Psyllid ID: psy4504

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MSVWLRRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVACTIFAVIYNVTSPSYNYVT
Secondary Structure (PSIPRED)
ccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccEcccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
msvwlrrslgtsvidsdvylVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVGKFNTTSFVQVSLITFFKDFlrgslgtsvidsdvylVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAgelagagsgypvSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVACTIFAVIYNvtspsynyvt
Flexible Loop (DISEMBL)
msvwlrrslgtsvidsdVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVACTIFAVIYNVTSPSYNYVT
Low Complexity Region (SEG)
MSVWLRRSLGTSVIDSDVYLVGASGGvyallaahlanvllnynQMEFGIVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGvyallaahlanvllnynQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYvahltgalagltigllvlKNFEQKLREQLMWWIALGVYVACTIFAVIYNVTSPSYNYVT
Disordered region (IsUnstruct)
**VWLRRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVACTIFAVIYNVTSPSY****
Disordered Region (DISOPRED)
*SVWLRRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVACTIFAVIYNVTSPSYNYVT
Disordered Region (DISEMBL)
MSVWLRRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVACTIFAVIYNVTSPSYNYVT
Disordered Region (DISPRO)
MSVWLRRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVACTIFAVIYNVTSPSYN***
Transmembrane Helix (TMHMM)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVWLRRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVGKFNTTSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVACTIFAVIYNVTSPSYNYVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
P20350	355	Protein rhomboid OS=Droso	no	N/A	0.589	0.363	0.607	5e-37
A2AGA4	302	Rhomboid-related protein	yes	N/A	0.602	0.437	0.446	8e-26
O75783	438	Rhomboid-related protein	yes	N/A	0.648	0.324	0.394	2e-23
Q8VC82	373	Rhomboid-related protein	no	N/A	0.643	0.378	0.390	3e-23
Q9NX52	303	Rhomboid-related protein	no	N/A	0.593	0.429	0.445	6e-23
P58872	404	Rhomboid-related protein	no	N/A	0.584	0.316	0.416	1e-22
P58873	404	Rhomboid-related protein	no	N/A	0.584	0.316	0.416	2e-22
O88779	164	Rhomboid-related protein	no	N/A	0.589	0.786	0.402	3e-21
Q19821	356	Rhomboid-related protein	yes	N/A	0.598	0.367	0.360	7e-15
P34356	435	Rhomboid-related protein	no	N/A	0.579	0.291	0.274	4e-08

>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2

 Score =  154 bits (388), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 101/130 (77%), Gaps = 1/130 (0%)

Query: 81  GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFA 140
           GSLGTSV+DS+V+LVGASGGVYALLAAHLAN+ LNY  M+    +L ++ +  S D+G+A
Sbjct: 200 GSLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVIFVSCDLGYA 259

Query: 141 VYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVA 200
           +Y +Y    A A  G  VSY+AHLTGALAGLTIG LVLKNF  +  EQL+WW+ALGVY A
Sbjct: 260 LYTQYFDGSAFA-KGPQVSYIAHLTGALAGLTIGFLVLKNFGHREYEQLIWWLALGVYCA 318

Query: 201 CTIFAVIYNV 210
            T+FA+++N+
Sbjct: 319 FTVFAIVFNL 328

Acts early in embryonic development to establish position along the dorsoventral axis and then again later to specify the fate of neuronal precursor cells. Involved in EGF receptor signaling; cleaves Spitz to release the active growth factor.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|A2AGA4|RHBL2_MOUSE Rhomboid-related protein 2 OS=Mus musculus GN=Rhbdl2 PE=1 SV=1

 Score =  117 bits (292), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 91/139 (65%), Gaps = 7/139 (5%)

Query: 79  LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRLLAIFVVASAD 136
           L GSL +S+ D    LVGASGGVYAL+  +  NV++N+ +M   FGIVRLL I ++ ++D
Sbjct: 167 LAGSLASSIFDPLKSLVGASGGVYALMGGYFMNVIVNFREMIPAFGIVRLLVIILIVASD 226

Query: 137 VGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALG 196
           +GFA+Y R+        +G PVS+ AH+ G  AG++IG  V   F++ L +   +WIA+ 
Sbjct: 227 MGFALYRRFFV----PANGSPVSFAAHIAGGFAGMSIGYTVFSCFDKTLLKDPRFWIAIA 282

Query: 197 VYVACTIFAVIYNV-TSPS 214
            YVAC +FAV +N+  SP+
Sbjct: 283 AYVACLLFAVFFNIFLSPA 301

Involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors. Known substrate: EFNB3.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|O75783|RHBL1_HUMAN Rhomboid-related protein 1 OS=Homo sapiens GN=RHBDL1 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 96/147 (65%), Gaps = 5/147 (3%)

Query: 66  FVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQME--FGI 123
            +++SL+ +    L GSL  S+ D    +VG SGGVYAL +AHLANV++N+  M   + +
Sbjct: 281 LLRISLL-YLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKL 339

Query: 124 VRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQ 183
           +R++   V  S++VG AV+ R++  L  +G     S++AHL GA+ G+++GL +L+++E+
Sbjct: 340 LRMVLALVCMSSEVGRAVWLRFSPPLPASGPQ--PSFMAHLAGAVVGVSMGLTILRSYEE 397

Query: 184 KLREQLMWWIALGVYVACTIFAVIYNV 210
           +LR+Q  WW+ L  Y    +FAV +NV
Sbjct: 398 RLRDQCGWWVVLLAYGTFLLFAVFWNV 424

May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q8VC82|RHBL1_MOUSE Rhomboid-related protein 1 OS=Mus musculus GN=Rhbdl1 PE=2 SV=1

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 96/146 (65%), Gaps = 5/146 (3%)

Query: 67  VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQME--FGIV 124
           +++SL+ +    L GSL  S+ D    +VG SGGVYAL +AHLANV++N+  M   + ++
Sbjct: 217 LRISLL-YLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLL 275

Query: 125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQK 184
           R++   V  S++VG AV+ R++  L  +G     S++AHL GA+ G+++GL +L+++E++
Sbjct: 276 RMVLALVCMSSEVGRAVWLRFSPPLPASGPQ--PSFMAHLAGAVVGVSMGLTILRSYEER 333

Query: 185 LREQLMWWIALGVYVACTIFAVIYNV 210
           LR+Q  WW+ L  Y    +FA+ +NV
Sbjct: 334 LRDQCGWWVVLLAYGTFLLFAIFWNV 359

May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q9NX52|RHBL2_HUMAN Rhomboid-related protein 2 OS=Homo sapiens GN=RHBDL2 PE=1 SV=2

 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 88/137 (64%), Gaps = 7/137 (5%)

Query: 81  GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRLLAIFVVASADVG 138
           GSL +S+ D   YLVGASGGVYAL+  +  NVL+N+ +M   FGI RLL I ++   D+G
Sbjct: 170 GSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQEMIPAFGIFRLLIIILIIVLDMG 229

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
           FA+Y R+     G+    PVS+ AH+ G  AG++IG  V   F++ L +   +WIA+  Y
Sbjct: 230 FALYRRFFVPEDGS----PVSFAAHIAGGFAGMSIGYTVFSCFDKALLKDPRFWIAIAAY 285

Query: 199 VACTIFAVIYNV-TSPS 214
           +AC +FAV +N+  SP+
Sbjct: 286 LACVLFAVFFNIFLSPA 302

Involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors. Known substrate: EFNB3.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 89/132 (67%), Gaps = 4/132 (3%)

Query: 81  GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRLLAIFVVASADVG 138
           GSL  SV D    +VG+SGGVYAL++AHLAN+++N++ M  +F ++R+    +  S + G
Sbjct: 261 GSLAVSVADMTAPVVGSSGGVYALVSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFG 320

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
            AV+ R+    A     +P S+VAHL G   G+T+G++VL+N+EQ+L++Q +WWI + +Y
Sbjct: 321 RAVWLRFHPS-AYPPCPHP-SFVAHLGGVAVGITLGVVVLRNYEQRLQDQSLWWIFVAMY 378

Query: 199 VACTIFAVIYNV 210
               +FAV +N+
Sbjct: 379 TVFVLFAVFWNI 390

May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 89/132 (67%), Gaps = 4/132 (3%)

Query: 81  GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQM--EFGIVRLLAIFVVASADVG 138
           GSL  SV D    +VG+SGGVYAL++AHLAN+++N++ M  +F ++R+    +  S + G
Sbjct: 261 GSLAVSVADMTAPVVGSSGGVYALVSAHLANIVMNWSGMKCQFKLLRMAVALICMSMEFG 320

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
            AV+ R+    A     +P S+VAHL G   G+T+G++VL+N+EQ+L++Q +WWI + +Y
Sbjct: 321 RAVWLRFHPS-AYPPCPHP-SFVAHLGGVAVGITLGVVVLRNYEQRLQDQSLWWIFVTMY 378

Query: 199 VACTIFAVIYNV 210
               +FAV +N+
Sbjct: 379 TIFVLFAVFWNI 390

May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|O88779|RHBL1_RAT Rhomboid-related protein 1 (Fragment) OS=Rattus norvegicus GN=Rhbdl1 PE=2 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 89/134 (66%), Gaps = 5/134 (3%)

Query: 67  VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQME--FGIV 124
           +++SL+ +    L GSL  S+ D    +VG SGGVYAL +AHLANV++N+  M   + ++
Sbjct: 30  LRISLL-YLAGVLAGSLTVSITDMRAPVVGGSGGVYALCSAHLANVVMNWAGMRCPYKLL 88

Query: 125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQK 184
           R++   V  S++VG AV+ R++  L    SG   S++AHL GA+ G+++GL +L+++E++
Sbjct: 89  RMVLALVCMSSEVGRAVWLRFSPPLPA--SGPQPSFMAHLAGAVVGVSMGLTILRSYEER 146

Query: 185 LREQLMWWIALGVY 198
           LR+Q  WW+ L  Y
Sbjct: 147 LRDQCGWWVVLLAY 160

May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q19821|ROM1_CAEEL Rhomboid-related protein 1 OS=Caenorhabditis elegans GN=rom-1 PE=3 SV=2

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 5/136 (3%)

Query: 81  GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFA 140
           GSL    ID +  LVGAS GVYAL+ AH+ANV+LN+++M    +R+L +FV    D G A
Sbjct: 216 GSLLQYAIDPNSLLVGASAGVYALIFAHVANVILNWHEMPLRWIRVLVLFVFIFLDFGGA 275

Query: 141 VYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVA 200
           ++ R+      +     VS++AH+ GA+ GL  G +VL N  +   E+++ ++ L +Y A
Sbjct: 276 IHRRFYTNDCDS-----VSHLAHIAGAVTGLFFGYVVLYNVVEHRIEKIIRYVCLFLYSA 330

Query: 201 CTIFAVIYNVTSPSYN 216
                +I+ +    Y+
Sbjct: 331 FFATTIIFVIVRQPYS 346

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|P34356|ROM2_CAEEL Rhomboid-related protein 2 OS=Caenorhabditis elegans GN=rom-2 PE=3 SV=2

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 72  ITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFV 131
           I +F   L GS+ +  +D  V+L G + G ++L+A+H+  +  N+ +ME    RL  + V
Sbjct: 209 ILYFMGVLFGSILSLALDPTVFLCGGAAGSFSLIASHITTIATNFKEMENATCRLPILIV 268

Query: 132 VASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMW 191
            A+ D   AVY R+        S Y      HL G +AG+    ++ +  +      + +
Sbjct: 269 FAALDYVLAVYQRFFAPRIDKVSMY-----GHLGGLVAGILFTFILFRGSKPSRFYTVSF 323

Query: 192 WIAL---GVYVACTI 203
           W++L   G ++A  I
Sbjct: 324 WVSLVLSGFFIAICI 338

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
345482414	415	PREDICTED: rhomboid-related protein 3 [N	0.616	0.325	0.802	6e-56
383859637	417	PREDICTED: rhomboid-related protein 3-li	0.607	0.318	0.795	6e-56
340720858	417	PREDICTED: rhomboid-related protein 3-li	0.607	0.318	0.795	9e-56
380028917	265	PREDICTED: protein rhomboid-like [Apis f	0.607	0.501	0.795	2e-55
328793476	177	PREDICTED: protein rhomboid-like, partia	0.607	0.751	0.795	3e-55
307166127	140	Protein rhomboid [Camponotus floridanus]	0.598	0.935	0.807	4e-55
242020445	297	protein rhomboid, putative [Pediculus hu	0.598	0.441	0.807	7e-55
307193790	217	Protein rhomboid [Harpegnathos saltator]	0.598	0.603	0.8	2e-54
321477335	298	hypothetical protein DAPPUDRAFT_127055 [	0.616	0.453	0.776	4e-54
301176639	438	uncharacterized protein LOC657740 [Tribo	0.593	0.296	0.753	2e-51

>gi|345482414|ref|XP_001607800.2| PREDICTED: rhomboid-related protein 3 [Nasonia vitripennis]

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 110/137 (80%), Positives = 120/137 (87%), Gaps = 2/137 (1%)

Query: 79  LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVG 138
           L GSLGTSV D+DVYLVGASGGVYALLAAHLANVLLNYN MEFGIVRL+ IFV+ASADVG
Sbjct: 280 LAGSLGTSVFDTDVYLVGASGGVYALLAAHLANVLLNYNNMEFGIVRLIGIFVIASADVG 339

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
           FA+Y+RYA E    G   PVSYVAHLTGALAGLTIGLLVLKNFEQ+L EQL+WW+ALGVY
Sbjct: 340 FAIYDRYAAEQQQLGP--PVSYVAHLTGALAGLTIGLLVLKNFEQRLHEQLLWWVALGVY 397

Query: 199 VACTIFAVIYNVTSPSY 215
            ACTIFAV+YN+  P Y
Sbjct: 398 AACTIFAVMYNLMHPDY 414

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859637|ref|XP_003705299.1| PREDICTED: rhomboid-related protein 3-like [Megachile rotundata]

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 120/137 (87%), Gaps = 4/137 (2%)

Query: 79  LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVG 138
           L GSLGTSV D+DVYLVGASGGVYALLAAHLANVLLNYN MEFGIVRL+ IFV+ASADVG
Sbjct: 284 LAGSLGTSVFDTDVYLVGASGGVYALLAAHLANVLLNYNNMEFGIVRLIGIFVIASADVG 343

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
           FA+Y+RYA E  G     PVSYVAHLTGALAGLTIGLLVLKNFEQ+L EQL+WW+ALGVY
Sbjct: 344 FAIYDRYAAEQMGP----PVSYVAHLTGALAGLTIGLLVLKNFEQRLHEQLLWWVALGVY 399

Query: 199 VACTIFAVIYNVTSPSY 215
            ACTIFA++YN+  P Y
Sbjct: 400 AACTIFAIMYNLMHPDY 416

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720858|ref|XP_003398846.1| PREDICTED: rhomboid-related protein 3-like [Bombus terrestris] gi|350397989|ref|XP_003485053.1| PREDICTED: rhomboid-related protein 3-like [Bombus impatiens]

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 120/137 (87%), Gaps = 4/137 (2%)

Query: 79  LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVG 138
           L GSLGTSV D+DVYLVGASGGVYALLAAHLANVLLNYN MEFGIVRL+ IFV+ASADVG
Sbjct: 284 LAGSLGTSVFDTDVYLVGASGGVYALLAAHLANVLLNYNNMEFGIVRLIGIFVIASADVG 343

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
           FA+Y+RYA E  G     PVSYVAHLTGALAGLTIGLLVLKNFEQ+L EQL+WW+ALGVY
Sbjct: 344 FAIYDRYAAEQIGP----PVSYVAHLTGALAGLTIGLLVLKNFEQRLHEQLLWWVALGVY 399

Query: 199 VACTIFAVIYNVTSPSY 215
            ACTIFA++YN+  P Y
Sbjct: 400 AACTIFAIMYNLMHPDY 416

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028917|ref|XP_003698130.1| PREDICTED: protein rhomboid-like [Apis florea]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 120/137 (87%), Gaps = 4/137 (2%)

Query: 79  LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVG 138
           L GSLGTSV D+DVYLVGASGGVYALLAAHLANVLLNYN MEFGIVRL+ IFV+ASADVG
Sbjct: 132 LAGSLGTSVFDTDVYLVGASGGVYALLAAHLANVLLNYNNMEFGIVRLIGIFVIASADVG 191

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
           FA+Y+RYA E  G     PVSYVAHLTGALAGLTIGLLVLKNFEQ+L EQL+WW+ALGVY
Sbjct: 192 FAIYDRYAAEQMGP----PVSYVAHLTGALAGLTIGLLVLKNFEQRLHEQLLWWVALGVY 247

Query: 199 VACTIFAVIYNVTSPSY 215
            ACTIFA++YN+  P Y
Sbjct: 248 AACTIFAIMYNLMHPDY 264

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793476|ref|XP_003251883.1| PREDICTED: protein rhomboid-like, partial [Apis mellifera]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 120/137 (87%), Gaps = 4/137 (2%)

Query: 79  LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVG 138
           L GSLGTSV D+DVYLVGASGGVYALLAAHLANVLLNYN MEFGIVRL+ IFV+ASADVG
Sbjct: 44  LAGSLGTSVFDTDVYLVGASGGVYALLAAHLANVLLNYNNMEFGIVRLIGIFVIASADVG 103

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
           FA+Y+RYA E  G     PVSYVAHLTGALAGLTIGLLVLKNFEQ+L EQL+WW+ALGVY
Sbjct: 104 FAIYDRYAAEQMGP----PVSYVAHLTGALAGLTIGLLVLKNFEQRLHEQLLWWVALGVY 159

Query: 199 VACTIFAVIYNVTSPSY 215
            ACTIFA++YN+  P Y
Sbjct: 160 AACTIFAIMYNLMHPDY 176

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166127|gb|EFN60376.1| Protein rhomboid [Camponotus floridanus]

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/135 (80%), Positives = 119/135 (88%), Gaps = 4/135 (2%)

Query: 81  GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFA 140
           GSLGTSV D+DVYLVGASGGVYALLAAHLANVLLNYN MEFGIVRL+ IFV+ASADVGFA
Sbjct: 9   GSLGTSVFDTDVYLVGASGGVYALLAAHLANVLLNYNNMEFGIVRLIGIFVIASADVGFA 68

Query: 141 VYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVA 200
           +Y+RYA E  G     PVSYVAHLTGALAGLTIGLLVLKNFEQ+L EQL+WW+ALGVY A
Sbjct: 69  IYDRYAAEQMGP----PVSYVAHLTGALAGLTIGLLVLKNFEQRLHEQLLWWVALGVYAA 124

Query: 201 CTIFAVIYNVTSPSY 215
           CTIFAV+YN+  P Y
Sbjct: 125 CTIFAVMYNLMHPDY 139

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020445|ref|XP_002430665.1| protein rhomboid, putative [Pediculus humanus corporis] gi|212515840|gb|EEB17927.1| protein rhomboid, putative [Pediculus humanus corporis]

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 109/135 (80%), Positives = 120/135 (88%), Gaps = 4/135 (2%)

Query: 79  LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVG 138
           L GSLGTSV D+DVYLVGASGGVYALLAAHLAN+LLNY+ MEFGIVRL+ IFVVASADVG
Sbjct: 161 LAGSLGTSVFDTDVYLVGASGGVYALLAAHLANILLNYSNMEFGIVRLIGIFVVASADVG 220

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
           FA+Y+RYA E  G     PVSYVAHLTGALAGLTIGLLVLKNFEQKL EQLMWW+ALGVY
Sbjct: 221 FAIYDRYAAEQVGP----PVSYVAHLTGALAGLTIGLLVLKNFEQKLHEQLMWWVALGVY 276

Query: 199 VACTIFAVIYNVTSP 213
            ACTIFA+++NV +P
Sbjct: 277 AACTIFAILFNVFNP 291

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193790|gb|EFN76463.1| Protein rhomboid [Harpegnathos saltator]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/135 (80%), Positives = 119/135 (88%), Gaps = 4/135 (2%)

Query: 79  LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVG 138
           L GSLGTSV D+DVYLVGASGGVYALLAAHLANVLLNYN MEFGIVRL+ IFV+ASADVG
Sbjct: 87  LAGSLGTSVFDTDVYLVGASGGVYALLAAHLANVLLNYNNMEFGIVRLIGIFVIASADVG 146

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
           FA+Y+RYA E  G     PVSYVAHLTGALAGLTIGLLVLKNFEQ+L EQL+WW+ALGVY
Sbjct: 147 FAIYDRYAAEQMGP----PVSYVAHLTGALAGLTIGLLVLKNFEQRLHEQLLWWVALGVY 202

Query: 199 VACTIFAVIYNVTSP 213
            ACTIFA++YN+  P
Sbjct: 203 AACTIFAIMYNLMHP 217

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321477335|gb|EFX88294.1| hypothetical protein DAPPUDRAFT_127055 [Daphnia pulex]

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 120/139 (86%), Gaps = 4/139 (2%)

Query: 79  LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVG 138
           L GSLGTSV D+DVYLVGASGGVYALLAAHLANVLLNYN MEFGIVRL+ IF+VASADVG
Sbjct: 161 LAGSLGTSVFDTDVYLVGASGGVYALLAAHLANVLLNYNNMEFGIVRLIGIFIVASADVG 220

Query: 139 FAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVY 198
           FA+Y+RYA E  G     PVSYVAHLTGALAGLTIGLLVLKNFEQKL EQL+WW+ALGVY
Sbjct: 221 FAIYDRYAAEQVGP----PVSYVAHLTGALAGLTIGLLVLKNFEQKLHEQLIWWVALGVY 276

Query: 199 VACTIFAVIYNVTSPSYNY 217
            ACT+F +++NV +P   Y
Sbjct: 277 AACTLFGILFNVFNPDPFY 295

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301176639|ref|NP_001180378.1| uncharacterized protein LOC657740 [Tribolium castaneum] gi|300303954|gb|ADJ97386.1| rhomboid [Tribolium castaneum]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/134 (75%), Positives = 115/134 (85%), Gaps = 4/134 (2%)

Query: 81  GSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFA 140
           GSLGTSV D+DVYLVGASGGVYALLAAHLANVLLNYN M+ GI+RL  I  +AS DVG+A
Sbjct: 287 GSLGTSVFDTDVYLVGASGGVYALLAAHLANVLLNYNNMQCGILRLFGILAIASCDVGYA 346

Query: 141 VYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVA 200
           +Y+RYA E  G     PVSYVAHLTGALAGLTIGLLVLKNFEQKL EQL+WW+ALGVY A
Sbjct: 347 IYSRYAAEAMGP----PVSYVAHLTGALAGLTIGLLVLKNFEQKLHEQLLWWVALGVYAA 402

Query: 201 CTIFAVIYNVTSPS 214
           CTIFA+++NV +P+
Sbjct: 403 CTIFAILFNVMNPT 416

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
FB|FBgn0020248	485	stet "stem cell tumor" [Drosop	0.625	0.282	0.416	1.8e-23
FB|FBgn0004635	355	rho "rhomboid" [Drosophila mel	0.630	0.388	0.352	3e-19
MGI|MGI:3608413	302	Rhbdl2 "rhomboid, veinlet-like	0.652	0.473	0.331	5.5e-15
UNIPROTKB|B3KUN4	370	RHBDL2 "Rhomboid-related prote	0.652	0.386	0.317	5.6e-15
UNIPROTKB|E2QY16	351	RHBDL2 "Uncharacterized protei	0.652	0.407	0.317	5.5e-14
RGD|1308295	302	Rhbdl2 "rhomboid, veinlet-like	0.652	0.473	0.317	6.3e-14
UNIPROTKB|F1SV24	310	RHBDL2 "Uncharacterized protei	0.652	0.461	0.311	7.2e-14
FB|FBgn0003295	341	ru "roughoid" [Drosophila mela	0.630	0.404	0.300	8.3e-14
UNIPROTKB|Q9NX52	303	RHBDL2 "Rhomboid-related prote	0.652	0.471	0.317	1.1e-13
UNIPROTKB|B7Z1Y9	383	RHBDL2 "Rhomboid-related prote	0.652	0.373	0.317	2.6e-13

FB|FBgn0020248 stet "stem cell tumor" [Drosophila melanogaster (taxid:7227)]

 Score = 275 (101.9 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 62/149 (41%), Positives = 79/149 (53%)

Query:    74 FFKDFLRGSLGTSVIDSDVYLVGASGGXXXXXXXXXXXXXXXXXQMEFGIVRLLAIFVVA 133
             +F   L GSLGTS+ D DV+LVGASGG                 QM +G+++LL I V  
Sbjct:   311 YFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYHQMRYGVIKLLHILVFV 370

Query:   134 SADVGFAVYNRYAG-ELA-GAGSGY----------PVSYXXXXXXXXXXXXXXXXXXKNF 181
             S D GFA+Y RYAG EL  G+ S +           VSY                  K+F
Sbjct:   371 SFDFGFAIYARYAGDELQLGSSSEFLAIDQAETAGAVSYVAHLAGAIAGLTIGLLVLKSF 430

Query:   182 EQKLREQLMWWIALGVYVACTIFAVIYNV 210
             EQKL EQL+WWIALG Y+A  +FA+ +N+
Sbjct:   431 EQKLHEQLLWWIALGTYLALVVFAIAFNI 459

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

FB|FBgn0004635 rho "rhomboid" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 49/139 (35%), Positives = 71/139 (51%)

Query:    72 ITFFKDFLRGSLGTSVIDSDVYLVGASGGXXXXXXXXXXXXXXXXXQMEFGIVRLLAIFV 131
             + +      GSLGTSV+DS+V+LVGASGG                  M+    +L ++ +
Sbjct:   191 VIYMAGVFAGSLGTSVVDSEVFLVGASGGVYALLAAHLANITLNYAHMKSASTQLGSVVI 250

Query:   132 VASADVGFAVYNRYAGELAGAGSGYPVSYXXXXXXXXXXXXXXXXXXKNFEQKLREQLMW 191
               S D+G+A+Y +Y    A A  G  VSY                  KNF  +  EQL+W
Sbjct:   251 FVSCDLGYALYTQYFDGSAFA-KGPQVSYIAHLTGALAGLTIGFLVLKNFGHREYEQLIW 309

Query:   192 WIALGVYVACTIFAVIYNV 210
             W+ALGVY A T+FA+++N+
Sbjct:   310 WLALGVYCAFTVFAIVFNL 328

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0007474 "imaginal disc-derived wing vein specification" evidence=NAS;IMP;TAS

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA;ISM;TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0061331 "epithelial cell proliferation involved in Malpighian tubule morphogenesis" evidence=IMP

GO:0045742 "positive regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0046845 "branched duct epithelial cell fate determination, open tracheal system" evidence=TAS

GO:0030707 "ovarian follicle cell development" evidence=TAS

GO:0010629 "negative regulation of gene expression" evidence=IMP

GO:0007424 "open tracheal system development" evidence=TAS

GO:0001763 "morphogenesis of a branching structure" evidence=NAS

GO:0007432 "salivary gland boundary specification" evidence=NAS

GO:0038005 "peptide bond cleavage involved in epidermal growth factor receptor ligand maturation" evidence=IGI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0004252 "serine-type endopeptidase activity" evidence=ISM;IGI;IMP;IDA

GO:0007438 "oenocyte development" evidence=IGI;IMP

GO:0007479 "leg disc proximal/distal pattern formation" evidence=TAS

GO:0007420 "brain development" evidence=IMP

GO:0007431 "salivary gland development" evidence=TAS

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0035202 "tracheal pit formation in open tracheal system" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0006508 "proteolysis" evidence=IEA

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0035225 "determination of genital disc primordium" evidence=IMP

GO:0035311 "wing cell fate specification" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0048865 "stem cell fate commitment" evidence=IMP

GO:0045177 "apical part of cell" evidence=IDA

MGI|MGI:3608413 Rhbdl2 "rhomboid, veinlet-like 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 191 (72.3 bits), Expect = 5.5e-15, P = 5.5e-15
 Identities = 50/151 (33%), Positives = 75/151 (49%)

Query:    67 VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGXXXXXXXXXXXXXXXXXQM--EFGIV 124
             ++V L+ +    L GSL +S+ D    LVGASGG                 +M   FGIV
Sbjct:   156 LRVGLV-YLAGVLAGSLASSIFDPLKSLVGASGGVYALMGGYFMNVIVNFREMIPAFGIV 214

Query:   125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYXXXXXXXXXXXXXXXXXXKNFEQK 184
             RLL I ++ ++D+GFA+Y R+      A +G PVS+                    F++ 
Sbjct:   215 RLLVIILIVASDMGFALYRRF---FVPA-NGSPVSFAAHIAGGFAGMSIGYTVFSCFDKT 270

Query:   185 LREQLMWWIALGVYVACTIFAVIYNV-TSPS 214
             L +   +WIA+  YVAC +FAV +N+  SP+
Sbjct:   271 LLKDPRFWIAIAAYVACLLFAVFFNIFLSPA 301

GO:0004252 "serine-type endopeptidase activity" evidence=ISO;IMP

GO:0005886 "plasma membrane" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0008152 "metabolic process" evidence=ISO;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|B3KUN4 RHBDL2 "Rhomboid-related protein 2, C-terminal fragment" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
 Identities = 48/151 (31%), Positives = 73/151 (48%)

Query:    67 VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGXXXXXXXXXXXXXXXXXQM--EFGIV 124
             ++V L+ +    + GSL +S+ D   YLVGASGG                 +M   FGI 
Sbjct:   224 LRVGLV-YLAGVIAGSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQEMIPAFGIF 282

Query:   125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYXXXXXXXXXXXXXXXXXXKNFEQK 184
             RLL I ++   D+GFA+Y R+   +   GS  PVS+                    F++ 
Sbjct:   283 RLLIIILIIVLDMGFALYRRFF--VPEDGS--PVSFAAHIAGGFAGMSIGYTVFSCFDKA 338

Query:   185 LREQLMWWIALGVYVACTIFAVIYNV-TSPS 214
             L +   +WIA+  Y+AC +FAV +N+  SP+
Sbjct:   339 LLKDPRFWIAIAAYLACVLFAVFFNIFLSPA 369

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QY16 RHBDL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 185 (70.2 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 48/151 (31%), Positives = 74/151 (49%)

Query:    67 VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGXXXXXXXXXXXXXXXXXQM--EFGIV 124
             ++V L+ +    + GSL +S+ D   YLVGASGG                 +M   FGIV
Sbjct:   205 LRVGLV-YLAGVIAGSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFREMIPAFGIV 263

Query:   125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYXXXXXXXXXXXXXXXXXXKNFEQK 184
             RLL I ++  +D+GFA+Y R+   +   GS  PVS+                    F++ 
Sbjct:   264 RLLIIILIIMSDMGFALYRRFF--VPADGS--PVSFAAHIAGGFAGMSIGYTVFSCFDKA 319

Query:   185 LREQLMWWIALGVYVACTIFAVIYNV-TSPS 214
             L +   +W+A+  Y AC +FAV +N+  SP+
Sbjct:   320 LLKDPRFWMAIAAYFACVLFAVFFNIFLSPA 350

GO:0005886 "plasma membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1308295 Rhbdl2 "rhomboid, veinlet-like 2 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 48/151 (31%), Positives = 74/151 (49%)

Query:    67 VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGXXXXXXXXXXXXXXXXXQM--EFGIV 124
             ++V L+ +    L GSL +S+ D    LVGASGG                 +M    GIV
Sbjct:   156 LRVGLV-YLAGVLAGSLASSIFDPLKSLVGASGGVYALMGGYFMNVIVNFREMIPALGIV 214

Query:   125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYXXXXXXXXXXXXXXXXXXKNFEQK 184
             RLL I ++ ++D+GFA+Y R+      A +G PVS+                    F++ 
Sbjct:   215 RLLVIILIVASDMGFALYRRF---FVPA-NGSPVSFAAHIAGGFAGMSVGYTVFSCFDKT 270

Query:   185 LREQLMWWIALGVYVACTIFAVIYNV-TSPS 214
             L +   +WI++  YVAC +FAV +N+  SP+
Sbjct:   271 LLKDPRFWISIAAYVACLLFAVFFNIFLSPA 301

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0008152 "metabolic process" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SV24 RHBDL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 182 (69.1 bits), Expect = 7.2e-14, P = 7.2e-14
 Identities = 47/151 (31%), Positives = 74/151 (49%)

Query:    67 VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGXXXXXXXXXXXXXXXXXQM--EFGIV 124
             ++V L+ +    + GSL +S+ D    LVGASGG                 +M   FGIV
Sbjct:   164 LRVGLV-YLAGVIAGSLASSIFDPLKSLVGASGGVYALMGGYFMNVLVNFREMIPAFGIV 222

Query:   125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYXXXXXXXXXXXXXXXXXXKNFEQK 184
             RLL I ++ + D+GFA+Y R+      A +G PVS+                    F++ 
Sbjct:   223 RLLIIILIIALDMGFALYRRF---FVPA-NGSPVSFAAHIAGGFAGMSIGYTVFSCFDKA 278

Query:   185 LREQLMWWIALGVYVACTIFAVIYNV-TSPS 214
             L +   +W+A+  Y+AC +FAV +N+  SP+
Sbjct:   279 LLKDPRFWVAIAAYLACVLFAVFFNIFLSPA 309

GO:0005886 "plasma membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0003295 ru "roughoid" [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 8.3e-14, P = 8.3e-14
 Identities = 43/143 (30%), Positives = 70/143 (48%)

Query:    72 ITFFKDFLRGSLGTSVIDSDVYLVGASGGXXXXXXXXXXXXXXXXXQMEFGIVRLLAIFV 131
             + +    L GSLGTSV+DS+V+LVGASGG                 QM  G+++L+A+ +
Sbjct:   176 VIYMAGVLAGSLGTSVVDSEVFLVGASGGVYALLAAQLASLLLNFGQMRHGVIQLMAVIL 235

Query:   132 VASADVGFAVYNRYAGELA--GAGSGYPVSYXXXXXXXXXXXXXXXXXXKNFEQKLREQL 189
                 D+G+A+Y+R   ELA     +   VSY                  +  +  LR + 
Sbjct:   236 FVFCDLGYALYSR---ELAMHQLQTRPSVSYIAHMTGALAGISVGLLLLRQLDGGLRPRP 292

Query:   190 MWWIALGVYVACTIFAVIYNVTS 212
             + W+ALGV+   + F + +N+ +
Sbjct:   293 LRWLALGVWCIFSAFGIAFNLVN 315

GO:0042676 "compound eye cone cell fate commitment" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0001752 "compound eye photoreceptor fate commitment" evidence=IGI

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0007479 "leg disc proximal/distal pattern formation" evidence=TAS

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0003015 "heart process" evidence=IMP

GO:0045177 "apical part of cell" evidence=IDA

GO:0050714 "positive regulation of protein secretion" evidence=IGI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0001745 "compound eye morphogenesis" evidence=IMP

UNIPROTKB|Q9NX52 RHBDL2 "Rhomboid-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 48/151 (31%), Positives = 73/151 (48%)

Query:    67 VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGXXXXXXXXXXXXXXXXXQM--EFGIV 124
             ++V L+ +    + GSL +S+ D   YLVGASGG                 +M   FGI 
Sbjct:   157 LRVGLV-YLAGVIAGSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQEMIPAFGIF 215

Query:   125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYXXXXXXXXXXXXXXXXXXKNFEQK 184
             RLL I ++   D+GFA+Y R+   +   GS  PVS+                    F++ 
Sbjct:   216 RLLIIILIIVLDMGFALYRRFF--VPEDGS--PVSFAAHIAGGFAGMSIGYTVFSCFDKA 271

Query:   185 LREQLMWWIALGVYVACTIFAVIYNV-TSPS 214
             L +   +WIA+  Y+AC +FAV +N+  SP+
Sbjct:   272 LLKDPRFWIAIAAYLACVLFAVFFNIFLSPA 302

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|B7Z1Y9 RHBDL2 "Rhomboid-related protein 2, C-terminal fragment" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 48/151 (31%), Positives = 73/151 (48%)

Query:    67 VQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGXXXXXXXXXXXXXXXXXQM--EFGIV 124
             ++V L+ +    + GSL +S+ D   YLVGASGG                 +M   FGI 
Sbjct:   237 LRVGLV-YLAGVIAGSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQEMIPAFGIF 295

Query:   125 RLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYXXXXXXXXXXXXXXXXXXKNFEQK 184
             RLL I ++   D+GFA+Y R+   +   GS  PVS+                    F++ 
Sbjct:   296 RLLIIILIIVLDMGFALYRRFF--VPEDGS--PVSFAAHIAGGFAGMSIGYTVFSCFDKA 351

Query:   185 LREQLMWWIALGVYVACTIFAVIYNV-TSPS 214
             L +   +WIA+  Y+AC +FAV +N+  SP+
Sbjct:   352 LLKDPRFWIAIAAYLACVLFAVFFNIFLSPA 382

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	219
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	8e-08

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 49.5 bits (119), Expect = 8e-08
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 18/102 (17%)

Query: 81  GSLGTSVIDSDVY-LVGASGGVYALLAAHLANVLLNYNQMEF--GIVRLLAIFVVASADV 137
           GSL + +        VGASG ++ LL A L  +  N   +    G + LL   ++ +  +
Sbjct: 57  GSLLSYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLL 116

Query: 138 GFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLK 179
           GF                  +S  AHL G +AGL +G L+L+
Sbjct: 117 GFLPG---------------ISNFAHLGGLIAGLLLGFLLLR 143

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
KOG2289|consensus	316		99.93
PTZ00101	278	rhomboid-1 protease; Provisional	99.87
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.59
COG0705	228	Membrane associated serine protease [Amino acid tr	99.59
KOG2290|consensus	652		99.48
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.28
KOG2289|consensus	316		99.11
PTZ00101	278	rhomboid-1 protease; Provisional	97.36
KOG2632|consensus	258		96.55
COG0705	228	Membrane associated serine protease [Amino acid tr	95.12
KOG2980|consensus	310		92.53
KOG2290|consensus	652		89.87
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	80.41

>KOG2289|consensus

Probab=99.93  E-value=4.4e-27  Score=210.55  Aligned_cols=192  Identities=35%  Similarity=0.550  Sum_probs=153.1

Q ss_pred             cccccccC--CccccccchH---------hhHHHHHHHHHHhhcccccccChhHHHH----HHHHhcccC--ccchhhhh
Q psy4504           9 LGTSVIDS--DVYLVGASGG---------VYALLAAHLANVLLNYNQMEFGIVRLLA----IFVVGKFNT--TSFVQVSL   71 (219)
Q Consensus         9 l~~~~~~~--~~~l~gasgg---------~y~~~~ah~~~~~~n~~~m~~G~~rll~----iyll~~~~e--g~~~r~~l   71 (219)
                      |+....||  ++|+.|+|+-         +|++.=.||.||+++|-.+|.|..|+++    ...+|.++|  ++++|+.+
T Consensus        81 l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~Rigl  160 (316)
T KOG2289|consen   81 LGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGL  160 (316)
T ss_pred             hheeeeeeeccCCccCcCCCCccccCCceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEee
Confidence            45556666  3888888883         3445556999999999999999999999    567899999  78899977


Q ss_pred             HHHHHHHhhhhhhhhccCCccchhhhhhHHHHHHHHHHHHHHHhccchhhhH--HHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4504          72 ITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGI--VRLLAIFVVASADVGFAVYNRYAGEL  149 (219)
Q Consensus        72 i~~l~gvi~Gsl~~~~~~p~~~~vGASGaifGLlga~l~~~~~~~~~~~~~~--~r~~~l~~~~~~~~~~~i~~~~~~~~  149 (219)
                      +| +.|+++||+++.++||+.++||||||+|||+||+++++++||++++.+.  .+.+++++++.++++++         
T Consensus       161 IY-l~gg~aGSlls~l~d~~~~sVGASggvfaLlgA~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~---------  230 (316)
T KOG2289|consen  161 IY-LAGGVAGSLLSSLFDPNSISVGASGGVFALLGAHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFA---------  230 (316)
T ss_pred             eh-hhhhhhhHHHHHHhccCCceecccHHHHHHHHHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccc---------
Confidence            65 5566799999999999999999999999999999999999999997543  44445555556666655         


Q ss_pred             cCCCCCCCcchhhhhHHHHHHHHHHHHHh---------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy4504         150 AGAGSGYPVSYVAHLTGALAGLTIGLLVL---------------KNFEQKLREQLMWWIALGVYVACTIFAVIYNVTSPS  214 (219)
Q Consensus       150 ~~~~~~~~Vs~~AHlGG~i~G~llg~~~~---------------~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~n~~~~~  214 (219)
                            |.+++++|+||+++|+.++++..               +++.+++.+|.++|++..++.++.++++++|+|...
T Consensus       231 ------~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~~~~~~~~~~~q~~~w~~~~~~~v~~~~~~~~~if~~~  304 (316)
T KOG2289|consen  231 ------PYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIVLRVFSKRLPYQLLLWIVLLVYLVAGLFASLFNIFDGK  304 (316)
T ss_pred             ------cceeccccccccCCCcchhHHhhhccceeEEeccceeeeccccccccchHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence                  55666777777777777776653               345566778889999999999999999999999954


Q ss_pred             CC
Q psy4504         215 YN  216 (219)
Q Consensus       215 ~~  216 (219)
                      |+
T Consensus       305 ~~  306 (316)
T KOG2289|consen  305 YC  306 (316)
T ss_pred             cc
Confidence            43

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.87  E-value=2.3e-21  Score=171.72  Aligned_cols=172  Identities=18%  Similarity=0.251  Sum_probs=119.1

Q ss_pred             ccchHhhHHHHH--------HHHHHhhcccccccChhHHHH----HHHHhcccC---ccchhhhhHHHHHHHhhhhhhhh
Q psy4504          22 GASGGVYALLAA--------HLANVLLNYNQMEFGIVRLLA----IFVVGKFNT---TSFVQVSLITFFKDFLRGSLGTS   86 (219)
Q Consensus        22 gasgg~y~~~~a--------h~~~~~~n~~~m~~G~~rll~----iyll~~~~e---g~~~r~~li~~l~gvi~Gsl~~~   86 (219)
                      +++..++..+|+        +|.||+.++.++|.|..|+++    +|.++..+|   |+ +|+.++|+++|+ .||+.+.
T Consensus        80 ~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~-~r~~ilYl~sGi-~G~l~s~  157 (278)
T PTZ00101         80 TPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGI-VKIIILYFLTGI-YGNILSS  157 (278)
T ss_pred             CCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHH-HHHHHHH
Confidence            455444444443        799999999999999999988    688899999   55 898778877776 5589888


Q ss_pred             ccCCccchhhhhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhhHH
Q psy4504          87 VIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTG  166 (219)
Q Consensus        87 ~~~p~~~~vGASGaifGLlga~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHlGG  166 (219)
                      ...|...++|||||+||++|++++.++.+|++++.+.........+..+.+.  ++  + ..     .+|+||++||+||
T Consensus       158 ~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~~~~~~~~~i~~~li~~~--l~--~-~~-----~g~~Id~~aHlGG  227 (278)
T PTZ00101        158 SVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERVVFNIIFFSLISFF--YY--F-TF-----NGSNIDHVGHLGG  227 (278)
T ss_pred             HHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH--HH--H-hc-----CCCCccHHHHHHH
Confidence            8888888999999999999999988888888765443222211111111111  11  1 11     1489999999999


Q ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4504         167 ALAGLTIGLLVLKNFEQKLREQLMWWIALGVYVACTIFAVI  207 (219)
Q Consensus       167 ~i~G~llg~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~  207 (219)
                      +++|++++..+.++.+.  ..|..+|.....+.+++...+.
T Consensus       228 ~i~G~llg~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~i~  266 (278)
T PTZ00101        228 LLSGISMGILYNSQMEN--KPSWYDHMKMASYACLALLAIV  266 (278)
T ss_pred             HHHHHHHHHHHHhhhhh--cccHHHHHHHHHHHHHHHHHHH
Confidence            99999999887554432  2333445544445554444443

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.59  E-value=5.1e-15  Score=131.32  Aligned_cols=131  Identities=19%  Similarity=0.226  Sum_probs=88.0

Q ss_pred             HHHHHhhcccccccChhHHHH----HHHHhcccC---ccchhhhhHHHHHHHhhhhhhhhccCCccchhhhhhHHHHHHH
Q psy4504          34 HLANVLLNYNQMEFGIVRLLA----IFVVGKFNT---TSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLA  106 (219)
Q Consensus        34 h~~~~~~n~~~m~~G~~rll~----iyll~~~~e---g~~~r~~li~~l~gvi~Gsl~~~~~~p~~~~vGASGaifGLlg  106 (219)
                      ++.||+++..++|+|..|+++    ++.+++..|   |+ +|++.+|+++++++ |+.++.+.+ ...+|+||++||++|
T Consensus       133 ~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~-~~~l~l~l~s~i~~-~~~~~~~~~-~~~gGaSGvVygL~g  209 (276)
T PRK10907        133 FELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGS-GKLIVITLISALLS-GWVQSKFSG-PWFGGLSGVVYALMG  209 (276)
T ss_pred             CCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHH-HHHHHHHcc-chhhHHHHHHHHHHH
Confidence            578999999999999999999    788999999   66 78877777777654 677666644 357899999999999


Q ss_pred             HHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhhHHHHHHHHHHHHHhc
Q psy4504         107 AHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLK  179 (219)
Q Consensus       107 a~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHlGG~i~G~llg~~~~~  179 (219)
                      ... ..-.+.++......+.......  +.+.....+.+         +++|+++||+||+++|+++++.-.+
T Consensus       210 ~~~-~~~~~~p~~~~~lp~~~~~f~l--lwl~~g~~~~~---------g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        210 YVW-LRGERDPQSGIYLPRGLIAFAL--LWLVAGYFDLF---------GMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             HHH-HHhccccccchhhhHHHHHHHH--HHHHHHHHHcc---------CcccHHHHHHHHHHHHHHHHHHhhh
Confidence            753 1111111111112222222211  11222222211         4789999999999999999976543

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.59  E-value=4.1e-15  Score=127.19  Aligned_cols=138  Identities=21%  Similarity=0.333  Sum_probs=95.2

Q ss_pred             HHHHhhcccccccChhHHHH----HHHHhcccC---ccchhhhhHHHHHHHhhhhhhhhccCCc--cchhhhhhHHHHHH
Q psy4504          35 LANVLLNYNQMEFGIVRLLA----IFVVGKFNT---TSFVQVSLITFFKDFLRGSLGTSVIDSD--VYLVGASGGVYALL  105 (219)
Q Consensus        35 ~~~~~~n~~~m~~G~~rll~----iyll~~~~e---g~~~r~~li~~l~gvi~Gsl~~~~~~p~--~~~vGASGaifGLl  105 (219)
                      +.|++.++.++|.|+.|++.    ++.++...|   |+ .|+...|+.+|+++ ++.+..+.|.  ++++||||++||++
T Consensus        67 ~~w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~-~~f~~~yl~~gl~~-~~~~~~~~~~~~~~~~GASG~i~gll  144 (228)
T COG0705          67 QLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGT-LRFLLFYLLSGLLA-GLAQVLFGPKGGAPSLGASGAIFGLL  144 (228)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhch-hHHHHHHHHHHHHH-HHHHHHHcccccCcccchhHHHHHHH
Confidence            89999999999999999987    788898999   66 78888888888766 5666766664  48999999999999


Q ss_pred             HHHHHHHHHhccchhhh--HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhhHHHHHHHHHHHHHhcchhh
Q psy4504         106 AAHLANVLLNYNQMEFG--IVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQ  183 (219)
Q Consensus       106 ga~l~~~~~~~~~~~~~--~~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHlGG~i~G~llg~~~~~~~~~  183 (219)
                      +++.. ...+.+.....  ..+...+.+  ...+   +++.+....   +..++|+|+||++|+++|.+++..+.|+.++
T Consensus       145 ga~~~-~~~~~~~~~~~~~~~~~~~~~i--~~~~---~~~~~~~~~---~~~~~va~~aHl~G~i~G~l~~~~~~~~~~~  215 (228)
T COG0705         145 GAYFL-LFPFARILLLFLSLPRPALILI--LIWL---LYSLFSGAG---SFGPSVAWSAHLGGLIGGLLLAALLSRKLRK  215 (228)
T ss_pred             HHHHH-HccccchhhhhccCchhHHHHH--HHHH---HHHHHHHhc---CCchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99872 22222222111  222222222  1122   233333222   1124799999999999999999887665443

>KOG2290|consensus

Probab=99.48  E-value=1.1e-13  Score=128.42  Aligned_cols=162  Identities=17%  Similarity=0.230  Sum_probs=111.7

Q ss_pred             HHHHhhcccccccChhHHHHH----HHHhcccC--ccchhhhhHHHHHHHhhhhhhhhccCCccchhhhhhHHHHHHHHH
Q psy4504          35 LANVLLNYNQMEFGIVRLLAI----FVVGKFNT--TSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLAAH  108 (219)
Q Consensus        35 ~~~~~~n~~~m~~G~~rll~i----yll~~~~e--g~~~r~~li~~l~gvi~Gsl~~~~~~p~~~~vGASGaifGLlga~  108 (219)
                      +-+|+....++|.|..|++.=    +-+...+|  -.+.|++++|+++| +.||+++.++-|..+.||-||+.+|++++.
T Consensus       450 QfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SG-itGNLASAIFlpY~~eVgPa~sQ~Gila~l  528 (652)
T KOG2290|consen  450 QFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSG-ITGNLASAIFLPYRAEVGPAGSQFGILACL  528 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeeccc-ccccchheeeeccccccCCcccccchHHHH
Confidence            455666677899999999981    22233456  33578888777777 588999999999999999999999999999


Q ss_pred             HHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhhHHHHHHHHHHHHHhcchh--h--H
Q psy4504         109 LANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFE--Q--K  184 (219)
Q Consensus       109 l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHlGG~i~G~llg~~~~~~~~--~--~  184 (219)
                      +..+..+|+.+++++....=++. +.+-+       +.+.      -|-||++||+.|++.|++.++++++...  .  .
T Consensus       529 ~vEl~qs~~il~~~w~a~~~Lia-~~L~L-------~iGl------iPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~  594 (652)
T KOG2290|consen  529 FVELFQSWQILERPWRAFFHLIA-TLLVL-------CIGL------IPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDL  594 (652)
T ss_pred             HHHHHhhhHhhhhHHHHHHHHHH-HHHHH-------Hhcc------ccchhhHHHHHHHHHHHHHHHHhhccccccchhh
Confidence            99999999877666533322211 11101       1111      3999999999999999999999987433  2  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4504         185 LREQLMWWIALGVYVACTIFAVIYNVT  211 (219)
Q Consensus       185 ~~~~~~~~~a~~~~~~~~~~~i~~n~~  211 (219)
                      -++|..-.++.+++..++..++++.+.
T Consensus       595 yrKr~~ilIs~ivf~~Lla~Lvv~fy~  621 (652)
T KOG2290|consen  595 YRKRFYILISQIVFSGLLAILVVVFYN  621 (652)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHheee
Confidence            223444344455555555555555543

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.28  E-value=2.4e-13  Score=107.40  Aligned_cols=130  Identities=26%  Similarity=0.317  Sum_probs=84.4

Q ss_pred             HHHHHhhcccccccChhHHHH----HHHHhcccC---ccchhhhhHHHHHHHhhhhhhhhccCCcc-chhhhhhHHHHHH
Q psy4504          34 HLANVLLNYNQMEFGIVRLLA----IFVVGKFNT---TSFVQVSLITFFKDFLRGSLGTSVIDSDV-YLVGASGGVYALL  105 (219)
Q Consensus        34 h~~~~~~n~~~m~~G~~rll~----iyll~~~~e---g~~~r~~li~~l~gvi~Gsl~~~~~~p~~-~~vGASGaifGLl  105 (219)
                      ++.||+.++...|.+..|++.    ++.++...|   |+ +|+..+++..++ .+++......+.. +.+|+||+++|++
T Consensus         4 ~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~-~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    4 GQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGS-RRFLALYLLSGL-LGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             C-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccc-hHHHHHHHHHHH-hhhhccccccccccccCCCcccchHHH
Confidence            578999999999999999998    778888899   44 777666555554 5588887766655 8999999999999


Q ss_pred             HHHHHHHHHhccchhhhH--HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhhHHHHHHHHHHHHHhcc
Q psy4504         106 AAHLANVLLNYNQMEFGI--VRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKN  180 (219)
Q Consensus       106 ga~l~~~~~~~~~~~~~~--~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHlGG~i~G~llg~~~~~~  180 (219)
                      +++......++++...+.  .+.....+......+               ..|++|+.+|++|+++|.+++..+.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~hl~G~~~G~~~~~~~~~~  143 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLG---------------FIPNISFLGHLGGFLAGLLYGFLILRR  143 (145)
T ss_dssp             HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTS---------------SSSTTTHHHHHHHHHHHHHHHHHHCH-
T ss_pred             HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHH---------------HHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999865555544443211  001011010111000               138999999999999999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2289|consensus

Probab=99.11  E-value=2.3e-11  Score=109.58  Aligned_cols=49  Identities=43%  Similarity=0.588  Sum_probs=45.4

Q ss_pred             CccceeeccccccccCCccccccchHhhHHHHHHHHHHhhcccccccCh
Q psy4504           1 MSVWLRRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGI   49 (219)
Q Consensus         1 ~~~~~~g~l~~~~~~~~~~l~gasgg~y~~~~ah~~~~~~n~~~m~~G~   49 (219)
                      |.+++||||+++++||+.++||||||+|+++|||+++.++||++|.-..
T Consensus       163 l~gg~aGSlls~l~d~~~~sVGASggvfaLlgA~Ls~l~~Nw~~m~~~~  211 (316)
T KOG2289|consen  163 LAGGVAGSLLSSLFDPNSISVGASGGVFALLGAHLSNLLTNWTIMKNKF  211 (316)
T ss_pred             hhhhhhhHHHHHHhccCCceecccHHHHHHHHHHHHHHHhhHHHhcchH
Confidence            4578999999999999999999999999999999999999999998333

>PTZ00101 rhomboid-1 protease; Provisional

Probab=97.36  E-value=0.00086  Score=59.93  Aligned_cols=46  Identities=17%  Similarity=0.146  Sum_probs=40.2

Q ss_pred             cceeeccccccccCCccccccchHhhHHHHHHHHHHhhcccccccC
Q psy4504           3 VWLRRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFG   48 (219)
Q Consensus         3 ~~~~g~l~~~~~~~~~~l~gasgg~y~~~~ah~~~~~~n~~~m~~G   48 (219)
                      .++.|++.++.++|....+||||++|.++|++.+..+++|..+...
T Consensus       148 sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~~  193 (278)
T PTZ00101        148 TGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHR  193 (278)
T ss_pred             HHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhccH
Confidence            3567889999999988899999999999999999999999887543

>KOG2632|consensus

Probab=96.55  E-value=0.014  Score=51.47  Aligned_cols=131  Identities=19%  Similarity=0.287  Sum_probs=74.8

Q ss_pred             HHHHHHHhhcccccccChhHHHH----HHHHhcccC---ccchhhhhHHHHHHHhhhhhhh---h-cc-CCccc---hhh
Q psy4504          32 AAHLANVLLNYNQMEFGIVRLLA----IFVVGKFNT---TSFVQVSLITFFKDFLRGSLGT---S-VI-DSDVY---LVG   96 (219)
Q Consensus        32 ~ah~~~~~~n~~~m~~G~~rll~----iyll~~~~e---g~~~r~~li~~l~gvi~Gsl~~---~-~~-~p~~~---~vG   96 (219)
                      ---+.+|+.+|...|-+..|+++    +...+...|   |.-+|+.....+.++..|=+.-   + .. .+...   .+|
T Consensus        49 ~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G  128 (258)
T KOG2632|consen   49 INWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIG  128 (258)
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccccc
Confidence            33578889999999999999998    677788888   5457877777777776662221   1 11 23333   355


Q ss_pred             hhhHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhhHHHHHHHHHHH
Q psy4504          97 ASGGVYALLAAHLANVLLNYNQ-MEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGL  175 (219)
Q Consensus        97 ASGaifGLlga~l~~~~~~~~~-~~~~~~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHlGG~i~G~llg~  175 (219)
                      =||-.|+.++..-  .....+. ..+....+-+.......-+..   +..         .|+.|+.+|++|++.|...++
T Consensus       129 ~s~v~Fam~~~~~--~~sp~r~~~~fg~~siP~~l~Pw~lLi~~---~~l---------vp~aSFlghl~GllvG~ay~~  194 (258)
T KOG2632|consen  129 FSGVLFAMMAVLE--VQSPVRSRSVFGLFSIPIVLAPWALLIAT---QIL---------VPQASFLGHLCGLLVGYAYAF  194 (258)
T ss_pred             ccHHHHHHHHHHh--hcCcccchhhcccccccHHHHHHHHHHHH---HHH---------ccCchHHHHHHHHHHHHHHHH
Confidence            5666665555421  1111111 111111000111111111111   111         499999999999999999998


Q ss_pred             H
Q psy4504         176 L  176 (219)
Q Consensus       176 ~  176 (219)
                      -
T Consensus       195 ~  195 (258)
T KOG2632|consen  195 S  195 (258)
T ss_pred             H
Confidence            4

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=95.12  E-value=0.034  Score=47.37  Aligned_cols=94  Identities=21%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             ceeeccccccccCCc--cccccchHhhHHHHHHHHHHhhcccccccC--hhHHHHHHHHhcccCccchhhhhHHHHHHHh
Q psy4504           4 WLRRSLGTSVIDSDV--YLVGASGGVYALLAAHLANVLLNYNQMEFG--IVRLLAIFVVGKFNTTSFVQVSLITFFKDFL   79 (219)
Q Consensus         4 ~~~g~l~~~~~~~~~--~l~gasgg~y~~~~ah~~~~~~n~~~m~~G--~~rll~iyll~~~~eg~~~r~~li~~l~gvi   79 (219)
                      ++.++++...+.|..  +.+||||..|.++|+-....-.. ++.-..  ..+...+++..                 . +
T Consensus       115 gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~-~~~~~~~~~~~~~~~~i~~-----------------~-~  175 (228)
T COG0705         115 GLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFA-RILLLFLSLPRPALILILI-----------------W-L  175 (228)
T ss_pred             HHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHcccc-chhhhhccCchhHHHHHHH-----------------H-H
Confidence            344556666777775  89999999999999844322111 000000  12222222221                 1 2


Q ss_pred             hhhhhhhccCCccchhhhhhHHHHHHHHHHHHHHHhcc
Q psy4504          80 RGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYN  117 (219)
Q Consensus        80 ~Gsl~~~~~~p~~~~vGASGaifGLlga~l~~~~~~~~  117 (219)
                      ..++.....++. .+++.++.+.|+++..+......++
T Consensus       176 ~~~~~~~~~~~~-~~va~~aHl~G~i~G~l~~~~~~~~  212 (228)
T COG0705         176 LYSLFSGAGSFG-PSVAWSAHLGGLIGGLLLAALLSRK  212 (228)
T ss_pred             HHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            224444443333 6899999999999888755544443

>KOG2980|consensus

Probab=92.53  E-value=0.084  Score=47.67  Aligned_cols=81  Identities=25%  Similarity=0.247  Sum_probs=45.3

Q ss_pred             CccchhhhhhHHHHHHHHHHHHHHHhccch---hhhH--HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhh
Q psy4504          90 SDVYLVGASGGVYALLAAHLANVLLNYNQM---EFGI--VRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHL  164 (219)
Q Consensus        90 p~~~~vGASGaifGLlga~l~~~~~~~~~~---~~~~--~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHl  164 (219)
                      +..++.||||++|++.+... .++.+.+.+   ..+.  .....+-.++..++...+        .   +.-.-|+.||+
T Consensus       219 ~~gp~LGAsGav~ai~a~~~-~lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~--------l---~~~~~n~~Ah~  286 (310)
T KOG2980|consen  219 WAGPSLGASGAVYAILALDC-TLFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLI--------L---GWGFFNHAAHL  286 (310)
T ss_pred             ccccccccchHHHHHHHHHh-hcCcCcceeEEEeecccccchhHHHHHHHhhhccee--------e---ccccchhHhhh
Confidence            35678999999999998875 233322222   1111  111111111111111111        1   12456778999


Q ss_pred             HHHHHHHHHHHHHhcchh
Q psy4504         165 TGALAGLTIGLLVLKNFE  182 (219)
Q Consensus       165 GG~i~G~llg~~~~~~~~  182 (219)
                      +|-+.|...+....++.+
T Consensus       287 ~gsl~Gv~va~~~~~ri~  304 (310)
T KOG2980|consen  287 SGSLFGVVVATYLWARIR  304 (310)
T ss_pred             cchHHHHHHHHHHHHHHH
Confidence            999999999987755544

>KOG2290|consensus

Probab=89.87  E-value=1.3  Score=42.42  Aligned_cols=99  Identities=16%  Similarity=0.312  Sum_probs=67.0

Q ss_pred             cceeeccccccccCCccccccchHhhHHHHHHHHHHhhccccccc---ChhHHHH-HHHHhcccCccchhhhhHHHHHHH
Q psy4504           3 VWLRRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEF---GIVRLLA-IFVVGKFNTTSFVQVSLITFFKDF   78 (219)
Q Consensus         3 ~~~~g~l~~~~~~~~~~l~gasgg~y~~~~ah~~~~~~n~~~m~~---G~~rll~-iyll~~~~eg~~~r~~li~~l~gv   78 (219)
                      .++.|-|++.++=|-.+=|||||.-+-++++-......||+-++=   .+.|+++ +++++                   
T Consensus       497 SGitGNLASAIFlpY~~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~-------------------  557 (652)
T KOG2290|consen  497 SGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLC-------------------  557 (652)
T ss_pred             ccccccchheeeeccccccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH-------------------
Confidence            467899999999999999999999999999999999999987653   2333333 22232                   


Q ss_pred             hhhhhhhhccCCccchhhhhhHHHHHHHHHHHHHHHhccchhhhHHHH
Q psy4504          79 LRGSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEFGIVRL  126 (219)
Q Consensus        79 i~Gsl~~~~~~p~~~~vGASGaifGLlga~l~~~~~~~~~~~~~~~r~  126 (219)
                      + | +.-++.+    -+--+|-|+||+.+.+..=...+...+....|.
T Consensus       558 i-G-liPWiDN----~aHlfG~i~GLl~s~~~~PYi~Fg~~d~yrKr~  599 (652)
T KOG2290|consen  558 I-G-LIPWIDN----WAHLFGTIFGLLTSIIFLPYIDFGDFDLYRKRF  599 (652)
T ss_pred             h-c-cccchhh----HHHHHHHHHHHHHHHHhhccccccchhhhhhHH
Confidence            2 2 2222222    344578999999998644445555544333443

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.41  E-value=0.58  Score=36.31  Aligned_cols=44  Identities=34%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             ceeeccccccccCCc-cccccchHhhHHHHHHHHHHhhccccccc
Q psy4504           4 WLRRSLGTSVIDSDV-YLVGASGGVYALLAAHLANVLLNYNQMEF   47 (219)
Q Consensus         4 ~~~g~l~~~~~~~~~-~l~gasgg~y~~~~ah~~~~~~n~~~m~~   47 (219)
                      .+.|++.....+|.. +.+|+||++|++++++......++.++..
T Consensus        53 ~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~~~~~~~~~~~~~~~~~   97 (145)
T PF01694_consen   53 GLLGSLLSLLFSPPNQPYVGASGAVFGLLGAFLFLYPQNKKRLRF   97 (145)
T ss_dssp             HHHHHHHHHHHH-S-----SSHHHHHHHHHHHHHHHHCCCCCS--
T ss_pred             HHhhhhccccccccccccCCCcccchHHHHHHHHHHhhccchhhc
Confidence            356677888888887 99999999999999999999988877654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.64
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.64
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	85.59
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	81.33

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.64  E-value=2.8e-16  Score=129.53  Aligned_cols=132  Identities=18%  Similarity=0.163  Sum_probs=89.7

Q ss_pred             HHHHHHhhcccccccChhHHHH----HHHHhcccC---ccchhhhhHHHHHHHhhhhhhhhccCCccchhhhhhHHHHHH
Q psy4504          33 AHLANVLLNYNQMEFGIVRLLA----IFVVGKFNT---TSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALL  105 (219)
Q Consensus        33 ah~~~~~~n~~~m~~G~~rll~----iyll~~~~e---g~~~r~~li~~l~gvi~Gsl~~~~~~p~~~~vGASGaifGLl  105 (219)
                      .++.||+.++.++|.+..|++.    ++.++...|   |+ +|+..+|+.+++ .|++.+...+|+. ++||||++||++
T Consensus        42 ~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~-~~fl~~yl~~~i-~~~l~~~~~~~~~-~vGaSGai~gl~  118 (181)
T 2xov_A           42 KFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS-GKLIVITLISAL-LSGYVQQKFSGPW-FGGLSGVVYALM  118 (181)
T ss_dssp             TTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH-HHHHHHHHHHCSC-CCCSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHH-HHHHHHHHhcCCC-ceeHHHHHHHHH
Confidence            4689999999999999999998    788899999   55 788776666665 5678887776654 999999999999


Q ss_pred             HHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhhHHHHHHHHHHHHHhc
Q psy4504         106 AAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLK  179 (219)
Q Consensus       106 ga~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHlGG~i~G~llg~~~~~  179 (219)
                      ++.+..-.++.+. +.+..+......  .+.+.+.+   .. .     .+|+|||+||+||+++|++++..+.|
T Consensus       119 g~~~~~~~~~p~~-~~~l~~~~~~~~--~~~~~~~~---~~-~-----~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          119 GYVWLRGERDPQS-GIYLQRGLIIFA--LIWIVAGW---FD-L-----FGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             HHHHHHHHHCGGG-SCCCCHHHHHHH--HHHHHHHH---TT-S-----SCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCcCc-eeeeHHHHHHHH--HHHHHHHH---HH-h-----ccccchHHHHHHHHHHHHHHHHHHhc
Confidence            9875322222221 111111111111  11222222   21 1     14799999999999999999977543

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.64  E-value=4.6e-17  Score=135.89  Aligned_cols=137  Identities=16%  Similarity=0.239  Sum_probs=91.7

Q ss_pred             HHHHHHHhhcccccccChhHHHH----HHHHhcccC---ccchhhhhHHHHHHHhhhhhhhhccCCccchhhhhhHHHHH
Q psy4504          32 AAHLANVLLNYNQMEFGIVRLLA----IFVVGKFNT---TSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYAL  104 (219)
Q Consensus        32 ~ah~~~~~~n~~~m~~G~~rll~----iyll~~~~e---g~~~r~~li~~l~gvi~Gsl~~~~~~p~~~~vGASGaifGL  104 (219)
                      -.++.||+.++.++|.|..|++.    ++.++...|   |+ +|+..+|+.+++ .|++.+...+|+. ++||||++||+
T Consensus        46 ~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~-~~~l~~yl~~~~-~~~l~~~~~~~~~-~vGaSGai~gl  122 (196)
T 2nr9_A           46 QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS-VKLLMLYVVASA-ITGYVQNYVSGPA-FFGLSGVVYAV  122 (196)
T ss_dssp             GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH-HHHHHHHHHHCSC-CCCSHHHHHHH
T ss_pred             ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHH-HHHHHHHHhcCCC-eeeHHHHHHHH
Confidence            34689999999999999999998    788999999   55 788776666665 5678888776655 99999999999


Q ss_pred             HHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhhHHHHHHHHHHHHHhcchhh
Q psy4504         105 LAAHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLKNFEQ  183 (219)
Q Consensus       105 lga~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHlGG~i~G~llg~~~~~~~~~  183 (219)
                      +++++..-.++.+....+. +.... .  .+.+.+.+.   ...     .+++|||+||+||+++|++++..+.++.++
T Consensus       123 ~g~~~~~~~~~~~~~~~~~-~~~~~-~--~~~~~~~~~---~~~-----~~~~v~~~aHlgG~l~G~l~~~~~~~~~~~  189 (196)
T 2nr9_A          123 LGYVFIRDKLNHHLFDLPE-GFFTM-L--LVGIALGFI---SPL-----FGVEMGNAAHISGLIVGLIWGFIDSKLRKN  189 (196)
T ss_dssp             HHHHHHHHHSSTTSCCCCC-SSTTT-T--TTTTTHHHH---SCS-----SCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhcchH-HHHHH-H--HHHHHHHHH---Hhc-----cCCCccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9987532112211110010 01111 0  011111211   110     146999999999999999999887655443

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=85.59  E-value=0.43  Score=38.74  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=27.4

Q ss_pred             cceeeccccccccCCccccccchHhhHHHHHHHH
Q psy4504           3 VWLRRSLGTSVIDSDVYLVGASGGVYALLAAHLA   36 (219)
Q Consensus         3 ~~~~g~l~~~~~~~~~~l~gasgg~y~~~~ah~~   36 (219)
                      .+++|++++..++|+. .+||||.+|.++|+...
T Consensus        96 ~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~  128 (196)
T 2nr9_A           96 ASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFI  128 (196)
T ss_dssp             HHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHH
Confidence            3567888888888876 89999999999998754

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=81.33  E-value=1.8  Score=34.56  Aligned_cols=32  Identities=25%  Similarity=0.175  Sum_probs=26.5

Q ss_pred             ceeeccccccccCCccccccchHhhHHHHHHHH
Q psy4504           4 WLRRSLGTSVIDSDVYLVGASGGVYALLAAHLA   36 (219)
Q Consensus         4 ~~~g~l~~~~~~~~~~l~gasgg~y~~~~ah~~   36 (219)
                      +++|++.+..++|+. .+||||.+|.++++...
T Consensus        92 ~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~  123 (181)
T 2xov_A           92 ALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWL  123 (181)
T ss_dssp             HHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHH
Confidence            467788888888775 89999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.58
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.5
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	93.22

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.58  E-value=9e-17  Score=130.89  Aligned_cols=131  Identities=18%  Similarity=0.245  Sum_probs=89.3

Q ss_pred             HHHHHhhcccccccChhHHHH----HHHHhcccC---ccchhhhhHHHHHHHhhhhhhhhccCCccchhhhhhHHHHHHH
Q psy4504          34 HLANVLLNYNQMEFGIVRLLA----IFVVGKFNT---TSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLA  106 (219)
Q Consensus        34 h~~~~~~n~~~m~~G~~rll~----iyll~~~~e---g~~~r~~li~~l~gvi~Gsl~~~~~~p~~~~vGASGaifGLlg  106 (219)
                      .+.||+.++.++|.+..|++.    ++.++...|   |+ +|+..+|+++++ .|++.+...+++ ..+||||++||+++
T Consensus        45 ~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~-~~~~~~~~~~~~-~~~l~~~~~~~~-~~vGaSG~v~gl~~  121 (189)
T d2nr9a1          45 SEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS-VKLLMLYVVASA-ITGYVQNYVSGP-AFFGLSGVVYAVLG  121 (189)
T ss_dssp             GCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH-HHHHHHHHHHCS-CCCCSHHHHHHHHH
T ss_pred             CchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHH-HHHHHHHhcCCC-CcccchHHHHHHHH
Confidence            579999999999999999998    778888888   55 777676666665 446776665543 47999999999999


Q ss_pred             HHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhhHHHHHHHHHHHHHhc
Q psy4504         107 AHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLVLK  179 (219)
Q Consensus       107 a~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHlGG~i~G~llg~~~~~  179 (219)
                      +.......+++....+........+    .+.+.+   ....     ..+++||+||++|+++|++++++..|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~-----~~~~v~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         122 YVFIRDKLNHHLFDLPEGFFTMLLV----GIALGF---ISPL-----FGVEMGNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             HHHHHHHSSTTSCCCCCSSTTTTTT----TTTHHH---HSCS-----SCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHhccHHHHHHHHHH----HHHHHH---HHhc-----cCCChHHHHHHHHHHHHHHHHHHHHc
Confidence            8765444444433221111111111    111111   1111     25899999999999999999987643

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.8e-14  Score=115.88  Aligned_cols=129  Identities=19%  Similarity=0.195  Sum_probs=88.0

Q ss_pred             HHHHHhhcccccccChhHHHH----HHHHhcccC---ccchhhhhHHHHHHHhhhhhhhhccCCccchhhhhhHHHHHHH
Q psy4504          34 HLANVLLNYNQMEFGIVRLLA----IFVVGKFNT---TSFVQVSLITFFKDFLRGSLGTSVIDSDVYLVGASGGVYALLA  106 (219)
Q Consensus        34 h~~~~~~n~~~m~~G~~rll~----iyll~~~~e---g~~~r~~li~~l~gvi~Gsl~~~~~~p~~~~vGASGaifGLlg  106 (219)
                      ++.||+.++.++|.+..|++.    ++.++..+|   |+ +|+..+++++++ .|++.+...+++ ...|+||+++|+++
T Consensus        43 g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~-~~~~~~~~~~~~-~g~l~~~~~~~~-~~~G~sg~i~~l~~  119 (180)
T d3b45a1          43 FEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS-GKLIVITLISAL-LSGYVQQKFSGP-WFGGLSGVVYALMG  119 (180)
T ss_dssp             TCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH-HHHHHHHHHHCS-CCCCSHHHHHHHHH
T ss_pred             CchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccc-hhheeeeeHHHH-HHHHHHHHHhcc-ccccccchHHHHHH
Confidence            589999999999999999999    789999999   65 777666666665 557777776664 57899999999999


Q ss_pred             HHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCcchhhhhHHHHHHHHHHHHH
Q psy4504         107 AHLANVLLNYNQMEFGIVRLLAIFVVASADVGFAVYNRYAGELAGAGSGYPVSYVAHLTGALAGLTIGLLV  177 (219)
Q Consensus       107 a~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~Vs~~AHlGG~i~G~llg~~~  177 (219)
                      .......++..... ...+.........  .....   + ..     ..+++|+.||++|+++|++++++.
T Consensus       120 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~---~-~~-----~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         120 YVWLRGERDPQSGI-YLQRGLIIFALIW--IVAGW---F-DL-----FGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HHHHHHHHCGGGSC-CCCHHHHHHHHHH--HHHHH---T-TS-----SCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcchhHH-hhHHHHHHHHHHH--HHHHH---H-Hh-----ccCchHHHHHHHHHHHHHHHHHHH
Confidence            87633333322221 1111111111111  11111   1 11     258999999999999999999764

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=93.22  E-value=0.018  Score=44.63  Aligned_cols=43  Identities=21%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             ceeeccccccccCCccccccchHhhHHHHHHHHHHhhccccccc
Q psy4504           4 WLRRSLGTSVIDSDVYLVGASGGVYALLAAHLANVLLNYNQMEF   47 (219)
Q Consensus         4 ~~~g~l~~~~~~~~~~l~gasgg~y~~~~ah~~~~~~n~~~m~~   47 (219)
                      .+.|++..+..+|+ +.+|+||.+|+++++...+...+......
T Consensus        94 ~~~~~l~~~~~~~~-~~vGaSG~v~gl~~~~~~~~~~~~~~~~~  136 (189)
T d2nr9a1          94 SAITGYVQNYVSGP-AFFGLSGVVYAVLGYVFIRDKLNHHLFDL  136 (189)
T ss_dssp             HHHHHHHHHHHHCS-CCCCSHHHHHHHHHHHHHHHHSSTTSCCC
T ss_pred             HHHHHHHHHhcCCC-CcccchHHHHHHHHHHHHHHHHhhhHhcc
Confidence            34567777777775 57999999999999998888888766543