Psyllid ID: psy4488

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
VAFQCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERARQLKARERFARSASSGFGSEGSAMRRQREDIQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSDK
cHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHccccccccEEccHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccc
cHHHHHHHHHHHHHHHHcEEEccccEccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccc
VAFQCKENIFLIQTLRdfqyteegkdqgfNVREKAKALATLLGDEERLRNERARQLKARERFARsassgfgsegsamrRQREDIQEGVAGLRRNIKNLAHNYSDAQVKVReatsndpwgpssslMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSDK
vafqckenifliqtlrdfqyteegkdqgfnvREKAKALatllgdeerlrNERARQLKArerfarsassgfgsegsamrrqREDIQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIktgsdkvtriGGIFthliktrsdk
VAFQCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERARQLKARErfarsassgfgsegsaMRRQREDIQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSDK
***QCKENIFLIQTLRDFQYTEE******************************************************************************************************SEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIK*****
VAFQCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERA********************GSAMRRQREDIQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRS**
VAFQCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERARQLKA***********************EDIQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSDK
VAFQCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERARQLKARERFARS*********************GVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRS**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VAFQCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERARQLKARERFARSASSGFGSEGSAMRRQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query194 2.2.26 [Sep-21-2011]
Q80VP1 575 Epsin-1 OS=Mus musculus G yes N/A 0.453 0.153 0.808 7e-42
Q9Y6I3 576 Epsin-1 OS=Homo sapiens G yes N/A 0.453 0.152 0.808 8e-42
O88339 575 Epsin-1 OS=Rattus norvegi yes N/A 0.453 0.153 0.808 1e-41
Q8CHU3 595 Epsin-2 OS=Mus musculus G no N/A 0.463 0.151 0.75 3e-40
Q9H201 632 Epsin-3 OS=Homo sapiens G no N/A 0.443 0.136 0.764 1e-39
Q4V882 608 Epsin-3 OS=Rattus norvegi no N/A 0.448 0.143 0.752 2e-39
Q91W69 636 Epsin-3 OS=Mus musculus G no N/A 0.448 0.136 0.752 2e-39
O95208 641 Epsin-2 OS=Homo sapiens G no N/A 0.458 0.138 0.758 2e-38
Q9Z1Z3 583 Epsin-2 OS=Rattus norvegi no N/A 0.458 0.152 0.736 8e-37
Q8IYW4 607 ENTH domain-containing pr no N/A 0.458 0.146 0.666 7e-33
>sp|Q80VP1|EPN1_MOUSE Epsin-1 OS=Mus musculus GN=Epn1 PE=1 SV=3 Back     alignment and function desciption
 Score =  170 bits (430), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 72/89 (80%), Positives = 86/89 (96%)

Query: 91  LRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLN 150
           LRR +KN+ HNYS+A++KVREATSNDPWGPSSSLMSEIADLTYNVVAF+EIM+MIWKRLN
Sbjct: 6   LRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLN 65

Query: 151 DSGKNWRHVYKALSLLEYLIKTGSDKVTR 179
           D GKNWRHVYKA++L+EYLIKTGS++V++
Sbjct: 66  DHGKNWRHVYKAMTLMEYLIKTGSERVSQ 94
Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). Modifies membrane curvature and facilitates the formation of clathrin-coated invaginations (By similarity). Regulates receptor-mediated endocytosis.
Mus musculus (taxid: 10090)
>sp|Q9Y6I3|EPN1_HUMAN Epsin-1 OS=Homo sapiens GN=EPN1 PE=1 SV=2 Back     alignment and function description
>sp|O88339|EPN1_RAT Epsin-1 OS=Rattus norvegicus GN=Epn1 PE=1 SV=1 Back     alignment and function description
>sp|Q8CHU3|EPN2_MOUSE Epsin-2 OS=Mus musculus GN=Epn2 PE=1 SV=1 Back     alignment and function description
>sp|Q9H201|EPN3_HUMAN Epsin-3 OS=Homo sapiens GN=EPN3 PE=2 SV=1 Back     alignment and function description
>sp|Q4V882|EPN3_RAT Epsin-3 OS=Rattus norvegicus GN=Epn3 PE=1 SV=1 Back     alignment and function description
>sp|Q91W69|EPN3_MOUSE Epsin-3 OS=Mus musculus GN=Epn3 PE=2 SV=1 Back     alignment and function description
>sp|O95208|EPN2_HUMAN Epsin-2 OS=Homo sapiens GN=EPN2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Z1Z3|EPN2_RAT Epsin-2 OS=Rattus norvegicus GN=Epn2 PE=1 SV=1 Back     alignment and function description
>sp|Q8IYW4|ENTD1_HUMAN ENTH domain-containing protein 1 OS=Homo sapiens GN=ENTHD1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
189181851 426 GH27715p [Drosophila melanogaster] 0.525 0.239 0.834 2e-46
45551527 831 liquid facets, isoform A [Drosophila mel 0.525 0.122 0.834 6e-46
442630805 791 liquid facets, isoform J [Drosophila mel 0.525 0.128 0.834 2e-45
442630803 637 liquid facets, isoform I [Drosophila mel 0.525 0.160 0.834 6e-45
357625792279 hypothetical protein KGM_12778 [Danaus p 0.479 0.333 0.882 4e-44
189240526 520 PREDICTED: similar to liquid facets [Tri 0.515 0.192 0.801 7e-44
328722140 502 PREDICTED: epsin-2-like isoform 1 [Acyrt 0.515 0.199 0.801 3e-43
328722138 492 PREDICTED: epsin-2-like isoform 2 [Acyrt 0.515 0.203 0.801 4e-43
157120636 600 liquid facets [Aedes aegypti] gi|1088748 0.510 0.165 0.82 7e-43
195125691 807 GI12871 [Drosophila mojavensis] gi|19391 0.489 0.117 0.843 1e-42
>gi|189181851|gb|ACD81702.1| GH27715p [Drosophila melanogaster] Back     alignment and taxonomy information
 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/103 (83%), Positives = 97/103 (94%)

Query: 77  MRRQREDIQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVV 136
           MR+Q++D+Q  VAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPS+++MSEIA+LTYNVV
Sbjct: 1   MRKQKDDMQVNVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSAAIMSEIAELTYNVV 60

Query: 137 AFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTR 179
           AF+EIM MIWKRLND GKNWRHVYKAL LLEYLIKTGS+KV +
Sbjct: 61  AFSEIMQMIWKRLNDHGKNWRHVYKALILLEYLIKTGSEKVAQ 103

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|45551527|ref|NP_729266.2| liquid facets, isoform A [Drosophila melanogaster] gi|45552973|ref|NP_996013.1| liquid facets, isoform E [Drosophila melanogaster] gi|45446007|gb|AAF50543.3| liquid facets, isoform A [Drosophila melanogaster] gi|45446008|gb|AAS65058.1| liquid facets, isoform E [Drosophila melanogaster] gi|374275917|gb|AEZ02856.1| FI19443p1 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442630805|ref|NP_001261528.1| liquid facets, isoform J [Drosophila melanogaster] gi|440215433|gb|AGB94223.1| liquid facets, isoform J [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442630803|ref|NP_001261527.1| liquid facets, isoform I [Drosophila melanogaster] gi|440215432|gb|AGB94222.1| liquid facets, isoform I [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|357625792|gb|EHJ76112.1| hypothetical protein KGM_12778 [Danaus plexippus] Back     alignment and taxonomy information
>gi|189240526|ref|XP_972038.2| PREDICTED: similar to liquid facets [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328722140|ref|XP_001945806.2| PREDICTED: epsin-2-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328722138|ref|XP_003247492.1| PREDICTED: epsin-2-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|157120636|ref|XP_001659698.1| liquid facets [Aedes aegypti] gi|108874863|gb|EAT39088.1| AAEL009088-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|195125691|ref|XP_002007311.1| GI12871 [Drosophila mojavensis] gi|193918920|gb|EDW17787.1| GI12871 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query194
FB|FBgn0028582 831 lqf "liquid facets" [Drosophil 0.530 0.123 0.834 6.4e-43
UNIPROTKB|F1N579 576 EPN1 "Uncharacterized protein" 0.469 0.157 0.791 5.5e-38
MGI|MGI:1333763 575 Epn1 "epsin 1" [Mus musculus ( 0.469 0.158 0.791 8.9e-38
UNIPROTKB|Q9Y6I3 576 EPN1 "Epsin-1" [Homo sapiens ( 0.469 0.157 0.791 8.9e-38
RGD|619772 575 Epn1 "Epsin 1" [Rattus norvegi 0.469 0.158 0.791 8.9e-38
UNIPROTKB|O88339 575 Epn1 "Epsin-1" [Rattus norvegi 0.469 0.158 0.791 8.9e-38
UNIPROTKB|E2R621 571 EPN1 "Uncharacterized protein" 0.469 0.159 0.791 8.9e-38
UNIPROTKB|F6X6H3 569 EPN1 "Uncharacterized protein" 0.469 0.159 0.791 8.9e-38
ZFIN|ZDB-GENE-040426-2680 636 epn1 "epsin 1" [Danio rerio (t 0.469 0.143 0.780 2.3e-37
UNIPROTKB|E1BXB5 411 EPN2 "Uncharacterized protein" 0.469 0.221 0.769 1.7e-36
FB|FBgn0028582 lqf "liquid facets" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 461 (167.3 bits), Expect = 6.4e-43, P = 6.4e-43
 Identities = 86/103 (83%), Positives = 97/103 (94%)

Query:    77 MRRQREDIQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVV 136
             MR+Q++D+Q  VAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPS+++MSEIA+LTYNVV
Sbjct:     1 MRKQKDDMQVNVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSAAIMSEIAELTYNVV 60

Query:   137 AFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTR 179
             AF+EIM MIWKRLND GKNWRHVYKAL LLEYLIKTGS+KV +
Sbjct:    61 AFSEIMQMIWKRLNDHGKNWRHVYKALILLEYLIKTGSEKVAQ 103
GO:0048488 "synaptic vesicle endocytosis" evidence=NAS
GO:0007269 "neurotransmitter secretion" evidence=NAS
GO:0006897 "endocytosis" evidence=IMP;NAS;TAS
GO:0009997 "negative regulation of cardioblast cell fate specification" evidence=IMP
GO:0008593 "regulation of Notch signaling pathway" evidence=IMP
GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP
GO:0015032 "storage protein import into fat body" evidence=IDA
GO:0006914 "autophagy" evidence=IDA
UNIPROTKB|F1N579 EPN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1333763 Epn1 "epsin 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y6I3 EPN1 "Epsin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|619772 Epn1 "Epsin 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O88339 Epn1 "Epsin-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R621 EPN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6X6H3 EPN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2680 epn1 "epsin 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXB5 EPN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O74423ENT1_SCHPONo assigned EC number0.52630.48450.1331yesN/A
Q9Y6I3EPN1_HUMANNo assigned EC number0.80890.45360.1527yesN/A
O88339EPN1_RATNo assigned EC number0.80890.45360.1530yesN/A
Q80VP1EPN1_MOUSENo assigned EC number0.80890.45360.1530yesN/A
Q54EH1EPN_DICDINo assigned EC number0.50520.48960.1384yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
cd03571123 cd03571, ENTH_epsin, ENTH domain, Epsin family; Th 1e-45
pfam01417124 pfam01417, ENTH, ENTH domain 1e-43
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 4e-28
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 9e-21
cd03571123 cd03571, ENTH_epsin, ENTH domain, Epsin family; Th 1e-16
pfam01417124 pfam01417, ENTH, ENTH domain 4e-14
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 9e-09
>gnl|CDD|239627 cd03571, ENTH_epsin, ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information 
 Score =  146 bits (371), Expect = 1e-45
 Identities = 55/74 (74%), Positives = 66/74 (89%)

Query: 104 DAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKAL 163
           +A++KVREATSNDPWGPS +LM+EIA  TYN V F EIM+M+WKRLND GKNWRHVYKAL
Sbjct: 1   EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKAL 60

Query: 164 SLLEYLIKTGSDKV 177
           +LLEYL+K GS++V
Sbjct: 61  TLLEYLLKNGSERV 74

A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding. Length = 123
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|239627 cd03571, ENTH_epsin, ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 194
KOG2056|consensus 336 100.0
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 100.0
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 100.0
KOG2057|consensus 499 99.97
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.94
KOG2056|consensus336 99.84
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 99.81
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.79
KOG2057|consensus 499 99.71
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.71
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 99.59
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.17
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 98.97
PF07651 280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 98.86
KOG0251|consensus 491 98.48
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.05
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 97.83
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 97.54
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 97.51
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 97.4
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 97.36
cd03561133 VHS VHS domain family; The VHS domain is present i 97.24
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 97.2
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 96.27
KOG1087|consensus 470 93.71
KOG2199|consensus 462 90.33
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 86.37
KOG3208|consensus231 80.96
>KOG2056|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.5e-40  Score=294.58  Aligned_cols=108  Identities=58%  Similarity=0.951  Sum_probs=106.0

Q ss_pred             hhhHHHHHHHHhhhccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccChhhHHHHHHHHHHHhCcCCCchHHHHHHHHH
Q psy4488          86 EGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSL  165 (194)
Q Consensus        86 ~s~~~~~r~~kn~v~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~L  165 (194)
                      ++++.+.|+|+|+|++|+++|++|++||+||||||++++|.+||++||++.+|.+||.||||||++.|++||||||||+|
T Consensus         3 ~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaLtl   82 (336)
T KOG2056|consen    3 MSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKALTL   82 (336)
T ss_pred             ccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChhHHHhhhhhhhhcccccC
Q psy4488         166 LEYLIKTGSDKVTRIGGIFTHLIKTRSD  193 (194)
Q Consensus       166 LeyLlknGse~vv~~~r~~~~~i~~L~d  193 (194)
                      |||||+||||+||+||+.|+++|++|++
T Consensus        83 leyLl~~GSErv~~~~ren~~~I~tL~~  110 (336)
T KOG2056|consen   83 LEYLLKNGSERVVDETRENIYTIETLKD  110 (336)
T ss_pred             HHHHHhcCcHHHHHHHHhhhHHHHHHhh
Confidence            9999999999999999999999999986

>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>KOG2057|consensus Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>KOG2056|consensus Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG2057|consensus Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0251|consensus Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG1087|consensus Back     alignment and domain information
>KOG2199|consensus Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>KOG3208|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
1h0a_A158 Epsin Enth Bound To Ins(1,4,5)p3 Length = 158 2e-42
1inz_A148 Solution Structure Of The Epsin N-Terminal Homology 4e-42
1eyh_A144 Crystal Structure Of The Epsin N-Terminal Homology 8e-39
1edu_A149 Crystal Structure Of The Enth Domain Of Rat Epsin 1 2e-36
1xgw_A176 The Crystal Structure Of Human Enthoprotin N-Termin 2e-21
2qy7_A147 Crystal Structure Of Human Epsinr Enth Domain Lengt 9e-21
3onk_A150 Yeast Ent3_enth Domain Length = 150 2e-18
>pdb|1H0A|A Chain A, Epsin Enth Bound To Ins(1,4,5)p3 Length = 158 Back     alignment and structure 
Iteration: 1

 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 92/107 (85%)
Query: 87  GVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIW 146
             + LRR +KN+ HNYS+A++KVREATSNDPWGPSSSLMSEIADLTYNVVAF+EIM+MIW
Sbjct: 2   STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIW 61
Query: 147 KRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193
           KRLND GKNWRHVYKA++L+EYLIKTGS++V++      + ++T  D
Sbjct: 62  KRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKD 108
>pdb|1INZ|A Chain A, Solution Structure Of The Epsin N-Terminal Homology (Enth) Domain Of Human Epsin Length = 148 Back     alignment and structure
>pdb|1EYH|A Chain A, Crystal Structure Of The Epsin N-Terminal Homology (Enth) Domain At 1.56 Angstrom Resolution Length = 144 Back     alignment and structure
>pdb|1EDU|A Chain A, Crystal Structure Of The Enth Domain Of Rat Epsin 1 Length = 149 Back     alignment and structure
>pdb|1XGW|A Chain A, The Crystal Structure Of Human Enthoprotin N-Terminal Domain Length = 176 Back     alignment and structure
>pdb|2QY7|A Chain A, Crystal Structure Of Human Epsinr Enth Domain Length = 147 Back     alignment and structure
>pdb|3ONK|A Chain A, Yeast Ent3_enth Domain Length = 150 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query194
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 6e-39
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 3e-17
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 2e-37
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 5e-16
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 4e-35
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 6e-15
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 4e-34
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 1e-13
3zyl_A 271 Phosphatidylinositol-binding clathrin assembly PR; 9e-20
3zym_A 310 Phosphatidylinositol-binding clathrin assembly PR 2e-18
1hx8_A 299 Synapse-enriched clathrin adaptor protein LAP; all 1e-14
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 1e-14
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 4e-08
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure
 Score =  129 bits (326), Expect = 6e-39
 Identities = 74/110 (67%), Positives = 93/110 (84%)

Query: 84  IQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMA 143
            +   + LRR +KN+ HNYS+A++KVREATSNDPWGPSSSLMSEIADLTYNVVAF+EIM+
Sbjct: 3   SRMSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMS 62

Query: 144 MIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193
           MIWKRLND GKNWRHVYKA++L+EYLIKTGS++V++      + ++T  D
Sbjct: 63  MIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKD 112
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Length = 176 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Length = 176 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150 Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Length = 140 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Length = 152 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query194
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 100.0
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 100.0
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 100.0
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 99.93
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.85
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.85
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.84
3zyl_A 271 Phosphatidylinositol-binding clathrin assembly PR; 99.64
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.63
3zym_A 310 Phosphatidylinositol-binding clathrin assembly PR 99.63
1hx8_A 299 Synapse-enriched clathrin adaptor protein LAP; all 99.31
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 99.04
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 97.65
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 97.62
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 97.61
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 97.55
3zyq_A 226 Hepatocyte growth factor-regulated tyrosine kinas 97.44
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 97.42
3g2s_A149 C-terminal fragment of sortilin-related receptor; 97.41
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 97.3
1dvp_A 220 HRS, hepatocyte growth factor-regulated tyrosine k 97.15
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
Probab=100.00  E-value=3.8e-44  Score=288.15  Aligned_cols=110  Identities=67%  Similarity=1.067  Sum_probs=106.8

Q ss_pred             HHhhhHHHHHHHHhhhccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccChhhHHHHHHHHHHHhCcCCCchHHHHHHH
Q psy4488          84 IQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKAL  163 (194)
Q Consensus        84 ~~~s~~~~~r~~kn~v~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~~~~~~Im~~l~kRL~~~~k~WR~vyKsL  163 (194)
                      +++++++++|+|||+++|||++|++|++|||||||||++++|++||++||++++|++||++||+||++++++||||||||
T Consensus         3 ~~~~~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL   82 (148)
T 1inz_A            3 SRMSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAM   82 (148)
T ss_dssp             SSCCCCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHH
T ss_pred             chhhHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCChhHHHhhhhhhhhcccccC
Q psy4488         164 SLLEYLIKTGSDKVTRIGGIFTHLIKTRSD  193 (194)
Q Consensus       164 ~LLeyLlknGse~vv~~~r~~~~~i~~L~d  193 (194)
                      +||||||+||||+||+++++|++.|++|++
T Consensus        83 ~lleyLl~nGse~vv~~~r~~~~~I~~L~~  112 (148)
T 1inz_A           83 TLMEYLIKTGSERVSQQCKENMYAVQTLKD  112 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhHHHHHhhcc
Confidence            999999999999999999999999999874
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 194
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 6e-31
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 2e-17
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 2e-21
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 0.001
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 5e-20
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 0.001
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (270), Expect = 6e-31
 Identities = 69/94 (73%), Positives = 84/94 (89%)

Query: 100 HNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHV 159
           HNYS+A++KVREATSNDPWGPSSSLMSEIADLTYNVVAF+EIM+MIWKRLND GKNWRHV
Sbjct: 1   HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHV 60

Query: 160 YKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193
           YKA++L+EYLIKTGS++V++      + ++T  D
Sbjct: 61  YKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKD 94
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query194
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.97
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.84
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.81
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.66
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 97.66
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 97.61
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 97.56
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 97.37
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 97.17
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 92.36
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 89.47
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=9e-32  Score=211.65  Aligned_cols=94  Identities=73%  Similarity=1.156  Sum_probs=91.7

Q ss_pred             ccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccChhhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHH
Q psy4488         100 HNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTR  179 (194)
Q Consensus       100 ~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~  179 (194)
                      .|||++|++|++|||+|||||++++|++|+++||++..|..||.+||+||.+++++||+|||||+||+|||+|||++|++
T Consensus         1 ~n~s~~e~~v~~ATs~d~~~p~~k~~~~I~~~t~~~~~~~~i~~~L~kRl~~~~k~Wrvv~K~L~ll~~Ll~~G~~~~v~   80 (144)
T d1eyha_           1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ   80 (144)
T ss_dssp             CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccccC
Q psy4488         180 IGGIFTHLIKTRSD  193 (194)
Q Consensus       180 ~~r~~~~~i~~L~d  193 (194)
                      +++.|.+.|+.|++
T Consensus        81 ~~~~~~~~i~~l~~   94 (144)
T d1eyha_          81 QCKENMYAVQTLKD   94 (144)
T ss_dssp             HHHHTHHHHHGGGG
T ss_pred             HHHHhHHHHHhhhc
Confidence            99999999999875
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure