Psyllid ID: psy4412

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------4
Protein Sequence
MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF
Secondary Structure (PSIPRED)
cccccEEEcccccccccccccHHcHHHHccccccEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEHcccccccccHHHHHHHHHccccccEccc
Coil and Loop (DISEMBL)
mdptylyaclwcdyhtlnsghmrdhirrhtgekpfvcpf
Flexible Loop (DISEMBL)
MDPTYLYACLWCDYHTLNSGHMRDHIRRHtgekpfvcpf
Low Complexity Region (SEG)
MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF
Disordered region (IsUnstruct)
***TYLYACLWCDYHTLNSGHMRD***************
Disordered Region (DISOPRED)
**PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF
Disordered Region (DISEMBL)
MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF
Disordered Region (DISPRO)
*DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	39	2.2.26 [Sep-21-2011]
Q5RAU9	589	Zinc finger protein 131 O	yes	N/A	0.846	0.056	0.454	6e-05
P52739	623	Zinc finger protein 131 O	no	N/A	0.846	0.052	0.454	7e-05
Q92010	448	Zinc finger protein 161 h	no	N/A	0.794	0.069	0.548	0.0002
Q8K3J5	619	Zinc finger protein 131 O	no	N/A	0.820	0.051	0.468	0.0002
O43829	449	Zinc finger protein 161 h	no	N/A	0.794	0.069	0.548	0.0003
Q08376	449	Zinc finger protein 161 O	no	N/A	0.794	0.069	0.548	0.0003

>sp|Q5RAU9|ZN131_PONAB Zinc finger protein 131 OS=Pongo abelii GN=ZNF131 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 6   LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
           ++ C +C+    + GH ++H+R+HTGEKPF CP
Sbjct: 293 IHVCQYCEKQFDHFGHFKEHLRKHTGEKPFECP 325

May be involved in transcriptional regulation. Plays a role during development and organogenesis as well as in the function of the adult central nervous system.
Pongo abelii (taxid: 9601)

>sp|P52739|ZN131_HUMAN Zinc finger protein 131 OS=Homo sapiens GN=ZNF131 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 6   LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
           ++ C +C+    + GH ++H+R+HTGEKPF CP
Sbjct: 327 IHVCQYCEKQFDHFGHFKEHLRKHTGEKPFECP 359

May be involved in transcriptional regulation. Plays a role during development and organogenesis as well as in the function of the adult central nervous system.

Homo sapiens (taxid: 9606)

>sp|Q92010|ZF161_CHICK Zinc finger protein 161 homolog OS=Gallus gallus GN=ZFP161 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 7   YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
           +AC  CD    +  H++DH RRH GEKPFVC
Sbjct: 359 FACHMCDKAFKHKSHLKDHERRHRGEKPFVC 389

Transcriptional repressor of MYC and thymidine kinase promoters.

Gallus gallus (taxid: 9031)

>sp|Q8K3J5|ZN131_MOUSE Zinc finger protein 131 OS=Mus musculus GN=Znf131 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 6   LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
           ++ C +CD    + GH ++H+R+HTGEKPF C
Sbjct: 327 IHICQYCDKQFDHFGHFKEHLRKHTGEKPFEC 358

May be involved in transcriptional regulation. Plays a role during development and organogenesis as well as in the function of the adult central nervous system.

Mus musculus (taxid: 10090)

>sp|O43829|ZF161_HUMAN Zinc finger protein 161 homolog OS=Homo sapiens GN=ZFP161 PE=2 SV=2

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 7   YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
           +AC  CD    +  H++DH RRH GEKPFVC
Sbjct: 361 FACHMCDKAFKHKSHLKDHERRHRGEKPFVC 391

Transcriptional repressor of MYC and thymidine kinase promoters (By similarity). Transcriptional activator of the dopamine transporter (DAT), binding it's promoter at the consensus sequence 5'-CCTGCACAGTTCACGGA-3'.

Homo sapiens (taxid: 9606)

>sp|Q08376|ZF161_MOUSE Zinc finger protein 161 OS=Mus musculus GN=Zfp161 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 7   YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
           +AC  CD    +  H++DH RRH GEKPFVC
Sbjct: 361 FACHMCDKAFKHKSHLKDHERRHRGEKPFVC 391

Transcriptional repressor of MYC and thymidine kinase promoters.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	39
402224146	193	hypothetical protein DACRYDRAFT_87475 [D	0.846	0.170	0.545	0.0005
395511424	593	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.846	0.055	0.484	0.0005
334325702	583	PREDICTED: zinc finger protein 131-like	0.846	0.056	0.484	0.0005
224090405	583	PREDICTED: zinc finger protein 131 [Taen	0.846	0.056	0.484	0.0007
432962512	1994	PREDICTED: zinc finger protein 236-like	0.846	0.016	0.545	0.0007
405949966	639	Zinc finger protein 64-like protein, iso	0.846	0.051	0.545	0.0008
363744125	583	PREDICTED: zinc finger protein 131 [Gall	0.846	0.056	0.484	0.0008
326934820	459	PREDICTED: zinc finger protein 131-like,	0.846	0.071	0.484	0.0008

>gi|402224146|gb|EJU04209.1| hypothetical protein DACRYDRAFT_87475 [Dacryopinax sp. DJM-731 SS1]

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF 39
          Y C  CD     SGH+R HI+ HTG+KPF+CP+
Sbjct: 19 YVCSQCDKAFTTSGHLRRHIKVHTGDKPFICPY 51

Source: Dacryopinax sp. DJM-731 SS1

Species: Dacryopinax sp. DJM-731 SS1

Genus: Dacryopinax

Family: Dacrymycetaceae

Order: Dacrymycetales

Class: Dacrymycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|395511424|ref|XP_003759959.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 131 [Sarcophilus harrisii]

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 6   LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
           ++ C +CD    + GH ++H+R+HTGEKPF CP
Sbjct: 294 IHVCQYCDKQFDHFGHFKEHLRKHTGEKPFECP 326

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334325702|ref|XP_003340674.1| PREDICTED: zinc finger protein 131-like [Monodelphis domestica]

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 6   LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
           ++ C +CD    + GH ++H+R+HTGEKPF CP
Sbjct: 294 IHVCQYCDKQFDHFGHFKEHLRKHTGEKPFECP 326

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|224090405|ref|XP_002196563.1| PREDICTED: zinc finger protein 131 [Taeniopygia guttata]

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 6   LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
           ++ C +CD    + GH ++H+R+HTGEKPF CP
Sbjct: 295 IHVCQYCDKQFDHFGHFKEHLRKHTGEKPFECP 327

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432962512|ref|XP_004086706.1| PREDICTED: zinc finger protein 236-like [Oryzias latipes]

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 7   YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF 39
           Y C WC+     S H++ HIR HTGEKPF CP 
Sbjct: 922 YRCSWCNKGFKKSSHLKQHIRSHTGEKPFRCPL 954

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405949966|gb|EKC17976.1| Zinc finger protein 64-like protein, isoforms 1 and 2 [Crassostrea gigas]

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 7   YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF 39
           + C  CDY T+   H++ HIR HTGEKPF C F
Sbjct: 549 FKCQQCDYSTVERSHLKVHIRIHTGEKPFKCTF 581

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|363744125|ref|XP_429143.3| PREDICTED: zinc finger protein 131 [Gallus gallus]

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 6   LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
           ++ C +CD    + GH ++H+R+HTGEKPF CP
Sbjct: 295 IHICQYCDKQFDHFGHFKEHLRKHTGEKPFECP 327

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326934820|ref|XP_003213481.1| PREDICTED: zinc finger protein 131-like, partial [Meleagris gallopavo]

 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 6   LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
           ++ C +CD    + GH ++H+R+HTGEKPF CP
Sbjct: 171 IHICQYCDKQFDHFGHFKEHLRKHTGEKPFECP 203

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	39
ZFIN|ZDB-GENE-080220-12	263	zgc:174919 "zgc:174919" [Danio	0.820	0.121	0.5	1.5e-05
UNIPROTKB|E1C6B5	524	E1C6B5 "Uncharacterized protei	0.846	0.062	0.484	2.3e-05
ZFIN|ZDB-GENE-110914-69	192	si:ch211-79g12.1 "si:ch211-79g	0.794	0.161	0.516	3.1e-05
UNIPROTKB|J9P259	376	ZNF131 "Uncharacterized protei	0.846	0.087	0.454	3.9e-05
UNIPROTKB|F6S103	467	ZNF131 "Uncharacterized protei	0.846	0.070	0.454	5.4e-05
UNIPROTKB|P52739	623	ZNF131 "Zinc finger protein 13	0.846	0.052	0.454	6.2e-05
ZFIN|ZDB-GENE-110914-101	247	si:dkey-82i20.5 "si:dkey-82i20	0.794	0.125	0.516	6.2e-05
ZFIN|ZDB-GENE-040426-1563	558	znf131 "zinc finger protein 13	0.846	0.059	0.454	8.8e-05
UNIPROTKB|F1NF21	340	F1NF21 "Uncharacterized protei	0.794	0.091	0.516	8.9e-05
UNIPROTKB|F1NA20	448	ZFP161 "Zinc finger protein 16	0.794	0.069	0.548	0.00011

ZFIN|ZDB-GENE-080220-12 zgc:174919 "zgc:174919" [Danio rerio (taxid:7955)]

 Score = 106 (42.4 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query:     7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
             ++C WC     +  H+R+H R HTGEKPF CP
Sbjct:   175 HSCSWCGNSFAHQAHLREHERIHTGEKPFTCP 206

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C6B5 E1C6B5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 109 (43.4 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query:     6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
             ++ C +CD    + GH ++H+R+HTGEKPF CP
Sbjct:   295 IHICQYCDKQFDHFGHFKEHLRKHTGEKPFECP 327

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IBA

ZFIN|ZDB-GENE-110914-69 si:ch211-79g12.1 "si:ch211-79g12.1" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query:     7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
             YAC  C    + S H++ H+R HTGEKPF C
Sbjct:    94 YACTQCGKSFIRSSHLKQHMRIHTGEKPFAC 124

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|J9P259 ZNF131 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 105 (42.0 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query:     6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
             ++ C +C+    + GH ++H+R+HTGEKPF CP
Sbjct:   294 IHICQYCEKQFDHFGHFKEHLRKHTGEKPFECP 326

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F6S103 ZNF131 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 105 (42.0 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query:     6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
             ++ C +C+    + GH ++H+R+HTGEKPF CP
Sbjct:   171 IHICQYCEKQFDHFGHFKEHLRKHTGEKPFECP 203

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|P52739 ZNF131 "Zinc finger protein 131" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query:     6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
             ++ C +C+    + GH ++H+R+HTGEKPF CP
Sbjct:   327 IHVCQYCEKQFDHFGHFKEHLRKHTGEKPFECP 359

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IBA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IBA

ZFIN|ZDB-GENE-110914-101 si:dkey-82i20.5 "si:dkey-82i20.5" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 6.2e-05, P = 6.2e-05
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query:     7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
             YAC  C    + S H+ +H+R HTGEKPF C
Sbjct:    94 YACTQCGKSFIRSSHLNEHMRIHTGEKPFTC 124

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1563 znf131 "zinc finger protein 131" [Danio rerio (taxid:7955)]

 Score = 104 (41.7 bits), Expect = 8.8e-05, P = 8.8e-05
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query:     6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
             ++ C +C+    + GH ++H+R+HTGEKPF CP
Sbjct:   324 VHVCEYCEKQFDHFGHFKEHLRKHTGEKPFECP 356

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IBA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1NF21 F1NF21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 101 (40.6 bits), Expect = 8.9e-05, P = 8.9e-05
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query:     7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
             Y C  C Y T+++G+ + H+R HTGEKPF C
Sbjct:   260 YTCEECGYTTVHNGNFKQHLRIHTGEKPFKC 290

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NA20 ZFP161 "Zinc finger protein 161 homolog" [Gallus gallus (taxid:9031)]

 Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query:     7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
             +AC  CD    +  H++DH RRH GEKPFVC
Sbjct:   359 FACHMCDKAFKHKSHLKDHERRHRGEKPFVC 389

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	39
KOG2462|consensus	279		99.7
KOG3623|consensus	1007		99.56
KOG2462|consensus	279		99.49
PHA00616	44	hypothetical protein	99.41
KOG3623|consensus	1007		99.32
PHA02768	55	hypothetical protein; Provisional	99.17
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.95
KOG1074|consensus	958		98.9
KOG3576|consensus	267		98.89
KOG1074|consensus	958		98.87
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.84
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.76
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.7
PHA00733	128	hypothetical protein	98.58
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.44
KOG3576|consensus	267		98.4
smart00355	26	ZnF_C2H2 zinc finger.	98.29
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	98.25
KOG3608|consensus	467		98.06
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.05
PHA00732	79	hypothetical protein	98.05
PRK04860	160	hypothetical protein; Provisional	97.82
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.52
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.35
KOG3608|consensus	467		97.34
PLN03086	567	PRLI-interacting factor K; Provisional	97.28
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.14
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.02
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.85
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.75
PLN03086	567	PRLI-interacting factor K; Provisional	96.46
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.43
KOG3993|consensus	500		95.66
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	95.26
KOG3993|consensus	500		95.03
COG4049	65	Uncharacterized protein containing archaeal-type C	95.01
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	94.04
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	93.57
PF08790	28	zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IP	92.2
KOG2482|consensus	423		91.49
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	91.33
KOG3408|consensus	129		90.32
COG1592	166	Rubrerythrin [Energy production and conversion]	90.23
KOG4167|consensus	907		89.38
COG5048	467	FOG: Zn-finger [General function prediction only]	88.37
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	88.33
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	87.22
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	85.34
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	84.67
COG4957	148	Predicted transcriptional regulator [Transcription	84.54
PF01428	43	zf-AN1: AN1-like Zinc finger; InterPro: IPR000058	84.07
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	83.64
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	82.93
cd00924	97	Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb.	82.74
PLN02294	174	cytochrome c oxidase subunit Vb	81.72
PF09845	131	DUF2072: Zn-ribbon containing protein (DUF2072); I	81.58
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	81.0
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.81

>KOG2462|consensus

Probab=99.70  E-value=1.8e-17  Score=63.68  Aligned_cols=38  Identities=21%  Similarity=0.517  Sum_probs=35.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |+||+||.|..|+++|..+++|+.|+++|.+.|+|+|.
T Consensus       210 HTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~  247 (279)
T KOG2462|consen  210 HTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCP  247 (279)
T ss_pred             ccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCc
Confidence            78999999999999999999999999999999999985

>KOG3623|consensus

Probab=99.56  E-value=1.2e-15  Score=64.69  Aligned_cols=38  Identities=34%  Similarity=0.709  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |+|++||.|..|.++|.++-.|..|.|.|.|||||.|.
T Consensus       917 HsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCd  954 (1007)
T KOG3623|consen  917 HSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCD  954 (1007)
T ss_pred             hcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhh
Confidence            78999999999999999999999999999999999984

>KOG2462|consensus

Probab=99.49  E-value=1.1e-14  Score=56.24  Aligned_cols=34  Identities=41%  Similarity=0.737  Sum_probs=32.1

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      -++.|..|++.|....-|+.|+|+|+|||||.|.
T Consensus       186 l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~  219 (279)
T KOG2462|consen  186 LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCP  219 (279)
T ss_pred             CCcccccccccccchHHhhcccccccCCCCccCC
Confidence            4789999999999999999999999999999996

>PHA00616 hypothetical protein

Probab=99.41  E-value=9.2e-14  Score=41.69  Aligned_cols=33  Identities=15%  Similarity=0.328  Sum_probs=30.9

Q ss_pred             ceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ||.|..|++.|.+.+.+..|++.+++++++.|.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            688999999999999999999999999998775

>KOG3623|consensus

Probab=99.32  E-value=5e-13  Score=57.16  Aligned_cols=35  Identities=37%  Similarity=0.794  Sum_probs=32.8

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      -+.|.|.+|+++|..+-.|..|.|+|.|||||.|+
T Consensus       279 lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCp  313 (1007)
T KOG3623|consen  279 LRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECP  313 (1007)
T ss_pred             hccccccccchhhhhHHHHHhhheeecCCCCcCCc
Confidence            35689999999999999999999999999999996

>PHA02768 hypothetical protein; Provisional

Probab=99.17  E-value=3.3e-11  Score=37.65  Aligned_cols=30  Identities=23%  Similarity=0.449  Sum_probs=25.8

Q ss_pred             ceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      .|.|..|++.|.....|..|++.|+  ++++|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc   34 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKL   34 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccC
Confidence            4789999999999999999999999  34444

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.95  E-value=1.1e-09  Score=29.72  Aligned_cols=19  Identities=58%  Similarity=1.375  Sum_probs=16.6

Q ss_pred             hHHHHhHHhcCCCCccCCC
Q psy4412          21 HMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus        21 ~~~~~~~~~~~~~~~~c~~   39 (39)
                      +|..|++.|++++||.|++
T Consensus         1 ~l~~H~~~H~~~k~~~C~~   19 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPY   19 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCC
Confidence            4788999999999999974

...

>KOG1074|consensus

Probab=98.90  E-value=5.5e-10  Score=48.73  Aligned_cols=33  Identities=15%  Similarity=0.383  Sum_probs=27.4

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |+|++||.|..|+++|..+.+|+.|+.+|...-
T Consensus       628 HtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p  660 (958)
T KOG1074|consen  628 HTGERPFKCKICGRAFTTKGNLKAHMSVHKAKP  660 (958)
T ss_pred             ccCcCccccccccchhccccchhhcccccccCc
Confidence            678889999999999988888888888776553

>KOG3576|consensus

Probab=98.89  E-value=2.2e-10  Score=43.68  Aligned_cols=33  Identities=27%  Similarity=0.646  Sum_probs=23.7

Q ss_pred             ceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      -+-|..|+++|...-+|..|.++|+|.+||+|.
T Consensus       145 r~lct~cgkgfndtfdlkrh~rthtgvrpykc~  177 (267)
T KOG3576|consen  145 RHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCS  177 (267)
T ss_pred             HHHHhhccCcccchhhhhhhhccccCccccchh
Confidence            355667777777777777777777777777774

>KOG1074|consensus

Probab=98.87  E-value=8.3e-10  Score=48.22  Aligned_cols=33  Identities=33%  Similarity=0.715  Sum_probs=28.9

Q ss_pred             eeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      .+|..|.+.|...+.|..|.|.|+||+||+|.+
T Consensus       354 hkCr~CakvfgS~SaLqiHlRSHTGERPfqCnv  386 (958)
T KOG1074|consen  354 HKCRFCAKVFGSDSALQIHLRSHTGERPFQCNV  386 (958)
T ss_pred             chhhhhHhhcCchhhhhhhhhccCCCCCeeecc
Confidence            578899999999999999999999999999864

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.84  E-value=1.1e-09  Score=29.77  Aligned_cols=17  Identities=18%  Similarity=0.360  Sum_probs=15.4

Q ss_pred             CCCCcceeccccccccc
Q psy4412           1 MDPTYLYACLWCDYHTL   17 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~   17 (39)
                      |++++||.|..|++.|.
T Consensus         9 H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    9 HTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HSSSSSEEESSSSEEES
T ss_pred             cCCCCCCCCCCCcCeeC
Confidence            67999999999999885

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.76  E-value=1.3e-08  Score=26.65  Aligned_cols=23  Identities=30%  Similarity=0.746  Sum_probs=20.6

Q ss_pred             eeccccccccccchhHHHHhHHh
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      |.|..|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            57999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.70  E-value=1.4e-08  Score=27.50  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=22.5

Q ss_pred             ceeccccccccccchhHHHHhHHhc
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      |+.|..|++.|.....+..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            5889999999999999999988764

>PHA00733 hypothetical protein

Probab=98.58  E-value=1.1e-07  Score=34.13  Aligned_cols=34  Identities=32%  Similarity=0.557  Sum_probs=27.6

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      +.+||.|..|++.|.....+..|++.+  +.++.|.
T Consensus        70 ~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~  103 (128)
T PHA00733         70 AVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCP  103 (128)
T ss_pred             CCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCC
Confidence            467899999999999999999998865  3456664

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.44  E-value=3.9e-07  Score=23.59  Aligned_cols=23  Identities=26%  Similarity=0.673  Sum_probs=18.7

Q ss_pred             eeccccccccccchhHHHHhHHh
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      |.|..|+..|.....+..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            57999999999999999998765

...

>KOG3576|consensus

Probab=98.40  E-value=1.3e-07  Score=36.43  Aligned_cols=30  Identities=13%  Similarity=0.343  Sum_probs=26.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhc
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      |+|.+||.|..|+++|.++-.|..|.+...
T Consensus       168 htgvrpykc~~c~kaftqrcsleshl~kvh  197 (267)
T KOG3576|consen  168 HTGVRPYKCSLCEKAFTQRCSLESHLKKVH  197 (267)
T ss_pred             ccCccccchhhhhHHHHhhccHHHHHHHHc
Confidence            679999999999999999999988876443

>smart00355 ZnF_C2H2 zinc finger

Probab=98.29  E-value=1.2e-06  Score=22.91  Aligned_cols=24  Identities=25%  Similarity=0.549  Sum_probs=20.6

Q ss_pred             eeccccccccccchhHHHHhHHhc
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      +.|..|++.|.....+..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            468999999999999999988654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.25  E-value=4e-06  Score=26.06  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=23.0

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKP   34 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~   34 (39)
                      .+.|-.|..|+..+.+..+|..|+....+.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            45678999999999999999999988887775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG3608|consensus

Probab=98.06  E-value=4.2e-06  Score=34.67  Aligned_cols=37  Identities=16%  Similarity=0.474  Sum_probs=24.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |+..+|+.|+.|...+...++|..|...|+ +..|.|.
T Consensus       287 Hs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~  323 (467)
T KOG3608|consen  287 HSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCE  323 (467)
T ss_pred             hccCCCccccchhhhhccHHHHHHHHHhcc-ccceecC
Confidence            345677777777777777777777776665 4445553

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.05  E-value=4.9e-06  Score=21.93  Aligned_cols=23  Identities=22%  Similarity=0.570  Sum_probs=20.0

Q ss_pred             eeccccccccccchhHHHHhHHh
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      |.|..|...|.....+..|.+.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57999999999999999998654

>PHA00732 hypothetical protein

Probab=98.05  E-value=6.2e-06  Score=27.62  Aligned_cols=26  Identities=31%  Similarity=0.681  Sum_probs=21.8

Q ss_pred             ceeccccccccccchhHHHHhHH-hcC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRR-HTG   31 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~-~~~   31 (39)
                      ||.|..|++.|.....+..|++. |.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~   27 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL   27 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC
Confidence            57899999999999999999874 543

>PRK04860 hypothetical protein; Provisional

Probab=97.82  E-value=4.2e-05  Score=28.63  Aligned_cols=29  Identities=31%  Similarity=0.599  Sum_probs=24.7

Q ss_pred             ceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      +|.|. |+.   ....+..|.+++.++++|.|.
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~  147 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCR  147 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECC
Confidence            68897 876   566789999999999999985

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.52  E-value=0.00014  Score=18.91  Aligned_cols=22  Identities=36%  Similarity=0.982  Sum_probs=15.8

Q ss_pred             eeccccccccccchhHHHHhHHh
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      |.|..|..... ...+..|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            57889987776 77888888765

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.35  E-value=3.9e-05  Score=20.67  Aligned_cols=22  Identities=18%  Similarity=0.523  Sum_probs=18.2

Q ss_pred             eeccccccccccchhHHHHhHH
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRR   28 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~   28 (39)
                      |.|..|++.|.....+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5799999999999888877653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG3608|consensus

Probab=97.34  E-value=0.00032  Score=29.53  Aligned_cols=33  Identities=39%  Similarity=0.885  Sum_probs=25.7

Q ss_pred             ceeccccccccccchhHHHHhH-HhcCCCCccCC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIR-RHTGEKPFVCP   38 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~c~   38 (39)
                      .|.|..|.-+....++|..|++ -|...+||+|.
T Consensus       263 ~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd  296 (467)
T KOG3608|consen  263 CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCD  296 (467)
T ss_pred             cccccccccCCCChHHHHHHHHhhhccCCCcccc
Confidence            4678888888888888888887 45567899885

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.28  E-value=0.00037  Score=30.66  Aligned_cols=31  Identities=16%  Similarity=0.309  Sum_probs=14.1

Q ss_pred             ceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ++.|. |+..+ ....+..|...+...+++.|.
T Consensus       478 pv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~  508 (567)
T PLN03086        478 PLQCP-CGVVL-EKEQMVQHQASTCPLRLITCR  508 (567)
T ss_pred             CccCC-CCCCc-chhHHHhhhhccCCCCceeCC
Confidence            33444 44322 334444555555555555553

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.14  E-value=0.00056  Score=19.17  Aligned_cols=22  Identities=14%  Similarity=0.409  Sum_probs=18.2

Q ss_pred             ceeccccccccccchhHHHHhH
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      ++.|..|...|.....+..|..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            5789999999998887777764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.02  E-value=0.0018  Score=20.15  Aligned_cols=33  Identities=27%  Similarity=0.735  Sum_probs=21.8

Q ss_pred             ceeccccccccccchhHHHHhHH-hcCC-CCccCCC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRR-HTGE-KPFVCPF   39 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~-~~~~-~~~~c~~   39 (39)
                      .|.|+.|++ ......|..|... |..+ +.+.|++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPi   36 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPI   36 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCC
Confidence            477888998 5556778888654 3332 4567753

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.85  E-value=0.0018  Score=21.84  Aligned_cols=24  Identities=17%  Similarity=0.588  Sum_probs=20.7

Q ss_pred             ceeccccccccccchhHHHHhHHh
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      .+.|..|+..|.....+..|++.+
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCc
Confidence            478999999999999999999865

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.75  E-value=0.0003  Score=29.24  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             CCcceeccccccccccchhHHHHh
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHI   26 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~   26 (39)
                      ..+||.|.+|++.+.....|..|.
T Consensus       395 ~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         395 KDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             cCCceeccccchhhccCccceecc
Confidence            358999999999999988887764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=96.46  E-value=0.0059  Score=27.26  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=27.1

Q ss_pred             CCCcceecccccccccc----------chhHHHHhHHhcCCCCccCC
Q psy4412           2 DPTYLYACLWCDYHTLN----------SGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~----------~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ..++++.|..|+..+..          ...+..|.... +.+++.|.
T Consensus       500 Cp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~  545 (567)
T PLN03086        500 CPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCD  545 (567)
T ss_pred             CCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEcc
Confidence            35788999999988742          24688887774 88888884

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.43  E-value=0.0042  Score=16.51  Aligned_cols=20  Identities=15%  Similarity=0.378  Sum_probs=14.5

Q ss_pred             eeccccccccccchhHHHHhH
Q psy4412           7 YACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      ..|..|+..|. ...+..|..
T Consensus         3 ~~C~~CgR~F~-~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKFN-PDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEEC-HHHHHHHHH
Confidence            46889999994 555777754

>KOG3993|consensus

Probab=95.66  E-value=0.0067  Score=26.39  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.3

Q ss_pred             ceeccccccccccchhHHHHhHHhc
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      -|.|.+|++.|.-..+|..|.|.|.
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHK  319 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHK  319 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccC
Confidence            5899999999999999999988774

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=95.26  E-value=0.0069  Score=23.99  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=20.7

Q ss_pred             CcceeccccccccccchhHHHHhHHhcC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      +..|.|..|++.|.-...+.+|+..-+.
T Consensus        75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~  102 (214)
T PF04959_consen   75 EDKWRCPLCGKLFKGPEFVRKHIFNKHP  102 (214)
T ss_dssp             SEEEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred             CCEECCCCCCcccCChHHHHHHHhhcCH
Confidence            3458999999999999999999875543

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>KOG3993|consensus

Probab=95.03  E-value=0.014  Score=25.53  Aligned_cols=26  Identities=19%  Similarity=0.402  Sum_probs=22.3

Q ss_pred             cceeccccccccccchhHHHHhHHhc
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      .-|.|..|++.|.....|+.|+..|.
T Consensus       355 gi~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  355 GIFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             ceeecHHhhhhhHHHHHHHHhHHhhh
Confidence            46899999999999999999976654

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=95.01  E-value=0.019  Score=18.39  Aligned_cols=25  Identities=12%  Similarity=0.208  Sum_probs=20.7

Q ss_pred             CCcceeccccccccccchhHHHHhH
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      |+.-+.|..|+..|....+...|..
T Consensus        14 GE~~lrCPRC~~~FR~~K~Y~RHVN   38 (65)
T COG4049          14 GEEFLRCPRCGMVFRRRKDYIRHVN   38 (65)
T ss_pred             CceeeeCCchhHHHHHhHHHHHHhh
Confidence            6667899999999988888877754

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=94.04  E-value=0.091  Score=18.56  Aligned_cols=26  Identities=38%  Similarity=0.719  Sum_probs=21.1

Q ss_pred             ceec----cccccccccchhHHHHhHHhcC
Q psy4412           6 LYAC----LWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         6 ~~~c----~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      .|.|    ..|+........+..|.+...+
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            3678    8899988999999999886643

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=93.57  E-value=0.076  Score=19.78  Aligned_cols=23  Identities=30%  Similarity=0.638  Sum_probs=14.4

Q ss_pred             eeccccccccccchhHHHHhHHhcCC
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      ..|.+||+.|..   |..|.+.|.|-
T Consensus        73 i~clecGk~~k~---LkrHL~~~~gl   95 (132)
T PF05443_consen   73 IICLECGKKFKT---LKRHLRTHHGL   95 (132)
T ss_dssp             EE-TBT--EESB---HHHHHHHTT-S
T ss_pred             eEEccCCcccch---HHHHHHHccCC
Confidence            579999998866   57888888654

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.20  E-value=0.04  Score=15.23  Aligned_cols=19  Identities=16%  Similarity=0.494  Sum_probs=11.2

Q ss_pred             eeccccccccccchhHHHHh
Q psy4412           7 YACLWCDYHTLNSGHMRDHI   26 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~   26 (39)
                      +.|..|++.|. ......|.
T Consensus         1 ~sCiDC~~~F~-~~~y~~Ht   19 (28)
T PF08790_consen    1 FSCIDCSKDFD-GDSYKSHT   19 (28)
T ss_dssp             EEETTTTEEEE-GGGTTT--
T ss_pred             CeeecCCCCcC-cCCcCCCC
Confidence            46888999884 33344443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.

>KOG2482|consensus

Probab=91.49  E-value=0.19  Score=21.80  Aligned_cols=23  Identities=22%  Similarity=0.748  Sum_probs=20.3

Q ss_pred             eeccccccccccchhHHHHhHHh
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      +.|.-|.+.|..+..|..|++..
T Consensus       196 ~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  196 LRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             heeeeeccccCCcHHHHHHHHhc
Confidence            57999999999999999998743

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=91.33  E-value=0.2  Score=14.05  Aligned_cols=9  Identities=44%  Similarity=1.173  Sum_probs=4.2

Q ss_pred             eeccccccc
Q psy4412           7 YACLWCDYH   15 (39)
Q Consensus         7 ~~c~~c~~~   15 (39)
                      |.|..|+..
T Consensus         2 ~~C~~CGy~   10 (33)
T cd00350           2 YVCPVCGYI   10 (33)
T ss_pred             EECCCCCCE
Confidence            345555543

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG3408|consensus

Probab=90.32  E-value=0.26  Score=18.32  Aligned_cols=24  Identities=13%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             cceeccccccccccchhHHHHhHH
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRR   28 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~   28 (39)
                      ..|-|..|.+-|.....+..|.++
T Consensus        56 GqfyCi~CaRyFi~~~~l~~H~kt   79 (129)
T KOG3408|consen   56 GQFYCIECARYFIDAKALKTHFKT   79 (129)
T ss_pred             ceeehhhhhhhhcchHHHHHHHhc
Confidence            357899999999999999888664

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=90.23  E-value=0.33  Score=18.87  Aligned_cols=10  Identities=30%  Similarity=1.055  Sum_probs=6.8

Q ss_pred             ceeccccccc
Q psy4412           6 LYACLWCDYH   15 (39)
Q Consensus         6 ~~~c~~c~~~   15 (39)
                      -|.|.+||..
T Consensus       134 ~~vC~vCGy~  143 (166)
T COG1592         134 VWVCPVCGYT  143 (166)
T ss_pred             EEEcCCCCCc
Confidence            3678888753

>KOG4167|consensus

Probab=89.38  E-value=0.08  Score=24.96  Aligned_cols=25  Identities=16%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             ceeccccccccccchhHHHHhHHhc
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      -|.|.+|++-|..-.++..|++.|.
T Consensus       792 iFpCreC~kvF~KiKSrNAHMK~Hr  816 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIKSRNAHMKTHR  816 (907)
T ss_pred             eeehHHHHHHHHHHhhhhHHHHHHH
Confidence            3789999999988888888888775

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=88.37  E-value=0.2  Score=20.92  Aligned_cols=32  Identities=38%  Similarity=0.773  Sum_probs=16.5

Q ss_pred             eeccccccccccchhHHHHhH--HhcCC--CCccCC
Q psy4412           7 YACLWCDYHTLNSGHMRDHIR--RHTGE--KPFVCP   38 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~--~~~~~--~~~~c~   38 (39)
                      +.|..|...+.....+..|.+  .|.++  +++.|.
T Consensus       290 ~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p  325 (467)
T COG5048         290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCP  325 (467)
T ss_pred             CCCccccCCccccccccccccccccccccCCceeee
Confidence            344455555555555555555  45555  555443

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=88.33  E-value=0.29  Score=14.00  Aligned_cols=15  Identities=20%  Similarity=0.151  Sum_probs=10.7

Q ss_pred             ceeccccccccccch
Q psy4412           6 LYACLWCDYHTLNSG   20 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~   20 (39)
                      .|.|..|+..|....
T Consensus         5 ~y~C~~Cg~~fe~~~   19 (41)
T smart00834        5 EYRCEDCGHTFEVLQ   19 (41)
T ss_pred             EEEcCCCCCEEEEEE
Confidence            378999998775443

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=87.22  E-value=0.36  Score=14.30  Aligned_cols=16  Identities=19%  Similarity=0.171  Sum_probs=11.3

Q ss_pred             ceeccccccccccchh
Q psy4412           6 LYACLWCDYHTLNSGH   21 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~   21 (39)
                      .|.|..|+..|.....
T Consensus         5 ey~C~~Cg~~fe~~~~   20 (42)
T PF09723_consen    5 EYRCEECGHEFEVLQS   20 (42)
T ss_pred             EEEeCCCCCEEEEEEE
Confidence            3789999987765443

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=85.34  E-value=0.48  Score=12.72  Aligned_cols=10  Identities=30%  Similarity=0.697  Sum_probs=6.8

Q ss_pred             eccccccccc
Q psy4412           8 ACLWCDYHTL   17 (39)
Q Consensus         8 ~c~~c~~~~~   17 (39)
                      .|..||..|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            5777877664

Several members are annotated as putative helicases.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=84.67  E-value=0.56  Score=14.26  Aligned_cols=15  Identities=20%  Similarity=0.239  Sum_probs=10.4

Q ss_pred             ceeccccccccccch
Q psy4412           6 LYACLWCDYHTLNSG   20 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~   20 (39)
                      -|.|..|+..|....
T Consensus         5 ey~C~~Cg~~fe~~~   19 (52)
T TIGR02605         5 EYRCTACGHRFEVLQ   19 (52)
T ss_pred             EEEeCCCCCEeEEEE
Confidence            367888888775543

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>COG4957 Predicted transcriptional regulator [Transcription]

Probab=84.54  E-value=0.83  Score=17.40  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=17.6

Q ss_pred             eccccccccccchhHHHHhHHhcCCCC
Q psy4412           8 ACLWCDYHTLNSGHMRDHIRRHTGEKP   34 (39)
Q Consensus         8 ~c~~c~~~~~~~~~~~~~~~~~~~~~~   34 (39)
                      .|.++|+.|.   +|..|..+|.+..|
T Consensus        78 icLEDGkkfK---SLKRHL~t~~gmTP  101 (148)
T COG4957          78 ICLEDGKKFK---SLKRHLTTHYGLTP  101 (148)
T ss_pred             EEeccCcchH---HHHHHHhcccCCCH
Confidence            5888888775   48888888776543

>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.07  E-value=0.5  Score=14.00  Aligned_cols=15  Identities=13%  Similarity=0.306  Sum_probs=9.1

Q ss_pred             cceeccccccccccc
Q psy4412           5 YLYACLWCDYHTLNS   19 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~   19 (39)
                      .|+.|..|+..|-..
T Consensus        12 ~~~~C~~C~~~FC~~   26 (43)
T PF01428_consen   12 LPFKCKHCGKSFCLK   26 (43)
T ss_dssp             SHEE-TTTS-EE-TT
T ss_pred             CCeECCCCCcccCcc
Confidence            478899999888643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=83.64  E-value=0.76  Score=13.47  Aligned_cols=14  Identities=14%  Similarity=0.335  Sum_probs=10.9

Q ss_pred             ceeccccccccccc
Q psy4412           6 LYACLWCDYHTLNS   19 (39)
Q Consensus         6 ~~~c~~c~~~~~~~   19 (39)
                      |+.|..|+..|...
T Consensus        12 ~f~C~~C~~~FC~~   25 (39)
T smart00154       12 GFKCRHCGNLFCGE   25 (39)
T ss_pred             CeECCccCCccccc
Confidence            78899998887643

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>smart00614 ZnF_BED BED zinc finger

Probab=82.93  E-value=1.2  Score=13.58  Aligned_cols=21  Identities=29%  Similarity=0.673  Sum_probs=14.8

Q ss_pred             eeccccccccccc-----hhHHHHhH
Q psy4412           7 YACLWCDYHTLNS-----GHMRDHIR   27 (39)
Q Consensus         7 ~~c~~c~~~~~~~-----~~~~~~~~   27 (39)
                      -.|..|++.+...     +.|..|+.
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            4688898877554     46777776

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb

Probab=82.74  E-value=0.96  Score=16.12  Aligned_cols=13  Identities=15%  Similarity=0.026  Sum_probs=10.6

Q ss_pred             cceeccccccccc
Q psy4412           5 YLYACLWCDYHTL   17 (39)
Q Consensus         5 ~~~~c~~c~~~~~   17 (39)
                      .+..|..|+.-|.
T Consensus        78 ~~~rC~eCG~~fk   90 (97)
T cd00924          78 KPKRCPECGHVFK   90 (97)
T ss_pred             CceeCCCCCcEEE
Confidence            5789999998775

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.

>PLN02294 cytochrome c oxidase subunit Vb

Probab=81.72  E-value=1.1  Score=17.68  Aligned_cols=15  Identities=13%  Similarity=0.135  Sum_probs=11.6

Q ss_pred             Ccceecccccccccc
Q psy4412           4 TYLYACLWCDYHTLN   18 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~   18 (39)
                      .+|..|.+|+.-|.-
T Consensus       139 Gkp~RCpeCG~~fkL  153 (174)
T PLN02294        139 GKSFECPVCTQYFEL  153 (174)
T ss_pred             CCceeCCCCCCEEEE
Confidence            468899999987753

>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function

Probab=81.58  E-value=0.72  Score=17.38  Aligned_cols=15  Identities=13%  Similarity=0.175  Sum_probs=10.3

Q ss_pred             ceeccccccccccch
Q psy4412           6 LYACLWCDYHTLNSG   20 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~   20 (39)
                      |+.|..|++.|...+
T Consensus         1 PH~Ct~Cg~~f~dgs   15 (131)
T PF09845_consen    1 PHQCTKCGRVFEDGS   15 (131)
T ss_pred             CcccCcCCCCcCCCc
Confidence            456788888776544

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=81.00  E-value=0.99  Score=11.99  Aligned_cols=9  Identities=22%  Similarity=0.940  Sum_probs=6.3

Q ss_pred             ceecccccc
Q psy4412           6 LYACLWCDY   14 (39)
Q Consensus         6 ~~~c~~c~~   14 (39)
                      .|.|..|++
T Consensus        16 ~f~CPnCG~   24 (24)
T PF07754_consen   16 PFPCPNCGF   24 (24)
T ss_pred             eEeCCCCCC
Confidence            577887763

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.81  E-value=1  Score=18.10  Aligned_cols=19  Identities=11%  Similarity=0.067  Sum_probs=14.0

Q ss_pred             CcceeccccccccccchhH
Q psy4412           4 TYLYACLWCDYHTLNSGHM   22 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~   22 (39)
                      ++...|+.|++.|....-.
T Consensus         3 ~k~~~CPvC~~~F~~~~vr   21 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVR   21 (214)
T ss_pred             CCceECCCCCCeeeeeEEE
Confidence            3567899999988766433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	39
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	8e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	6e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-05
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	2e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	4e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	5e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	9e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-04
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-04
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	8e-04
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	3e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	4e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-04
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	4e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	5e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	6e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	7e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	7e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	9e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	9e-04

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 42.2 bits (100), Expect = 3e-07
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 5/38 (13%)

Query: 7  YACLWCDYHTLN-----SGHMRDHIRRHTGEKPFVCPF 39
          + C W               +  H+RRHTGEKP  C F
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTF 72

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 33.7 bits (78), Expect = 4e-04
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 19  SGHMRDHIRRHTGEKPFVCPF 39
             +++ H+R HTGEKP++C  
Sbjct: 82  LENLKTHLRSHTGEKPYMCEH 102

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 38.6 bits (91), Expect = 1e-06
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
            C  C Y   +   +R H R H  ++PF C
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKC 40

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 33.2 bits (77), Expect = 2e-04
 Identities = 5/32 (15%), Positives = 14/32 (43%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP 38
          + C +C + T    ++  H+++  G+      
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 37.0 bits (86), Expect = 8e-06
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
          S H++ H R HTGEKPF C +
Sbjct: 32 SSHLKAHTRTHTGEKPFSCSW 52

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 37.7 bits (88), Expect = 1e-05
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
             + +HIR HTGEKPF CPF
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPF 95

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 33.8 bits (78), Expect = 3e-04
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 19  SGHMRDHIRRHTGEKPFVCPF 39
           S +++ H R HTGEKPF C F
Sbjct: 105 SENLKIHKRTHTGEKPFKCEF 125

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 36.7 bits (86), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 5  YLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
          +      C      S H++ H+R HTGEKP+ C
Sbjct: 6  HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC 38

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 32.5 bits (75), Expect = 6e-04
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 7  YACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP 38
          Y C W  C +    S  +  H R+HTG +PF C 
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 36.5 bits (85), Expect = 2e-05
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
          S H++ H+R HTGEKP+ C +
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTW 50

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 36.1 bits (84), Expect = 3e-05
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 7  YACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP 38
          Y C W  CD+    S  +  H R+HTG KPF C 
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG 79

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 35.7 bits (83), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 7  YACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP 38
          YAC    CD     S  +  HIR HTG+KPF C 
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 53

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 35.5 bits (83), Expect = 4e-05
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
          + C  C  +   S H+  HIR HTGEKPF C
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 34

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 35.2 bits (82), Expect = 5e-05
 Identities = 5/22 (22%), Positives = 14/22 (63%)

Query: 18 NSGHMRDHIRRHTGEKPFVCPF 39
             H+++H++ H+  + ++C F
Sbjct: 52 FKKHLKEHMKLHSDTRDYICEF 73

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 35.2 bits (82), Expect = 7e-05
 Identities = 11/21 (52%), Positives = 17/21 (80%)

Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
            ++R H+R HTG++P+VCPF
Sbjct: 77 DFNLRTHVRIHTGDRPYVCPF 97

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 34.4 bits (80), Expect = 2e-04
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
          S  ++ H   HTGEKPF C F
Sbjct: 47 SSKLKRHQLVHTGEKPFQCTF 67

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 35.2 bits (82), Expect = 9e-05
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
          + C  C      S H++ H R HTGEKPF C
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 34.4 bits (80), Expect = 2e-04
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 19 SGHMRDHIRRHTGEKPFVC 37
            H++ H R+HTGEKP+ C
Sbjct: 21 LSHLQMHSRKHTGEKPYQC 39

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 34.0 bits (79), Expect = 2e-04
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 19 SGHMRDHIRRHTGEKPFVC 37
          S  ++ H RRHTG KPF C
Sbjct: 51 SDQLKRHQRRHTGVKPFQC 69

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 34.0 bits (79), Expect = 2e-04
 Identities = 13/19 (68%), Positives = 14/19 (73%)

Query: 19 SGHMRDHIRRHTGEKPFVC 37
          S H+  HIR HTGEKPF C
Sbjct: 47 SDHLTTHIRTHTGEKPFAC 65

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 34.0 bits (79), Expect = 2e-04
 Identities = 12/19 (63%), Positives = 14/19 (73%)

Query: 19 SGHMRDHIRRHTGEKPFVC 37
          SG +  HIR HTG+KPF C
Sbjct: 19 SGSLTRHIRIHTGQKPFQC 37

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 33.4 bits (76), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
           AC  C     +  H+  H   H+GEKP+  
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 33.6 bits (78), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
          + C  C Y + NS  +  H+R HTG+     
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 32.4 bits (75), Expect = 8e-04
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
          Y C  CDY   +S  +  H+R H+ E+PF C
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 32.3 bits (74), Expect = 3e-04
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 25 HIRRHTGEKPFVCPF 39
               TGEKPF C +
Sbjct: 3  SGSSGTGEKPFACTW 17

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 32.4 bits (73), Expect = 4e-04
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
          Y C  C         ++ HIR HT  +P+ C
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHC 32

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 32.9 bits (76), Expect = 4e-04
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 20 GHMRDHIRRHTGEKPFVCP 38
          G      R H+GEKP+ C 
Sbjct: 1  GSSGSSGRTHSGEKPYECY 19

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 32.1 bits (74), Expect = 6e-04
 Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGE--KPFVCP 38
          Y C  C      SG M+ HI +   E    F CP
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCP 49

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 32.1 bits (74), Expect = 4e-04
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPFVC 37
          Y C  C+        +  H R HT EKP   
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 31.8 bits (73), Expect = 5e-04
 Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 19 SGHMRDHIRR-HTGEKPFVC 37
            H+  HI++ HT E+P  C
Sbjct: 25 PDHLNGHIKQVHTSERPHKC 44

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 32.1 bits (74), Expect = 6e-04
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 19 SGHMRDHIRRHTGEKPFVCP 38
            H++ H R HT EKP+ C 
Sbjct: 15 QEHLKRHYRSHTNEKPYPCG 34

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 32.2 bits (74), Expect = 6e-04
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 19 SGHMRDHIRRHTGEKPFVCPF 39
             ++ H   HT + P+ CP 
Sbjct: 16 HNQLKVHQFSHTQQLPYECPH 36

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 32.1 bits (74), Expect = 7e-04
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 20 GHMRDHIRRHTGEKPFVC 37
          G      R HTGEKP+ C
Sbjct: 1  GSSGSSGRTHTGEKPYAC 18

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 32.6 bits (74), Expect = 7e-04
 Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 5/41 (12%)

Query: 2  DPTYLYACLWCDYHTLNSG-----HMRDHIRRHTGEKPFVC 37
               + C W +             + +HIR HTGEK    
Sbjct: 53 PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 31.0 bits (71), Expect = 9e-04
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPF 35
          Y C  C    +   H+R H+  HTG  P 
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 30.9 bits (71), Expect = 9e-04
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEKPF 35
          Y C  C     +   ++ H+R HTG  P 
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	39
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.79
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.78
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.78
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.78
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.78
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.78
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.78
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.78
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.77
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.77
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.77
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.77
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.77
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.77
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.77
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.77
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.77
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.77
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.77
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.77
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.77
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.77
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.77
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.77
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.77
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.77
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.77
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.77
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.77
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.77
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.77
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.77
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.77
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.77
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.77
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.77
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.77
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.76
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.76
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.76
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.76
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.76
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.76
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.76
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.76
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.76
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.76
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.76
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.76
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.76
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.76
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.76
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.76
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.76
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.76
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.76
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.76
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.76
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.76
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.76
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.76
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.76
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.76
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.76
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.76
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.76
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.76
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.76
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.76
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.76
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.75
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.75
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.75
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.75
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.75
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.75
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.75
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.75
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.75
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.75
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.75
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.75
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.75
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.75
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.75
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.75
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.74
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.74
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.74
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.74
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.74
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.74
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.74
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.73
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.73
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.73
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.73
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.72
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.71
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.71
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.7
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.67
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.66
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.64
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.63
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.63
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.62
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.61
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.61
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.61
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.61
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.61
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.59
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.59
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.59
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.58
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.57
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.57
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.57
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.56
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.55
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.54
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.54
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.54
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.53
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.53
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.52
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.52
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.52
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.52
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.52
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.5
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.49
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.49
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.49
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	99.49
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.48
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.48
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.47
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.47
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.47
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.46
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.46
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.45
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.45
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.45
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	99.44
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.43
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.43
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	99.42
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.41
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.41
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.4
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.4
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.39
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.39
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.39
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.39
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.38
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	99.37
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.36
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	99.36
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.36
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.35
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	99.34
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.34
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.34
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.34
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	99.33
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.32
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	99.32
1ard_A	29	Yeast transcription factor ADR1; transcription reg	99.31
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.31
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	99.31
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.31
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	99.3
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	99.3
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.3
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.28
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.27
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.27
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.27
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.27
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	99.26
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.26
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.24
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	99.24
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.23
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	99.23
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.23
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.22
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.85
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.21
1paa_A	30	Yeast transcription factor ADR1; transcription reg	99.21
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.21
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	99.21
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.2
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.2
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.2
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.19
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.19
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	99.19
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.17
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.17
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.16
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.15
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.14
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.08
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.07
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.62
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	99.04
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.03
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.03
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.03
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.02
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.0
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	98.99
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.99
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.98
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.94
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.89
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.82
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.75
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.75
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.73
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.68
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.65
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	98.59
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.56
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.21
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.18
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.06
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.35
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.14
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	96.52
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.34
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	95.19
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	95.07
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.01
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.67
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	93.1
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.29
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	88.86
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	88.79
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	87.39
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	87.26
2hqh_E	26	Restin; beta/BETA structure, zinc finger motif, st	86.44
1wys_A	75	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	84.4
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	83.55
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	83.32
2odx_A	80	Cytochrome C oxidase polypeptide IV; all beta-prot	82.4
1v54_F	98	VI, cytochrome C oxidase polypeptide VB; oxidoredu	81.69

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=3.5e-19  Score=52.65  Aligned_cols=39  Identities=13%  Similarity=0.152  Sum_probs=36.8

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            578899999999999999999999999999999999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=5.2e-19  Score=52.83  Aligned_cols=39  Identities=28%  Similarity=0.318  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             cCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.78  E-value=6.7e-19  Score=52.58  Aligned_cols=39  Identities=28%  Similarity=0.292  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.78  E-value=2.9e-19  Score=56.17  Aligned_cols=37  Identities=24%  Similarity=0.527  Sum_probs=34.3

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      .|+||.|..|++.|.....|..|+++|++++||.|.+
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~   37 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPE   37 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTT
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCC
Confidence            3789999999999999999999999999999999964

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.78  E-value=6.4e-19  Score=52.62  Aligned_cols=39  Identities=31%  Similarity=0.332  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.78  E-value=7.7e-19  Score=52.39  Aligned_cols=39  Identities=23%  Similarity=0.212  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.78  E-value=1.1e-18  Score=52.11  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ely_A            7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCC
T ss_pred             CCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=6.9e-19  Score=52.59  Aligned_cols=39  Identities=28%  Similarity=0.249  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=9.6e-19  Score=52.20  Aligned_cols=39  Identities=28%  Similarity=0.390  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|++
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=8.8e-19  Score=51.89  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   43 (44)
T 2emx_A            5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS   43 (44)
T ss_dssp             CSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCC
T ss_pred             cCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=8.9e-19  Score=52.27  Aligned_cols=39  Identities=28%  Similarity=0.294  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|++++||.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytn_A            7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=1.3e-18  Score=51.98  Aligned_cols=39  Identities=28%  Similarity=0.342  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=9.4e-19  Score=52.19  Aligned_cols=39  Identities=31%  Similarity=0.388  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|++++||.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            568899999999999999999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=7.5e-19  Score=52.41  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=7.8e-19  Score=52.44  Aligned_cols=39  Identities=28%  Similarity=0.271  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|+.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=7.5e-19  Score=52.45  Aligned_cols=39  Identities=21%  Similarity=0.210  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            7 GTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=1.2e-18  Score=51.96  Aligned_cols=39  Identities=31%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emm_A            7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSC
T ss_pred             cCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=7.1e-19  Score=52.49  Aligned_cols=39  Identities=28%  Similarity=0.280  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|+++|++++||.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=1.1e-18  Score=52.06  Aligned_cols=39  Identities=21%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytj_A            7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS   45 (46)
T ss_dssp             TSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred             CCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=9.8e-19  Score=52.21  Aligned_cols=39  Identities=23%  Similarity=0.244  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emf_A            7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=7.8e-19  Score=52.37  Aligned_cols=39  Identities=28%  Similarity=0.396  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|++++||.|++
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             cCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=1.3e-18  Score=51.93  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emy_A            7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSC
T ss_pred             CCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=5.9e-19  Score=52.73  Aligned_cols=39  Identities=26%  Similarity=0.305  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=7.1e-19  Score=52.50  Aligned_cols=39  Identities=26%  Similarity=0.295  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|++++||.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ep3_A            7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=8.7e-19  Score=52.30  Aligned_cols=39  Identities=28%  Similarity=0.304  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=1.2e-18  Score=51.98  Aligned_cols=39  Identities=31%  Similarity=0.375  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|++++||.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytk_A            7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCC
T ss_pred             CCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=7.3e-19  Score=52.31  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=9.7e-19  Score=52.19  Aligned_cols=39  Identities=26%  Similarity=0.320  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emh_A            7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=1.2e-18  Score=51.97  Aligned_cols=39  Identities=28%  Similarity=0.319  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoe_A            7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS   45 (46)
T ss_dssp             CCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred             CCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.2e-18  Score=52.00  Aligned_cols=39  Identities=26%  Similarity=0.235  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em7_A            7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTC
T ss_pred             CCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=51.89  Aligned_cols=39  Identities=23%  Similarity=0.277  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2enc_A            7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCC
T ss_pred             CCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.77  E-value=1e-18  Score=52.14  Aligned_cols=39  Identities=26%  Similarity=0.234  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2el4_A            7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS   45 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTT
T ss_pred             CCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.77  E-value=1.2e-18  Score=51.17  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |+++++|.|..|++.|.....|..|+++|+++++|.|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            57889999999999999999999999999999999995

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=1.3e-18  Score=51.95  Aligned_cols=39  Identities=23%  Similarity=0.133  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2elz_A            7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS   45 (46)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred             CCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.77  E-value=1.4e-18  Score=51.90  Aligned_cols=39  Identities=31%  Similarity=0.350  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emk_A            7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCC
T ss_pred             cCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.77  E-value=1.2e-18  Score=52.00  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2yu8_A            7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS   45 (46)
T ss_dssp             CCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCC
T ss_pred             CCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.77  E-value=1.4e-18  Score=51.85  Aligned_cols=39  Identities=26%  Similarity=0.210  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2el6_A            7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS   45 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.6e-18  Score=51.72  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytd_A            7 GSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS   45 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSC
T ss_pred             cCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.3e-18  Score=51.90  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eml_A            7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS   45 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSC
T ss_pred             cCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1e-18  Score=52.12  Aligned_cols=39  Identities=26%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.4e-18  Score=51.84  Aligned_cols=39  Identities=26%  Similarity=0.304  Sum_probs=36.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|.++++|.|..
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             cCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.4e-18  Score=51.83  Aligned_cols=39  Identities=28%  Similarity=0.310  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en6_A            7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=6.7e-19  Score=52.56  Aligned_cols=39  Identities=28%  Similarity=0.292  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|++++||.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.76  E-value=1.3e-18  Score=51.94  Aligned_cols=39  Identities=26%  Similarity=0.291  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ema_A            7 GTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS   45 (46)
T ss_dssp             CTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSC
T ss_pred             CCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.5e-18  Score=51.78  Aligned_cols=39  Identities=28%  Similarity=0.372  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.8e-18  Score=51.55  Aligned_cols=39  Identities=15%  Similarity=0.035  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epw_A            7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred             CCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=9.7e-19  Score=52.23  Aligned_cols=39  Identities=33%  Similarity=0.381  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|++++||.|++
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1e-18  Score=52.12  Aligned_cols=39  Identities=28%  Similarity=0.284  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq0_A            7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS   45 (46)
T ss_dssp             TTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.3e-18  Score=51.94  Aligned_cols=39  Identities=26%  Similarity=0.194  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emp_A            7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCC
T ss_pred             cCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.2e-18  Score=52.04  Aligned_cols=39  Identities=23%  Similarity=0.275  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoo_A            7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS   45 (46)
T ss_dssp             CSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSC
T ss_pred             CCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=51.02  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=35.3

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      |++++||.|..|++.|.....|..|+++|++++||.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            6789999999999999999999999999999999988

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.4e-18  Score=51.83  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep2_A            7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCC
T ss_pred             CCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.3e-18  Score=51.91  Aligned_cols=39  Identities=28%  Similarity=0.275  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ene_A            7 GTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCC
T ss_pred             CCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.76  E-value=1.4e-18  Score=51.84  Aligned_cols=39  Identities=26%  Similarity=0.265  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em0_A            7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCC
Confidence            568899999999999999999999999999999999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.3e-18  Score=51.88  Aligned_cols=39  Identities=28%  Similarity=0.309  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.3e-18  Score=51.87  Aligned_cols=39  Identities=28%  Similarity=0.314  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eq4_A            7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS   45 (46)
T ss_dssp             SSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCC
T ss_pred             CCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.1e-18  Score=52.11  Aligned_cols=39  Identities=26%  Similarity=0.289  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytq_A            7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred             cCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=2.1e-18  Score=51.45  Aligned_cols=39  Identities=15%  Similarity=0.033  Sum_probs=36.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yso_A            7 GSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSS   45 (46)
T ss_dssp             SSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTC
T ss_pred             cCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.7e-18  Score=51.68  Aligned_cols=39  Identities=21%  Similarity=0.196  Sum_probs=36.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoq_A            7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS   45 (46)
T ss_dssp             SSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred             CCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.76  E-value=2.1e-18  Score=51.42  Aligned_cols=39  Identities=26%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em9_A            7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTC
T ss_pred             CCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=2.2e-18  Score=51.44  Aligned_cols=39  Identities=26%  Similarity=0.306  Sum_probs=36.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|..
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999963

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.2e-18  Score=52.04  Aligned_cols=39  Identities=23%  Similarity=0.302  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytm_A            7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS   45 (46)
T ss_dssp             CSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=2.5e-18  Score=51.25  Aligned_cols=39  Identities=31%  Similarity=0.321  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eme_A            7 GSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             TCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=2.6e-18  Score=51.20  Aligned_cols=39  Identities=23%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eov_A            7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS   45 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCC
T ss_pred             CCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.6e-18  Score=51.74  Aligned_cols=39  Identities=26%  Similarity=0.280  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2epz_A            7 GTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.9e-18  Score=51.58  Aligned_cols=39  Identities=26%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em8_A            7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS   45 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCC
T ss_pred             CCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=2.2e-18  Score=51.39  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2en1_A            7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=2.2e-18  Score=50.52  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=35.8

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            57889999999999999999999999999999999994

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=2.2e-18  Score=51.44  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=36.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|+.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            7 GTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999973

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.76  E-value=1.4e-18  Score=51.83  Aligned_cols=39  Identities=26%  Similarity=0.238  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            7 GTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.75  E-value=1.7e-18  Score=51.65  Aligned_cols=39  Identities=23%  Similarity=0.147  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|++++||.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eop_A            7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCC
T ss_pred             cCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence            578899999999999999999999999999999999974

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=51.48  Aligned_cols=39  Identities=21%  Similarity=0.122  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcC-CCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTG-EKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~-~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|++ +++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             cCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5688999999999999999999999999999 99999974

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=2.9e-18  Score=50.74  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=35.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            56889999999999999999999999999999999995

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.75  E-value=1.9e-18  Score=51.58  Aligned_cols=38  Identities=29%  Similarity=0.427  Sum_probs=36.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            57889999999999999999999999999999999996

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.75  E-value=2.4e-18  Score=50.47  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=35.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         6 H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            5688999999999999999999999999999999988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=51.48  Aligned_cols=39  Identities=31%  Similarity=0.303  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em5_A            7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCC
T ss_pred             CCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.75  E-value=1.5e-18  Score=50.92  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=35.2

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            5788999999999999999999999999999999988

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=51.42  Aligned_cols=39  Identities=23%  Similarity=0.094  Sum_probs=36.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en8_A            7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS   45 (46)
T ss_dssp             CCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred             CCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.75  E-value=2.8e-18  Score=50.71  Aligned_cols=38  Identities=24%  Similarity=0.235  Sum_probs=35.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |+++++|.|..|++.|.....|..|+++|+++++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            56889999999999999999999999999999999995

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.75  E-value=2e-18  Score=51.49  Aligned_cols=39  Identities=28%  Similarity=0.267  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=3.3e-18  Score=50.63  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=35.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            7 GHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            56889999999999999999999999999999999995

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.75  E-value=1.5e-18  Score=51.80  Aligned_cols=39  Identities=28%  Similarity=0.290  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytg_A            7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.75  E-value=1.7e-18  Score=51.62  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ytr_A            7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=2.7e-18  Score=50.83  Aligned_cols=38  Identities=18%  Similarity=0.136  Sum_probs=35.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |+++++|.|..|++.|.....|..|+++|+++++|.|.
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            7 GAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            56789999999999999999999999999999999995

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.75  E-value=2.6e-18  Score=51.28  Aligned_cols=38  Identities=21%  Similarity=0.205  Sum_probs=36.0

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            56889999999999999999999999999999999996

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.75  E-value=1.8e-18  Score=51.61  Aligned_cols=39  Identities=23%  Similarity=0.215  Sum_probs=36.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2ysp_A            7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS   45 (46)
T ss_dssp             CSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.74  E-value=3.9e-18  Score=50.70  Aligned_cols=39  Identities=23%  Similarity=0.347  Sum_probs=36.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|++
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~   43 (45)
T 2epq_A            5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS   43 (45)
T ss_dssp             CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCC
T ss_pred             cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcC
Confidence            678999999999999999999999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.74  E-value=2.2e-18  Score=50.96  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=35.8

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            56889999999999999999999999999999999995

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.74  E-value=3.2e-18  Score=51.16  Aligned_cols=39  Identities=28%  Similarity=0.370  Sum_probs=36.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhH-HhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIR-RHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++ .|+++++|.|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~   46 (47)
T 2epx_A            7 GTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS   46 (47)
T ss_dssp             CCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred             cCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence            578899999999999999999999999 999999999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=2.5e-18  Score=50.49  Aligned_cols=37  Identities=24%  Similarity=0.401  Sum_probs=35.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      |++++||.|..|++.|.....|..|++.|+++++|.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             cCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            5688999999999999999999999999999999988

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.74  E-value=1.7e-18  Score=51.71  Aligned_cols=39  Identities=21%  Similarity=0.205  Sum_probs=36.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             SSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.74  E-value=2.2e-18  Score=50.97  Aligned_cols=38  Identities=16%  Similarity=0.225  Sum_probs=35.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            56889999999999999999999999999999999995

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.74  E-value=1.4e-18  Score=51.84  Aligned_cols=39  Identities=26%  Similarity=0.219  Sum_probs=36.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|+++|.++++|.|.+
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS   45 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            568899999999999999999999999999999999974

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.73  E-value=3.8e-18  Score=50.48  Aligned_cols=38  Identities=18%  Similarity=0.150  Sum_probs=35.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            57889999999999999999999999999999999994

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.73  E-value=2.3e-18  Score=50.49  Aligned_cols=37  Identities=30%  Similarity=0.383  Sum_probs=35.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             cCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            5788999999999999999999999999999999988

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.73  E-value=5.4e-18  Score=50.50  Aligned_cols=38  Identities=24%  Similarity=0.249  Sum_probs=36.0

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|++.|.++++|.|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             SCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            56889999999999999999999999999999999996

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.73  E-value=4.1e-18  Score=50.82  Aligned_cols=38  Identities=18%  Similarity=0.200  Sum_probs=35.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|.++++|.|.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             SCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            56889999999999999999999999999999999995

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.72  E-value=1.2e-17  Score=50.19  Aligned_cols=39  Identities=26%  Similarity=0.329  Sum_probs=36.0

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |.++++|.|..|++.|.....|..|+++|+++++|.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGP   45 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCC
Confidence            457889999999999999999999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.71  E-value=2.5e-17  Score=48.74  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=35.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            7 GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            57889999999999999999999999999999999873

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.71  E-value=2e-17  Score=47.92  Aligned_cols=38  Identities=16%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.+.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccceec
Confidence            67899999999999999999999999999999999874

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.70  E-value=3.5e-17  Score=49.04  Aligned_cols=39  Identities=26%  Similarity=0.351  Sum_probs=36.2

Q ss_pred             CCCCcceecc--ccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACL--WCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|.  .|++.|.....|..|+++|+++++|.|.+
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   47 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS   47 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5688999998  89999999999999999999999999974

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.67  E-value=1e-16  Score=51.64  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=33.8

Q ss_pred             CCCcceeccc--cccccccchhHHHHh-HHhcCCCCccCC
Q psy4412           2 DPTYLYACLW--CDYHTLNSGHMRDHI-RRHTGEKPFVCP   38 (39)
Q Consensus         2 ~~~~~~~c~~--c~~~~~~~~~~~~~~-~~~~~~~~~~c~   38 (39)
                      ++++||.|..  |+++|.....|..|+ ++|++++|+.|.
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            5899999976  999999999999997 799999999874

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.66  E-value=2.2e-16  Score=48.42  Aligned_cols=39  Identities=28%  Similarity=0.515  Sum_probs=35.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhH-HhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIR-RHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++ +|.++++|.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~   46 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   46 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCC
Confidence            457899999999999999999999997 999999999964

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=5e-16  Score=49.72  Aligned_cols=39  Identities=33%  Similarity=0.532  Sum_probs=36.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         9 H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~   47 (72)
T 1x6e_A            9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLE   47 (72)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSS
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCC
Confidence            568899999999999999999999999999999999964

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.63  E-value=6.1e-16  Score=51.24  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=34.4

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      ...+++.|..|++.|.....|..|+++|++++||.|.+
T Consensus        24 ~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~   61 (85)
T 2lv2_A           24 ASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKY   61 (85)
T ss_dssp             CCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTT
T ss_pred             CCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCC
Confidence            34678999999999999999999999999999999964

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=8.3e-16  Score=48.95  Aligned_cols=39  Identities=26%  Similarity=0.507  Sum_probs=35.2

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   42 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNY   42 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSS
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCC
Confidence            467889999999999999999999999999999999864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.62  E-value=2e-16  Score=55.57  Aligned_cols=37  Identities=27%  Similarity=0.549  Sum_probs=26.5

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      .|+++|.|..|++.|.....|..|+++|+++++|.|.
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   54 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCR   54 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECS
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCC
Confidence            4666777777777777777777777777777777765

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.61  E-value=1.4e-15  Score=42.86  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=31.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKP   34 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~   34 (39)
                      |++++||.|..|++.|.....|..|++.|.+++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            6789999999999999999999999999998875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=43.56  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKP   34 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~   34 (39)
                      |++++||.|..|++.|.....|..|++.|++++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            6789999999999999999999999999999875

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.61  E-value=6.1e-16  Score=47.37  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=33.3

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCcc
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFV   36 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~   36 (39)
                      |++++||.|..|++.|.....|..|+++|++++||.
T Consensus        19 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A           19 SQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             HTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            467899999999999999999999999999999874

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1e-15  Score=49.44  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=17.8

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      ++++|.|..|++.|.....|..|+++|++++||.|
T Consensus        43 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           43 GEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34445555555555555555555555555555544

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.61  E-value=1.7e-15  Score=42.77  Aligned_cols=34  Identities=15%  Similarity=0.240  Sum_probs=31.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKP   34 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~   34 (39)
                      |++++||.|..|++.|.....|..|++.|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            6789999999999999999999999999998875

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1e-15  Score=49.53  Aligned_cols=39  Identities=21%  Similarity=0.425  Sum_probs=35.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcC---CCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTG---EKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~---~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++.|.+   +++|.|.+
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~   43 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF   43 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTT
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCC
Confidence            6789999999999999999999999999986   89999864

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=46.92  Aligned_cols=37  Identities=32%  Similarity=0.646  Sum_probs=31.3

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   37 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEF   37 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSS
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCC
Confidence            4689999999999999999999999999999999863

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.59  E-value=2.2e-15  Score=43.22  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=33.2

Q ss_pred             CCCCcceecc--ccccccccchhHHHHhHHhcCCCCcc
Q psy4412           1 MDPTYLYACL--WCDYHTLNSGHMRDHIRRHTGEKPFV   36 (39)
Q Consensus         1 h~~~~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~   36 (39)
                      |++++||.|.  .|++.|.....|..|++.|+++++|.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            6789999999  59999999999999999999999873

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=5.7e-16  Score=52.66  Aligned_cols=36  Identities=25%  Similarity=0.571  Sum_probs=25.0

Q ss_pred             CCcceeccccccccccchhHHHH-hHHhcCCCCccCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDH-IRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~-~~~~~~~~~~~c~   38 (39)
                      +++||.|..|++.|.....|..| +++|++++||.|.
T Consensus        47 ~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~   83 (102)
T 2ghf_A           47 LNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT   83 (102)
T ss_dssp             CSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEE
T ss_pred             CCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCC
Confidence            45667777777777777777777 6677777777664

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.57  E-value=9e-16  Score=48.18  Aligned_cols=33  Identities=12%  Similarity=0.168  Sum_probs=30.3

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |++++||.|..|+++|.....|..|+++|++++
T Consensus        27 Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C           27 HLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             HHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             hCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            568999999999999999999999999999875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.57  E-value=7.5e-15  Score=47.11  Aligned_cols=38  Identities=32%  Similarity=0.618  Sum_probs=32.0

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      .++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~   50 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNI   50 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTT
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCC
Confidence            46778889999998888888888888888888888863

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.57  E-value=4.1e-15  Score=41.68  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      +||.|..|++.|.....|..|+++|+++++|.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCCC
Confidence            579999999999999999999999999999853

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.56  E-value=1.1e-15  Score=53.68  Aligned_cols=38  Identities=24%  Similarity=0.400  Sum_probs=29.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|+++++|.|.
T Consensus        45 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   82 (133)
T 2lt7_A           45 HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL   82 (133)
T ss_dssp             HHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEES
T ss_pred             cCCCCCeeCCccCeecccccchhhhccccCCCccccCC
Confidence            34677888888888888888888888888888888775

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=2.5e-15  Score=47.33  Aligned_cols=39  Identities=23%  Similarity=0.457  Sum_probs=34.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHH-h-cCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRR-H-TGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~-~-~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++. | .++++|.|.+
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~   45 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF   45 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTT
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCC
Confidence            4578999999999999999999999988 6 5899999863

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=5.5e-15  Score=47.76  Aligned_cols=39  Identities=18%  Similarity=0.510  Sum_probs=30.3

Q ss_pred             CCCCcceeccc--cccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |+++++|.|..  |++.|.....|..|+++|.++++|.|.+
T Consensus        33 H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   73 (79)
T 2dlk_A           33 HIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   73 (79)
T ss_dssp             GGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             hCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCC
Confidence            34667788887  8888888888888888888888887753

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.7e-14  Score=41.85  Aligned_cols=32  Identities=28%  Similarity=0.496  Sum_probs=29.3

Q ss_pred             CCCCcceeccc--cccccccchhHHHHhHHhcCC
Q psy4412           1 MDPTYLYACLW--CDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         1 h~~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      +++++||.|..  |+++|.....|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            46889999986  999999999999999999886

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.54  E-value=8.9e-16  Score=51.06  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=35.4

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |++++||.|..|++.|.....|..|+++|++++||.|.
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~   57 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAK   57 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccc
Confidence            56789999999999999999999999999999999985

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2e-14  Score=40.63  Aligned_cols=33  Identities=33%  Similarity=0.631  Sum_probs=30.2

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |++++||.|..|++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            578899999999999999999999999998864

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=1.5e-14  Score=46.65  Aligned_cols=38  Identities=34%  Similarity=0.578  Sum_probs=35.0

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      .++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   51 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDE   51 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSS
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCC
Confidence            46789999999999999999999999999999999964

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.5e-14  Score=40.71  Aligned_cols=33  Identities=24%  Similarity=0.544  Sum_probs=30.1

Q ss_pred             CCCCcceeccccccccccc-hhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNS-GHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~-~~~~~~~~~~~~~~   33 (39)
                      |++++||.|..|++.|... ..|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            5788999999999999999 99999999998764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.3e-14  Score=40.57  Aligned_cols=33  Identities=27%  Similarity=0.620  Sum_probs=30.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |++++||.|..|++.|.....|..|++.|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            578899999999999999999999999998764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.8e-14  Score=40.82  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.0

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |++++||.|..|++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            568899999999999999999999999998764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.6e-14  Score=47.94  Aligned_cols=33  Identities=27%  Similarity=0.185  Sum_probs=30.9

Q ss_pred             eeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |.|..|++.|.....|..|+++|+++++|.|..
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   95 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKSGPSSG   95 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSCC
T ss_pred             cCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            899999999999999999999999999999963

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=3.3e-14  Score=40.18  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |+++++|.|..|++.|.....|..|+++|++++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            568899999999999999999999999998874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=5.1e-14  Score=45.43  Aligned_cols=39  Identities=33%  Similarity=0.622  Sum_probs=33.8

Q ss_pred             CCCCcceeccccccccccchhHHHHhH-HhcCC-CCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIR-RHTGE-KPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~-~~~~~-~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|..|++ .|.++ ++|.|.+
T Consensus        10 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~   50 (77)
T 2ct1_A           10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPH   50 (77)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSS
T ss_pred             cCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCC
Confidence            568899999999999999999999997 67764 8999863

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.49  E-value=2.4e-14  Score=42.98  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             CCCCcceeccccccccccchhHHHHhH-HhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIR-RHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~-~~~~~~   33 (39)
                      |++++||.|..|++.|.....|..|++ +|+++.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            688999999999999999999999999 898764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=6.4e-14  Score=39.63  Aligned_cols=33  Identities=24%  Similarity=0.476  Sum_probs=29.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |++++||.|..|++.|.....|..|+++|++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            467899999999999999999999999998864

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=3.6e-14  Score=43.92  Aligned_cols=35  Identities=31%  Similarity=0.687  Sum_probs=30.6

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      +||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   35 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL   35 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTT
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCC
Confidence            47889999999999999999999999999998863

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=99.49  E-value=1.8e-14  Score=41.41  Aligned_cols=31  Identities=16%  Similarity=0.422  Sum_probs=27.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      +.+++||.|..|+++|...+.|..|+       ||.|.
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~-------py~C~   33 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ-------AYYCS   33 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH-------HHTST
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC-------CeECc
Confidence            35899999999999999999999997       66664

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.48  E-value=3.4e-14  Score=45.57  Aligned_cols=35  Identities=29%  Similarity=0.582  Sum_probs=32.4

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCc
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPF   35 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~   35 (39)
                      |+++++|.|..|++.|.....|..|++.|++++||
T Consensus        40 H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           40 HTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             HCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            45788999999999999999999999999999986

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.48  E-value=6.5e-14  Score=39.79  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=29.2

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      |++++||.|..|++.|.....|..|++.|.++
T Consensus         6 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            6 STGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            57889999999999999999999999998764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=1.5e-14  Score=48.62  Aligned_cols=36  Identities=14%  Similarity=0.289  Sum_probs=29.6

Q ss_pred             CCcceecccccccc-ccchhHHHHhHHhcCCCCccCCC
Q psy4412           3 PTYLYACLWCDYHT-LNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         3 ~~~~~~c~~c~~~~-~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      ++++|.|..|++.| .....|..|++.| ++++|.|.+
T Consensus        31 ~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~   67 (96)
T 2ctd_A           31 DKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHH   67 (96)
T ss_dssp             HTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSS
T ss_pred             CCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCC
Confidence            45678888888888 8888888888888 888888853

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=6.5e-15  Score=49.43  Aligned_cols=38  Identities=13%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             CCCCcceeccccccccc-cchhHHHHhHHhcC-CCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTL-NSGHMRDHIRRHTG-EKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~-~~~~~~~~~~~~~~-~~~~~c~   38 (39)
                      |+++++|.|..|++.|. ....|..|++.|.+ +++|.|.
T Consensus        19 h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~   58 (98)
T 2gqj_A           19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQ   58 (98)
T ss_dssp             TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCS
T ss_pred             hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECC
Confidence            45677888888888888 88888888888877 7788775

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=7.3e-14  Score=39.84  Aligned_cols=32  Identities=25%  Similarity=0.610  Sum_probs=29.2

Q ss_pred             CCCCcceeccccccccccchhHHHH-hHHhcCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDH-IRRHTGE   32 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~-~~~~~~~   32 (39)
                      |++++||.|..|++.|.....|..| ++.|+++
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            6789999999999999999999999 8888764

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.46  E-value=2.2e-14  Score=44.94  Aligned_cols=36  Identities=14%  Similarity=0.212  Sum_probs=31.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |++++||.|..|++.|.....|.   +.|+++++|.|.+
T Consensus         9 H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~   44 (62)
T 1vd4_A            9 STNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTF   44 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSS
T ss_pred             cCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCC
Confidence            57899999999999999887776   7899999999963

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=1.6e-13  Score=43.79  Aligned_cols=39  Identities=41%  Similarity=0.724  Sum_probs=35.0

Q ss_pred             CCCCcceecc--ccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           1 MDPTYLYACL--WCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      +.++++|.|.  .|++.|.....|..|++.|.++++|.|.+
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~   54 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI   54 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTT
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCC
Confidence            3578899997  59999999999999999999999999964

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.45  E-value=1.3e-13  Score=42.27  Aligned_cols=33  Identities=30%  Similarity=0.683  Sum_probs=25.7

Q ss_pred             ceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ||.|..|++.|.....|..|++.|.++++|.|.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   33 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCT   33 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCC
Confidence            567778888888878888888888887777775

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.45  E-value=1.1e-13  Score=45.50  Aligned_cols=36  Identities=42%  Similarity=0.788  Sum_probs=32.7

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      ++||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   36 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI   36 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTT
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCC
Confidence            478999999999999999999999999999999863

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=1.3e-13  Score=46.89  Aligned_cols=38  Identities=21%  Similarity=0.458  Sum_probs=33.5

Q ss_pred             CCCcceeccccccccccchhHHHHhH-Hh---cCCCCccCCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIR-RH---TGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~-~~---~~~~~~~c~~   39 (39)
                      +|++||.|..|++.|.....|..|++ .|   .++++|.|.+
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~   55 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVE   55 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETT
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCC
Confidence            47889999999999999999999997 58   5689999863

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=99.44  E-value=1.5e-13  Score=39.17  Aligned_cols=33  Identities=30%  Similarity=0.471  Sum_probs=29.7

Q ss_pred             CCCCcceecc--ccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACL--WCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |++++||.|.  .|++.|.....|..|+++|++++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            5788999999  49999999999999999998864

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=3.5e-13  Score=45.67  Aligned_cols=37  Identities=24%  Similarity=0.539  Sum_probs=20.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |+++++|.| .|++.|.....|..|++.|.++++|.|.
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~   41 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCG   41 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECT
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCC
Confidence            344555555 5555555555555555555555555553

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.43  E-value=3.1e-13  Score=44.84  Aligned_cols=36  Identities=36%  Similarity=0.808  Sum_probs=20.0

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ++++|.|..|++.|.....|..|++.|.++++|.|.
T Consensus        33 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   68 (96)
T 2dmd_A           33 GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ   68 (96)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECS
T ss_pred             CCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCC
Confidence            444555555555555555555555555555555553

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.42  E-value=3.5e-13  Score=42.96  Aligned_cols=33  Identities=15%  Similarity=0.311  Sum_probs=30.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      +.+++||.|..|++.|.....|..|+++|+++.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~   40 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS   40 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc
Confidence            457899999999999999999999999999864

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.41  E-value=6.8e-13  Score=42.26  Aligned_cols=36  Identities=39%  Similarity=0.754  Sum_probs=33.4

Q ss_pred             CCcceeccc--cccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ..++|.|..  |++.|.....|..|++.|.++++|.|.
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   51 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS   51 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECC
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCC
Confidence            567899988  999999999999999999999999995

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.41  E-value=2.5e-13  Score=45.77  Aligned_cols=33  Identities=39%  Similarity=0.711  Sum_probs=14.4

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      ++|.|..|++.|.....|..|++.|.++++|.|
T Consensus        44 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   76 (106)
T 2ee8_A           44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC   76 (106)
T ss_dssp             CCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSC
T ss_pred             CCcCCCCccchhCCHHHHHHHHHHhCCCCCeEC
Confidence            344444444444444444444444444444444

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.40  E-value=1.4e-13  Score=44.53  Aligned_cols=38  Identities=34%  Similarity=0.652  Sum_probs=32.0

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      .++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus        25 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   62 (82)
T 2kmk_A           25 SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV   62 (82)
T ss_dssp             HTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTT
T ss_pred             CCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCC
Confidence            35678889999999988888999999998888888863

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.40  E-value=1.6e-13  Score=45.09  Aligned_cols=36  Identities=42%  Similarity=0.769  Sum_probs=24.9

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ++++|.|..|++.|.....|..|++.|.++++|.|.
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   66 (90)
T 1a1h_A           31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD   66 (90)
T ss_dssp             CCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECT
T ss_pred             CCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCC
Confidence            455677777777777777777777777777777664

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=8.5e-13  Score=43.02  Aligned_cols=38  Identities=26%  Similarity=0.456  Sum_probs=22.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCC----CCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGE----KPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~----~~~~c~   38 (39)
                      |+++++|.|..|++.|.....|..|++.+...    ++|.|.
T Consensus        10 H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~   51 (86)
T 1x6h_A           10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS   51 (86)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECS
T ss_pred             ecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECC
Confidence            34556666666666666666666666554443    456554

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.39  E-value=1e-12  Score=43.50  Aligned_cols=35  Identities=31%  Similarity=0.537  Sum_probs=16.7

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      ++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   38 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSC   38 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEEC
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcC
Confidence            34444444444444444444444444444444444

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.39  E-value=8.7e-13  Score=45.25  Aligned_cols=38  Identities=26%  Similarity=0.543  Sum_probs=32.4

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      .++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   99 (124)
T 2dlq_A           62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS   99 (124)
T ss_dssp             SCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSS
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCC
Confidence            45678899999999999999999999999999998863

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=3.8e-13  Score=45.58  Aligned_cols=38  Identities=29%  Similarity=0.508  Sum_probs=34.6

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      .++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus        33 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   70 (110)
T 2csh_A           33 LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI   70 (110)
T ss_dssp             SCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSS
T ss_pred             CCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCC
Confidence            46789999999999999999999999999999999863

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.38  E-value=1.2e-12  Score=43.36  Aligned_cols=39  Identities=28%  Similarity=0.623  Sum_probs=35.2

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCC--CCccCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGE--KPFVCPF   39 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~--~~~~c~~   39 (39)
                      |.++++|.|..|++.|.....|..|++.|.++  ++|.|.+
T Consensus        30 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~   70 (95)
T 2yt9_A           30 HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS   70 (95)
T ss_dssp             SCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSS
T ss_pred             cCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCC
Confidence            45788999999999999999999999999987  8999863

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=99.37  E-value=3.5e-13  Score=40.20  Aligned_cols=33  Identities=24%  Similarity=0.468  Sum_probs=29.4

Q ss_pred             CCCCcceecc--ccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACL--WCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |++++||.|.  .|++.|.....|..|+++|++++
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4678999996  79999999999999999999874

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.36  E-value=1.3e-12  Score=43.31  Aligned_cols=38  Identities=26%  Similarity=0.499  Sum_probs=35.0

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      .++++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   41 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKT   41 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCC
Confidence            46789999999999999999999999999999999863

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=99.36  E-value=6.2e-15  Score=41.04  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=28.9

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCCCc
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEKPF   35 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~   35 (39)
                      +||.|..|++.|.....|..|+++|+++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4789999999999999999999999999987

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.36  E-value=4.2e-13  Score=47.58  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             CCCCcceeccc--cccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |+++++|.|..  |++.|.....|..|+++|+++++|.|.
T Consensus       115 h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          115 HTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             TCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             hCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            34555666664  666666666666666666666666664

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=1.1e-12  Score=41.31  Aligned_cols=34  Identities=18%  Similarity=0.453  Sum_probs=30.1

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      +++||.|..|++.|. ...|..|+++ .+++||.|.
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~   40 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACP   40 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECT
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCC
Confidence            567899999999999 8889999988 889999886

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=99.34  E-value=1.4e-12  Score=35.21  Aligned_cols=30  Identities=20%  Similarity=0.414  Sum_probs=27.1

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      ++||.|..|++.|.....|..|++.|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            478999999999999999999999998764

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.34  E-value=5e-13  Score=48.62  Aligned_cols=36  Identities=36%  Similarity=0.713  Sum_probs=24.6

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ++++|.|..|++.|.....|..|++.|.++++|.|.
T Consensus       130 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~  165 (190)
T 2i13_A          130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP  165 (190)
T ss_dssp             CCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECT
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECC
Confidence            456667777777777767777777777777777664

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.34  E-value=2.2e-13  Score=47.25  Aligned_cols=36  Identities=28%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      ++++||.|..|++.|.....|..|+++|  +++|.|.+
T Consensus        70 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~  105 (129)
T 2wbt_A           70 KAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPV  105 (129)
T ss_dssp             HHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTT
T ss_pred             CCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCC
Confidence            4568999999999999999999999998  88998863

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.34  E-value=5.9e-13  Score=45.45  Aligned_cols=35  Identities=40%  Similarity=0.787  Sum_probs=25.6

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      ++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   97 (119)
T 2jp9_A           63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC   97 (119)
T ss_dssp             CCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEEC
T ss_pred             CCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeC
Confidence            45667777777777777777777777777777776

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=99.33  E-value=1.9e-12  Score=34.79  Aligned_cols=29  Identities=34%  Similarity=0.592  Sum_probs=26.4

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      +||.|..|++.|.....|..|++.|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            57999999999999999999999998764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.32  E-value=3.1e-12  Score=41.89  Aligned_cols=38  Identities=32%  Similarity=0.672  Sum_probs=30.3

Q ss_pred             CCCCcceecc--ccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACL--WCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |.++++|.|.  .|++.|.....|..|++.|.++++|.|.
T Consensus        30 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   69 (89)
T 2wbs_A           30 HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ   69 (89)
T ss_dssp             SCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECS
T ss_pred             cCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCC
Confidence            4566788886  5888888888888888888888888875

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=99.32  E-value=3.5e-12  Score=35.04  Aligned_cols=30  Identities=20%  Similarity=0.378  Sum_probs=27.1

Q ss_pred             Ccceecc--ccccccccchhHHHHhHHhcCCC
Q psy4412           4 TYLYACL--WCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         4 ~~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      ++||.|.  .|++.|.....|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4689999  89999999999999999998864

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=99.31  E-value=3.4e-12  Score=34.23  Aligned_cols=29  Identities=31%  Similarity=0.567  Sum_probs=26.3

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      +||.|..|++.|.....|..|++.|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47899999999999999999999998764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.31  E-value=5.4e-12  Score=43.27  Aligned_cols=37  Identities=38%  Similarity=0.654  Sum_probs=30.5

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      +++++|.|..|++.|.....|..|++.|.++++|.|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   39 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECP   39 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCT
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECC
Confidence            4677888888888888888888888888888888875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=99.31  E-value=2.4e-12  Score=34.50  Aligned_cols=29  Identities=34%  Similarity=0.612  Sum_probs=26.4

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47899999999999999999999998864

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.31  E-value=3.7e-12  Score=42.88  Aligned_cols=37  Identities=14%  Similarity=0.117  Sum_probs=34.0

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      |.++++|.|..|++.|.....|..|++.|.++++|.+
T Consensus        68 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           68 HSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             SCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             hCCCCCeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            4678899999999999999999999999999999865

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=99.30  E-value=2.8e-12  Score=34.32  Aligned_cols=29  Identities=21%  Similarity=0.457  Sum_probs=26.3

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47899999999999999999999998764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=99.30  E-value=4.9e-12  Score=34.05  Aligned_cols=30  Identities=20%  Similarity=0.721  Sum_probs=26.9

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEKP   34 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~   34 (39)
                      +||.|..|++.|.....|..|++.|.++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            478999999999999999999999988754

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.30  E-value=2.1e-12  Score=43.64  Aligned_cols=38  Identities=16%  Similarity=0.017  Sum_probs=30.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhH-HhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIR-RHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~c~   38 (39)
                      |+++++|.|..|++.|.....|..|++ .|.++++|.+.
T Consensus        64 H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            456788888888888888888888886 88888888763

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=1e-11  Score=39.99  Aligned_cols=38  Identities=24%  Similarity=0.449  Sum_probs=34.2

Q ss_pred             CCCcceeccc--cccccccchhHHHHhH-HhcCCCCccCCC
Q psy4412           2 DPTYLYACLW--CDYHTLNSGHMRDHIR-RHTGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~--c~~~~~~~~~~~~~~~-~~~~~~~~~c~~   39 (39)
                      +++++|.|..  |++.|.....|..|++ .|.++++|.|.+
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~   43 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPE   43 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCC
Confidence            5778999987  9999999999999999 799999999863

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=5.1e-12  Score=40.05  Aligned_cols=36  Identities=14%  Similarity=0.439  Sum_probs=32.4

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCcc
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFV   36 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~   36 (39)
                      |+++++|.|..|++.|.....|..|++.+.++++..
T Consensus        32 H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A           32 HCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             GCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred             cCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence            467889999999999999999999999999988753

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.27  E-value=6.8e-12  Score=41.78  Aligned_cols=37  Identities=38%  Similarity=0.759  Sum_probs=24.7

Q ss_pred             CCCcceecc--ccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           2 DPTYLYACL--WCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         2 ~~~~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      .++++|.|.  .|++.|.....|..|++.|.++++|.|.
T Consensus        41 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   79 (100)
T 2ebt_A           41 TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG   79 (100)
T ss_dssp             SCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCS
T ss_pred             CCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECC
Confidence            345666674  4777777777777777777777777664

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.27  E-value=8.6e-12  Score=42.87  Aligned_cols=36  Identities=31%  Similarity=0.731  Sum_probs=22.2

Q ss_pred             CCCcceeccc--cccccccchhHHHHhHHhcCCCCccC
Q psy4412           2 DPTYLYACLW--CDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         2 ~~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      .++++|.|..  |++.|.....|..|++.|.++++|.|
T Consensus        58 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (124)
T 1ubd_C           58 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC   95 (124)
T ss_dssp             SCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCC
T ss_pred             CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceEC
Confidence            4455666653  66666666666666666666666665

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.27  E-value=5.7e-12  Score=38.49  Aligned_cols=33  Identities=18%  Similarity=0.558  Sum_probs=30.1

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |+++++|.|..|++.|.....|..|+++|.+++
T Consensus        24 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A           24 HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             TSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            567889999999999999999999999998875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=99.26  E-value=4.9e-12  Score=34.54  Aligned_cols=29  Identities=34%  Similarity=0.673  Sum_probs=26.1

Q ss_pred             cceecc--ccccccccchhHHHHhHHhcCCC
Q psy4412           5 YLYACL--WCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      +||.|.  .|++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            478998  89999999999999999998864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.26  E-value=6.6e-12  Score=44.42  Aligned_cols=37  Identities=32%  Similarity=0.612  Sum_probs=23.0

Q ss_pred             CCCcceeccc--cccccccchhHHHHh-HHhcCCCCccCC
Q psy4412           2 DPTYLYACLW--CDYHTLNSGHMRDHI-RRHTGEKPFVCP   38 (39)
Q Consensus         2 ~~~~~~~c~~--c~~~~~~~~~~~~~~-~~~~~~~~~~c~   38 (39)
                      +++++|.|..  |++.|.....|..|+ +.|.++++|.|.
T Consensus        93 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~  132 (155)
T 2gli_A           93 TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK  132 (155)
T ss_dssp             TTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECC
T ss_pred             CCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCC
Confidence            4555666665  666666666666665 566666666664

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.24  E-value=3.4e-12  Score=45.24  Aligned_cols=36  Identities=36%  Similarity=0.693  Sum_probs=25.1

Q ss_pred             CCcceeccc--cccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ++++|.|..  |++.|.....|..|++.|.++++|.|.
T Consensus        87 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~  124 (155)
T 2rpc_A           87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE  124 (155)
T ss_dssp             CCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCS
T ss_pred             CCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCC
Confidence            456677766  777777777777777777777777664

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=99.24  E-value=9.4e-12  Score=32.99  Aligned_cols=27  Identities=22%  Similarity=0.509  Sum_probs=24.2

Q ss_pred             CcceeccccccccccchhHHHHhHHhc
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      ++||.|..|++.|.....|..|++.|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999998764

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.23  E-value=1.2e-11  Score=40.56  Aligned_cols=37  Identities=46%  Similarity=0.800  Sum_probs=32.4

Q ss_pred             CCcceecc--ccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           3 PTYLYACL--WCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         3 ~~~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      +++||.|.  .|++.|.....|..|++.|.++++|.|.+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   39 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI   39 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCC
Confidence            46899998  69999999999999999999999999863

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=99.23  E-value=8e-12  Score=33.32  Aligned_cols=28  Identities=32%  Similarity=0.495  Sum_probs=24.9

Q ss_pred             CcceeccccccccccchhHHHHhHHhcC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      ++||.|..|++.|.....|..|++.|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4689999999999999999999988754

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=8.6e-14  Score=44.24  Aligned_cols=36  Identities=11%  Similarity=0.094  Sum_probs=30.6

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      +++|.|..|++.|.....|..|++.|.++++|.|.+
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~   72 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSS   72 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCC
Confidence            457788888888888888999999999999999974

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.86  E-value=1e-12  Score=35.42  Aligned_cols=29  Identities=31%  Similarity=0.595  Sum_probs=26.0

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      +||.|..|++.|.....|..|++.|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47899999999999999999999988764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.22  E-value=1.7e-11  Score=42.11  Aligned_cols=36  Identities=33%  Similarity=0.616  Sum_probs=30.3

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      +.++|.|..|++.|.....|..|++.|.++++|.|.
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   66 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT   66 (124)
T ss_dssp             SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCC
Confidence            456788888888888888888888888888888885

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.85  E-value=1.1e-12  Score=35.47  Aligned_cols=30  Identities=37%  Similarity=0.783  Sum_probs=26.6

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      ++||.|..|++.|.....|..|++.|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            468999999999999999999999988763

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.21  E-value=6.5e-12  Score=45.71  Aligned_cols=36  Identities=44%  Similarity=0.804  Sum_probs=23.8

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ++++|.|..|++.|.....|..|++.|.++++|.|.
T Consensus       102 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  137 (190)
T 2i13_A          102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP  137 (190)
T ss_dssp             TCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECT
T ss_pred             CCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECC
Confidence            455666666666666666666666666666666664

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=99.21  E-value=1.2e-11  Score=33.35  Aligned_cols=29  Identities=24%  Similarity=0.422  Sum_probs=25.7

Q ss_pred             cceeccccccccccchhHHHH-hHHhcCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDH-IRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~-~~~~~~~~   33 (39)
                      +||.|..|++.|.....|..| ++.|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            478999999999999999999 78888764

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.21  E-value=1.6e-11  Score=39.78  Aligned_cols=33  Identities=27%  Similarity=0.634  Sum_probs=21.8

Q ss_pred             ceec--cccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           6 LYAC--LWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         6 ~~~c--~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ||.|  ..|++.|.....|..|++.|.++++|.|.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   35 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP   35 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCC
Confidence            4566  66666666666666666666666666664

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=99.21  E-value=7.5e-12  Score=33.30  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=24.0

Q ss_pred             CcceeccccccccccchhHHHHhHHhc
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      ++||.|..|++.|.....|..|++.|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999988763

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.20  E-value=2.7e-11  Score=41.30  Aligned_cols=37  Identities=32%  Similarity=0.802  Sum_probs=21.9

Q ss_pred             CCCcceeccc--cccccccchhHHHHhHHhcCCCCccCC
Q psy4412           2 DPTYLYACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         2 ~~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      +++++|.|..  |++.|.....|..|++.|.++++|.|.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   40 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCD   40 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECC
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCC
Confidence            3455666654  666666666666666666666666554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.20  E-value=2.1e-11  Score=39.36  Aligned_cols=34  Identities=21%  Similarity=0.610  Sum_probs=31.5

Q ss_pred             ceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      ||.|..|++.|.....|..|++.|.++++|.|.+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   34 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY   34 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSS
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCc
Confidence            6889999999999999999999999999999863

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.20  E-value=2e-11  Score=40.98  Aligned_cols=35  Identities=14%  Similarity=0.273  Sum_probs=30.3

Q ss_pred             CCcceeccccccccccchhHHHH-hHHhcCCCCccC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDH-IRRHTGEKPFVC   37 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~-~~~~~~~~~~~c   37 (39)
                      ++++|.|..|++.|.....|..| +++|+++..|.+
T Consensus        59 ~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           59 KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSCSC
T ss_pred             CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCCCC
Confidence            67899999999999999999999 889987655544

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.19  E-value=2e-11  Score=40.40  Aligned_cols=33  Identities=21%  Similarity=0.536  Sum_probs=29.2

Q ss_pred             CCCCcceeccccccccccchhHHHHh-HHhcCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHI-RRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~-~~~~~~~   33 (39)
                      |++++||.|..|++.|.....|..|+ +.|++|.
T Consensus        51 H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           51 LHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             TSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             ccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            57899999999999999999999996 5787764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=4.7e-11  Score=40.67  Aligned_cols=36  Identities=11%  Similarity=0.152  Sum_probs=29.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHH--hcCCCCcc
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRR--HTGEKPFV   36 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~--~~~~~~~~   36 (39)
                      |++++||.|..|++.|.....|..|++.  +.+++++.
T Consensus        14 H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~   51 (115)
T 2dmi_A           14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHE   51 (115)
T ss_dssp             CCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCC
T ss_pred             eCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCc
Confidence            5678899999999999999999999988  66666543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=99.19  E-value=2e-11  Score=32.23  Aligned_cols=27  Identities=22%  Similarity=0.518  Sum_probs=23.3

Q ss_pred             ceeccccccccccchhHHHHhHHhcCC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      ||.|..|++.|.....|..|++.|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            578999999999999999999988764

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.17  E-value=2e-11  Score=41.21  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=18.9

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      +++++|.|..|++.|.....|..|++.|  +++|.|
T Consensus        12 ~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C   45 (107)
T 1wjp_A           12 ENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVC   45 (107)
T ss_dssp             CCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccC
Confidence            3455566666666666655565555554  234444

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.17  E-value=9e-11  Score=38.16  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=32.2

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ++|.|..|++.|.....|..|++.+.+++++.|.
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~   79 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGE   79 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCC
T ss_pred             cceECCCCCChhCCHHHHHHHHHHccCCCCcccC
Confidence            7899999999999999999999999999999885

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.16  E-value=6.8e-11  Score=43.06  Aligned_cols=36  Identities=25%  Similarity=0.556  Sum_probs=29.9

Q ss_pred             CCcceec--cccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYAC--LWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c--~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ++++|.|  ..|++.|.....|..|++.|.++++|.|.
T Consensus       101 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~  138 (190)
T 1tf6_A          101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP  138 (190)
T ss_dssp             TTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCC
T ss_pred             CcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCC
Confidence            4567888  77888888888888888888888888885

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.15  E-value=3.4e-11  Score=38.34  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKP   34 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~   34 (39)
                      |.+++||.|..|++.|.....|..|++.|+++.+
T Consensus        37 h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A           37 HTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             GGCSCCEECSSSCCEESSHHHHHHHHHHHHSSSS
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            4578899999999999999999999999987643

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.14  E-value=2.5e-11  Score=42.93  Aligned_cols=36  Identities=31%  Similarity=0.691  Sum_probs=24.7

Q ss_pred             CCcceeccc--cccccccchhHHHHhHHhcCCCCccCC
Q psy4412           3 PTYLYACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         3 ~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ++++|.|..  |++.|.....|..|++.|.++++|.|.
T Consensus        64 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~  101 (155)
T 2gli_A           64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE  101 (155)
T ss_dssp             CCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECC
T ss_pred             CCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCC
Confidence            456667763  777777777777777777777777665

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=9.8e-12  Score=41.66  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=30.3

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCCCCcc
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFV   36 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~   36 (39)
                      +++|.|..|++.|.....|..|++.|+++++..
T Consensus        52 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A           52 QDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             HHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            678999999999999999999999999998754

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.07  E-value=5.2e-11  Score=43.35  Aligned_cols=34  Identities=32%  Similarity=0.587  Sum_probs=16.5

Q ss_pred             Ccceec--cccccccccchhHHHHhHHhcCCCCccC
Q psy4412           4 TYLYAC--LWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         4 ~~~~~c--~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      +++|.|  ..|++.|.....|..|++.|.++++|.|
T Consensus        40 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C   75 (190)
T 1tf6_A           40 EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC   75 (190)
T ss_dssp             CCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEEC
T ss_pred             CCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeC
Confidence            344444  4455555544455555554444444444

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.62  E-value=2e-11  Score=32.07  Aligned_cols=25  Identities=32%  Similarity=0.674  Sum_probs=22.6

Q ss_pred             cceeccccccccccchhHHHHhHHh
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      +||.|..|++.|.....|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            5789999999999999999998876

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=99.04  E-value=2.6e-10  Score=30.32  Aligned_cols=27  Identities=26%  Similarity=0.539  Sum_probs=24.1

Q ss_pred             cceecc--ccccccccchhHHHHhHHhcC
Q psy4412           5 YLYACL--WCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         5 ~~~~c~--~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      ++|.|.  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            478999  999999999999999998864

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.03  E-value=1e-10  Score=35.62  Aligned_cols=29  Identities=28%  Similarity=0.667  Sum_probs=26.4

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhc
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      ++++||.|..|++.|.....|..|++.+.
T Consensus        28 ~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C           28 TGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             HCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            46889999999999999999999998875

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=6.7e-10  Score=37.81  Aligned_cols=34  Identities=12%  Similarity=0.278  Sum_probs=25.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKP   34 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~   34 (39)
                      |++++||.|..|++.|.....|..|++.+.....
T Consensus        75 H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           75 EDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTC
T ss_pred             cCCCcceECCCCCCccCCHHHHHHHHHHhCCccc
Confidence            4567788888888888888888888877665443

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=3.1e-10  Score=35.61  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=29.1

Q ss_pred             CCCcceecc-ccccccccchhHHHHhHHhcCCCC
Q psy4412           2 DPTYLYACL-WCDYHTLNSGHMRDHIRRHTGEKP   34 (39)
Q Consensus         2 ~~~~~~~c~-~c~~~~~~~~~~~~~~~~~~~~~~   34 (39)
                      ++++||.|. .|++.|.....|..|+++|....+
T Consensus        32 ~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           32 CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            367899999 999999999999999999877654

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.02  E-value=3.7e-10  Score=36.87  Aligned_cols=35  Identities=40%  Similarity=0.822  Sum_probs=32.2

Q ss_pred             Ccceeccc--cccccccchhHHHHhHHhcCCCCccCC
Q psy4412           4 TYLYACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         4 ~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      ..+|.|..  |++.|.....|..|++.|.++++|.|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   39 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCD   39 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCC
Confidence            45789999  999999999999999999999999985

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.00  E-value=4.4e-10  Score=34.51  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=27.9

Q ss_pred             CCCCcceeccccccccccchhHHHHh-HHhcCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHI-RRHTGE   32 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~-~~~~~~   32 (39)
                      |+++++|.|..|++.|.....|..|+ +.|.++
T Consensus        25 h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A           25 HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             TTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             hCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            56788999999999999999999996 677664

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=98.99  E-value=1.2e-09  Score=36.28  Aligned_cols=35  Identities=37%  Similarity=0.805  Sum_probs=32.0

Q ss_pred             Ccceeccc--cccccccchhHHHHhHHhcCCCCccCC
Q psy4412           4 TYLYACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         4 ~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      .++|.|..  |++.|.....|..|++.|.++++|.|.
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   49 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCT   49 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECC
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCC
Confidence            46789996  999999999999999999999999985

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.99  E-value=2e-10  Score=37.19  Aligned_cols=34  Identities=24%  Similarity=0.580  Sum_probs=29.6

Q ss_pred             CCCcceeccc--cccccccchhHHHHhHHhcCCCCccCC
Q psy4412           2 DPTYLYACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         2 ~~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      .++++|.|..  |++.|.....|..|++.|.+   |.|.
T Consensus        27 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~   62 (85)
T 2j7j_A           27 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK   62 (85)
T ss_dssp             HTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECC
T ss_pred             CCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCC
Confidence            4678999988  99999999999999999988   5554

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.98  E-value=8.7e-10  Score=34.39  Aligned_cols=30  Identities=17%  Similarity=0.362  Sum_probs=27.0

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      .++++|.|..|++.|.....|..|++.+.+
T Consensus        36 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           36 RNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             SSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            478899999999999999999999988765

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.94  E-value=2e-10  Score=36.51  Aligned_cols=29  Identities=31%  Similarity=0.509  Sum_probs=25.8

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhc
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      .++++|.|..|++.|.....|..|++.|+
T Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           45 TGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            46789999999999999999999988763

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.89  E-value=8.8e-11  Score=38.53  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=30.0

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVC   37 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c   37 (39)
                      |++++||.|..|++.|.....|..|++.+.+ .+|.|
T Consensus        26 H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c   61 (88)
T 1llm_C           26 HTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILE   61 (88)
T ss_dssp             HHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHH
T ss_pred             cCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchH
Confidence            3467899999999999999999999988874 45554

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.6e-09  Score=35.03  Aligned_cols=35  Identities=23%  Similarity=0.435  Sum_probs=29.9

Q ss_pred             CCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      .+++|+.|..|+..|. ...|..|. .+.+++++.|.
T Consensus        13 c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~   47 (75)
T 2d9k_A           13 CPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCG   47 (75)
T ss_dssp             CCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECS
T ss_pred             CCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcc
Confidence            4678999999999985 78889998 88899998886

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=1.7e-08  Score=32.36  Aligned_cols=33  Identities=12%  Similarity=0.269  Sum_probs=27.8

Q ss_pred             CCcceeccccccccccchhHHHHh-HHhcCCCCc
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHI-RRHTGEKPF   35 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~-~~~~~~~~~   35 (39)
                      ++++|.|..|++.|.....|..|+ ..|.++++.
T Consensus        35 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A           35 AALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             TTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSC
T ss_pred             CCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            368999999999999999999999 566666654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.75  E-value=2.4e-08  Score=31.96  Aligned_cols=28  Identities=18%  Similarity=0.436  Sum_probs=24.9

Q ss_pred             CcceeccccccccccchhHHHHhHHhcC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      +++|.|..|++.|.....|..|++.+.+
T Consensus        43 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A           43 VAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            3799999999999999999999987554

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=2.2e-08  Score=33.02  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=28.3

Q ss_pred             eeccccccccccchhHHHHhHH-hcCCCC--------ccCC
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRR-HTGEKP--------FVCP   38 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~-~~~~~~--------~~c~   38 (39)
                      +.|..|++.|.....|..|++. |.++++        |.|.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~   66 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP   66 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCS
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCC
Confidence            5688999999999999999998 888877        7775

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.68  E-value=6.9e-09  Score=32.82  Aligned_cols=29  Identities=24%  Similarity=0.591  Sum_probs=24.6

Q ss_pred             CCCCcceeccc--cccccccchhHHHHhHHh
Q psy4412           1 MDPTYLYACLW--CDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         1 h~~~~~~~c~~--c~~~~~~~~~~~~~~~~~   29 (39)
                      |++++||.|..  |++.|.....|..|+++|
T Consensus        42 H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           42 HTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             HSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            46789999965  999999999999998654

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.65  E-value=3.6e-08  Score=34.10  Aligned_cols=29  Identities=14%  Similarity=0.226  Sum_probs=26.9

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      ++||.|..|++.|.....|..|++.+++.
T Consensus        98 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           98 EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            67899999999999999999999999875

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=98.59  E-value=1.1e-08  Score=36.00  Aligned_cols=28  Identities=25%  Similarity=0.451  Sum_probs=24.8

Q ss_pred             CCCCcceeccccccccccchhHHHHhHH
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRR   28 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~   28 (39)
                      |+|+++|.|..|++.|.....|..|.++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            4678999999999999999999998764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=7.2e-09  Score=32.64  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=24.5

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCCCCccCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCP   38 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~   38 (39)
                      |.+++||.|..|++.|.....|..       +++|.|.
T Consensus        13 h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~   43 (73)
T 2ctu_A           13 HLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCE   43 (73)
T ss_dssp             CCCCSEEECSSSCCEEECCCCCCC-------SSSCCCH
T ss_pred             hCCCCCeeCCcccchhCCHHHhCc-------CCCCCCC
Confidence            567899999999999988776654       6677763

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=7.7e-07  Score=26.75  Aligned_cols=18  Identities=6%  Similarity=-0.158  Sum_probs=15.7

Q ss_pred             CCCCcceecccccccccc
Q psy4412           1 MDPTYLYACLWCDYHTLN   18 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~   18 (39)
                      |++++||.|..|++.|.+
T Consensus        36 H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           36 HTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             SCCCCCCCSSSSCCSSCC
T ss_pred             cCCCCCccCCCCCCCCCC
Confidence            568899999999999865

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.18  E-value=1e-07  Score=28.72  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=22.1

Q ss_pred             ccccccchhHHHHhHHhcCCCCccCCC
Q psy4412          13 DYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      ++.|.....+..|++.|+++++|.|.+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~   29 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPI   29 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCC
Confidence            356777777888999999999999964

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.06  E-value=1.1e-06  Score=27.18  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=17.6

Q ss_pred             CCCCcceeccccccccccchh
Q psy4412           1 MDPTYLYACLWCDYHTLNSGH   21 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~   21 (39)
                      |++++||.|..|++.|.....
T Consensus        34 H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A           34 DPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             ETTTTEEBCSSSCCBCEECTT
T ss_pred             cCCCCCEECCCCCCccccCcc
Confidence            568899999999999976654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00037  Score=21.91  Aligned_cols=30  Identities=17%  Similarity=0.464  Sum_probs=23.6

Q ss_pred             cccccccccchhHHHHh-HHhcCCC------CccCCC
Q psy4412          10 LWCDYHTLNSGHMRDHI-RRHTGEK------PFVCPF   39 (39)
Q Consensus        10 ~~c~~~~~~~~~~~~~~-~~~~~~~------~~~c~~   39 (39)
                      ..|++.|.....|..|+ ..|.+.+      +|.|.+
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W   43 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNW   43 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeC
Confidence            34899999999999998 4787665      687753

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.14  E-value=0.00078  Score=20.34  Aligned_cols=27  Identities=15%  Similarity=0.165  Sum_probs=23.1

Q ss_pred             cceeccccccccccchhHHHHhHHhcC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      .++.|..|+..|.....|..|++..-+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp   37 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCP   37 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCc
Confidence            468899999999999999999985544

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=96.52  E-value=0.003  Score=18.01  Aligned_cols=29  Identities=17%  Similarity=0.064  Sum_probs=23.4

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      ....|..|.-+|.....+..|.+..-..+
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~YC~s~   35 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQFYCKNK   35 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHHTSCCC
T ss_pred             CcCeeccccceehhhHHHhhhheecCCCC
Confidence            45789999999999999999987665443

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.34  E-value=0.015  Score=16.33  Aligned_cols=25  Identities=12%  Similarity=0.180  Sum_probs=20.7

Q ss_pred             CcceeccccccccccchhHHHHhHH
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRR   28 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~   28 (39)
                      ...|.|..|.+.+.....|..|-..
T Consensus         3 ~EGFiCP~C~~~l~s~~~L~~Hye~   27 (34)
T 3mjh_B            3 SEGFICPQCMKSLGSADELFKHYEA   27 (34)
T ss_dssp             SEEEECTTTCCEESSHHHHHHHHHH
T ss_pred             CcccCCcHHHHHcCCHHHHHHHHHh
Confidence            3458999999999999999988653

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=95.19  E-value=0.01  Score=20.07  Aligned_cols=25  Identities=24%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             eeccccccccccchhHHHHhHHhcCCCC
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRHTGEKP   34 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~   34 (39)
                      ..|.+||+.|..   |..|...+.+..|
T Consensus        22 iiClecGK~fK~---LkRHL~~~hgltp   46 (87)
T 2jsp_A           22 IVCLECGGSFKS---LKRHLTTHHSMTP   46 (87)
T ss_dssp             EECTBTCCEESB---HHHHHHHTTCSCH
T ss_pred             eEecccchhhHH---HHHHHHHccCCCH
Confidence            579999999875   6688888666544

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=95.07  E-value=0.024  Score=21.89  Aligned_cols=26  Identities=12%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             Ccceecccccccccc-chhHHHHhHHh
Q psy4412           4 TYLYACLWCDYHTLN-SGHMRDHIRRH   29 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~-~~~~~~~~~~~   29 (39)
                      ..|..|..|+..|.+ .+.|..|...+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            357899999999987 88888887654

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.01  E-value=0.024  Score=20.09  Aligned_cols=24  Identities=13%  Similarity=0.128  Sum_probs=19.8

Q ss_pred             CcceeccccccccccchhHHHHhH
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      ...+.|..|...|.....+..|..
T Consensus        91 ~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           91 DRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCCeEcCCCCCEeCCHHHHHHHHC
Confidence            456789999999999888887754

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.67  E-value=0.023  Score=17.62  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.1

Q ss_pred             eeccccccccccchhHHHHhH
Q psy4412           7 YACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      -.|..|+..|.....++.|+.
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            489999999999988988864

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=93.10  E-value=0.13  Score=18.38  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=23.4

Q ss_pred             CcceeccccccccccchhHHHHhHHhcC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      ..+..|..|...|.....+..|++...+
T Consensus        13 ~~~~~CLFCd~~~~s~~~~l~H~k~~H~   40 (121)
T 1wir_A           13 RQHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CCceeEecCCCcccCHHHHHHHHHHhcC
Confidence            3568899999999999999999886654

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=89.29  E-value=0.22  Score=13.79  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=19.4

Q ss_pred             ceeccccccccccchhHHHHhHHh
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      ...|..|.+-+....++..|.+-.
T Consensus         9 kqhcrfckkkysdvknlikhire~   32 (37)
T 2elu_A            9 KQHCRFCKKKYSDVKNLIKHIRDA   32 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457999999998888898887743

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=88.86  E-value=0.18  Score=17.73  Aligned_cols=12  Identities=17%  Similarity=0.321  Sum_probs=10.4

Q ss_pred             cceecccccccc
Q psy4412           5 YLYACLWCDYHT   16 (39)
Q Consensus         5 ~~~~c~~c~~~~   16 (39)
                      .|+.|..||..|
T Consensus        66 ~p~~C~~CG~~F   77 (105)
T 2gmg_A           66 KPAQCRKCGFVF   77 (105)
T ss_dssp             CCCBBTTTCCBC
T ss_pred             ECcChhhCcCee
Confidence            478999999988

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=88.79  E-value=0.36  Score=18.74  Aligned_cols=23  Identities=26%  Similarity=0.634  Sum_probs=17.7

Q ss_pred             eeccccccccccchhHHHHhHHhc
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      |.|..|++ +..-.++..|++.|.
T Consensus       155 YKCe~CgK-YvDId~~~~Hlk~Hg  177 (226)
T 2czr_A          155 YKCEECGK-YVDIENLEAHLREHG  177 (226)
T ss_dssp             EECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             EehhhcCc-eecHHHHHHHHHHcC
Confidence            68999997 556677888887664

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=87.39  E-value=0.36  Score=13.89  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=16.4

Q ss_pred             cceeccccccccccchhHHHHhHHh
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      -.+.|..|+..+.. ..+..|.-.|
T Consensus         8 ~~~~C~~C~~~i~~-~~~~EH~D~H   31 (39)
T 2i5o_A            8 DQVPCEKCGSLVPV-WDMPEHMDYH   31 (39)
T ss_dssp             CEEECTTTCCEEEG-GGHHHHHHHH
T ss_pred             CCcccccccCcCCc-ccccchhhHH
Confidence            35789999988776 4456665444

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=87.26  E-value=0.31  Score=13.02  Aligned_cols=21  Identities=19%  Similarity=0.627  Sum_probs=15.7

Q ss_pred             eeccccccccccchhHHHHhH
Q psy4412           7 YACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      +.|..|.........+..|..
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHH
Confidence            678999887777777776643

>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}

Probab=86.44  E-value=0.22  Score=13.13  Aligned_cols=9  Identities=33%  Similarity=0.973  Sum_probs=4.0

Q ss_pred             Ccceeccccc
Q psy4412           4 TYLYACLWCD   13 (39)
Q Consensus         4 ~~~~~c~~c~   13 (39)
                      ++|| |..|+
T Consensus         2 ~RpY-Ce~CE   10 (26)
T 2hqh_E            2 SRPY-CEICE   10 (26)
T ss_dssp             --CE-ETTTT
T ss_pred             CCcc-chHHH
Confidence            4565 56664

>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=84.40  E-value=0.4  Score=15.79  Aligned_cols=15  Identities=13%  Similarity=0.129  Sum_probs=11.8

Q ss_pred             cceeccccccccccc
Q psy4412           5 YLYACLWCDYHTLNS   19 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~   19 (39)
                      -|+.|..|+..|...
T Consensus        28 lpf~C~~C~~~FC~~   42 (75)
T 1wys_A           28 LPFVCDGCSGIFCLE   42 (75)
T ss_dssp             CCEECTTTCCEECST
T ss_pred             eeeECcccCcCcCcc
Confidence            478999999888653

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=83.55  E-value=0.53  Score=18.15  Aligned_cols=11  Identities=27%  Similarity=0.694  Sum_probs=8.3

Q ss_pred             ceecccccccc
Q psy4412           6 LYACLWCDYHT   16 (39)
Q Consensus         6 ~~~c~~c~~~~   16 (39)
                      -|.|..||..+
T Consensus       171 ~~~C~~CG~i~  181 (202)
T 1yuz_A          171 FHLCPICGYIH  181 (202)
T ss_dssp             EEECSSSCCEE
T ss_pred             EEEECCCCCEE
Confidence            47888888764

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=83.32  E-value=0.48  Score=14.31  Aligned_cols=14  Identities=21%  Similarity=0.368  Sum_probs=8.9

Q ss_pred             ceeccccccccccc
Q psy4412           6 LYACLWCDYHTLNS   19 (39)
Q Consensus         6 ~~~c~~c~~~~~~~   19 (39)
                      -|.|..|+..|...
T Consensus         3 iY~C~rCg~~fs~~   16 (48)
T 4ayb_P            3 VYRCGKCWKTFTDE   16 (48)
T ss_dssp             --CCCCTTTTCCCC
T ss_pred             EEEeeccCCCccHH
Confidence            36788888877654

>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}

Probab=82.40  E-value=0.84  Score=15.22  Aligned_cols=13  Identities=15%  Similarity=0.169  Sum_probs=10.5

Q ss_pred             cceeccccccccc
Q psy4412           5 YLYACLWCDYHTL   17 (39)
Q Consensus         5 ~~~~c~~c~~~~~   17 (39)
                      ++..|..|+.-|.
T Consensus        55 ~~~RC~eCG~~fk   67 (80)
T 2odx_A           55 EVARCWECGSVYK   67 (80)
T ss_dssp             CEEECSSSCCEEE
T ss_pred             CCeECCCCCeEEE
Confidence            5788999998774

>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...

Probab=81.69  E-value=0.8  Score=15.86  Aligned_cols=13  Identities=23%  Similarity=0.294  Sum_probs=10.2

Q ss_pred             cceeccccccccc
Q psy4412           5 YLYACLWCDYHTL   17 (39)
Q Consensus         5 ~~~~c~~c~~~~~   17 (39)
                      ++..|..|+..|.
T Consensus        78 ~~~RC~eCG~~fk   90 (98)
T 1v54_F           78 EAQRCPSCGTHYK   90 (98)
T ss_dssp             SCEECTTTCCEEE
T ss_pred             CceECCCCCeEEE
Confidence            4788999998664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	39
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	6e-06
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	2e-05
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	3e-04
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.001

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 6e-06
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 7  YACLWCDYHTLNSGHMRDHIRR-HTGEKPFVC 37
          Y C  C        H+  HI++ HT E+P  C
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 2e-05
 Identities = 6/36 (16%), Positives = 17/36 (47%)

Query: 4  TYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF 39
          ++      C        H+++H++ H+  + ++C F
Sbjct: 1  SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.2 bits (71), Expect = 3e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEK 33
          +AC  C    + S H+  HI+ H  +K
Sbjct: 3  FACPECPKRFMRSDHLSKHIKTHQNKK 29

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 29.5 bits (67), Expect = 0.001
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 7  YACLWCDYHTLNSGHMRDHIRRHTGEK 33
          + C  C        H++ H R HT EK
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEK 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	39
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.82
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.78
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.75
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.74
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.73
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.7
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.7
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.7
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.69
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.68
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.65
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.63
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.62
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.53
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.51
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.46
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.4
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.35
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.34
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.27
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.06
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.99
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.96
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.95
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.9
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.7
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.7
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.7
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.67
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.67
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.59
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.59
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.58
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.53
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.36
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.3
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	98.28
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.19
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.12
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.97
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.95
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.94
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.9
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.74
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.62
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.23
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	97.2
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	97.11
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.76
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.59
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.43
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	96.38
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	96.26
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.08
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.07
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	96.06
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.87
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.8
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	94.77
d1fu9a_	36	U-shaped transcription factor, different fingers {	94.66
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	94.47
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	92.43
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.32
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	92.21
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	91.11
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	90.22
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	88.59
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	88.01
d1d4ua2	36	DNA repair factor XPA DNA- and RPA-binding domain,	86.15
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	84.12
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	83.13
d1dfxa2	36	Desulfoferrodoxin N-terminal domain {Desulfovibrio	83.0
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	82.65
d1vzia2	37	Desulfoferrodoxin N-terminal domain {Desulfoarculu	82.38
d1u5sb2	35	Pinch (particularly interesting new Cys-His) prote	82.17
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	81.79
d1wjva2	31	Cell growth regulating nucleolar protein LyaR {Mou	81.54
d1dxga_	36	Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}	81.5

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.7e-22  Score=57.61  Aligned_cols=38  Identities=29%  Similarity=0.559  Sum_probs=34.8

Q ss_pred             CCCcceeccccccccccchhHHHHhH-HhcCCCCccCCC
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIR-RHTGEKPFVCPF   39 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~c~~   39 (39)
                      +.++||.|..|+++|.....|..|++ +|++++||.|.+
T Consensus         1 s~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            35789999999999999999999975 799999999975

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.1e-21  Score=53.18  Aligned_cols=32  Identities=31%  Similarity=0.446  Sum_probs=30.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      |++++||.|..|+++|.+.+.|..|+++|++|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            78999999999999999999999999999986

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.4e-20  Score=52.39  Aligned_cols=32  Identities=31%  Similarity=0.456  Sum_probs=30.6

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      |++++||.|..|+++|...+.|..|+++|+||
T Consensus         7 Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           7 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            67999999999999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=8.1e-19  Score=49.57  Aligned_cols=32  Identities=16%  Similarity=0.272  Sum_probs=30.3

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      |+|++||.|..|++.|.+...|..|+++|+.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            68999999999999999999999999999875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.6e-18  Score=49.31  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=30.4

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcCC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      |+|++||.|..|+++|...+.|..|+++|..+
T Consensus         3 HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            78999999999999999999999999999875

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.9e-18  Score=51.78  Aligned_cols=35  Identities=26%  Similarity=0.595  Sum_probs=32.6

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      ++||.| .|++.|.....|..|+++|++++||.|.+
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~   35 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGV   35 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCC
Confidence            689999 59999999999999999999999999964

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.1e-18  Score=47.75  Aligned_cols=33  Identities=21%  Similarity=0.707  Sum_probs=30.4

Q ss_pred             eeccc--cccccccchhHHHHhHHhcCCCCccCCC
Q psy4412           7 YACLW--CDYHTLNSGHMRDHIRRHTGEKPFVCPF   39 (39)
Q Consensus         7 ~~c~~--c~~~~~~~~~~~~~~~~~~~~~~~~c~~   39 (39)
                      |.|..  |++.|.....|..|+++|++++||.|.+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            56776  9999999999999999999999999975

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1e-17  Score=47.83  Aligned_cols=31  Identities=26%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      |++++||.|..|+++|.....|..|++.|..
T Consensus         6 HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           6 STGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             cCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            7899999999999999999999999999875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.6e-18  Score=45.73  Aligned_cols=29  Identities=31%  Similarity=0.611  Sum_probs=27.6

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      +||.|..|+++|.+.+.|..|+++|++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58999999999999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.69  E-value=8.3e-18  Score=45.88  Aligned_cols=29  Identities=31%  Similarity=0.567  Sum_probs=27.7

Q ss_pred             cceeccccccccccchhHHHHhHHhcCCC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      +||.|..|+++|.....|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.7e-17  Score=44.89  Aligned_cols=28  Identities=36%  Similarity=0.624  Sum_probs=26.6

Q ss_pred             CcceeccccccccccchhHHHHhHHhcC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      ++||.|..|+++|.....|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-16  Score=45.34  Aligned_cols=31  Identities=26%  Similarity=0.421  Sum_probs=27.8

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHhcC
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      |+|++||.|..|+++|.....|..|++.+.+
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            7899999999999999999999999865444

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1e-16  Score=42.62  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             cceeccccccccccchhHHHHhHHhc
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      +||.|.+|+++|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999984

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1e-16  Score=47.66  Aligned_cols=33  Identities=24%  Similarity=0.544  Sum_probs=30.5

Q ss_pred             CCCCcceeccc--cccccccchhHHHHhHHhcCCC
Q psy4412           1 MDPTYLYACLW--CDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         1 h~~~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |++++||.|..  |++.|.....|..|+++|++++
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            46899999987  9999999999999999999985

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.7e-15  Score=40.52  Aligned_cols=28  Identities=29%  Similarity=0.570  Sum_probs=26.4

Q ss_pred             cceeccc--cccccccchhHHHHhHHhcCC
Q psy4412           5 YLYACLW--CDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         5 ~~~~c~~--c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      +||.|..  |+++|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5899998  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.3e-15  Score=40.16  Aligned_cols=28  Identities=29%  Similarity=0.599  Sum_probs=26.2

Q ss_pred             cceeccc--cccccccchhHHHHhHHhcCC
Q psy4412           5 YLYACLW--CDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         5 ~~~~c~~--c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      +||.|..  |+++|.....|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899987  999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.8e-14  Score=39.21  Aligned_cols=29  Identities=34%  Similarity=0.673  Sum_probs=26.4

Q ss_pred             cceecc--ccccccccchhHHHHhHHhcCCC
Q psy4412           5 YLYACL--WCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         5 ~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      +||.|.  .|+++|...+.|..|+++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            588996  49999999999999999999986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.5e-14  Score=42.27  Aligned_cols=29  Identities=21%  Similarity=0.283  Sum_probs=26.9

Q ss_pred             CCCCcceeccccccccccchhHHHHhHHh
Q psy4412           1 MDPTYLYACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         1 h~~~~~~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      |++++||.|..|+++|.....|..|+++|
T Consensus        25 Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1          25 HLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             HSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             cccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            57899999999999999999999998875

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3.3e-13  Score=36.53  Aligned_cols=27  Identities=44%  Similarity=0.698  Sum_probs=25.0

Q ss_pred             cceeccc--cccccccchhHHHHhHHhcC
Q psy4412           5 YLYACLW--CDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         5 ~~~~c~~--c~~~~~~~~~~~~~~~~~~~   31 (39)
                      +||.|..  |+++|.....|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5899988  99999999999999999976

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=1e-12  Score=36.24  Aligned_cols=29  Identities=21%  Similarity=0.432  Sum_probs=26.5

Q ss_pred             Ccceeccc--cccccccchhHHHHhHHhcCC
Q psy4412           4 TYLYACLW--CDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         4 ~~~~~c~~--c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      ++||.|..  |++.|.....|..|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            58999998  999999999999999999764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.2e-12  Score=35.11  Aligned_cols=26  Identities=27%  Similarity=0.623  Sum_probs=24.0

Q ss_pred             cceeccc--cccccccchhHHHHhHHhc
Q psy4412           5 YLYACLW--CDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         5 ~~~~c~~--c~~~~~~~~~~~~~~~~~~   30 (39)
                      +||.|..  |+++|.....|..|++.|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5899988  9999999999999999885

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7e-12  Score=34.07  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=29.5

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCCCCcc
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEKPFV   36 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~   36 (39)
                      .+...|..|++.|...-.|..|.-+|++|+||.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            355789999999999999999999999999983

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1.1e-10  Score=30.67  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=24.3

Q ss_pred             CcceeccccccccccchhHHHHhHHhc
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      ++||.|+.|++.|..+.....|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999988874

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.2e-10  Score=29.93  Aligned_cols=29  Identities=34%  Similarity=0.737  Sum_probs=26.2

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      ++||.|..|......++.+..|.+.|+|.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            57999999999999999999999999873

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.4e-10  Score=28.95  Aligned_cols=26  Identities=27%  Similarity=0.485  Sum_probs=23.5

Q ss_pred             ceeccccccccccchhHHHHhHHhcC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      |..|..|++.|.....+..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56799999999999999999999875

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.3e-10  Score=28.93  Aligned_cols=26  Identities=31%  Similarity=0.515  Sum_probs=23.8

Q ss_pred             eeccccccccccchhHHHHhHHhcCC
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      ..|.+|+++|..++.+..|+-+|++|
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46999999999999999999999885

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.2e-09  Score=29.08  Aligned_cols=29  Identities=28%  Similarity=0.549  Sum_probs=26.5

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      ++||.|..|...|.....+..|.++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            58999999999999999999999999874

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1.3e-08  Score=26.06  Aligned_cols=26  Identities=38%  Similarity=0.613  Sum_probs=23.9

Q ss_pred             eccccccccccchhHHHHhHHhcCCC
Q psy4412           8 ACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         8 ~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      .|..|.+.|...-.+..|.+.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            58899999999999999999999985

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.4e-08  Score=28.80  Aligned_cols=26  Identities=15%  Similarity=0.323  Sum_probs=22.4

Q ss_pred             CCCcceeccccccccccchhHHHHhH
Q psy4412           2 DPTYLYACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         2 ~~~~~~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      +|.+||.|..|++.|....++..|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            57899999999999999888887753

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.2e-08  Score=27.01  Aligned_cols=27  Identities=22%  Similarity=0.565  Sum_probs=23.2

Q ss_pred             cceeccc--cccccccchhHHHHhHHhcC
Q psy4412           5 YLYACLW--CDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         5 ~~~~c~~--c~~~~~~~~~~~~~~~~~~~   31 (39)
                      +||.|..  |.+++...++|+.|++.+.|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5888888  99999999999999987643

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.67  E-value=1.9e-08  Score=28.20  Aligned_cols=30  Identities=17%  Similarity=0.477  Sum_probs=26.5

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      .+.|.|..|++.|.....|..|++.|..++
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhcchH
Confidence            356899999999999999999999997664

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.67  E-value=1.1e-08  Score=25.88  Aligned_cols=24  Identities=25%  Similarity=0.576  Sum_probs=21.6

Q ss_pred             eeccccccccccchhHHHHhHHhc
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      |.|..|..+|...+.+..|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            578999999999999999999874

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.5e-08  Score=25.57  Aligned_cols=27  Identities=30%  Similarity=0.637  Sum_probs=23.5

Q ss_pred             eeccccccccccchhHHHHhHHhcCCC
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      |.|..|+..-...+.|..|++.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            678899988888889999999999874

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=2.7e-09  Score=30.01  Aligned_cols=15  Identities=53%  Similarity=0.888  Sum_probs=12.9

Q ss_pred             HhHHhcCCCCccCCC
Q psy4412          25 HIRRHTGEKPFVCPF   39 (39)
Q Consensus        25 ~~~~~~~~~~~~c~~   39 (39)
                      |.|+|++|+||+|.+
T Consensus         2 h~R~HTgeKPy~C~~   16 (37)
T d1p7aa_           2 STRGSTGIKPFQCPD   16 (37)
T ss_dssp             CSSTTCCSSSBCCTT
T ss_pred             CCCccCCccCeEeCC
Confidence            568999999999964

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.6e-08  Score=25.48  Aligned_cols=26  Identities=35%  Similarity=0.747  Sum_probs=23.9

Q ss_pred             cceeccccccccccchhHHHHhHHhc
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      +|+.|..|..+-...+++..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68999999999999999999999885

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.9e-08  Score=26.25  Aligned_cols=27  Identities=26%  Similarity=0.443  Sum_probs=22.9

Q ss_pred             cceeccc--cccccccchhHHHHh-HHhcC
Q psy4412           5 YLYACLW--CDYHTLNSGHMRDHI-RRHTG   31 (39)
Q Consensus         5 ~~~~c~~--c~~~~~~~~~~~~~~-~~~~~   31 (39)
                      +||.|..  |.++|.+.++-..|+ |.|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            5888888  999999999998896 77754

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.36  E-value=4.4e-07  Score=23.71  Aligned_cols=28  Identities=29%  Similarity=0.471  Sum_probs=23.2

Q ss_pred             cceeccc--cccccccchhHHHHhHHhcCC
Q psy4412           5 YLYACLW--CDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         5 ~~~~c~~--c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      +||.|..  |.+.|...-.+..|...|++|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            4677766  999999999999998888875

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.30  E-value=4.6e-07  Score=23.58  Aligned_cols=25  Identities=24%  Similarity=0.506  Sum_probs=21.6

Q ss_pred             cceeccc--cccccccchhHHHHhHHh
Q psy4412           5 YLYACLW--CDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         5 ~~~~c~~--c~~~~~~~~~~~~~~~~~   29 (39)
                      .||.|..  |++.|...+.+..|..+|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            5788887  889999999999998876

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=5.3e-07  Score=23.51  Aligned_cols=26  Identities=19%  Similarity=0.713  Sum_probs=22.8

Q ss_pred             ceeccccccccccchhHHHHhHHhcC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      ||.|..|.-+|....+|..|+.+.+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH   26 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAH   26 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CcccceeeeeEeeccchhHhhhhhhh
Confidence            78999999999999999999876554

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=1.7e-06  Score=22.48  Aligned_cols=29  Identities=28%  Similarity=0.495  Sum_probs=25.4

Q ss_pred             CcceeccccccccccchhHHHHhHHhcCC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      +.-|.|..|...|...-.++.|+-+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            34578999999999999999999999875

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=1.4e-06  Score=21.87  Aligned_cols=22  Identities=18%  Similarity=0.520  Sum_probs=19.5

Q ss_pred             ceeccccccccccchhHHHHhH
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      ||.|..|+..|.+..++..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999988753

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.3e-06  Score=21.66  Aligned_cols=27  Identities=22%  Similarity=0.779  Sum_probs=23.0

Q ss_pred             cceeccccccccccchhHHHHhHHhcC
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      +||.|..|.......++|..|.....+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            589999999999999999999876544

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=6.5e-06  Score=22.93  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=23.4

Q ss_pred             CCcceeccc--cccccccchhHHHHhHHhc
Q psy4412           3 PTYLYACLW--CDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         3 ~~~~~~c~~--c~~~~~~~~~~~~~~~~~~   30 (39)
                      .++||.|..  |+..|.+...|..|..-|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            478999965  9999999999998877664

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=3.4e-06  Score=21.60  Aligned_cols=22  Identities=14%  Similarity=0.359  Sum_probs=19.3

Q ss_pred             ceeccccccccccchhHHHHhH
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      ||.|..|++.+....++..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6899999999999999988864

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=7e-06  Score=21.39  Aligned_cols=25  Identities=16%  Similarity=0.676  Sum_probs=21.3

Q ss_pred             cceeccccccccccchhHHHHhHHh
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      +||.|..|+-.-.+.++|..|.+.-
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~   25 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKF   25 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHHH
Confidence            5899999998888999999987643

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5.3e-06  Score=22.59  Aligned_cols=24  Identities=33%  Similarity=0.317  Sum_probs=19.0

Q ss_pred             ccccccccccchhHHHHhHHhcCC
Q psy4412           9 CLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         9 c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      |.--++.|.....|..|+|.|++|
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            334456788888999999999986

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.74  E-value=1.7e-05  Score=21.02  Aligned_cols=26  Identities=23%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             ceeccccccccccchhHHHHhH-HhcC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIR-RHTG   31 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~-~~~~   31 (39)
                      ||.|..|+..|..+.-+..|.. .|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            7899999999999888888764 4443

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=3.9e-05  Score=19.70  Aligned_cols=25  Identities=28%  Similarity=0.431  Sum_probs=21.3

Q ss_pred             ceeccccccccccchhHHHHhHHhc
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      |-.|..|+.+-.....|+.|.++|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4578899988888999999998874

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00017  Score=20.97  Aligned_cols=25  Identities=20%  Similarity=0.472  Sum_probs=21.5

Q ss_pred             ceeccccccccccchhHHHHhHHhc
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      .+.|..|++.|.....++.|...|-
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            4789999999999999999877664

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0002  Score=18.53  Aligned_cols=26  Identities=15%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             ceeccccccccccchhHHHHhHHhcC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      -|.|..|++.+.....+..|......
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            36899999999999999888765544

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0003  Score=18.96  Aligned_cols=26  Identities=19%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             ceeccccccccccchhHHHHhHHhcC
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      .|.|..|++.|.....+..|--...+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47899999999999988888766555

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00066  Score=17.28  Aligned_cols=23  Identities=22%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             eeccccccccccchhHHHHhHHh
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~   29 (39)
                      |.|..|.-.....+++..|.+..
T Consensus         3 ~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHT
T ss_pred             ccCCcchhheeehhhhhHHhhhc
Confidence            68999999889999999998754

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.59  E-value=0.001  Score=17.41  Aligned_cols=27  Identities=30%  Similarity=0.664  Sum_probs=20.7

Q ss_pred             ceeccc--cccccccchhHHHHhHHhcCC
Q psy4412           6 LYACLW--CDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         6 ~~~c~~--c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      .|.|..  |+..|.....|..|.-.|+||
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            355554  888888888899998888875

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.43  E-value=0.0013  Score=17.54  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=19.2

Q ss_pred             ceeccccccccccchhHHHHhHH
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIRR   28 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~~   28 (39)
                      .|.|.-|+-.|...+.+..|+.-
T Consensus         8 rf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ceeccccceeecChhHHHhhhhe
Confidence            37899999999999999888653

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00058  Score=21.20  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=19.3

Q ss_pred             ceeccccccccccchhHHHHhH
Q psy4412           6 LYACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      -|-|..|.+.|.+...+..|.+
T Consensus        15 qfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTT
T ss_pred             EEecccccCccCCHHHHHHHHc
Confidence            4789999999999999988865

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0028  Score=19.53  Aligned_cols=26  Identities=23%  Similarity=0.572  Sum_probs=22.3

Q ss_pred             cceeccccccccccchhHHHHhHHhc
Q psy4412           5 YLYACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         5 ~~~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      ..|.|..|...|...+.+..|...|.
T Consensus        17 ~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          17 STYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             ceeeechhHHHHhhHHHHHHHHHhcc
Confidence            35899999999999999999987764

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.08  E-value=0.0023  Score=16.11  Aligned_cols=21  Identities=19%  Similarity=0.192  Sum_probs=16.9

Q ss_pred             cccccccccchhHHHHhHHhc
Q psy4412          10 LWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus        10 ~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      ..|+++|..-..+..|+..|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            348999998888888887765

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.07  E-value=0.0035  Score=18.08  Aligned_cols=30  Identities=17%  Similarity=0.182  Sum_probs=23.6

Q ss_pred             CCcceeccccccccccchhHHHHhHHhcCC
Q psy4412           3 PTYLYACLWCDYHTLNSGHMRDHIRRHTGE   32 (39)
Q Consensus         3 ~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~   32 (39)
                      .+.|-.|..|+....++.++..|...-.-.
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~   50 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFA   50 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSC
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence            356789999999999999999887654433

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.06  E-value=0.0024  Score=17.20  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=19.6

Q ss_pred             CcceeccccccccccchhHHHHhH
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      +..|.|..|.+.+..-+++-.|--
T Consensus         6 ~~~yRC~~C~r~YTHISNFCRHyv   29 (37)
T d2drpa1           6 EHTYRCKVCSRVYTHISNFCRHYV   29 (37)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHH
T ss_pred             CcEEEeehhhHHHHHHHHHHHHHH
Confidence            446899999999999888877753

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0032  Score=16.04  Aligned_cols=19  Identities=26%  Similarity=0.476  Sum_probs=16.1

Q ss_pred             ccccccccchhHHHHhHHh
Q psy4412          11 WCDYHTLNSGHMRDHIRRH   29 (39)
Q Consensus        11 ~c~~~~~~~~~~~~~~~~~   29 (39)
                      -|.+-|...+.++.|..+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            3889999999999997766

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.80  E-value=0.0033  Score=15.57  Aligned_cols=22  Identities=23%  Similarity=0.570  Sum_probs=18.4

Q ss_pred             eeccccccccccchhHHHHhHH
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRR   28 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~   28 (39)
                      |.|..|-+-|....++..|..+
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            6789999999998888888664

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.01  Score=15.16  Aligned_cols=19  Identities=16%  Similarity=0.119  Sum_probs=14.8

Q ss_pred             ccccccccccchhHHHHhH
Q psy4412           9 CLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         9 c~~c~~~~~~~~~~~~~~~   27 (39)
                      ..-|++.|.++..+.-|..
T Consensus         5 f~gc~kifsnrqylnhh~k   23 (30)
T d2dlka1           5 FPGCGRIFSNRQYLNHHKK   23 (30)
T ss_dssp             STTTCCEESSHHHHHHHHH
T ss_pred             CCCchhhhccHHHHHhHHH
Confidence            4459999999888877754

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.66  E-value=0.013  Score=15.90  Aligned_cols=26  Identities=19%  Similarity=0.128  Sum_probs=20.5

Q ss_pred             eccccccccccchhHHHHhHHhcCCC
Q psy4412           8 ACLWCDYHTLNSGHMRDHIRRHTGEK   33 (39)
Q Consensus         8 ~c~~c~~~~~~~~~~~~~~~~~~~~~   33 (39)
                      -|..|.-.|.....+..|....-..+
T Consensus        10 YC~~CDI~Fn~~~T~~aHKk~YCss~   35 (36)
T d1fu9a_          10 YCSTCDISFNYVKTYLAHKQFYCKNK   35 (36)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTSCCC
T ss_pred             HHhhCCceehhHHHHHHHHHhcccCC
Confidence            48889999999999999877665443

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.43  E-value=0.083  Score=18.08  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=23.0

Q ss_pred             CcceeccccccccccchhHHHHhHHhcC
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIRRHTG   31 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~   31 (39)
                      ..+..|..|.+.|.....+..|++...+
T Consensus        13 ~~~~~CLFCd~~f~s~~~~l~H~k~~H~   40 (121)
T d1wira_          13 RQHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             cccceecccCCccCCHHHHHHHHHHhhC
Confidence            3467899999999999999999876554

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.038  Score=16.81  Aligned_cols=19  Identities=11%  Similarity=0.167  Sum_probs=14.2

Q ss_pred             CcceeccccccccccchhH
Q psy4412           4 TYLYACLWCDYHTLNSGHM   22 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~   22 (39)
                      ...|.|..|++.|......
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~   30 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEAN   30 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHH
T ss_pred             CCceECCCCCCCcchhhHH
Confidence            4569999999988765443

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.051  Score=15.67  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=17.2

Q ss_pred             eeccccccccccchhHHHHhH
Q psy4412           7 YACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      -.|..|+-.+....+++.|..
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiF   27 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIF   27 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccCcccceeeeeecchHhhhh
Confidence            479999988888888888853

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.068  Score=14.40  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=15.1

Q ss_pred             ceeccccccccccchhHHHHh
Q psy4412           6 LYACLWCDYHTLNSGHMRDHI   26 (39)
Q Consensus         6 ~~~c~~c~~~~~~~~~~~~~~   26 (39)
                      ...|.+|...|...-++-.|+
T Consensus         3 kltclecmrtfkssfsiwrhq   23 (41)
T d1wjpa3           3 KLTCLECMRTFKSSFSIWRHQ   23 (41)
T ss_dssp             GGEEGGGTEECSSHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhh
Confidence            357899999997766555554

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=90.22  E-value=0.12  Score=18.96  Aligned_cols=23  Identities=26%  Similarity=0.634  Sum_probs=17.8

Q ss_pred             eeccccccccccchhHHHHhHHhc
Q psy4412           7 YACLWCDYHTLNSGHMRDHIRRHT   30 (39)
Q Consensus         7 ~~c~~c~~~~~~~~~~~~~~~~~~   30 (39)
                      |.|..|++ +..-.++..|++.|.
T Consensus       147 YKCe~CgK-YvDie~~~~H~k~HG  169 (218)
T d2czra1         147 YKCEECGK-YVDIENLEAHLREHG  169 (218)
T ss_dssp             EECTTTCC-EEEGGGHHHHHHTTT
T ss_pred             eehhhcCc-eecHHHHHHHHHHcC
Confidence            68999987 556677888888764

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=88.59  E-value=0.13  Score=13.93  Aligned_cols=13  Identities=23%  Similarity=0.534  Sum_probs=8.0

Q ss_pred             Ccceecccccccc
Q psy4412           4 TYLYACLWCDYHT   16 (39)
Q Consensus         4 ~~~~~c~~c~~~~   16 (39)
                      ++-|.|..|+...
T Consensus         3 ~~~~vC~vCGyi~   15 (36)
T d1yuza2           3 DKFHLCPICGYIH   15 (36)
T ss_dssp             CCEEECSSSCCEE
T ss_pred             CCEEECCCCCCEe
Confidence            3456777777643

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.01  E-value=0.15  Score=13.88  Aligned_cols=11  Identities=36%  Similarity=1.005  Sum_probs=6.7

Q ss_pred             cceeccccccc
Q psy4412           5 YLYACLWCDYH   15 (39)
Q Consensus         5 ~~~~c~~c~~~   15 (39)
                      .-|.|..|+..
T Consensus         4 ~~~~C~vCG~i   14 (37)
T d1nnqa2           4 KVYICPICGYT   14 (37)
T ss_dssp             CEEECTTTCCE
T ss_pred             cEEECCCCCCE
Confidence            34667777754

>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.15  E-value=0.17  Score=13.63  Aligned_cols=13  Identities=23%  Similarity=0.447  Sum_probs=9.9

Q ss_pred             eeccccccccccc
Q psy4412           7 YACLWCDYHTLNS   19 (39)
Q Consensus         7 ~~c~~c~~~~~~~   19 (39)
                      -.|..|++.|..+
T Consensus         6 ~~C~eCg~~F~DS   18 (36)
T d1d4ua2           6 VICEECGKEFMDS   18 (36)
T ss_dssp             EECTTTCCEESCS
T ss_pred             HHHHHhCcHHHHH
Confidence            4689999888654

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=84.12  E-value=0.24  Score=12.68  Aligned_cols=12  Identities=17%  Similarity=0.484  Sum_probs=7.9

Q ss_pred             eecccccccccc
Q psy4412           7 YACLWCDYHTLN   18 (39)
Q Consensus         7 ~~c~~c~~~~~~   18 (39)
                      |.|..|++++.+
T Consensus         1 frca~cgk~les   12 (31)
T d1ibia2           1 FRCAKCGKSLES   12 (31)
T ss_dssp             EECSSSCCEECS
T ss_pred             CccccccCcccc
Confidence            467778876643

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.13  E-value=0.37  Score=14.09  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=18.6

Q ss_pred             Ccceeccc--cccccccchhHHHHhHH
Q psy4412           4 TYLYACLW--CDYHTLNSGHMRDHIRR   28 (39)
Q Consensus         4 ~~~~~c~~--c~~~~~~~~~~~~~~~~   28 (39)
                      -+||.|..  |..+|....++.-|-+.
T Consensus        18 yrpyrcvhqgc~aaftiq~nlilhy~a   44 (61)
T d1x3ca1          18 YRPYRCVHQGCFAAFTIQQNLILHYQA   44 (61)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHH
T ss_pred             CCceeeeccchhhhhhhhhhHHHHHHH
Confidence            36788887  77888888887777553

>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulfoferrodoxin N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=83.00  E-value=0.24  Score=13.39  Aligned_cols=11  Identities=27%  Similarity=0.806  Sum_probs=8.4

Q ss_pred             ceecccccccc
Q psy4412           6 LYACLWCDYHT   16 (39)
Q Consensus         6 ~~~c~~c~~~~   16 (39)
                      -|.|..|++..
T Consensus         6 vYkC~~CGNiV   16 (36)
T d1dfxa2           6 VYKCTHCGNIV   16 (36)
T ss_dssp             EEECTTTCCEE
T ss_pred             EEEecccCcEE
Confidence            47899998754

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=82.65  E-value=0.28  Score=12.38  Aligned_cols=21  Identities=24%  Similarity=0.640  Sum_probs=15.0

Q ss_pred             eeccc--cccccccchhHHHHhH
Q psy4412           7 YACLW--CDYHTLNSGHMRDHIR   27 (39)
Q Consensus         7 ~~c~~--c~~~~~~~~~~~~~~~   27 (39)
                      +.|+.  |.-.|.....+..|..
T Consensus         3 f~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           3 FTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             EECSSSSCCCEESSHHHHHHHHH
T ss_pred             ccccCCCcceEEeehHHHHHHHh
Confidence            44443  7788888888888753

>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulfoferrodoxin N-terminal domain
species: Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]

Probab=82.38  E-value=0.26  Score=13.40  Aligned_cols=11  Identities=27%  Similarity=0.706  Sum_probs=8.4

Q ss_pred             ceecccccccc
Q psy4412           6 LYACLWCDYHT   16 (39)
Q Consensus         6 ~~~c~~c~~~~   16 (39)
                      -|.|..|++..
T Consensus         6 vYkC~~CGNiV   16 (37)
T d1vzia2           6 VYKCEVCGNIV   16 (37)
T ss_dssp             EEECTTTCCEE
T ss_pred             EEEecccCcEE
Confidence            47899998754

>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Pinch (particularly interesting new Cys-His) protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.17  E-value=0.27  Score=13.05  Aligned_cols=10  Identities=30%  Similarity=0.657  Sum_probs=6.5

Q ss_pred             eccccccccc
Q psy4412           8 ACLWCDYHTL   17 (39)
Q Consensus         8 ~c~~c~~~~~   17 (39)
                      .|-.|++.|.
T Consensus         2 vCA~CekPF~   11 (35)
T d1u5sb2           2 VCAKCEKPFL   11 (35)
T ss_dssp             BCTTTCCBCS
T ss_pred             cccccCCccC
Confidence            4667777664

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.79  E-value=0.35  Score=12.84  Aligned_cols=24  Identities=21%  Similarity=0.490  Sum_probs=18.6

Q ss_pred             CcceeccccccccccchhHHHHhH
Q psy4412           4 TYLYACLWCDYHTLNSGHMRDHIR   27 (39)
Q Consensus         4 ~~~~~c~~c~~~~~~~~~~~~~~~   27 (39)
                      .+.|.|..|-+=......+..|+.
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHH
Confidence            356889999887777777887764

>d1wjva2 g.37.1.2 (A:36-66) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Cell growth regulating nucleolar protein LyaR
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.54  E-value=0.25  Score=12.93  Aligned_cols=12  Identities=17%  Similarity=0.490  Sum_probs=9.5

Q ss_pred             eecccccccccc
Q psy4412           7 YACLWCDYHTLN   18 (39)
Q Consensus         7 ~~c~~c~~~~~~   18 (39)
                      +.|..|++.|..
T Consensus         3 ~sCiDC~~~F~~   14 (31)
T d1wjva2           3 LSCIDCGKDFWG   14 (31)
T ss_dssp             EEETTTTEEEEG
T ss_pred             EEEeecCCccCC
Confidence            578899998854

>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulforedoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=81.50  E-value=0.3  Score=13.20  Aligned_cols=11  Identities=27%  Similarity=0.760  Sum_probs=8.5

Q ss_pred             ceecccccccc
Q psy4412           6 LYACLWCDYHT   16 (39)
Q Consensus         6 ~~~c~~c~~~~   16 (39)
                      -|.|..|++..
T Consensus         6 vYkC~~CGNiV   16 (36)
T d1dxga_           6 VYKCELCGQVV   16 (36)
T ss_dssp             EEECTTTCCEE
T ss_pred             EEEeccCCcEE
Confidence            48899998754