Psyllid ID: psy4429

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------

MGSTDEINSGVPITKSKYVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM

cccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEccEEEcccEEEEEEEEccHHHHHHHHHHcccccEEEEEEEEcccccccccccccccccccccEEEEEccccHHHHHHHHHHccccccccEEEEEcccc

cccccccccccccccccccccccccccEEEccEcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEEEcccEEEEEEccHHHHHHHHHHHHcccccEEEEEEEEccccccEEEHHHHHcccccEEEEEEEEccccccEEEEEEEccccHHHcEEEEEccEc

mgstdeinsgvpitkskyvsftedipnlkilpsndQVRELQTILrdkntsrsdfKFFADRLIRLVIEESlnqlpfskmdivtptgatyhglkyergncgvsvirsgeAMEQGLRDCCRSIRIgkiliesdadtHEARIGLRDCCRSIRigkiliesdadtHEARIVYARFPEDIAQRKVLLMYPIM

mgstdeinsgvpitkskyvsftedipnlkilpsndqvRELQTilrdkntsrsdfKFFADRLIRLVIEEslnqlpfskmdivTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKiliesdadtheaRIGLRDCCRSIRIGKiliesdadthEARIVYARFPEDIAQRKVLLMYPIM

MGSTDEINSGVPITKSKYVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM

****************KYVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMY***

**************************NLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM

MGSTDEINSGVPITKSKYVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM

*******************SFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MGSTDEINSGVPITKSKYVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		186	2.2.26 [Sep-21-2011]
Q6NYU7		257	Uracil phosphoribosyltran	yes	N/A	0.720	0.521	0.596	4e-51
Q32LA4		306	Uracil phosphoribosyltran	yes	N/A	0.709	0.431	0.584	1e-48
B1AVZ0		310	Uracil phosphoribosyltran	yes	N/A	0.715	0.429	0.581	1e-48
Q5ZIJ8		277	Uracil phosphoribosyltran	yes	N/A	0.715	0.480	0.581	2e-48
Q96BW1		309	Uracil phosphoribosyltran	yes	N/A	0.715	0.430	0.581	2e-48
Q95KB0		309	Uracil phosphoribosyltran	N/A	N/A	0.715	0.430	0.581	2e-48
Q9FKS0		486	Uridine kinase-like prote	yes	N/A	0.715	0.273	0.428	2e-32
Q8VYB2		466	Uridine kinase-like prote	no	N/A	0.715	0.285	0.409	3e-32
O65583		469	Uridine kinase-like prote	no	N/A	0.715	0.283	0.409	4e-32
P18562		216	Uracil phosphoribosyltran	yes	N/A	0.741	0.638	0.406	1e-31

>sp\|Q6NYU7\|UPP_DANRE Uracil phosphoribosyltransferase homolog OS=Danio rerio GN=uprt PE=2 SV=1	Back alignment and function desciption

 Score =  200 bits (509), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 117/161 (72%), Gaps = 27/161 (16%)

Query: 26  PNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTG 85
           P LK+LP NDQ+RELQTI+RDK TSR DF F ADRLIRLV+EE LNQLP+S+  + TPTG
Sbjct: 56  PQLKLLPLNDQIRELQTIIRDKTTSRGDFVFCADRLIRLVVEEGLNQLPYSECTVTTPTG 115

Query: 86  ATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCR 145
             Y G+K+E+GNCGVS++RSGEAMEQGLRD                           CCR
Sbjct: 116 HKYEGVKFEKGNCGVSIMRSGEAMEQGLRD---------------------------CCR 148

Query: 146 SIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
           SIRIGKILI+SD +T +A++ YA+FP DI++RKVLLMYPI+
Sbjct: 149 SIRIGKILIQSDEETQKAKVYYAKFPPDISRRKVLLMYPIL 189

Danio rerio (taxid: 7955)

>sp\|Q32LA4\|UPP_BOVIN Uracil phosphoribosyltransferase homolog OS=Bos taurus GN=UPRT PE=2 SV=1	Back alignment and function description

>sp\|B1AVZ0\|UPP_MOUSE Uracil phosphoribosyltransferase homolog OS=Mus musculus GN=Uprt PE=2 SV=1	Back alignment and function description

>sp\|Q5ZIJ8\|UPP_CHICK Uracil phosphoribosyltransferase homolog OS=Gallus gallus GN=UPRT PE=2 SV=1	Back alignment and function description

>sp\|Q96BW1\|UPP_HUMAN Uracil phosphoribosyltransferase homolog OS=Homo sapiens GN=UPRT PE=2 SV=1	Back alignment and function description

>sp\|Q95KB0\|UPP_MACFA Uracil phosphoribosyltransferase homolog OS=Macaca fascicularis GN=UPRT PE=2 SV=1	Back alignment and function description

>sp\|Q9FKS0\|UKL1_ARATH Uridine kinase-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=UKL1 PE=1 SV=1	Back alignment and function description

>sp\|Q8VYB2\|UKL3_ARATH Uridine kinase-like protein 3 OS=Arabidopsis thaliana GN=UKL3 PE=1 SV=1	Back alignment and function description

>sp\|O65583\|UKL4_ARATH Uridine kinase-like protein 4 OS=Arabidopsis thaliana GN=UKL4 PE=1 SV=2	Back alignment and function description

>sp\|P18562\|UPP_YEAST Uracil phosphoribosyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FUR1 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		186
242007915		228	Uracil phosphoribosyltransferase, putati	0.715	0.583	0.718	2e-60
383865225		241	PREDICTED: uracil phosphoribosyltransfer	0.822	0.634	0.643	9e-60
340711769		241	PREDICTED: uracil phosphoribosyltransfer	0.720	0.556	0.695	1e-59
328778802		254	PREDICTED: uracil phosphoribosyltransfer	0.822	0.602	0.638	1e-59
350402559		258	PREDICTED: LOW QUALITY PROTEIN: uracil p	0.720	0.519	0.695	1e-59
156544105		269	PREDICTED: uracil phosphoribosyltransfer	0.854	0.591	0.619	2e-59
307204329		226	Uracil phosphoribosyltransferase [Harpeg	0.822	0.676	0.628	3e-59
307189892		223	Uracil phosphoribosyltransferase [Campon	0.811	0.677	0.626	6e-59
322785833		252	hypothetical protein SINV_06976 [Solenop	0.811	0.599	0.621	1e-58
332025152		237	Uracil phosphoribosyltransferase [Acromy	0.715	0.561	0.687	4e-58

>gi\|242007915\|ref\|XP_002424761.1\| Uracil phosphoribosyltransferase, putative [Pediculus humanus corporis] gi\|212508275\|gb\|EEB12023.1\| Uracil phosphoribosyltransferase, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/160 (71%), Positives = 129/160 (80%), Gaps = 27/160 (16%)

Query: 27  NLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGA 86
           NLKILP NDQ+RELQTI+RD+NT+RSDFKF+ADRLIRLVIEESLNQLPFSK ++VTPTGA
Sbjct: 30  NLKILPPNDQIRELQTIIRDRNTTRSDFKFYADRLIRLVIEESLNQLPFSKCEVVTPTGA 89

Query: 87  TYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRS 146
           TY GLKY++GNCGVS+IRSGEAMEQGLRDCCRSIRIGKILIESD+DT             
Sbjct: 90  TYQGLKYKKGNCGVSIIRSGEAMEQGLRDCCRSIRIGKILIESDSDT------------- 136

Query: 147 IRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
                         HEA++VYARFP+DIA RKVLLMYPIM
Sbjct: 137 --------------HEAKVVYARFPDDIADRKVLLMYPIM 162

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|383865225\|ref\|XP_003708075.1\| PREDICTED: uracil phosphoribosyltransferase homolog [Megachile rotundata]	Back alignment and taxonomy information

>gi\|340711769\|ref\|XP_003394441.1\| PREDICTED: uracil phosphoribosyltransferase homolog [Bombus terrestris]	Back alignment and taxonomy information

>gi\|328778802\|ref\|XP_624333.2\| PREDICTED: uracil phosphoribosyltransferase homolog isoform 2 [Apis mellifera] gi\|380030086\|ref\|XP_003698689.1\| PREDICTED: uracil phosphoribosyltransferase homolog [Apis florea]	Back alignment and taxonomy information

>gi\|350402559\|ref\|XP_003486529.1\| PREDICTED: LOW QUALITY PROTEIN: uracil phosphoribosyltransferase homolog [Bombus impatiens]	Back alignment and taxonomy information

>gi\|156544105\|ref\|XP_001605649.1\| PREDICTED: uracil phosphoribosyltransferase homolog [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|307204329\|gb\|EFN83084.1\| Uracil phosphoribosyltransferase [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|307189892\|gb\|EFN74136.1\| Uracil phosphoribosyltransferase [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|322785833\|gb\|EFZ12452.1\| hypothetical protein SINV_06976 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|332025152\|gb\|EGI65332.1\| Uracil phosphoribosyltransferase [Acromyrmex echinatior]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		186
FB\|FBgn0035639		261	CG5537 [Drosophila melanogaste	0.698	0.498	0.717	1.6e-45
ZFIN\|ZDB-GENE-040426-2411		257	uprt "uracil phosphoribosyltra	0.607	0.439	0.716	6.6e-42
UNIPROTKB\|Q5ZIJ8		277	UPRT "Uracil phosphoribosyltra	0.596	0.400	0.702	3.3e-40
UNIPROTKB\|Q32LA4		306	UPRT "Uracil phosphoribosyltra	0.596	0.362	0.702	4.2e-40
UNIPROTKB\|Q96BW1		309	UPRT "Uracil phosphoribosyltra	0.596	0.359	0.702	4.2e-40
MGI\|MGI:2685620		310	Uprt "uracil phosphoribosyltra	0.596	0.358	0.702	4.2e-40
RGD\|1564806		309	Uprt "uracil phosphoribosyltra	0.596	0.359	0.702	4.2e-40
WB\|WBGene00008131		231	C47B2.2.2 [Caenorhabditis eleg	0.602	0.484	0.580	4.9e-30
ASPGD\|ASPL0000077951		249	AN8869 [Emericella nidulans (t	0.693	0.518	0.492	7.9e-30
UNIPROTKB\|E9PSD7		173	UPRT "Uracil phosphoribosyltra	0.446	0.479	0.698	9.1e-29

FB\|FBgn0035639 CG5537 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 94/131 (71%), Positives = 108/131 (82%)

Query:     8 NSGVPITKSKYVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIE 67
             ++ VP   S+ +   E   NLK+L  N QV EL TILRDKNT+RSDFKF+ADRLIRLVIE
Sbjct:    43 HAAVPAATSEEI-LAEYGSNLKLLECNSQVAELLTILRDKNTTRSDFKFYADRLIRLVIE 101

Query:    68 ESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILI 127
             ESLNQLP++  D+ TPTGA Y GLKY  GNCGVS+IRSGEAMEQGLRDCCRSIRIGKIL+
Sbjct:   102 ESLNQLPYTHCDVETPTGAIYEGLKYRSGNCGVSIIRSGEAMEQGLRDCCRSIRIGKILV 161

Query:   128 ESDADTHEARI 138
             ESDA+THEAR+
Sbjct:   162 ESDANTHEARV 172

GO:0004845 "uracil phosphoribosyltransferase activity" evidence=ISS

ZFIN\|ZDB-GENE-040426-2411 uprt "uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZIJ8 UPRT "Uracil phosphoribosyltransferase homolog" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q32LA4 UPRT "Uracil phosphoribosyltransferase homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96BW1 UPRT "Uracil phosphoribosyltransferase homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2685620 Uprt "uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1564806 Uprt "uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

WB\|WBGene00008131 C47B2.2.2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000077951 AN8869 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PSD7 UPRT "Uracil phosphoribosyltransferase homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96BW1	UPP_HUMAN	No assigned EC number	0.5812	0.7150	0.4304	yes	N/A
Q6NYU7	UPP_DANRE	No assigned EC number	0.5962	0.7204	0.5214	yes	N/A
B1AVZ0	UPP_MOUSE	No assigned EC number	0.5812	0.7150	0.4290	yes	N/A
O13867	UPP1_SCHPO	2, ., 4, ., 2, ., 9	0.3988	0.7580	0.6438	yes	N/A
Q5ZIJ8	UPP_CHICK	No assigned EC number	0.5812	0.7150	0.4801	yes	N/A
P18562	UPP_YEAST	2, ., 4, ., 2, ., 9	0.4060	0.7419	0.6388	yes	N/A
Q55GQ6	UPP_DICDI	2, ., 4, ., 2, ., 9	0.4125	0.7150	0.6157	yes	N/A
Q32LA4	UPP_BOVIN	No assigned EC number	0.5849	0.7096	0.4313	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		186
COG0035		210	COG0035, Upp, Uracil phosphoribosyltransferase [Nu	1e-26
TIGR01091		207	TIGR01091, upp, uracil phosphoribosyltransferase	1e-07
PRK00129		209	PRK00129, upp, uracil phosphoribosyltransferase; R	6e-06

>gnl\|CDD\|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]	Back alignment and domain information

 Score =  100 bits (251), Expect = 1e-26
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 27/151 (17%)

Query: 36  QVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYER 95
            V+   TILRDKNT   +F+   D + RL+  E+   LP  K++I TP G T       +
Sbjct: 11  LVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLGPTEGVQIAGK 70

Query: 96  GNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIE 155
               V ++R+G  M +GL     S R+G I I  D    E                    
Sbjct: 71  KIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRD---EE-------------------- 107

Query: 156 SDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
               T E  + Y + PEDI +R V+++ P++
Sbjct: 108 ----TLEPVLYYEKLPEDIDERTVIVLDPML 134

Length = 210

>gnl\|CDD\|130163 TIGR01091, upp, uracil phosphoribosyltransferase	Back alignment and domain information

>gnl\|CDD\|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		186
COG0035		210	Upp Uracil phosphoribosyltransferase [Nucleotide t	100.0
PF14681		207	UPRTase: Uracil phosphoribosyltransferase; PDB: 1V	100.0
PLN02541		244	uracil phosphoribosyltransferase	100.0
KOG1017\|consensus		267		100.0
TIGR01091		207	upp uracil phosphoribosyltransferase. that include	100.0
PRK00129		209	upp uracil phosphoribosyltransferase; Reviewed	100.0
KOG4203\|consensus		473		99.91
TIGR01203		166	HGPRTase hypoxanthine phosphoribosyltransferase. S	97.75
PLN02369		302	ribose-phosphate pyrophosphokinase	97.33
PRK05205		176	bifunctional pyrimidine regulatory protein PyrR ur	97.13
PRK03092		304	ribose-phosphate pyrophosphokinase; Provisional	95.7
PTZ00271		211	hypoxanthine-guanine phosphoribosyltransferase; Pr	91.79
PRK15423		178	hypoxanthine phosphoribosyltransferase; Provisiona	90.04
PTZ00149		241	hypoxanthine phosphoribosyltransferase; Provisiona	88.08
PLN02238		189	hypoxanthine phosphoribosyltransferase	87.62
PRK02812		330	ribose-phosphate pyrophosphokinase; Provisional	87.46
PF00156		125	Pribosyltran: Phosphoribosyl transferase domain; I	85.06
PRK09162		181	hypoxanthine-guanine phosphoribosyltransferase; Pr	84.16
TIGR01251		308	ribP_PPkin ribose-phosphate pyrophosphokinase. In	83.19

>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=6.1e-42  Score=289.71  Aligned_cols=132  Identities=34%  Similarity=0.561  Sum_probs=127.0

Q ss_pred             CCeEEeCCchHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeee-ccceeeeecc
Q psy4429          26 PNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYE-RGNCGVSVIR  104 (186)
Q Consensus        26 ~nl~vl~~~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~-~~ic~VsILR  104 (186)
                      .+++++ +||+++|++|+|||++|++++||++++||+++|+|||+++||+++.+|+||.|. ++|..+. +++|+|||||
T Consensus         2 ~~v~vi-~hpli~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~~-~~~~~~~~~~i~~V~ILR   79 (210)
T COG0035           2 MNVYVI-DHPLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLGP-TEGVQIAGKKIVIVPILR   79 (210)
T ss_pred             CceEEe-CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCcCceeEEEEECCCcc-eeeeeecCCcEEEEEEee
Confidence            467788 899999999999999999999999999999999999999999999999999995 6899997 5599999999


Q ss_pred             cchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCCCCeEEEECC
Q psy4429         105 SGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYP  184 (186)
Q Consensus       105 AG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~~~~VlllDP  184 (186)
                      ||++|++|+++++|+|++|||                           |+|||++|++|..||.|||++++++.|+|+||
T Consensus        80 AGl~m~~gl~~~~P~a~vG~i---------------------------g~~Rdeet~~p~~yy~KLP~~~~~~~viv~DP  132 (210)
T COG0035          80 AGLGMVEGLLKLIPSARVGHI---------------------------GIYRDEETLEPVLYYEKLPEDIDERTVIVLDP  132 (210)
T ss_pred             ccccHHHHHHHhCCcceEEEE---------------------------EEEecCccCceehhHHhCCCcccCCeEEEECc
Confidence            999999999999999999999                           99999999999999999999999999999999


Q ss_pred             CC
Q psy4429         185 IM  186 (186)
Q Consensus       185 mL  186 (186)
                      ||
T Consensus       133 ML  134 (210)
T COG0035         133 ML  134 (210)
T ss_pred             hh
Confidence            97

>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C	Back alignment and domain information

>PLN02541 uracil phosphoribosyltransferase	Back alignment and domain information

>KOG1017\|consensus	Back alignment and domain information

>TIGR01091 upp uracil phosphoribosyltransferase	Back alignment and domain information

>PRK00129 upp uracil phosphoribosyltransferase; Reviewed	Back alignment and domain information

>KOG4203\|consensus	Back alignment and domain information

>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase	Back alignment and domain information

>PLN02369 ribose-phosphate pyrophosphokinase	Back alignment and domain information

>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK03092 ribose-phosphate pyrophosphokinase; Provisional	Back alignment and domain information

>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional	Back alignment and domain information

>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional	Back alignment and domain information

>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional	Back alignment and domain information

>PLN02238 hypoxanthine phosphoribosyltransferase	Back alignment and domain information

>PRK02812 ribose-phosphate pyrophosphokinase; Provisional	Back alignment and domain information

>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate	Back alignment and domain information

>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional	Back alignment and domain information

>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		186
1upu_D		224	Structure Of The Uracil Phosphoribosyltransferase,		5e-33
1bd3_D		243	Structure Of The Apo Uracil Phosphoribosyltransfera		5e-33
1o5o_A		221	Crystal Structure Of Uracil Phosphoribosyltransfera		8e-04
1i5e_A		209	Crystal Structure Of Bacillus Caldolyticus Uracil P		9e-04

>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant C128v, Bound To Product Uridine-1-Monophosphate (Ump) Length = 224

Back alignment and structure

Iteration: 1

Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 27/160 (16%) Query: 26 PNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTG 85 PN+ ++ Q+R + TI+RDK T + +F F+ADRLIRL+IEE+LN+LPF K ++ TP Sbjct: 14 PNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLD 73 Query: 86 ATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCR 145 +YHG+ + CGVS++R+GE+ME GLR CR +RIGKI Sbjct: 74 VSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKI-------------------- 113 Query: 146 SIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPI 185 LI+ D T E +++Y + P DI +R V+L+ P+ Sbjct: 114 -------LIQRDETTAEPKLIYEKLPADIRERWVMLLDPM 146

PyMOL of 1upu

>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2 Mutant C128v Length = 243

Back alignment and structure

>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase (Tm0721) From Thermotoga Maritima At 2.30 A Resolution Length = 221

Back alignment and structure

>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil Phosphoribosyltransferase With Bound Ump Length = 209

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		186
1bd3_D		243	Uprtase, uracil phosphoribosyltransferase; glycosy	5e-37
3dmp_A		217	Uracil phosphoribosyltransferase; structural genom	1e-31
1i5e_A		209	Uracil phosphoribosyltransferase; salvage pathway;	1e-30
1o5o_A		221	Uracil phosphoribosyltransferase; TM0721, structur	1e-30
1v9s_A		208	Uracil phosphoribosyltransferase; pyrimidine salva	2e-30
2e55_A		208	Uracil phosphoribosyltransferase; structural genom	7e-30
2ehj_A		208	Uracil phosphoribosyltransferase; structural genom	6e-27
1xtt_A		216	Probable uracil phosphoribosyltransferase; tetrame	6e-24
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D* Length = 243	Back alignment and structure

 Score =  127 bits (320), Expect = 5e-37
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 27/164 (16%)

Query: 23  EDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVT 82
              PN+ ++    Q+R + TI+RDK T + +F F+ADRLIRL+IEE+LN+LPF K ++ T
Sbjct: 30  TRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTT 89

Query: 83  PTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRD 142
           P   +YHG+ +    CGVS++R+GE+ME                            GLR 
Sbjct: 90  PLDVSYHGVSFYSKICGVSIVRAGESMES---------------------------GLRA 122

Query: 143 CCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
            CR +RIGKILI+ D  T E +++Y + P DI +R V+L+ P+ 
Sbjct: 123 VCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMC 166

PyMOL of 1bd3

>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} Length = 217	Back alignment and structure

>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1 Length = 209	Back alignment and structure

>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1 Length = 221	Back alignment and structure

>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1 Length = 208	Back alignment and structure

>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus} Length = 208	Back alignment and structure

>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli} Length = 208	Back alignment and structure

>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A* Length = 216	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		186
1bd3_D		243	Uprtase, uracil phosphoribosyltransferase; glycosy	100.0
3dmp_A		217	Uracil phosphoribosyltransferase; structural genom	100.0
1xtt_A		216	Probable uracil phosphoribosyltransferase; tetrame	100.0
1v9s_A		208	Uracil phosphoribosyltransferase; pyrimidine salva	100.0
2ehj_A		208	Uracil phosphoribosyltransferase; structural genom	100.0
1o5o_A		221	Uracil phosphoribosyltransferase; TM0721, structur	100.0
2e55_A		208	Uracil phosphoribosyltransferase; structural genom	100.0
1i5e_A		209	Uracil phosphoribosyltransferase; salvage pathway;	100.0
3ozf_A		250	Hypoxanthine-guanine-xanthine phosphoribosyltrans;	96.06
3ohp_A		177	Hypoxanthine phosphoribosyltransferase; structural	96.02
2ywu_A		181	Hypoxanthine-guanine phosphoribosyltransferase; ro	95.36
3o7m_A		186	Hypoxanthine phosphoribosyltransferase; hypoxanthi	95.28
3hvu_A		204	Hypoxanthine phosphoribosyltransferase; hypoxanthi	95.24
1z7g_A		217	HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribos	94.94
2jbh_A		225	Phosphoribosyltransferase domain-containing prote;	94.19
1w30_A		201	PYRR bifunctional protein; transferase, glycosyltr	93.77
2geb_A		185	Hypoxanthine-guanine phosphoribosyltransferase; HG	93.54
1vdm_A		153	Purine phosphoribosyltransferase; structural genom	93.32
1tc1_A		220	Protein (hypoxanthine phosphoribosyltransferase);	91.56
1hgx_A		183	HGXPRTASE, hypoxanthine-guanine-xanthine phosphori	91.46
1pzm_A		211	HGPRT, hypoxanthine-guanine phosphoribosyltransfer	91.18
1dku_A		317	Protein (phosphoribosyl pyrophosphate synthetase);	90.85
1fsg_A		233	HGPRTASE, hypoxanthine-guanine phosphoribosyltrans	90.57
1yfz_A		205	Hypoxanthine-guanine phosphoribosyltransferase; pr	90.18
1a3c_A		181	PYRR, pyrimidine operon regulatory protein PYRR; t	89.63
1ufr_A		181	TT1027, PYR mRNA-binding attenuation protein; pyri	89.02
3acd_A		181	Hypoxanthine-guanine phosphoribosyltransferase; ro	87.35
1u9y_A		284	RPPK;, ribose-phosphate pyrophosphokinase; PRPP sy	83.03
2xbu_A		221	Hypoxanthine-guanine phosphoribosyltransferase; gl	80.42

>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*	Back alignment and structure

Probab=100.00  E-value=5.2e-40  Score=281.10  Aligned_cols=142  Identities=46%  Similarity=0.885  Sum_probs=136.4

Q ss_pred             ccccccCCCCeEEeCCchHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeeeccc
Q psy4429          18 YVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGN   97 (186)
Q Consensus        18 ~~~~~~~~~nl~vl~~~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~~~i   97 (186)
                      .++.+..++|++++++||++++++|+|||++|++.+||++++||++||+|||+++||+++.+|+||+|.+|.|..+++++
T Consensus        25 ~~~~~~~~~~v~~~~~hp~i~~~lt~lRd~~t~~~~Fr~~~~rl~~ll~yEa~~~lp~~~~~v~TP~g~~~~g~~~~~~l  104 (243)
T 1bd3_D           25 LQDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKI  104 (243)
T ss_dssp             HHHHHHHCTTEEECCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEECTTSCEEEEEEECCCE
T ss_pred             ccccccCCCcEEEecCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeEEEECCCcceEeeeeccCcE
Confidence            34455677999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             eeeeecccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCCCC
Q psy4429          98 CGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQR  177 (186)
Q Consensus        98 c~VsILRAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~~~  177 (186)
                      |+|+|||||.+|++++++++|++++|||                           +++||+.|++|++||.|+|.+++++
T Consensus       105 ~~V~ILRaG~~m~~~l~~~ip~a~vg~I---------------------------~~~Rd~~t~~~~~~~~~lp~di~~r  157 (243)
T 1bd3_D          105 CGVSIVRAGESMESGLRAVCRGVRIGKI---------------------------LIQRDETTAEPKLIYEKLPADIRER  157 (243)
T ss_dssp             EEEEEETTTHHHHHHHHHHSTTCCEEEE---------------------------EEEECSSSCCEEEEEEECCTTGGGS
T ss_pred             EEEEEEcchHHHHHHHHHhCCcCeeeeE---------------------------EEEEcCCCCCeEEEeccCCcccCCC
Confidence            9999999999999999999999999999                           9999999999999999999999999


Q ss_pred             eEEEECCCC
Q psy4429         178 KVLLMYPIM  186 (186)
Q Consensus       178 ~VlllDPmL  186 (186)
                      .|+|+||||
T Consensus       158 ~VilvDdml  166 (243)
T 1bd3_D          158 WVMLLDPMC  166 (243)
T ss_dssp             EEEEECSEE
T ss_pred             EEEEECCcc
Confidence            999999996

PyMOL of 1bd3

>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1	Back alignment and structure

>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*	Back alignment and structure

>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1	Back alignment and structure

>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}	Back alignment and structure

>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1	Back alignment and structure

>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}	Back alignment and structure

>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1	Back alignment and structure

>3ozf_A Hypoxanthine-guanine-xanthine phosphoribosyltrans; transferase-transferase inhibitor complex; HET: HPA; 1.94A {Plasmodium falciparum fcr-3} PDB: 3ozg_A* 1cjb_A*	Back alignment and structure

>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A	Back alignment and structure

>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, salvage of nucleosides and nucleotides; HET: GOL; 1.98A {Bacillus anthracis} SCOP: c.61.1.0	Back alignment and structure

>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, 2-(N-morphol ethanesulfonic acid (MES), IDP01892; HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*	Back alignment and structure

>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; flexibility, trans CIS peptide bond isomerization, nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1 PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A* 2vfa_A*	Back alignment and structure

>2jbh_A Phosphoribosyltransferase domain-containing prote; glycosyltransferase, purine salvage; HET: 5GP; 1.7A {Homo sapiens}	Back alignment and structure

>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI, protein structure initiative, TB structural genomics consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP: c.61.1.1	Back alignment and structure

>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis}	Back alignment and structure

>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1	Back alignment and structure

>1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*	Back alignment and structure

>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1	Back alignment and structure

>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1	Back alignment and structure

>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*	Back alignment and structure

>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A	Back alignment and structure

>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*	Back alignment and structure

>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding P pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*	Back alignment and structure

>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1	Back alignment and structure

>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*	Back alignment and structure

>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*	Back alignment and structure

>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage, FLIP pepti; HET: 5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A* 2jky_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		186
d1bd3a_		224	c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondi	2e-30
d1i5ea_		208	c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldoly	1e-25
d1o5oa_		210	c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga marit	6e-25
d1v9sa1		208	c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus the	2e-24
d1xtta1		215	c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus	1e-22

>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]} Length = 224	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Toxoplasma gondii [TaxId: 5811]

 Score =  108 bits (272), Expect = 2e-30
 Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 27/172 (15%)

Query: 15  KSKYVSFTEDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLP 74
           +S         PN+ ++    Q+R + TI+RDK T + +F F+ADRLIRL+IEE+LN+LP
Sbjct: 3   ESILQDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELP 62

Query: 75  FSKMDIVTPTGATYHGLKYERGNCGVSVIRSGEAMEQGLRDCCRSIRIGKILIESDADTH 134
           F K ++ TP   +YHG+ +    CGVS++R+GE+ME                        
Sbjct: 63  FQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMES----------------------- 99

Query: 135 EARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLMYPIM 186
               GLR  CR +RIGKILI+ D  T E +++Y + P DI +R V+L+ P+ 
Sbjct: 100 ----GLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMC 147

PyMOL of d1bd3a_

>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]} Length = 208	Back information, alignment and structure

>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]} Length = 210	Back information, alignment and structure

>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]} Length = 208	Back information, alignment and structure

>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId: 2287]} Length = 215	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		186
d1bd3a_		224	Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811	100.0
d1i5ea_		208	Uracil PRTase, Upp {Bacillus caldolyticus [TaxId:	100.0
d1o5oa_		210	Uracil PRTase, Upp {Thermotoga maritima [TaxId: 23	100.0
d1v9sa1		208	Uracil PRTase, Upp {Thermus thermophilus [TaxId: 2	100.0
d1xtta1		215	Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId	100.0
d1vdma1		153	Pprobable purine phosphoribosyltransferase PH0095	94.87
d1hgxa_		173	Hypoxanthine-guanine-xanthine PRTase {Tritrichomon	93.77
d1pzma_		183	Hypoxanthine-guanine-xanthine PRTase {Leishmania t	93.33
d1tc1a_		184	Hypoxanthine PRTase {Trypanosoma cruzi [TaxId: 569	92.87
d1a3ca_		178	Pyrimidine operon regulator PyrR {Bacillus subtili	92.04
d1j7ja_		172	Hypoxanthine PRTase {Salmonella typhimurium [TaxId	91.78
d1yfza1		178	Xanthine-guanine PRTase (XPRTase) {Thermoanaerobac	91.7
d1nula_		150	Xanthine-guanine PRTase (XPRTase) {Escherichia col	89.61
d1z7ga1		214	Hypoxanthine-guanine PRTase (HGPRTase) {Human (Hom	88.45
d1dqna_		230	Guanine PRTase {Giardia lamblia [TaxId: 5741]}	87.56
d1w30a_		182	Pyrimidine operon regulator PyrR {Mycobacterium tu	85.9
d1ufra_		178	Pyrimidine operon regulator PyrR {Thermus thermoph	85.75

>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Uracil PRTase, Upp
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=2e-45  Score=309.18  Aligned_cols=137  Identities=47%  Similarity=0.919  Sum_probs=133.7

Q ss_pred             cCCCCeEEeCCchHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhcCCCCeeEEeeCCCCceeeeeeeeccceeeee
Q psy4429          23 EDIPNLKILPSNDQVRELQTILRDKNTSRSDFKFFADRLIRLVIEESLNQLPFSKMDIVTPTGATYHGLKYERGNCGVSV  102 (186)
Q Consensus        23 ~~~~nl~vl~~~p~l~~~lTiLRD~~T~~~~Fr~~~~rL~rLL~eeAl~~Lp~~~~~V~TP~g~~~~G~~~~~~ic~VsI  102 (186)
                      ..+||++++++|||+++++|+|||++|++.+||++++||+++|+|||+++||+++++|+||+|.++.|..+.+++|+|||
T Consensus        11 ~r~pnv~vl~~~p~i~~~lTiLRd~~T~~~~Fr~~~~ri~~lL~yEa~~~l~~~~~~V~TPlg~~~~~~~~~~~v~~V~I   90 (224)
T d1bd3a_          11 TRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSI   90 (224)
T ss_dssp             HHCTTEEECCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSCBCCEEEECTTSCEEEECCBCCCEEEEEE
T ss_pred             hhCCCeEEeCCCHHHHHHHHHhHCCCCChHHHHHHHHHHHHHHHHHHHhccCceEEEEECCCcccccceecCCceEEEee
Confidence            34689999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             cccchhHHHHHHhhccCceeEEEeeecCccchhhhcccccccccccccceeeecCCCcchhhhhhhcCCCCCCCCeEEEE
Q psy4429         103 IRSGEAMEQGLRDCCRSIRIGKILIESDADTHEARIGLRDCCRSIRIGKILIESDADTHEARIVYARFPEDIAQRKVLLM  182 (186)
Q Consensus       103 LRAG~~m~~gl~~~~p~a~iG~Il~~~~~~~~~~~~~~~~~~~~~~~g~~~i~rd~~T~~p~lyY~klP~~i~~~~Vlll  182 (186)
                      ||||++|++|+++++|+|++|||                           +++||++|++|+.||.|+|++++++.|+|+
T Consensus        91 LRAGl~m~~g~~~~~p~a~~g~i---------------------------~~~Rde~t~~p~~~y~klP~~i~~~~vil~  143 (224)
T d1bd3a_          91 VRAGESMESGLRAVCRGVRIGKI---------------------------LIQRDETTAEPKLIYEKLPADIRERWVMLL  143 (224)
T ss_dssp             ETGGGGGHHHHHHHSTTCCEEEE---------------------------EEEECTTTCCEEEEEEECCTTGGGSEEEEE
T ss_pred             ecccchhhhhHHhhCCCccceee---------------------------eeccccCCCCceeeHhhCCCccccceEEEe
Confidence            99999999999999999999999                           999999999999999999999999999999


Q ss_pred             CCCC
Q psy4429         183 YPIM  186 (186)
Q Consensus       183 DPmL  186 (186)
                      ||||
T Consensus       144 DPmL  147 (224)
T d1bd3a_         144 DPMC  147 (224)
T ss_dssp             CSEE
T ss_pred             ChHH
Confidence            9996

PyMOL of d1bd3a_

>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}	Back information, alignment and structure

>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1vdma1 c.61.1.1 (A:1-153) Pprobable purine phosphoribosyltransferase PH0095 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1hgxa_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase {Tritrichomonas foetus [TaxId: 5724]}	Back information, alignment and structure

>d1pzma_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase {Leishmania tarentolae [TaxId: 5689]}	Back information, alignment and structure

>d1tc1a_ c.61.1.1 (A:) Hypoxanthine PRTase {Trypanosoma cruzi [TaxId: 5693]}	Back information, alignment and structure

>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1j7ja_ c.61.1.1 (A:) Hypoxanthine PRTase {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1yfza1 c.61.1.1 (A:3-180) Xanthine-guanine PRTase (XPRTase) {Thermoanaerobacter tengcongensis [TaxId: 119072]}	Back information, alignment and structure

>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dqna_ c.61.1.1 (A:) Guanine PRTase {Giardia lamblia [TaxId: 5741]}	Back information, alignment and structure

>d1w30a_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1ufra_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure