Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 95
cd11566 84
cd11566, eIF1_SUI1, Eukaryotic initiation factor 1
2e-47 TIGR01160 110
TIGR01160, SUI1_MOF2, translation initiation facto
1e-43 pfam01253 74
pfam01253, SUI1, Translation initiation factor SUI
1e-19 COG0023 104
COG0023, SUI1, Translation initiation factor 1 (eI
2e-15 cd00474 78
cd00474, eIF1_SUI1_like, Eukaryotic initiation fac
3e-11 cd11607 86
cd11607, DENR_C, C-terminal domain of DENR and rel
1e-10 cd11567 76
cd11567, YciH_like, Homologs of eIF1/SUI1 includin
2e-09 cd11608 85
cd11608, eIF2D_C, C-terminal domain of eIF2D and r
5e-07 PRK00939 99
PRK00939, PRK00939, translation initiation factor
3e-06 TIGR01158 101
TIGR01158, SUI1_rel, translation initation factor
3e-06 TIGR01159 173
TIGR01159, DRP1, density-regulated protein DRP1
1e-04 PRK06824 118
PRK06824, PRK06824, translation initiation factor
6e-04 PRK09019 108
PRK09019, PRK09019, translation initiation factor
9e-04 PRK07451 115
PRK07451, PRK07451, translation initiation factor
0.002
>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1
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Score = 145 bits (369), Expect = 2e-47
Identities = 54/75 (72%), Positives = 66/75 (88%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQGL E+DLKKI++A KKEFACNGTV+E PEYGEV+QLQGDQR+NI ++L
Sbjct: 10 RNGRKTLTTVQGLPEEFDLKKILKAFKKEFACNGTVVEDPEYGEVIQLQGDQRKNIKEFL 69
Query: 80 TKTGLAKPEQLKVHG 94
+ G+AK + +KVHG
Sbjct: 70 LEEGIAKKDNIKVHG 84
eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. Length = 84
>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1, eukaryotic
Back Show alignment and domain information
Score = 137 bits (346), Expect = 1e-43
Identities = 57/76 (75%), Positives = 66/76 (86%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQGL EYDLKKIV+A KKEFACNGTVIE PE GEV+QLQGDQR+N+C++L
Sbjct: 35 RNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFL 94
Query: 80 TKTGLAKPEQLKVHGF 95
GL K +Q+K+HGF
Sbjct: 95 ISQGLLKKDQIKIHGF 110
Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation [Protein synthesis, Translation factors]. Length = 110
>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1
Back Show alignment and domain information
Score = 75.2 bits (186), Expect = 1e-19
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 20 RNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
R G KT+T V GL DLKK+ + KK+F C GTV + GE +++QGD R+ +
Sbjct: 14 RRGGKTVTVVTGLELFGIDLKKLAKELKKKFGCGGTVKD----GEEIEIQGDHRDKVKDL 69
Query: 79 LTKTG 83
L K G
Sbjct: 70 LEKEG 74
>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 65.0 bits (159), Expect = 2e-15
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 20 RNGRKTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
R KT+T ++GL + DLKK+ + KK+ AC GTV + GE+ ++QGD R+ + +
Sbjct: 36 RRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKD----GEI-EIQGDHRDKVKEL 90
Query: 79 LTKTGLAKPEQLKVH 93
L K G K + + +
Sbjct: 91 LIKKGF-KVKNIGIE 104
>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related proteins
Back Show alignment and domain information
Score = 54.0 bits (130), Expect = 3e-11
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
R+G K +T V+GL + DL+K+ KK+ C G+V E E+ ++QGD + I L
Sbjct: 9 RSGGKKVTKVEGLPAYIDLRKLADELKKKLGCGGSVE--GEKMEI-EIQGDHTDQIIVAL 65
Query: 80 TKTGLAK 86
+ G+ K
Sbjct: 66 EEKGIDK 72
Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear. Length = 78
>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins
Back Show alignment and domain information
Score = 52.6 bits (127), Expect = 1e-10
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 20 RNGRKTLTTVQGLSSEY-DLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
RN RK +TTV GL + DLKK + K+FAC +V + E + + +QGD ++I
Sbjct: 10 RNKRKFVTTVTGLETFGIDLKKAAKLFAKKFACGASVTKGAEGKDEIVIQGDVTDDIVDL 69
Query: 79 LTKT 82
+ +
Sbjct: 70 ILEK 73
DENR (density regulated protein), together with MCT-1 (multiple copies T cell malignancies), has been shown to have similar function as eIF2D translation initiation factor (also known as ligatin), which is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 86
>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH
Back Show alignment and domain information
Score = 49.0 bits (118), Expect = 2e-09
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 20 RNGRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
G KT+T ++GL SE DLK++ + KK+ C GTV + ++LQGD RE I +
Sbjct: 11 GRGGKTVTVIEGLPLSEEDLKELAKELKKKCGCGGTVKD-----GEIELQGDHREKIKEL 65
Query: 79 LTKTG 83
L K G
Sbjct: 66 LEKKG 70
Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. The function of non-eukaryotic family members is unclear. Escherichia coli YciH is a non-essential protein and was reported to be able to perform some of the functions of IF3 in prokaryotic initiation. Length = 76
>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins
Back Show alignment and domain information
Score = 42.9 bits (102), Expect = 5e-07
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 20 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTV--IEHPEYGEVLQLQGDQRENIC 76
R G K +T + GL S D ++ + +K+ A + +V + + G +Q+QG+Q + +
Sbjct: 9 RQGNKKVTLISGLESFGIDPEEFAKELQKKCAASTSVSPLPGKKKGVEVQVQGNQVKFVA 68
Query: 77 QWLTKTG 83
+ LT+
Sbjct: 69 KLLTEKY 75
eIF2D translation initiation factor (also known as ligatin) is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 85
>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed
Back Show alignment and domain information
Score = 41.4 bits (98), Expect = 3e-06
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 24 KTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKT 82
K +T ++G+ + DLK++ + K + AC GTV ++LQGD RE + + L K
Sbjct: 37 KEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV-----KDGRIELQGDHRERVKELLIKM 91
Query: 83 GLAKPEQLK 91
G E ++
Sbjct: 92 GF-SEENIE 99
>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative, prokaryotic
Back Show alignment and domain information
Score = 41.6 bits (98), Expect = 3e-06
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 20 RNGR--KTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENIC 76
GR K +T ++GL S+ DLK++ + K + C GTV + V+++QGD R+ +
Sbjct: 32 TRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKD-----GVIEIQGDHRDRVK 86
Query: 77 QWLTKTG 83
L K G
Sbjct: 87 DLLEKKG 93
This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met [Protein synthesis, Translation factors]. Length = 101
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1
Back Show alignment and domain information
Score = 38.3 bits (89), Expect = 1e-04
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 20 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
R RK +T ++GL + + DLKK + ++FA +V + E + +QGD ++I +
Sbjct: 98 RTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDY 157
Query: 79 LTKTGLAKPEQ 89
+ + ++
Sbjct: 158 IHEKWPEVGDK 168
This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs. Length = 173
>gnl|CDD|168689 PRK06824, PRK06824, translation initiation factor Sui1; Validated
Back Show alignment and domain information
Score = 35.8 bits (83), Expect = 6e-04
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 22 GRKTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 80
G KT+T + G+ +E LK++ + K+ GT+ + V+++QGD E + L
Sbjct: 53 GGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKDG-----VIEIQGDHVELLLAELL 107
Query: 81 KTG 83
K G
Sbjct: 108 KRG 110
>gnl|CDD|181613 PRK09019, PRK09019, translation initiation factor Sui1; Validated
Back Show alignment and domain information
Score = 35.0 bits (81), Expect = 9e-04
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 22 GRK--TLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQW 78
GRK + + GL + +LKK+ KK+ C G V + V+++QGD+R+ +
Sbjct: 41 GRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKDG-----VIEIQGDKRDLLKSL 95
Query: 79 LTKTG 83
L G
Sbjct: 96 LEAKG 100
>gnl|CDD|236021 PRK07451, PRK07451, translation initiation factor Sui1; Validated
Back Show alignment and domain information
Score = 34.4 bits (79), Expect = 0.002
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 20 RNGR--KTLTTVQGL-SSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENIC 76
R+GR KT+T + G L K+++ K + GTV + +++QGD R+ I
Sbjct: 46 RSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKD-----NTIEIQGDHRQKIL 100
Query: 77 QWLTKTG 83
+ L K G
Sbjct: 101 EILIKLG 107
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
95
TIGR01160 110
SUI1_MOF2 translation initiation factor SUI1, euka
99.97 KOG1770|consensus 112
99.96 COG0023 104
SUI1 Translation initiation factor 1 (eIF-1/SUI1)
99.96 cd00474 77
SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac
99.96 PRK00939 99
translation initiation factor Sui1; Reviewed
99.94 PF01253 83
SUI1: Translation initiation factor SUI1; InterPro
99.93 TIGR01158 101
SUI1_rel translation initation factor SUI1, putati
99.91 TIGR01159 173
DRP1 density-regulated protein DRP1. This protein
99.9 PRK06824 118
translation initiation factor Sui1; Validated
99.9 PRK09019 108
translation initiation factor Sui1; Validated
99.9 PRK07451 115
translation initiation factor Sui1; Validated
99.89 KOG3239|consensus 193
99.71 KOG2522|consensus 560
99.58 PF05046 87
Img2: Mitochondrial large subunit ribosomal protei
98.54 KOG4034|consensus 169
96.76 PRK03988 138
translation initiation factor IF-2 subunit beta; V
94.99 TIGR00311 133
aIF-2beta translation initiation factor aIF-2, bet
94.92 smart00653 110
eIF2B_5 domain present in translation initiation f
94.22 PRK14434 92
acylphosphatase; Provisional
93.8 PRK14451 89
acylphosphatase; Provisional
93.62 PRK12336 201
translation initiation factor IF-2 subunit beta; P
93.06 PRK14443 93
acylphosphatase; Provisional
92.41 PRK14444 92
acylphosphatase; Provisional
92.13 PRK14439 163
acylphosphatase; Provisional
91.6 PRK14446 88
acylphosphatase; Provisional
91.47 PRK14420 91
acylphosphatase; Provisional
91.43 PRK14425 94
acylphosphatase; Provisional
91.2 PRK14450 91
acylphosphatase; Provisional
91.11 PRK14426 92
acylphosphatase; Provisional
91.06 PRK14422 93
acylphosphatase; Provisional
90.65 PRK14432 93
acylphosphatase; Provisional
90.52 PRK14442 91
acylphosphatase; Provisional
90.43 PRK14433 87
acylphosphatase; Provisional
90.36 PRK14449 90
acylphosphatase; Provisional
90.17 PRK14428 97
acylphosphatase; Provisional
90.12 PRK14435 90
acylphosphatase; Provisional
90.04 PRK14438 91
acylphosphatase; Provisional
90.03 PRK14437 109
acylphosphatase; Provisional
89.99 PRK14429 90
acylphosphatase; Provisional
89.95 PF01873 125
eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro:
89.82 PRK14421 99
acylphosphatase; Provisional
89.8 PRK14427 94
acylphosphatase; Provisional
89.52 PRK14445 91
acylphosphatase; Provisional
89.42 PRK14430 92
acylphosphatase; Provisional
89.09 PRK14423 92
acylphosphatase; Provisional
88.72 PRK14436 91
acylphosphatase; Provisional
88.55 PRK14440 90
acylphosphatase; Provisional
88.31 PRK14447 95
acylphosphatase; Provisional
88.09 PRK14452 107
acylphosphatase; Provisional
87.71 PRK14441 93
acylphosphatase; Provisional
87.61 PF00708 91
Acylphosphatase: Acylphosphatase; InterPro: IPR001
87.47 PRK14431 89
acylphosphatase; Provisional
87.07 PRK14448 90
acylphosphatase; Provisional
86.74 PRK14424 94
acylphosphatase; Provisional
86.06
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic
Back Hide alignment and domain information
Probab=99.97 E-value=3.5e-32 Score=184.30 Aligned_cols=84 Identities=68% Similarity=1.063 Sum_probs=80.9
Q ss_pred CceEEEEEeeCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcEE
Q psy4461 12 DLLLLSLLRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 12 ~~~iri~~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I~ 91 (95)
.+|||+++|+|||.||+|+||+..+|+++|||.||++|||||||+++++++.+|+||||||++|++||.++||+++++|+
T Consensus 27 ~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~g~~~~~~i~ 106 (110)
T TIGR01160 27 YIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQGLLKKDQIK 106 (110)
T ss_pred eEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHcCCCCHHHee
Confidence 48999999999999999999998889999999999999999999998888889999999999999999999999999999
Q ss_pred EcCC
Q psy4461 92 VHGF 95 (95)
Q Consensus 92 vhg~ 95 (95)
+|||
T Consensus 107 vhg~ 110 (110)
T TIGR01160 107 IHGF 110 (110)
T ss_pred ecCC
Confidence 9997
Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
>KOG1770|consensus
Back Show alignment and domain information
Probab=99.96 E-value=2.2e-29 Score=169.12 Aligned_cols=84 Identities=64% Similarity=1.078 Sum_probs=82.1
Q ss_pred CceEEEEEeeCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcEE
Q psy4461 12 DLLLLSLLRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 12 ~~~iri~~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I~ 91 (95)
-+||||+||+|||++|+|+|++..+|++.+.+.|||.|||+|+|.++|+.|+.|++|||||.+|.+||...|++.+++|+
T Consensus 29 ~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g~~k~~~ik 108 (112)
T KOG1770|consen 29 YIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVGLVKKDNIK 108 (112)
T ss_pred eEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhcccccccee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCC
Q psy4461 92 VHGF 95 (95)
Q Consensus 92 vhg~ 95 (95)
||||
T Consensus 109 ihGf 112 (112)
T KOG1770|consen 109 IHGF 112 (112)
T ss_pred ecCC
Confidence 9998
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.96 E-value=5.6e-29 Score=167.18 Aligned_cols=77 Identities=32% Similarity=0.536 Sum_probs=71.4
Q ss_pred cCceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCc
Q psy4461 11 CDLLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQ 89 (95)
Q Consensus 11 ~~~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~ 89 (95)
.-++|++++|+++|.||+|+||+. .+|+++||++||++|||||||+++ +|+||||||++|.+||.++|| |+++
T Consensus 27 ~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~~-----~IeiQGdhr~~v~~~L~~~G~-k~k~ 100 (104)
T COG0023 27 QIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKDG-----EIEIQGDHRDKVKELLIKKGF-KVKN 100 (104)
T ss_pred CeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecCC-----EEEEeChHHHHHHHHHHHcCC-chhh
Confidence 345666678999999999999999 999999999999999999999997 999999999999999999999 9999
Q ss_pred EEEc
Q psy4461 90 LKVH 93 (95)
Q Consensus 90 I~vh 93 (95)
|.+|
T Consensus 101 i~~~ 104 (104)
T COG0023 101 IGIE 104 (104)
T ss_pred cccC
Confidence 9875
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation
Back Show alignment and domain information
Probab=99.96 E-value=1e-28 Score=157.96 Aligned_cols=75 Identities=47% Similarity=0.710 Sum_probs=71.0
Q ss_pred ceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcEE
Q psy4461 13 LLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQLK 91 (95)
Q Consensus 13 ~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I~ 91 (95)
++|++++|+|||.||+|+||+. ..|++++|+.||++|||||||++. +|+|||||+++|.+||.++|| ++++|+
T Consensus 2 V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~~-----~I~lQGD~r~~v~~~L~~~g~-~~~~i~ 75 (77)
T cd00474 2 VRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKDE-----VIELQGDQRKKIKEFLIKMGF-AKDNIK 75 (77)
T ss_pred EEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEecC-----EEEEeCcHHHHHHHHHHHcCC-CHHHeE
Confidence 5789999999999999999998 789999999999999999999984 999999999999999999999 559999
Q ss_pred Ec
Q psy4461 92 VH 93 (95)
Q Consensus 92 vh 93 (95)
||
T Consensus 76 i~ 77 (77)
T cd00474 76 IH 77 (77)
T ss_pred eC
Confidence 98
This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
>PRK00939 translation initiation factor Sui1; Reviewed
Back Show alignment and domain information
Probab=99.94 E-value=4.9e-27 Score=156.53 Aligned_cols=81 Identities=33% Similarity=0.568 Sum_probs=72.7
Q ss_pred ccccccc--------CceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHH
Q psy4461 5 LKYLYVC--------DLLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENI 75 (95)
Q Consensus 5 ~~~~~~~--------~~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v 75 (95)
|.++|+| .++|+.++|+|+|.||+|+||+. .+|+++||+.||++|||||||+++ +|+|||||+++|
T Consensus 10 ~~~~c~c~~~~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~~-----~I~iQGD~r~~v 84 (99)
T PRK00939 10 PKELCVCEEVAKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKDG-----RIELQGDHRERV 84 (99)
T ss_pred CHHHccCcccCccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEECC-----EEEEeCcHHHHH
Confidence 4566655 45778889999999999999997 999999999999999999999874 899999999999
Q ss_pred HHHHHHcCCCCCCcEE
Q psy4461 76 CQWLTKTGLAKPEQLK 91 (95)
Q Consensus 76 ~~~L~~~G~~p~~~I~ 91 (95)
++||.++|| |.++|+
T Consensus 85 ~~~L~~~G~-~~~~i~ 99 (99)
T PRK00939 85 KELLIKMGF-SEENIE 99 (99)
T ss_pred HHHHHHcCC-ChhhcC
Confidence 999999999 888874
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []
Back Show alignment and domain information
Probab=99.93 E-value=5.5e-26 Score=146.05 Aligned_cols=77 Identities=38% Similarity=0.585 Sum_probs=66.2
Q ss_pred cCceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCC
Q psy4461 11 CDLLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKP 87 (95)
Q Consensus 11 ~~~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~ 87 (95)
..++|++++|+|||.||+|.||+. ++|+++||++|+++|||||||.++++++.+|+|||||+++|.+||.++|++|+
T Consensus 5 ~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~~~k 82 (83)
T PF01253_consen 5 PKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGGIPK 82 (83)
T ss_dssp TCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCSSE-
T ss_pred CEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCCCCC
Confidence 467899999999999999999998 99999999999999999999999875578999999999999999999888665
SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic
Back Show alignment and domain information
Probab=99.91 E-value=4.2e-24 Score=142.72 Aligned_cols=72 Identities=31% Similarity=0.555 Sum_probs=64.3
Q ss_pred ceEEEEEe-eCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcE
Q psy4461 13 LLLLSLLR-NGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQL 90 (95)
Q Consensus 13 ~~iri~~R-~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I 90 (95)
++|++++| +|+|.||+|+||+. ..|++++|+.||++||||||++++ +|+|||||+++|.+||.++|| |..++
T Consensus 26 i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~~-----~IeiQGD~~~~v~~~L~~~G~-~~k~~ 99 (101)
T TIGR01158 26 VRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKDG-----VIEIQGDHRDRVKDLLEKKGF-KVKLI 99 (101)
T ss_pred EEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeCC-----EEEEeCcHHHHHHHHHHHcCC-Ceeec
Confidence 35566677 78999999999998 899999999999999999999875 999999999999999999999 65543
This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
>TIGR01159 DRP1 density-regulated protein DRP1
Back Show alignment and domain information
Probab=99.90 E-value=5.5e-24 Score=153.76 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=75.2
Q ss_pred cCceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH-cCCCCCC
Q psy4461 11 CDLLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK-TGLAKPE 88 (95)
Q Consensus 11 ~~~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~-~G~~p~~ 88 (95)
..++|++++|+|||.||+|+||+. ++|++++||.|+++||||+||.+++.++.+|+|||||+++|.+||.+ |.-+|++
T Consensus 89 ~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~~v~e~ 168 (173)
T TIGR01159 89 QKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPEVGDK 168 (173)
T ss_pred CeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcCCCCHH
Confidence 467888889999999999999999 99999999999999999999999887789999999999999999998 6445999
Q ss_pred cEEE
Q psy4461 89 QLKV 92 (95)
Q Consensus 89 ~I~v 92 (95)
+|+.
T Consensus 169 ~I~~ 172 (173)
T TIGR01159 169 DIKD 172 (173)
T ss_pred Heee
Confidence 9974
This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
>PRK06824 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.90 E-value=7.7e-24 Score=145.06 Aligned_cols=75 Identities=28% Similarity=0.414 Sum_probs=65.9
Q ss_pred ccccccc--------CceEEE--E-EeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh
Q psy4461 5 LKYLYVC--------DLLLLS--L-LRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR 72 (95)
Q Consensus 5 ~~~~~~~--------~~~iri--~-~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~ 72 (95)
|+++|+| +..|+| + +++++|.||+|+||+. ..|+++|||.||++|||||||+++ +|+||||||
T Consensus 25 ~~~~C~C~~~~~~~~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd~-----~IeiQGD~r 99 (118)
T PRK06824 25 PVAACICKQAAAPAGDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKDG-----VIEIQGDHV 99 (118)
T ss_pred chhhhccccccCCCcCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEecC-----EEEEcCcHH
Confidence 6677766 335555 3 3467899999999997 899999999999999999999985 999999999
Q ss_pred HHHHHHHHHcCC
Q psy4461 73 ENICQWLTKTGL 84 (95)
Q Consensus 73 ~~v~~~L~~~G~ 84 (95)
++|.+||.++||
T Consensus 100 ~~v~~~L~~~G~ 111 (118)
T PRK06824 100 ELLLAELLKRGF 111 (118)
T ss_pred HHHHHHHHHCCC
Confidence 999999999999
>PRK09019 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.90 E-value=2.4e-23 Score=140.75 Aligned_cols=69 Identities=30% Similarity=0.524 Sum_probs=63.8
Q ss_pred cCceEEEE-EeeCC--ceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy4461 11 CDLLLLSL-LRNGR--KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 11 ~~~~iri~-~R~gr--K~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
.+..||++ +|+|| |.||+|+||+. ..|+++|||.||++|||||||+++ +|+||||||++|.+||.++||
T Consensus 29 ~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~~-----~IelQGD~r~~v~~~L~~~Gf 101 (108)
T PRK09019 29 GDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKDG-----VIEIQGDKRDLLKSLLEAKGM 101 (108)
T ss_pred cCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEcC-----EEEEcCcHHHHHHHHHHHCCC
Confidence 57799998 66554 69999999997 899999999999999999999985 999999999999999999999
>PRK07451 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.89 E-value=3.7e-23 Score=141.14 Aligned_cols=71 Identities=31% Similarity=0.462 Sum_probs=64.9
Q ss_pred cccCceEEEE-EeeCC--ceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy4461 9 YVCDLLLLSL-LRNGR--KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 9 ~~~~~~iri~-~R~gr--K~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
-..+++|||+ +|+|| |.||+|+||+. ..|+++|||.||++||||||++++ +|+||||||++|.+||.++||
T Consensus 34 ~~~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd~-----~IelQGD~r~~v~~~L~~~Gf 108 (115)
T PRK07451 34 PPQQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKDN-----TIEIQGDHRQKILEILIKLGY 108 (115)
T ss_pred CccceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcCC-----EEEEcCcHHHHHHHHHHHCCC
Confidence 3468899998 56555 89999999998 799999999999999999999986 999999999999999999999
>KOG3239|consensus
Back Show alignment and domain information
Probab=99.71 E-value=3.2e-17 Score=118.90 Aligned_cols=80 Identities=25% Similarity=0.464 Sum_probs=71.5
Q ss_pred ceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH-cCCCCCCcE
Q psy4461 13 LLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK-TGLAKPEQL 90 (95)
Q Consensus 13 ~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~-~G~~p~~~I 90 (95)
.+|....|..||.||+|+||+. ++|++++||.|.++||||+||+.++...++|.||||..+.|.+|+.+ |.-+|++++
T Consensus 103 V~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~ev~ed~~ 182 (193)
T KOG3239|consen 103 VIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPEVPEDDV 182 (193)
T ss_pred eEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhcccCCcccc
Confidence 3444456999999999999999 99999999999999999999999998889999999999999999987 777798854
Q ss_pred EE
Q psy4461 91 KV 92 (95)
Q Consensus 91 ~v 92 (95)
.|
T Consensus 183 ~I 184 (193)
T KOG3239|consen 183 KI 184 (193)
T ss_pred ee
Confidence 43
>KOG2522|consensus
Back Show alignment and domain information
Probab=99.58 E-value=2.3e-15 Score=121.93 Aligned_cols=81 Identities=26% Similarity=0.417 Sum_probs=74.9
Q ss_pred ccCceEEEEEeeCCceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCC-ceEEEEcCchhHHHHHHHHH-cCCCC
Q psy4461 10 VCDLLLLSLLRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEY-GEVLQLQGDQRENICQWLTK-TGLAK 86 (95)
Q Consensus 10 ~~~~~iri~~R~grK~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~-~~~I~vQGD~~~~v~~~L~~-~G~~p 86 (95)
.+++.|..++|.|||.||+|+||+. ++|++.+|..|++.|+||+||.+.|+. +-+++|||+|.+.|+++|.+ +|+ |
T Consensus 466 ~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~ygi-p 544 (560)
T KOG2522|consen 466 LPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKSYGI-P 544 (560)
T ss_pred CCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHhhCC-C
Confidence 4677888899999999999999999 999999999999999999999998864 57999999999999999998 899 8
Q ss_pred CCcEE
Q psy4461 87 PEQLK 91 (95)
Q Consensus 87 ~~~I~ 91 (95)
+..|+
T Consensus 545 kK~I~ 549 (560)
T KOG2522|consen 545 KKWID 549 (560)
T ss_pred HHHHh
Confidence 88875
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms
Back Show alignment and domain information
Probab=98.54 E-value=4.8e-07 Score=58.80 Aligned_cols=61 Identities=20% Similarity=0.422 Sum_probs=49.2
Q ss_pred EeeCCceEEEEecCCCcccHHHHHHHHhhhccc------ceEEeecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy4461 19 LRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC------NGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 19 ~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~ac------ggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
++.|++.+|+|+.++. |+..|.++|++.|.= ...|.+. ...|+|+|||.+.|++||.+.||
T Consensus 21 k~~g~~~~T~IrkI~G--D~~aL~~dL~~~l~~~~~~~~~~~V~~~---~g~i~IkG~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 21 KNGGNRKITVIRKIEG--DIWALKKDLRKFLGEKPKKKIDVRVNEL---TGHIEIKGDHVEEVKKWLLEKGF 87 (87)
T ss_pred eCCCcEeEEEEEeecC--CHHHHHHHHHHHhhhhcCCCcceEEeec---CCEEEEcCccHHHHHHHHHHCcC
Confidence 3457899999999988 678888888887753 3445542 46999999999999999999997
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
>KOG4034|consensus
Back Show alignment and domain information
Probab=96.76 E-value=0.0023 Score=46.28 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=41.2
Q ss_pred eeCCceEEEEecCCCc-----ccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCC
Q psy4461 20 RNGRKTLTTVQGLSSE-----YDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGL 84 (95)
Q Consensus 20 R~grK~vT~I~Gl~~~-----~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~ 84 (95)
++|+|.+|+|+.++.+ .|+.+..+..-++-=| +-|.+. ...|.+-|||.+.|.+||.++||
T Consensus 104 ~~G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~Vnel---sgqI~~~g~~v~~vr~~L~eKGF 169 (169)
T KOG4034|consen 104 QRGNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNEL---SGQIVLKGNHVDTVREWLQEKGF 169 (169)
T ss_pred cCCcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhhh---cceEEEeCChHHHHHHHHHHccC
Confidence 4589999999999973 2333333333222222 223332 35899999999999999999997
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Back Show alignment and domain information
Probab=94.99 E-value=0.061 Score=37.75 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=41.8
Q ss_pred EeeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH
Q psy4461 19 LRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77 (95)
Q Consensus 19 ~R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~ 77 (95)
.+-|+| |+|.||.+ .=+++.+++.|.+.+|+.|++ ++ ....|+|.+..+..+
T Consensus 36 ~~eG~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~~----~~lii~G~~~~~~i~ 92 (138)
T PRK03988 36 RIEGNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-EG----GRLILQGKFSPRVIN 92 (138)
T ss_pred EEEcCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-cC----CEEEEEEeeCHHHHH
Confidence 356655 99999976 345999999999999999999 32 599999998775544
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative
Back Show alignment and domain information
Probab=94.92 E-value=0.063 Score=37.45 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=41.4
Q ss_pred eeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH
Q psy4461 20 RNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77 (95)
Q Consensus 20 R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~ 77 (95)
+-|+| |+|.||.+ .=+++.+.|.|.+.+|+.|++.+ ....|+|.+.....+
T Consensus 32 ~eG~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~~-----~rlii~G~~~~~~i~ 87 (133)
T TIGR00311 32 IEGNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLEG-----GRLILQGKFTHFLLN 87 (133)
T ss_pred EEcCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceecC-----CEEEEEeecCHHHHH
Confidence 45655 99999976 34599999999999999999953 489999998875554
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5
Back Show alignment and domain information
Probab=94.22 E-value=0.14 Score=34.57 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=44.6
Q ss_pred EeeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH-HHHH
Q psy4461 19 LRNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ-WLTK 81 (95)
Q Consensus 19 ~R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~-~L~~ 81 (95)
.+-|+| -|+|.||.+ .=+++.+.|.|.+.+|+.|++.+. ....|+|.+..+-.+ .|.+
T Consensus 12 ~~eG~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~~----~rlii~G~~~~~~i~~~l~~ 75 (110)
T smart00653 12 LREGKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGK----GRLIVNGRFTPKKLQDLLRR 75 (110)
T ss_pred EEEcCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECCC----CeEEEEEeeCHHHHHHHHHH
Confidence 345555 789999976 345999999999999999999763 489999998775444 4433
>PRK14434 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=93.80 E-value=0.49 Score=30.75 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=41.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcc-cceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFA-CNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~a-cggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|.|.-.++-+-.....+.++++ =.|.|...+.+.-+|.+||+..+.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~ 61 (92)
T PRK14434 7 IVSGRVQGVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQE 61 (92)
T ss_pred EEEEeecceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHH
Confidence 45676666667777888889999 9999998877668999999865555555544
>PRK14451 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=93.62 E-value=0.48 Score=30.55 Aligned_cols=52 Identities=8% Similarity=0.084 Sum_probs=41.4
Q ss_pred EecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 29 VQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 29 I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
|+|.-.++-+-..++.+..+++-.|.|...+.+.-+|.+||+- +.|.+|+..
T Consensus 9 V~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (89)
T PRK14451 9 ISGRVQGVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKE-DKLEEFYTW 60 (89)
T ss_pred EEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 6777667778888999999999999999987777899999985 335554443
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Back Show alignment and domain information
Probab=93.06 E-value=0.24 Score=36.44 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=42.3
Q ss_pred eeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH-HHHH
Q psy4461 20 RNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ-WLTK 81 (95)
Q Consensus 20 R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~-~L~~ 81 (95)
+-|+| |+|.||.+ .=+++.+.+.|...+++.|++.+ ....|+|.+...-.+ .|.+
T Consensus 33 ~eG~k--T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~~-----~~~ii~G~~~~~~i~~~l~~ 93 (201)
T PRK12336 33 IEGKT--TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIEG-----GRAVFNGKFTEEDIQAAIDA 93 (201)
T ss_pred EEcCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceecC-----CEEEEEeeeCHHHHHHHHHH
Confidence 45543 99999976 34599999999999999999964 388999998765444 4433
>PRK14443 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=92.41 E-value=0.86 Score=29.81 Aligned_cols=53 Identities=9% Similarity=0.228 Sum_probs=40.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..++.+..+++=.|.|...+.+.-+|.+||+-.. |.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~ 61 (93)
T PRK14443 9 RVTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEEN-LNKFIDA 61 (93)
T ss_pred EEEEeeCCccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHH-HHHHHHH
Confidence 4566666666777888888999999999998777789999998433 4444443
>PRK14444 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=92.13 E-value=1.3 Score=28.73 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=41.4
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-+|+|.-.++-+-..+..+.+.++=+|.|+..+.+.-+|.+||+- ++|.+|+..
T Consensus 8 i~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (92)
T PRK14444 8 VFISGRVQGVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISW 61 (92)
T ss_pred EEEEEeeCCcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 356777666777788888889999999999887666799999994 335555554
>PRK14439 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=91.60 E-value=1.2 Score=32.35 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=44.2
Q ss_pred EEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcC
Q psy4461 26 LTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTG 83 (95)
Q Consensus 26 vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G 83 (95)
--.|+|.-.++-+-..++.+..+++=.|.|...+.+.-+|++||+. .+...++|.+.|
T Consensus 78 ~i~VsGrVQGVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 78 IAWVYGRVQGVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred EEEEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 3456787777778888999999999999999987777899999986 344444444434
>PRK14446 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=91.47 E-value=1 Score=29.07 Aligned_cols=53 Identities=9% Similarity=0.025 Sum_probs=41.3
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-.....+.++++=.|.|...+.+.-+|++||+-. .|.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~ 59 (88)
T PRK14446 7 VVSGVVQGVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAW 59 (88)
T ss_pred EEEEecCCeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 456766666677888899999999999999887779999999853 45555443
>PRK14420 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=91.43 E-value=1.5 Score=28.10 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=39.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..+..+..+++=.|.|...+.+.-+|++||+- +.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 59 (91)
T PRK14420 7 IVDGRVQGVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDA 59 (91)
T ss_pred EEEEeeCCcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHH
Confidence 45665555556667778888888999999887666899999984 666666655
>PRK14425 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=91.20 E-value=1.1 Score=29.12 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=41.6
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh--HHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR--ENICQWLT 80 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~--~~v~~~L~ 80 (95)
-.|+|.-.++-+-...+.+..+++=.|.|+..+.+.-+|.+||+.. +...++|.
T Consensus 10 ~~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 10 VRITGRVQGVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred EEEEEeEecccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 3456766666677888888899999999999877778999999754 55555555
>PRK14450 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=91.11 E-value=1.7 Score=27.95 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=42.3
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCc-eEEEEcCc--hhHHHHHHHHHcC
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYG-EVLQLQGD--QRENICQWLTKTG 83 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~-~~I~vQGD--~~~~v~~~L~~~G 83 (95)
+|.|.-.++-+-..+..+..+++=.|.|...+.+. -+|.+||+ ..+...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~g 64 (91)
T PRK14450 7 IVKGKVQGVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-SG 64 (91)
T ss_pred EEEEEecCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-hC
Confidence 46666666667788888889999999999877664 79999999 5566666665 44
>PRK14426 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=91.06 E-value=1.8 Score=27.94 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=40.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-.....+.++++=.|.|...+.+.-+|++||+.. +|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 61 (92)
T PRK14426 9 WVYGRVQGVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEE-QVEKLMEW 61 (92)
T ss_pred EEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHH-HHHHHHHH
Confidence 456666666677788888899999999999877778999999953 35555543
>PRK14422 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.65 E-value=2.3 Score=27.58 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=41.4
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|+|.-.++-+-.+.+.+..+++=+|.|...+.+.-+|.+||+... |.+|+..
T Consensus 10 ~~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~ 63 (93)
T PRK14422 10 AWVHGHVQGVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQL 63 (93)
T ss_pred EEEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHH
Confidence 34567666677788888999999999999998777789999998643 4444443
>PRK14432 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.52 E-value=2.2 Score=27.72 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=40.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEc-CchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQ-GDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQ-GD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-..++.+.+.++=.|.|...+.+.-+|.+| ||. +.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~ 60 (93)
T PRK14432 7 FISGKVQGVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKL 60 (93)
T ss_pred EEEEeecCeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHH
Confidence 46666666667777888888899999999987777899998 985 455555543
>PRK14442 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.43 E-value=2.1 Score=27.64 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=41.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..+..+.+.++=.|.|...+.+.-+|.+||+.. .|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~ 61 (91)
T PRK14442 9 YVGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERW 61 (91)
T ss_pred EEEEecCCccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHH
Confidence 457776666777888888899999999999877778999999865 35554443
>PRK14433 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.36 E-value=1.8 Score=27.69 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=41.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-..+..+..+++=+|.|...+.+.-+|.+|||-. .|.+|+..
T Consensus 6 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 58 (87)
T PRK14433 6 LVSGRVQGVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHW 58 (87)
T ss_pred EEEEeeeCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHH
Confidence 456655566677788888899999999999877668999999964 56666654
>PRK14449 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.17 E-value=2.5 Score=27.14 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=41.9
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-+|+|.-.++-+-.....+...++=.|.|...+.+.-+|.+||+. +.|.+|+..
T Consensus 7 i~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14449 7 LRITGHVQGVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINF 60 (90)
T ss_pred EEEEEeecCcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHH
Confidence 345676566777888888889999999999887777899999986 336666654
>PRK14428 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.12 E-value=2.4 Score=27.88 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=42.2
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|+|.-.++-+--.+..+.++++=.|.|...+.+.-+|++||+. +.|.+|+..
T Consensus 12 i~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~ 65 (97)
T PRK14428 12 IVVTGLVQGVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQ 65 (97)
T ss_pred EEEEEecCCccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHH
Confidence 356777666777888889999999999999987777899999985 445555544
>PRK14435 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.04 E-value=2.1 Score=27.53 Aligned_cols=53 Identities=17% Similarity=0.391 Sum_probs=40.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-.....+..+++=.|.|...+.+.-+|.+||+- ++|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~ 59 (90)
T PRK14435 7 RVEGIVQGVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNE 59 (90)
T ss_pred EEEEEeCCcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 45666666667777888888899999999987777899999986 335555543
>PRK14438 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.03 E-value=2.2 Score=27.52 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=41.4
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|+|.-.++-+-..+..+..+++=.|.|...+.+.-+|.+||+- ++|.+|+..
T Consensus 7 i~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (91)
T PRK14438 7 VTVKGLVQGVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDW 60 (91)
T ss_pred EEEEEecCCcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHH
Confidence 356776666667788888999999999999987776799999985 345555544
>PRK14437 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.99 E-value=2 Score=28.83 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=42.5
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh--HHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR--ENICQWLT 80 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~--~~v~~~L~ 80 (95)
-.|+|.-.++-+-.....+.++++=.|.|...+.+.-+|.+||+.. +...++|.
T Consensus 27 i~V~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 27 ATVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred EEEEEecCCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 3467877777788889999999999999999877778999999865 34444444
>PRK14429 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.95 E-value=2.3 Score=27.30 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=40.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh--HHHHHHHHHcC
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR--ENICQWLTKTG 83 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~--~~v~~~L~~~G 83 (95)
.|.|.-.++-+-.....+...++=+|.|...+.+.-+|.+||+-. +...++|. .|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~-~g 63 (90)
T PRK14429 7 KLTGKVQGVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCE-VG 63 (90)
T ss_pred EEEEeecCeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh-hC
Confidence 456665566677788888899999999998877778999999864 44444444 35
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []
Back Show alignment and domain information
Probab=89.82 E-value=0.54 Score=32.39 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=43.8
Q ss_pred eeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhH-HHHHHHHH
Q psy4461 20 RNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRE-NICQWLTK 81 (95)
Q Consensus 20 R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~-~v~~~L~~ 81 (95)
+-|+ .-|+|.||.+ .=+++.+++.|.+.+|+.|++.+. ....|+|.|.. +|.++|.+
T Consensus 26 ~eG~-~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~----~~lii~G~~~~~~i~~~L~~ 88 (125)
T PF01873_consen 26 IEGK-KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGK----GRLIINGRFSSKQIQDLLDK 88 (125)
T ss_dssp EETS-TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETT----TEEEEESSSSCCHHHHHHHH
T ss_pred EEcc-ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCC----CEEEEEEecCHHHHHHHHHH
Confidence 4454 5688889876 346999999999999999999873 48999999766 44445544
Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
>PRK14421 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.80 E-value=2.4 Score=27.97 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=39.7
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 80 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~ 80 (95)
+|+|.-.++-+-..+..+.++++=.|.|...+.+.-+|.+||+-.. |.+|+.
T Consensus 9 ~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~~ 60 (99)
T PRK14421 9 TIRGRVQGVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMIA 60 (99)
T ss_pred EEEEeEcCccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHHH
Confidence 4566666666778888888999999999988777789999998643 444443
>PRK14427 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.52 E-value=2.4 Score=27.53 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=41.4
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|.|.-.++-+-.+.+.+.+.++=.|.|...+.+.-+|.+||+.. .|.+|+..
T Consensus 10 i~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~i~~f~~~ 63 (94)
T PRK14427 10 ARVFGVVQGVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGE-QVEKLLDW 63 (94)
T ss_pred EEEEEEeCCcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 3456766666677888888999999999998877778999999874 35555544
>PRK14445 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.42 E-value=2.3 Score=27.38 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=40.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-..+..+.+.++=.|.|...+.+.-+|.+||+-.. |.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~ 61 (91)
T PRK14445 9 IVSGLVQGVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQ 61 (91)
T ss_pred EEEEEEcCcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHH
Confidence 4567666666777888888999999999988777689999998633 5554443
>PRK14430 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.09 E-value=3 Score=27.00 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=39.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchh--HHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR--ENICQWL 79 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~--~~v~~~L 79 (95)
+|.|.-.++-+-..+..+..+++=.|.|...+.+.-+|.+||+-. +.+.++|
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 9 VAHGRVQGVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred EEEEeecceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 456655555667778888888999999998877778999999843 4555555
>PRK14423 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.72 E-value=3.1 Score=26.83 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=40.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-..++.+.++++=.|.|...+.+.-+|.+||+.. .|.+|+..
T Consensus 10 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 62 (92)
T PRK14423 10 FVSGRVQGVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEW 62 (92)
T ss_pred EEEEecCCeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 456766666778888899999999999998876667999999864 45555544
>PRK14436 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.55 E-value=3.8 Score=26.44 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=40.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..+..+..+++=.|.|...+.+.-+|.+||+- ++|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (91)
T PRK14436 9 RIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGW 61 (91)
T ss_pred EEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 45666666667788888889999999999887777899999986 336666554
>PRK14440 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.31 E-value=3.6 Score=26.48 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=39.1
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-.....+.++++=.|.|...+.+.-+|.+||+- +.|.+|+..
T Consensus 8 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14440 8 RVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLER 60 (90)
T ss_pred EEEEeEeccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHH
Confidence 45565555556677788888888999999877667899999986 556555544
>PRK14447 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.09 E-value=3.7 Score=26.66 Aligned_cols=53 Identities=11% Similarity=0.143 Sum_probs=40.9
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCC-ceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEY-GEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~-~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-.+++.+.++++=.|.|...+.+ .-+|.+||+ .+.|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~ 62 (95)
T PRK14447 9 FIRGKVQGVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEW 62 (95)
T ss_pred EEEEecCCccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHH
Confidence 4577776777788889999999999999988766 479999998 4555555543
>PRK14452 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.71 E-value=4.9 Score=26.89 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=41.8
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L 79 (95)
-.|+|.-.++-+-..+..+.++++=+|.|...+.+.-+|.+||+.. .|.+|+
T Consensus 24 i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~ 75 (107)
T PRK14452 24 FLIEGRVQGVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELR 75 (107)
T ss_pred EEEEEeecCcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 4567877777788888899999999999999877778999999964 566653
>PRK14441 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.61 E-value=4.1 Score=26.32 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=40.0
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 80 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~ 80 (95)
-.|+|.-.++-+-..+..+.++++=.|.|...+.+.-+|.+||+-. .|.+|+.
T Consensus 9 i~v~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~~ 61 (93)
T PRK14441 9 IVVSGRVQGVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALVR 61 (93)
T ss_pred EEEEEecCCccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHHH
Confidence 3456766666677788888899999999998877778999999843 4444443
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3
Back Show alignment and domain information
Probab=87.47 E-value=4.4 Score=25.60 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=39.3
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
+|+|.-.++-+-..++.+...++=.|.|...+.+.-+|.+||+- +.|.+|+..
T Consensus 9 ~v~G~VQGVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~ 61 (91)
T PF00708_consen 9 IVSGRVQGVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKW 61 (91)
T ss_dssp EEEEETSSSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHH
T ss_pred EEEEEECcCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHH
Confidence 56776667778888999999999999999987777899999974 335555443
6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
>PRK14431 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.07 E-value=4.6 Score=25.99 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=40.2
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcCC
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGL 84 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G~ 84 (95)
.|.|.-.++-+-..++.+.++++=.|.|...+. +-+|++||+. .++..++|.+ |-
T Consensus 7 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~-g~ 63 (89)
T PRK14431 7 QVFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE-GA 63 (89)
T ss_pred EEEEecCCeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc-CC
Confidence 456766666667778888899999999998866 5999999975 4444445544 44
>PRK14448 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.74 E-value=5.6 Score=25.55 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=40.8
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-.|+|.-.++-+-...+.+...++=.|.|...+.+.-+|.+||+-. +|.+|+..
T Consensus 6 ~~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~v~~f~~~ 59 (90)
T PRK14448 6 FIVYGHVQGVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDA-QIAAFRDW 59 (90)
T ss_pred EEEEEeecCcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 3566766666777888888889999999999877778999999863 35444443
>PRK14424 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.06 E-value=6.1 Score=25.74 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=40.5
Q ss_pred EEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHH
Q psy4461 26 LTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT 80 (95)
Q Consensus 26 vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~ 80 (95)
--+|+|--.++-+-.....+..+++=.|.|...+.+.-+|.+||+-.. |.+|+.
T Consensus 10 ~~~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-v~~f~~ 63 (94)
T PRK14424 10 YVRVRGVVQGVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQ-IDRMLA 63 (94)
T ss_pred EEEEEEeecCCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHH-HHHHHH
Confidence 345667666667777888888899999999987766689999998643 444443
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 95
d2if1a_ 126
d.64.1.1 (A:) Eukaryotic translation initiation fa
1e-37 d1d1ra_ 83
d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
6e-17 d1xr4a1 236
c.124.1.2 (A:1-236) Putative citrate lyase alpha c
4e-04
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]} Length = 126
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (303), Expect = 1e-37
Identities = 59/76 (77%), Positives = 70/76 (92%)
Query: 20 RNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWL 79
RNGRKTLTTVQG++ +YD KK+V+A KK+FACNGTVIEHPEYGEV+QLQGDQR+NICQ+L
Sbjct: 51 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 110
Query: 80 TKTGLAKPEQLKVHGF 95
+ GLAK +QLKVHGF
Sbjct: 111 VEIGLAKDDQLKVHGF 126
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} Length = 83
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]
Score = 66.9 bits (164), Expect = 6e-17
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 20 RNGR--KTLTTVQGLS-SEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENIC 76
+GR K + + G+ + +L K+ KK+ C G V + V+++QGD+R+ +
Sbjct: 12 TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLK 66
Query: 77 QWLTKTG 83
L G
Sbjct: 67 SLLEAKG 73
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Length = 236
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative citrate lyase alpha chain, citF2
species: Salmonella typhimurium [TaxId: 90371]
Score = 35.1 bits (81), Expect = 4e-04
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 19 LRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ-RENICQ 77
R G K + V +E + + A + +IEH + G V Q+ R + +
Sbjct: 67 FRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLGE 126
Query: 78 WLTKTGLAKPEQLKVHG 94
++ + P Q+ HG
Sbjct: 127 EISAGLMENPVQIHSHG 143
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 95
d2if1a_ 126
Eukaryotic translation initiation factor eIF-1 (SU
99.97 d1d1ra_ 83
YciH {Escherichia coli [TaxId: 562]}
99.89 d1urra_ 97
Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila
95.22 d1neea1 98
Translation initiation factor 2 beta, aIF2beta, N-
94.74 d1w2ia_ 90
Acylphosphatase {Pyrococcus horikoshii [TaxId: 539
93.96 d1ulra_ 87
Acylphosphatase {Thermus thermophilus [TaxId: 274]
92.96 d1k8ba_ 52
Translation initiation factor 2 beta, aIF2beta, N-
91.56 d2acya_ 98
Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
91.45 d1apsa_ 98
Acylphosphatase {Horse (Equus caballus) [TaxId: 97
91.06 d1gxua_ 88
Hydrogenase maturation protein HypF N-terminal dom
83.54
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.6e-32 Score=184.34 Aligned_cols=85 Identities=69% Similarity=1.083 Sum_probs=80.6
Q ss_pred cCceEEEEEeeCCceEEEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcE
Q psy4461 11 CDLLLLSLLRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQL 90 (95)
Q Consensus 11 ~~~~iri~~R~grK~vT~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I 90 (95)
..++|++++|+|||.||+|+||+.++|+++||++||++|||||||+++++++.+|+||||||++|.+||.++|++++++|
T Consensus 42 ~~I~I~~ekR~G~K~VT~I~Gl~~~~dlk~laK~lKk~~acggSVk~~~~~~~~I~IQGD~r~~v~~~L~~~g~~~k~~I 121 (126)
T d2if1a_ 42 DYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQL 121 (126)
T ss_dssp TCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHHTSSCTTTE
T ss_pred ceEEEEEEecCCCCCeEEEECCCCcccHHHHHHHHHHhcCCCceEEeCCCCCcEEEEcccHHHHHHHHHHHcCCCccccE
Confidence 35688889999999999999998789999999999999999999999888889999999999999999999999999999
Q ss_pred EEcCC
Q psy4461 91 KVHGF 95 (95)
Q Consensus 91 ~vhg~ 95 (95)
+||||
T Consensus 122 ~vHg~ 126 (126)
T d2if1a_ 122 KVHGF 126 (126)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99998
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=3.4e-24 Score=136.40 Aligned_cols=70 Identities=27% Similarity=0.485 Sum_probs=63.1
Q ss_pred cCceEEEE-EeeCC--ceEEEEecCCC-cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCC
Q psy4461 11 CDLLLLSL-LRNGR--KTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLA 85 (95)
Q Consensus 11 ~~~~iri~-~R~gr--K~vT~I~Gl~~-~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~ 85 (95)
.+..||++ +|+|| |.||+|+||+. .+|+++||++||++||||||++++ +|+|||||+++|.+||.++||.
T Consensus 2 g~~~Vri~~e~kgR~GK~VT~I~Gl~~~~~dlk~l~k~lKk~~gcGgsvk~~-----~I~lQGd~~~~v~~~L~~~G~~ 75 (83)
T d1d1ra_ 2 GDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDG-----VIEIQGDKRDLLKSLLEAKGMK 75 (83)
T ss_dssp CCCEEEEEECCCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCSS-----CEEECSCCHHHHHHHHHHHTCE
T ss_pred CCeEEEEEEEcCCCCCCeEEEEECCcCCHHHHHHHHHHHHHHhcCCEEEECC-----EEEEeCcHHHHHHHHHHHcCCc
Confidence 46678888 45554 99999999997 899999999999999999999875 8999999999999999999993
>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase 2 (Cg18505)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.22 E-value=0.088 Score=31.60 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=45.6
Q ss_pred EecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCch--hHHHHHHHHHcCCCCCCc
Q psy4461 29 VQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQ--RENICQWLTKTGLAKPEQ 89 (95)
Q Consensus 29 I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~--~~~v~~~L~~~G~~p~~~ 89 (95)
|.|.-.++-+-..++.+.++++..|.|...+.+.-+|.+||+. .++..++|.+.|- |...
T Consensus 12 V~G~VQGVGFR~~~~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~~p-~~a~ 73 (97)
T d1urra_ 12 IFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRI-PNAK 73 (97)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCCS-TTCE
T ss_pred EEEEecCcCChHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCCC-CCcE
Confidence 6777677778889999999999999999987777899999984 3345556655443 4443
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
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class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.74 E-value=0.0057 Score=38.00 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=40.4
Q ss_pred eeCCceEEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHH
Q psy4461 20 RNGRKTLTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQ 77 (95)
Q Consensus 20 R~grK~vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~ 77 (95)
+-|+| |++.||.+ .=+++.+.|.|.+.+|+.|++.. ....|+|.+..+..+
T Consensus 34 ~eGkk--Tii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~~-----~~lii~G~~~~~~i~ 89 (98)
T d1neea1 34 IQGNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEG-----GRAILQGKFTHFLIN 89 (98)
T ss_dssp EETTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCBT-----TTEEEESSCSSSHHH
T ss_pred Eecce--EEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEeC-----CEEEEEeeeCHHHHH
Confidence 34655 88999976 35699999999999999999953 268899998775544
>d1w2ia_ d.58.10.1 (A:) Acylphosphatase {Pyrococcus horikoshii [TaxId: 53953]}
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class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.96 E-value=0.16 Score=30.36 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=42.8
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
.|+|.-.++-+-..++.+..+++-.|.|...+.+.-+|.+||+ .+.|.+|+..
T Consensus 8 ~V~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~ 60 (90)
T d1w2ia_ 8 KIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGD-EERVEALIGW 60 (90)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHH
T ss_pred EEEEeEeCcCChHHHHHHHHHcCCeEEEEECCCCCEEEEEECC-HHHHHHHHHH
Confidence 3556555677888888999999999999998777789999998 5777777765
>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Thermus thermophilus [TaxId: 274]
Probab=92.96 E-value=0.36 Score=28.52 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=42.0
Q ss_pred EEEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 27 TTVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 27 T~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
-+|+|.-.++-+-..++.+...++=+|.|...+.+.-+|.+|||. +.|.+|+..
T Consensus 5 ~iV~G~VQGVGFR~~~~~~A~~~~l~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 58 (87)
T d1ulra_ 5 ALVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPK-EALELFLHH 58 (87)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCH-HHHHHHHHH
T ss_pred EEEEEEEeCccCHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 357776667777888889999999999999987777899999983 555555543
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.56 E-value=0.056 Score=29.80 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=32.3
Q ss_pred EEEEecCCC-----cccHHHHHHHHhhhcccceEEeecCCCceEEEEcC
Q psy4461 26 LTTVQGLSS-----EYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQG 69 (95)
Q Consensus 26 vT~I~Gl~~-----~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQG 69 (95)
-|++.||.+ .=|++.++|.|.+.++.+|++.. ....|+|
T Consensus 8 kTvi~Nf~eI~~~L~R~p~hv~kfl~~ELgt~g~~~~-----~rlii~G 51 (52)
T d1k8ba_ 8 RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEG-----GRLILQR 51 (52)
T ss_dssp EEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEET-----TEEEEEC
T ss_pred eEeeecHHHHHHHhCCCHHHHHHHHHHHhCCceeeeC-----CEEEEeC
Confidence 588999976 34699999999999999999953 3677777
>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.45 E-value=0.57 Score=27.93 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=45.0
Q ss_pred EecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHH---HcCCCCCCcE
Q psy4461 29 VQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLT---KTGLAKPEQL 90 (95)
Q Consensus 29 I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~---~~G~~p~~~I 90 (95)
|.|--.++-+-..++.+...++=.|.|...+.+.-+|.+||+ .+.|.+|+. ..|- |...|
T Consensus 13 V~G~VQGVGFR~~v~~~A~~l~L~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~l~~~gp-~~a~V 75 (98)
T d2acya_ 13 IFGKVQGVFFRKYTQAEGKKLGLVGWVQNTDQGTVQGQLQGP-ASKVRHMQEWLETKGS-PKSHI 75 (98)
T ss_dssp EEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHHHHHTCS-TTCEE
T ss_pred EEEEEcCcCchHHHHHHHHHcCCEEEEEECCCCeEEEEEEEC-HHHHHHHHHHHHhcCC-CCcEE
Confidence 667666677888899999999999999998777789999998 445555544 4565 54443
>d1apsa_ d.58.10.1 (A:) Acylphosphatase {Horse (Equus caballus) [TaxId: 9796]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.06 E-value=0.08 Score=31.86 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=42.1
Q ss_pred EecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHH
Q psy4461 29 VQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTK 81 (95)
Q Consensus 29 I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~ 81 (95)
|.|--.++-+-..++.+...++-.|.|...+.+.-+|.+||+ .+.|.+|+..
T Consensus 13 V~G~VQGVGFR~~~~~~A~~~~l~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~ 64 (98)
T d1apsa_ 13 VFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGP-EEKVNSMKSW 64 (98)
T ss_dssp EECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEE-HHHHHHHHHS
T ss_pred EEEeEcCcCcHHHHHHHHHHcCCeEEEEECCCCCEEEEEEcC-HHHHHHHHHH
Confidence 677666666777888888999999999998777789999997 4667777664
>d1gxua_ d.58.10.1 (A:) Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP) {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP)
species: Escherichia coli [TaxId: 562]
Probab=83.54 E-value=2.7 Score=24.35 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=42.5
Q ss_pred EEecCCCcccHHHHHHHHhhhcccceEEeecCCCceEEEEcCchhHHHHHHHHHcCCCCCCcE
Q psy4461 28 TVQGLSSEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKTGLAKPEQL 90 (95)
Q Consensus 28 ~I~Gl~~~~dl~~lak~lkk~~acggsv~~~~~~~~~I~vQGD~~~~v~~~L~~~G~~p~~~I 90 (95)
.|.|.-.++=+-..++.+..+++=.|.|...+.+ .++.+||+-.. ..+.|.+.|- |...|
T Consensus 9 ~V~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG-v~~~~~~~~~~-fi~~l~~~gp-~~a~V 68 (88)
T d1gxua_ 9 RIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDPEV-FLVQLYQHCP-PLARI 68 (88)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCCHH-HHHHHHHTCC-TTCEE
T ss_pred EEEEEEeCccCHHHHHHHHHHcCCeEEEEECCCC-cEEEEEcCHHH-HHHHHHHcCC-CCcEE
Confidence 4566555556677888888899999999987655 88999998654 4455666664 44433
