+|..|.......+.|..|+ +.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhl-r~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHL-RSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHH-TTCCS
T ss_pred             CCcceeeecccccCCchheEEee-ecccC
Confidence            58999999999999999999999 88998

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.1e-06  Score=34.18  Aligned_cols=27  Identities=37%  Similarity=0.715  Sum_probs=22.2

Q ss_pred             eeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      |.|..||......+.|..|+++|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            678888888888888888888888763

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.4e-06  Score=34.54  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=12.6

Q ss_pred             ecccChhhhcCcchHHHhhhhcCCC
Q psy4407          97 SCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        97 ~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      .|.+||+.|...+.|++|. .+|+|
T Consensus         4 vc~ecgkaf~essklkrh~-lvhtg   27 (28)
T d1ubdc2           4 VCAECGKAFVESSKLKRHQ-LVHTG   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHG-GGTSC
T ss_pred             hHHHHhHHHHHHHHHHHHh-hcccC
Confidence            4555555555555555555 55554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.1e-06  Score=34.79  Aligned_cols=28  Identities=21%  Similarity=0.604  Sum_probs=16.6

Q ss_pred             CceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          65 TYIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        65 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      ++||.|++|...|..+....-|.+.|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            3556666666666666666666665554

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.3e-06  Score=33.08  Aligned_cols=26  Identities=35%  Similarity=0.558  Sum_probs=21.7

Q ss_pred             eeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +.|.+||+.|.-++.|.+|+..|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            57888888888888888888888874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.6e-06  Score=35.40  Aligned_cols=28  Identities=32%  Similarity=0.814  Sum_probs=25.7

Q ss_pred             CCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          93 EKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        93 ~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ++||.|.+|+..|.....+..|. +.|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhv-rshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHV-RSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHH-HHHSC
T ss_pred             CCCcccchHHHHhhccccceEee-ecccC
Confidence            58999999999999999999999 77877

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=4.3e-05  Score=30.32  Aligned_cols=26  Identities=38%  Similarity=0.625  Sum_probs=19.5

Q ss_pred             eCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          69 TCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        69 ~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      +|+.|.+.|.++..|..|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            47777777877777777777777764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.9e-05  Score=31.73  Aligned_cols=25  Identities=32%  Similarity=0.782  Sum_probs=11.8

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhh
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      +||+|..|+..-...+.|..|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            3444444444444444444444444

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.48  E-value=6.7e-05  Score=33.25  Aligned_cols=30  Identities=17%  Similarity=0.398  Sum_probs=22.4

Q ss_pred             CceeeCCCCCCcccCchhHHHHHHhhcCCC
Q psy4407          65 TYIFTCFACEYHSAKRSHIKEHIRQHTGEK   94 (130)
Q Consensus        65 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~~k   94 (130)
                      .+.|.|..|++.|.+...|-.|+..|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            345788888888888888888888776543

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=2.7e-05  Score=34.83  Aligned_cols=25  Identities=28%  Similarity=0.740  Sum_probs=19.3

Q ss_pred             cCCCCeecccChhhhcCcchHHHhh
Q psy4407          91 TGEKPFSCLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        91 ~~~k~~~C~~C~~~f~~~~~l~~h~  115 (130)
                      +|-|||.|..|++.|....++..|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhh
Confidence            4567888888888888887777776

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=7.6e-05  Score=29.93  Aligned_cols=26  Identities=46%  Similarity=0.995  Sum_probs=23.3

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHP  120 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~  120 (130)
                      +||+|..|++.....++|+.|+ ++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~-rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHL-RIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH-HHSC
T ss_pred             CCcccccccchhcchhhHhhhh-hccc
Confidence            7899999999988999999999 8875

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.42  E-value=3.1e-05  Score=32.34  Aligned_cols=27  Identities=30%  Similarity=0.680  Sum_probs=19.6

Q ss_pred             CeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      ||.|.+|++.|.....|-.|..++|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            567777777777777777777677766

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=7.9e-05  Score=30.78  Aligned_cols=23  Identities=17%  Similarity=0.554  Sum_probs=12.0

Q ss_pred             eeeCCC--CCCcccCchhHHHHHHh
Q psy4407          67 IFTCFA--CEYHSAKRSHIKEHIRQ   89 (130)
Q Consensus        67 ~~~C~~--C~~~f~~~~~l~~h~~~   89 (130)
                      ||.|..  |++.+...++|+.|++.
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CeecccCCCCcccCCHHHHHHHHHh
Confidence            455544  55555555555555554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=4.2e-05  Score=31.61  Aligned_cols=26  Identities=38%  Similarity=0.779  Sum_probs=22.5

Q ss_pred             CCeeccc--ChhhhcCcchHHHhhhhcC
Q psy4407          94 KPFSCLL--CEYKAAKKSNLTKHMSKKH  119 (130)
Q Consensus        94 k~~~C~~--C~~~f~~~~~l~~h~~~~h  119 (130)
                      +||.|..  |++++...++|+.|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            6899977  9999999999999995444

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.27  E-value=0.00016  Score=29.44  Aligned_cols=28  Identities=36%  Similarity=0.568  Sum_probs=19.7

Q ss_pred             ceeeCCC--CCCcccCchhHHHHHHhhcCC
Q psy4407          66 YIFTCFA--CEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        66 ~~~~C~~--C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      +||.|..  |.++|.+.-+|.+|..+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            3566654  777787777777777777764

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00018  Score=29.13  Aligned_cols=28  Identities=36%  Similarity=0.726  Sum_probs=20.5

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcCC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~   93 (130)
                      ..|.|..|-..|.....|..|+..|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            4577777777777777777777777764

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=5.3e-05  Score=30.80  Aligned_cols=27  Identities=33%  Similarity=0.612  Sum_probs=24.9

Q ss_pred             eecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          96 FSCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        96 ~~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      |.|..|+......+-|..|+ +.|++  |+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHI-RsHT~--~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHI-RTHTD--VR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHH-HHTSS--CC
T ss_pred             ccccccCcccCCHHHHHHHH-HHhcC--CC
Confidence            78999999999999999999 99998  75

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00012  Score=29.89  Aligned_cols=24  Identities=38%  Similarity=0.789  Sum_probs=14.7

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHh
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQ   89 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~   89 (130)
                      +||.|..|.......++|..|+++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            356666666666666666666654

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=5.8e-05  Score=29.93  Aligned_cols=26  Identities=35%  Similarity=0.517  Sum_probs=23.8

Q ss_pred             ecccChhhhcCcchHHHhhhhcCCCCCCC
Q psy4407          97 SCLLCEYKAAKKSNLTKHMSKKHPSSYED  125 (130)
Q Consensus        97 ~C~~C~~~f~~~~~l~~h~~~~h~g~~e~  125 (130)
                      .|+.|.+.|.+...|..|. +.|+|  |+
T Consensus         2 qcp~c~k~f~skyylkvhn-r~htg--ek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHN-RKHTG--EK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHH-HHHSS--CC
T ss_pred             cCcchHHHHHHhHhhhhcc-ccccC--CC
Confidence            5889999999999999999 88999  85

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00026  Score=27.54  Aligned_cols=21  Identities=33%  Similarity=0.793  Sum_probs=10.4

Q ss_pred             CeecccChhhhcCcchHHHhh
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~  115 (130)
                      ||+|+.|...|.+...|..|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            444555555555554554444

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00063  Score=27.68  Aligned_cols=28  Identities=39%  Similarity=0.882  Sum_probs=22.6

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +||.|.-|.......+.|..|++.-|..
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            5788888888888888888888777765

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.83  E-value=0.00026  Score=27.53  Aligned_cols=22  Identities=41%  Similarity=0.741  Sum_probs=10.9

Q ss_pred             ecccChhhhcCcchHHHhhhhcC
Q psy4407          97 SCLLCEYKAAKKSNLTKHMSKKH  119 (130)
Q Consensus        97 ~C~~C~~~f~~~~~l~~h~~~~h  119 (130)
                      +|..|.++|...+.|..|+ ++|
T Consensus         2 kcglcersfveksalsrhq-rvh   23 (26)
T d1znfa_           2 KCGLCERSFVEKSALSRHQ-RVH   23 (26)
T ss_dssp             BCSSSCCBCSSHHHHHHHG-GGT
T ss_pred             cccchHHHHHHHHHHHHHH-Hhh
Confidence            4444555555555555555 444

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.81  E-value=0.00058  Score=27.57  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=14.0

Q ss_pred             eeeCCC--CCCcccCchhHHHHHHhh
Q psy4407          67 IFTCFA--CEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        67 ~~~C~~--C~~~f~~~~~l~~h~~~h   90 (130)
                      ||.|+.  |++.|...+.|.+|.+.|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            455543  666666666666665554

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.80  E-value=0.00032  Score=30.97  Aligned_cols=27  Identities=22%  Similarity=0.568  Sum_probs=25.0

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +.|.|..|++.|.+...|-.|+ +.|..
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~-~~Hr~   30 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHM-NVHRR   30 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHH-HTTCC
T ss_pred             CccCCCCCCCccCCcccccchH-hhhcc
Confidence            5799999999999999999999 88876

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00079  Score=29.97  Aligned_cols=27  Identities=15%  Similarity=0.314  Sum_probs=23.0

Q ss_pred             CCCceeeCCCCCCcccCchhHHHHHHh
Q psy4407          63 DKTYIFTCFACEYHSAKRSHIKEHIRQ   89 (130)
Q Consensus        63 ~~~~~~~C~~C~~~f~~~~~l~~h~~~   89 (130)
                      +|-|||.|..|++.|.....+..|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            467899999999999999999888653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.70  E-value=0.00046  Score=26.82  Aligned_cols=23  Identities=30%  Similarity=0.618  Sum_probs=17.8

Q ss_pred             eeCCCCCCcccCchhHHHHHHhh
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      |+|..|.+.|.-++.|..|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            46777888888888888887766

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00079  Score=27.24  Aligned_cols=23  Identities=13%  Similarity=0.628  Sum_probs=16.1

Q ss_pred             eeeCCCCCCcccCchhHHHHHHh
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQ   89 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~   89 (130)
                      ||.|..|...|.++.+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            56677777777777777777664

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00036  Score=28.23  Aligned_cols=28  Identities=29%  Similarity=0.625  Sum_probs=25.8

Q ss_pred             CCCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          93 EKPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        93 ~k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +..|.|..|...|...-.|+.|+ ..|+|
T Consensus         2 eqvftcs~cqe~f~rrmelr~hm-vshtg   29 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHM-VSHTG   29 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHH-HHHSS
T ss_pred             cceEEeHHHHHHHHHHHhheeee-ecccC
Confidence            56799999999999999999999 99998

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00081  Score=27.91  Aligned_cols=19  Identities=26%  Similarity=0.511  Sum_probs=8.4

Q ss_pred             ChhhhcCcchHHHhhhhcC
Q psy4407         101 CEYKAAKKSNLTKHMSKKH  119 (130)
Q Consensus       101 C~~~f~~~~~l~~h~~~~h  119 (130)
                      |.+.|...+....|+-++|
T Consensus        10 C~KafsNsSDraKHqnRTH   28 (31)
T d2glia4          10 CSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCCEESSSSTTHHHHHHTT
T ss_pred             hhhhhcchhhhhhhccccc
Confidence            4444444444444433333

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00062  Score=28.27  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=23.3

Q ss_pred             ceeeCCC--CCCcccCchhHHHHH-HhhcC
Q psy4407          66 YIFTCFA--CEYHSAKRSHIKEHI-RQHTG   92 (130)
Q Consensus        66 ~~~~C~~--C~~~f~~~~~l~~h~-~~h~~   92 (130)
                      +||.|..  |.+.|...+....|+ ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            5899977  999999999999997 77754

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.48  E-value=0.00032  Score=28.48  Aligned_cols=27  Identities=37%  Similarity=0.646  Sum_probs=23.8

Q ss_pred             CCeeccc--ChhhhcCcchHHHhhhhcCCC
Q psy4407          94 KPFSCLL--CEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        94 k~~~C~~--C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      +||.|..  |.+.|.....|.+|. -.|+|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs-~thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHS-LTHTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHH-HHHHT
T ss_pred             CCcCcccccccccchhhhhhhhhh-ccccC
Confidence            5888865  999999999999998 88887

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00038  Score=28.30  Aligned_cols=26  Identities=46%  Similarity=0.965  Sum_probs=15.5

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKH  119 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h  119 (130)
                      +||+|..|.....+.+.|..|+++.|
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H   26 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFH   26 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHHc
Confidence            35666666655556666666664444

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.41  E-value=0.0012  Score=27.39  Aligned_cols=26  Identities=23%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             eeeCCCCCCcccCchhHHHHHH-hhcC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIR-QHTG   92 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~-~h~~   92 (130)
                      ||.|.+|++.|....-+..|.. .|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            6889999999998888888865 4544

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0019  Score=28.25  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=17.7

Q ss_pred             CceeeC--CCCCCcccCchhHHHHHHhhc
Q psy4407          65 TYIFTC--FACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        65 ~~~~~C--~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      ++||.|  +.|+..|.+..+|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            567777  447777777777777766553

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0016  Score=25.82  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=15.8

Q ss_pred             eeeCCCCCCcccCchhHHHHHH
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~   88 (130)
                      ||.|..||+.+..+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4677777777777777777754

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.0024  Score=24.71  Aligned_cols=22  Identities=14%  Similarity=0.537  Sum_probs=18.7

Q ss_pred             eeeCCCCCCcccCchhHHHHHH
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~   88 (130)
                      ||+|..|...|..+..|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7889999999988888888864

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.06  E-value=0.00074  Score=27.24  Aligned_cols=25  Identities=32%  Similarity=0.664  Sum_probs=21.5

Q ss_pred             CCeeccc--ChhhhcCcchHHHhhhhcC
Q psy4407          94 KPFSCLL--CEYKAAKKSNLTKHMSKKH  119 (130)
Q Consensus        94 k~~~C~~--C~~~f~~~~~l~~h~~~~h  119 (130)
                      .||.|.-  |++.|...+.|.+|. ++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhe-kvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHE-KVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHH-HHH
T ss_pred             CCccCCccCccccccCHHHHhhhh-hcc
Confidence            5888955  999999999999998 655

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0011  Score=29.13  Aligned_cols=24  Identities=29%  Similarity=0.677  Sum_probs=21.6

Q ss_pred             CCCCeeccc--ChhhhcCcchHHHhh
Q psy4407          92 GEKPFSCLL--CEYKAAKKSNLTKHM  115 (130)
Q Consensus        92 ~~k~~~C~~--C~~~f~~~~~l~~h~  115 (130)
                      .++||.|..  |+.+|.+...|..|+
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk   28 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHK   28 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhh
Confidence            489999955  999999999999998

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.004  Score=25.16  Aligned_cols=27  Identities=22%  Similarity=0.669  Sum_probs=20.5

Q ss_pred             ceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          66 YIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        66 ~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      +||+|..|...-...++|..|++.-.+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            478888888887888888888775433

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0035  Score=24.98  Aligned_cols=22  Identities=27%  Similarity=0.717  Sum_probs=10.8

Q ss_pred             eCCCCCCcccCchhHHHHHHhh
Q psy4407          69 TCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        69 ~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      +|++|.....++..|+.|.+.|
T Consensus         4 kc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGG
T ss_pred             cCcccccccCcHHHHHHhhccc
Confidence            4455555555555555544444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0069  Score=24.11  Aligned_cols=27  Identities=30%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             CCeecccChhhhcCcchHHHhhhhcCCC
Q psy4407          94 KPFSCLLCEYKAAKKSNLTKHMSKKHPS  121 (130)
Q Consensus        94 k~~~C~~C~~~f~~~~~l~~h~~~~h~g  121 (130)
                      .|-+|.+|.++.++...|+.|. ++|..
T Consensus         1 hpekc~ecsyscsskaalrvh~-rihc~   27 (28)
T d1x5wa1           1 HPEKCSECSYSCSSKAALRIHE-RIHCT   27 (28)
T ss_dssp             CSEECSSSSCEESSHHHHHHHH-GGGCC
T ss_pred             CCccCcccccccCcHHHHHHhh-ccccC
Confidence            0457899999999999999999 88764

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0072  Score=27.75  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=22.2

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhc
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~   91 (130)
                      .+.|..||+.|.....|++|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4789999999999999999988874

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0068  Score=25.84  Aligned_cols=20  Identities=30%  Similarity=0.361  Sum_probs=15.2

Q ss_pred             CCcccCchhHHHHHHhhcCC
Q psy4407          74 EYHSAKRSHIKEHIRQHTGE   93 (130)
Q Consensus        74 ~~~f~~~~~l~~h~~~h~~~   93 (130)
                      ++.|.+...|..|++.|+|+
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            45577778888888888875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0072  Score=24.32  Aligned_cols=22  Identities=45%  Similarity=0.987  Sum_probs=20.6

Q ss_pred             CeecccChhhhcCcchHHHhhh
Q psy4407          95 PFSCLLCEYKAAKKSNLTKHMS  116 (130)
Q Consensus        95 ~~~C~~C~~~f~~~~~l~~h~~  116 (130)
                      ||.|..|...|.....|..|++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            7899999999999999999994

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0052  Score=24.40  Aligned_cols=24  Identities=42%  Similarity=0.793  Sum_probs=13.2

Q ss_pred             eecccChhhhcCcchHHHhhhhcC
Q psy4407          96 FSCLLCEYKAAKKSNLTKHMSKKH  119 (130)
Q Consensus        96 ~~C~~C~~~f~~~~~l~~h~~~~h  119 (130)
                      |.|+-|+-.....+.|+.|+|..|
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTS
T ss_pred             ccCCcchhheeehhhhhHHhhhcc
Confidence            455555555555555655554444

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.026  Score=23.73  Aligned_cols=26  Identities=23%  Similarity=0.547  Sum_probs=19.4

Q ss_pred             eeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          67 IFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        67 ~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      .|.|..||+.|.......+|-...+|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            37788888888888888777665554

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.44  E-value=0.012  Score=24.63  Aligned_cols=27  Identities=19%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             cceecccccccccCccccccccCCCCC
Q psy4407          31 EMLTCKYCYEFLPNDAEIIADHCKFCS   57 (130)
Q Consensus        31 ~~~~C~~C~~~~~~~~~l~~h~c~~C~   57 (130)
                      ..|.|..||..|.+.+.|..|+-..|.
T Consensus         7 arf~c~pcgirfss~stleahqtyycs   33 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQAYYCS   33 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTTTTTC
T ss_pred             cceeccccceeecChhHHHhhhheeee
Confidence            347888899999888888888655553

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.0069  Score=27.83  Aligned_cols=23  Identities=13%  Similarity=0.446  Sum_probs=19.8

Q ss_pred             CcceecccccccccCcccccccc
Q psy4407          30 TEMLTCKYCYEFLPNDAEIIADH   52 (130)
Q Consensus        30 ~~~~~C~~C~~~~~~~~~l~~h~   52 (130)
                      ..-|.|..|||.|.....|++|.
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HE   26 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHE   26 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHH
T ss_pred             cceeeccccccccCCHHHHhHhH
Confidence            34588999999999999999884

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.096  Score=20.92  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=15.8

Q ss_pred             eeCCCCCCcccCchhHHHHHHhh
Q psy4407          68 FTCFACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~~h   90 (130)
                      |.|..||+...+.....-|+...
T Consensus         3 ftc~hcgkqlks~~gmkyhvmad   25 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMAN   25 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEeec
Confidence            56777777777777777775543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.017  Score=28.96  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=20.0

Q ss_pred             CCceeeCCCCCCcccCchhHHHHHH
Q psy4407          64 KTYIFTCFACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        64 ~~~~~~C~~C~~~f~~~~~l~~h~~   88 (130)
                      |...|.|..|++.|.+...|..|++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCEEecccccCccCCHHHHHHHHc
Confidence            3445889999999999888888865

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.59  E-value=0.11  Score=19.91  Aligned_cols=21  Identities=14%  Similarity=0.569  Sum_probs=13.1

Q ss_pred             eeCCCCCCcccCchhHHHHHH
Q psy4407          68 FTCFACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        68 ~~C~~C~~~f~~~~~l~~h~~   88 (130)
                      |.|+.|-+.|..+.+...|.+
T Consensus         2 ypcp~cfkeftrkdnm~ahvk   22 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVK   22 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEE
Confidence            456666666666666666654

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.062  Score=26.34  Aligned_cols=20  Identities=10%  Similarity=0.283  Sum_probs=11.5

Q ss_pred             ccCcceecccccccccCccc
Q psy4407          28 FETEMLTCKYCYEFLPNDAE   47 (130)
Q Consensus        28 ~~~~~~~C~~C~~~~~~~~~   47 (130)
                      +....|.|+.|++.|.....
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda   29 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEA   29 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHH
T ss_pred             ccCCceECCCCCCCcchhhH
Confidence            34455666666666654433

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.13  E-value=0.22  Score=19.32  Aligned_cols=20  Identities=30%  Similarity=0.399  Sum_probs=14.3

Q ss_pred             CCCCcccCchhHHHHHHhhc
Q psy4407          72 ACEYHSAKRSHIKEHIRQHT   91 (130)
Q Consensus        72 ~C~~~f~~~~~l~~h~~~h~   91 (130)
                      .|++.|..-..|..|+.+|+
T Consensus         8 ~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeeccc
Confidence            37777777777777777665

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.38  E-value=0.4  Score=21.66  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=17.5

Q ss_pred             CCceeeCCCCCCcccCchhHHHHHH
Q psy4407          64 KTYIFTCFACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        64 ~~~~~~C~~C~~~f~~~~~l~~h~~   88 (130)
                      .+.|-.|+.|+.....+.+|..|+.
T Consensus        21 s~qpatcpic~avirqsrnlrrhle   45 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHH
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHH
Confidence            4566777777777777777777755

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.56  E-value=0.091  Score=26.14  Aligned_cols=24  Identities=8%  Similarity=0.351  Sum_probs=20.7

Q ss_pred             cCcceecccccccccCcccccccc
Q psy4407          29 ETEMLTCKYCYEFLPNDAEIIADH   52 (130)
Q Consensus        29 ~~~~~~C~~C~~~~~~~~~l~~h~   52 (130)
                      |...|-|..|++.|.+...|..|.
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~   35 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHF   35 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHT
T ss_pred             CCCEEecccccCccCCHHHHHHHH
Confidence            455689999999999999998883

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.29  E-value=0.57  Score=22.74  Aligned_cols=28  Identities=14%  Similarity=0.459  Sum_probs=24.4

Q ss_pred             CceeeCCCCCCcccCchhHHHHHHhhcC
Q psy4407          65 TYIFTCFACEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        65 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~   92 (130)
                      ...|.|..|+.-|.+...|..|+..|+.
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhccH
Confidence            4459999999999999999999988864

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.15  E-value=0.39  Score=20.77  Aligned_cols=11  Identities=27%  Similarity=0.926  Sum_probs=6.0

Q ss_pred             ceeeCCCCCCc
Q psy4407          66 YIFTCFACEYH   76 (130)
Q Consensus        66 ~~~~C~~C~~~   76 (130)
                      +.|.|..||..
T Consensus         4 ~~~~C~vCG~i   14 (37)
T d1nnqa2           4 KVYICPICGYT   14 (37)
T ss_dssp             CEEECTTTCCE
T ss_pred             cEEECCCCCCE
Confidence            34566666643

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=83.71  E-value=0.42  Score=20.50  Aligned_cols=11  Identities=27%  Similarity=0.627  Sum_probs=6.0

Q ss_pred             ceeeCCCCCCc
Q psy4407          66 YIFTCFACEYH   76 (130)
Q Consensus        66 ~~~~C~~C~~~   76 (130)
                      +.|.|..||..
T Consensus         4 ~~~vC~vCGyi   14 (36)
T d1yuza2           4 KFHLCPICGYI   14 (36)
T ss_dssp             CEEECSSSCCE
T ss_pred             CEEECCCCCCE
Confidence            44566666543

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=83.22  E-value=0.59  Score=18.84  Aligned_cols=20  Identities=30%  Similarity=0.597  Sum_probs=9.5

Q ss_pred             CCCcccCchhHHHHHHhhcC
Q psy4407          73 CEYHSAKRSHIKEHIRQHTG   92 (130)
Q Consensus        73 C~~~f~~~~~l~~h~~~h~~   92 (130)
                      |+..|...-.|..|+-.|+|
T Consensus        11 C~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          11 CGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GCCEESSHHHHHHHHHHHHC
T ss_pred             cchhhccchhhhHHhhhhcC
Confidence            44444444444555444444

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.10  E-value=0.41  Score=18.81  Aligned_cols=19  Identities=21%  Similarity=0.511  Sum_probs=13.9

Q ss_pred             CCCCcccCchhHHHHHHhh
Q psy4407          72 ACEYHSAKRSHIKEHIRQH   90 (130)
Q Consensus        72 ~C~~~f~~~~~l~~h~~~h   90 (130)
                      .|++.|...+..+.|+.+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3777787777777777665

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.78  E-value=0.17  Score=20.08  Aligned_cols=17  Identities=18%  Similarity=0.385  Sum_probs=8.7

Q ss_pred             CCCCcccCchhHHHHHH
Q psy4407          72 ACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        72 ~C~~~f~~~~~l~~h~~   88 (130)
                      .||+.|.+...|..|.+
T Consensus         7 gc~kifsnrqylnhh~k   23 (30)
T d2dlka1           7 GCGRIFSNRQYLNHHKK   23 (30)
T ss_dssp             TTCCEESSHHHHHHHHH
T ss_pred             CchhhhccHHHHHhHHH
Confidence            35555555555554443

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.39  E-value=0.9  Score=18.90  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=15.7

Q ss_pred             CCceeeCCCCCCcccCchhHHHHHH
Q psy4407          64 KTYIFTCFACEYHSAKRSHIKEHIR   88 (130)
Q Consensus        64 ~~~~~~C~~C~~~f~~~~~l~~h~~   88 (130)
                      ++..|.|..|.+.+...+++-+|-.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHH
Confidence            3445667777777666666666644

>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.97  E-value=0.44  Score=20.15  Aligned_cols=18  Identities=11%  Similarity=0.401  Sum_probs=12.7

Q ss_pred             eecccccccccCccccccc
Q psy4407          33 LTCKYCYEFLPNDAEIIAD   51 (130)
Q Consensus        33 ~~C~~C~~~~~~~~~l~~h   51 (130)
                      -.|..||+.|.. +.|..+
T Consensus         6 ~~C~eCg~~F~D-SYL~~~   23 (36)
T d1d4ua2           6 VICEECGKEFMD-SYLMDH   23 (36)
T ss_dssp             EECTTTCCEESC-SSSTTT
T ss_pred             HHHHHhCcHHHH-HHHHHc
Confidence            469999999976 444444

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.47  E-value=0.31  Score=20.62  Aligned_cols=18  Identities=17%  Similarity=0.349  Sum_probs=9.0

Q ss_pred             cccChhhhcCcchHHHhh
Q psy4407          98 CLLCEYKAAKKSNLTKHM  115 (130)
Q Consensus        98 C~~C~~~f~~~~~l~~h~  115 (130)
                      |..|+..|.+...+..|+
T Consensus        11 C~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             ETTTTEECSSHHHHHHHH
T ss_pred             HhhCCceehhHHHHHHHH
Confidence            444555555555555554

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=80.91  E-value=0.61  Score=21.85  Aligned_cols=16  Identities=19%  Similarity=0.401  Sum_probs=11.8

Q ss_pred             cceecccccccccCcc
Q psy4407          31 EMLTCKYCYEFLPNDA   46 (130)
Q Consensus        31 ~~~~C~~C~~~~~~~~   46 (130)
                      +.|+|..||..|....
T Consensus         2 ~ky~C~~CgyiYd~~~   17 (53)
T d1iroa_           2 KKYTCTVCGYIYNPED   17 (53)
T ss_dssp             CCEEETTTCCEECTTT
T ss_pred             CCeEcCCCCcEECccc
Confidence            3589999998885443