Psyllid ID: psy4541

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MLITKNVKSLLSRTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI
Secondary Structure (PSIPRED)
cccHHHHHHHHcccccHHHcccccccccHHHHHHHHccEEEEEEcccccccccccccccEEEEEEccccccccccEEEEEEEcccccccccccccccccccccccHHHHHHcccEEEEEEccHHHHHcHHcccccEEEEEEccccccccccEEEEEEEccccccccccccccccccEEccccccccEEccEEEEEEcccccccccccccccEEEEEEccccEEEcccEEEEEEEccEEEEEEEEEEEEcccccccccccEEEEEcccccccccEEEccccHHHHcccccccccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcEEEEEEccHHHccccccccccEEEEEEEccccEEEccEEEEEEcccccccccHHHHHHHHHHccccHHHHHHHHHcEEEEEEccccccccccccccccEEEEEEcccccEcccEEEEEEccccccccccHHHHHHHccccccHHHHHHHHHcEEEEEEcccccccccccccccEEEEEEccccEEEEccEEEEEEEccEEEEEEEEEcccccccccccccccEEEEEccccccccEEEcccHHHHHHHHHHHHHHccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLITKNVKSLLSRTPSALKLCsdlyhttpclhhiklltrlrvvdnceigrqamaegkpprVIAIYNQTHIGTIGDKVLVAIKgekkkgetpsalKLCSdlyhttpclhhiklltrlrvvdnceigrqamaegkpprVIAIYNQTHIGTIGDKVLVAIKgekkkgetpsalKLCSdlyhttpclhhiklltrlrvvdnceigrqamaegkpprVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVkkhqkphipktdtnnvvliddsgtplgtrihvpipsMLRTILKEktlskgadYTKLLAIATTFI
Flexible Loop (DISEMBL)
mlitknvkSLLSRTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRqamaegkpprVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRqamaegkpprVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRqamaegkpprVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVgvkkhqkphipktdtnnvvliDDSGtplgtrihvpipsMLRTILKektlskgadytkLLAIATTFI
Low Complexity Region (SEG)
MLITKNVKSLLSRTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLvaikgekkkgiivgvkkHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI
Disordered region (IsUnstruct)
***************SALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEK*****PSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEK*****PSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATT**
Disordered Region (DISOPRED)
*********LLSRTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIG******GKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVL*********************LYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI
Disordered Region (DISEMBL)
MLITKNVKSLLSRTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI
Disordered Region (DISPRO)
*LITKNVKSLLSRTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGE*P*ALK***DLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLITKNVKSLLSRTPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q9D1I6	145	39S ribosomal protein L14	yes	N/A	0.398	0.848	0.428	2e-25
Q7M0E7	145	39S ribosomal protein L14	yes	N/A	0.398	0.848	0.436	2e-25
Q7ZUH5	141	39S ribosomal protein L14	yes	N/A	0.398	0.872	0.458	8e-25
Q1JQ99	145	39S ribosomal protein L14	yes	N/A	0.398	0.848	0.436	9e-25
Q6P1L8	145	39S ribosomal protein L14	yes	N/A	0.398	0.848	0.428	2e-22
B3CT15	122	50S ribosomal protein L14	yes	N/A	0.326	0.827	0.301	0.0002

>sp|Q9D1I6|RM14_MOUSE 39S ribosomal protein L14, mitochondrial OS=Mus musculus GN=Mrpl14 PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 89/133 (66%), Gaps = 10/133 (7%)

Query: 177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 236
           + T+  L  ++ +TR+RVVDN  +G  +    +PPR I +YN++ +G +GD++L+AI+G+
Sbjct: 23  FSTSGSLSAVQKMTRVRVVDNSALG--STPYHRPPRCIHVYNKSGVGKVGDQILLAIRGQ 80

Query: 237 KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
           KKK +IVG +       PK D+NNVVLI+D+G P+GTRI +PIP+ LR         +  
Sbjct: 81  KKKALIVGHRMPGSRMTPKFDSNNVVLIEDNGNPVGTRIKIPIPTSLR--------RREG 132

Query: 297 DYTKLLAIATTFI 309
           +Y+K+LAIA  F+
Sbjct: 133 EYSKVLAIAQNFV 145

Mus musculus (taxid: 10090)

>sp|Q7M0E7|RM14_RAT 39S ribosomal protein L14, mitochondrial OS=Rattus norvegicus GN=Mrpl14 PE=1 SV=2

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 88/133 (66%), Gaps = 10/133 (7%)

Query: 177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 236
           + T+  L  I+ +TR+RVVDN  +G       +PPR I +YN++ +G +GD++L+AI+G+
Sbjct: 23  FSTSGSLSAIQKMTRVRVVDNSALGNTPYH--RPPRCIHVYNKSGVGKVGDQILLAIRGQ 80

Query: 237 KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
           KKK +IVG +       PK D+NNVVLI+D+G P+GTRI +PIP+ LR         +  
Sbjct: 81  KKKALIVGHRMPGSRMTPKFDSNNVVLIEDNGNPVGTRIKIPIPTSLR--------RREG 132

Query: 297 DYTKLLAIATTFI 309
           +Y+K+LAIA  F+
Sbjct: 133 EYSKVLAIAQNFV 145

Rattus norvegicus (taxid: 10116)

>sp|Q7ZUH5|RM14_DANRE 39S ribosomal protein L14, mitochondrial OS=Danio rerio GN=mrpl14 PE=2 SV=1

 Score =  114 bits (286), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 85/133 (63%), Gaps = 10/133 (7%)

Query: 177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 236
           +  +  +  I+ LTR+RVVDN  +G       +PP+VI +YN+  +G +GD+VL+AIKG+
Sbjct: 19  FSVSSAVSAIQKLTRVRVVDNSTLGNAH--HHRPPKVIHVYNKNGVGKVGDRVLLAIKGQ 76

Query: 237 KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
           KKK IIVG K       P+ D+NNVVLI+D+G P GTRI  P+P+ LR +  E       
Sbjct: 77  KKKAIIVGHKMPGARMTPRFDSNNVVLIEDNGNPTGTRIKAPLPTHLRKLEGE------- 129

Query: 297 DYTKLLAIATTFI 309
            Y+KLLAIA  F+
Sbjct: 130 -YSKLLAIAQRFV 141

Danio rerio (taxid: 7955)

>sp|Q1JQ99|RM14_BOVIN 39S ribosomal protein L14, mitochondrial OS=Bos taurus GN=MRPL14 PE=2 SV=1

 Score =  114 bits (285), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 86/133 (64%), Gaps = 10/133 (7%)

Query: 177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 236
           + TT  L  I+ +TR+RVVDN  +G       +PPR I +YN+  +G +GD++L+AIKG+
Sbjct: 23  FSTTGSLGAIQKMTRVRVVDNSALGNTPYH--RPPRCIHVYNKNGVGKVGDRILLAIKGQ 80

Query: 237 KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
           KKK +IVG +       P+ D+NNVVLI+D+G P+GTRI  PIP+ LR         +  
Sbjct: 81  KKKALIVGHRMPGPTMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLR--------QREG 132

Query: 297 DYTKLLAIATTFI 309
           +++K+LAIA  F+
Sbjct: 133 EFSKVLAIAQNFV 145

Bos taurus (taxid: 9913)

>sp|Q6P1L8|RM14_HUMAN 39S ribosomal protein L14, mitochondrial OS=Homo sapiens GN=MRPL14 PE=1 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 10/133 (7%)

Query: 177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 236
           + TT  L  I+ +TR+RVVDN  +G       + PR I +Y +  +G +GD++L+AIKG+
Sbjct: 23  FSTTGSLSAIQKMTRVRVVDNSALGNSPYH--RAPRCIHVYKKNGVGKVGDQILLAIKGQ 80

Query: 237 KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
           KKK +IVG         P+ D+NNVVLI+D+G P+GTRI  PIP+ LR         +  
Sbjct: 81  KKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLR--------KREG 132

Query: 297 DYTKLLAIATTFI 309
           +Y+K+LAIA  F+
Sbjct: 133 EYSKVLAIAQNFV 145

Homo sapiens (taxid: 9606)

>sp|B3CT15|RL14_ORITI 50S ribosomal protein L14 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplN PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 35/136 (25%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIK--------- 234
           I++ T L V DN        +  K    I +   TH  I  +GD ++V+IK         
Sbjct: 2   IQMQTILNVADN--------SGAKEVMCIKVLGGTHHMIAHLGDVIVVSIKSSIPKGKVK 53

Query: 235 -GEKKKGIIV----GVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKE 289
            GE  K +I+    GV +H   +I K D+N+VVL++  G P GTRI   +P  LR     
Sbjct: 54  KGEVCKALIIRTKCGVTRHDGSNI-KFDSNDVVLLNKQGEPFGTRIFGSVPRELRV---- 108

Query: 290 KTLSKGADYTKLLAIA 305
                  +++K++++A
Sbjct: 109 ------KNFSKIVSLA 118

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Orientia tsutsugamushi (strain Ikeda) (taxid: 334380)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
389610075	166	mitochondrial ribosomal protein L14 [Pap	0.430	0.801	0.706	7e-50
312375533	151	hypothetical protein AND_14049 [Anophele	0.420	0.860	0.704	2e-48
195477648	161	GE16952 [Drosophila yakuba] gi|194187791	0.433	0.832	0.669	1e-47
158287481	161	AGAP011146-PA [Anopheles gambiae str. PE	0.427	0.819	0.704	1e-47
242247599	142	39S ribosomal protein L14, mitochondrial	0.430	0.936	0.706	2e-47
158287477	160	AGAP011148-PA [Anopheles gambiae str. PE	0.427	0.825	0.704	2e-47
195447876	162	GK25783 [Drosophila willistoni] gi|19416	0.440	0.839	0.661	4e-47
194913216	161	GG12621 [Drosophila erecta] gi|190648324	0.440	0.844	0.669	5e-47
125983548	165	GA12726 [Drosophila pseudoobscura pseudo	0.417	0.781	0.669	7e-47
380017698	147	PREDICTED: 39S ribosomal protein L14, mi	0.443	0.931	0.702	8e-47

>gi|389610075|dbj|BAM18649.1| mitochondrial ribosomal protein L14 [Papilio xuthus]

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 119/133 (89%)

Query: 177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 236
           +HT+  L+ ++LLTRLRVVDN EIG++AMAEGKPP+VI +YN+  IG IGD+V+VAIKG+
Sbjct: 34  FHTSASLNEVQLLTRLRVVDNSEIGKRAMAEGKPPKVICVYNKKRIGYIGDRVMVAIKGQ 93

Query: 237 KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
           KKKGI+VG+K+ QK  +PK D+NN+VLIDD+GTPLGTRIHVPIP++LRTILKE+T +KGA
Sbjct: 94  KKKGILVGLKQTQKVKVPKFDSNNIVLIDDNGTPLGTRIHVPIPTILRTILKERTHAKGA 153

Query: 297 DYTKLLAIATTFI 309
           DYTKLLAIAT F+
Sbjct: 154 DYTKLLAIATKFV 166

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375533|gb|EFR22890.1| hypothetical protein AND_14049 [Anopheles darlingi]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 114/132 (86%)

Query: 178 HTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEK 237
           HTT     I+ + RLRVVDN EIG++AMAEG+PP+ I +YN+  +G IGDKVLVAIKG+K
Sbjct: 20  HTTAACSEIRKMARLRVVDNSEIGKRAMAEGRPPKCIHVYNKRGVGMIGDKVLVAIKGQK 79

Query: 238 KKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGAD 297
           KKGI+VG+++ QKP +PK DTNN+VLIDD+GTPLGTRIHVPIP+MLRTILKEKT +KGAD
Sbjct: 80  KKGILVGLRQFQKPKVPKFDTNNLVLIDDNGTPLGTRIHVPIPTMLRTILKEKTQAKGAD 139

Query: 298 YTKLLAIATTFI 309
           YTKLLAIA+ F+
Sbjct: 140 YTKLLAIASRFV 151

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195477648|ref|XP_002100267.1| GE16952 [Drosophila yakuba] gi|194187791|gb|EDX01375.1| GE16952 [Drosophila yakuba]

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 117/136 (86%)

Query: 174 SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI 233
            +L HTTP    I+ L RLRVVDN ++G++AMAEG+PPR I +YN+  +G IGDKVLVAI
Sbjct: 26  QELIHTTPACWEIRKLARLRVVDNSDLGKKAMAEGRPPRCIHVYNKRGVGLIGDKVLVAI 85

Query: 234 KGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLS 293
           KG+ KKGI+VG+K++QKP  PK D+NN+VLIDD+G+PLGTRIHVPIP++LRTILKEKTL+
Sbjct: 86  KGQMKKGILVGLKQNQKPKQPKFDSNNLVLIDDNGSPLGTRIHVPIPTILRTILKEKTLA 145

Query: 294 KGADYTKLLAIATTFI 309
           KGADYTK+LAIA+ ++
Sbjct: 146 KGADYTKVLAIASRYV 161

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287481|ref|XP_309502.3| AGAP011146-PA [Anopheles gambiae str. PEST] gi|157019671|gb|EAA05152.3| AGAP011146-PA [Anopheles gambiae str. PEST]

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 112/132 (84%)

Query: 178 HTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEK 237
           HTT     I+ + RLRVVDN EIG++AMAEGKPP+ I +YN+  +G IGDKVLVAIKG+K
Sbjct: 30  HTTAVCSEIRKMARLRVVDNSEIGKRAMAEGKPPKCIHVYNKQSVGMIGDKVLVAIKGQK 89

Query: 238 KKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGAD 297
           KKGI+VG K+ QKP IPK D+NN+VLIDD+GTPLGTRIHVPIP++LRTILKEKT +KGAD
Sbjct: 90  KKGILVGCKQFQKPKIPKFDSNNLVLIDDNGTPLGTRIHVPIPTILRTILKEKTQAKGAD 149

Query: 298 YTKLLAIATTFI 309
           YTKLL IA+ F+
Sbjct: 150 YTKLLGIASRFV 161

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247599|ref|NP_001156141.1| 39S ribosomal protein L14, mitochondrial-like [Acyrthosiphon pisum] gi|239788165|dbj|BAH70774.1| ACYPI003461 [Acyrthosiphon pisum]

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/133 (70%), Positives = 112/133 (84%)

Query: 177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE 236
           + T+   +HI  LTRLRVVDN  IG+QAMAEGKPPR I +YN+  IGTIGDK++VAIKGE
Sbjct: 10  FSTSAVSNHIMKLTRLRVVDNSTIGKQAMAEGKPPRCIHVYNKKGIGTIGDKIMVAIKGE 69

Query: 237 KKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
           K K IIVG  K QKP+IP+ D+NN+VLIDD+GTPLGTRI+VPIP +LRTILKEKT SKGA
Sbjct: 70  KVKAIIVGCVKEQKPNIPRFDSNNIVLIDDNGTPLGTRINVPIPIVLRTILKEKTFSKGA 129

Query: 297 DYTKLLAIATTFI 309
           DYTKLLAIA+ ++
Sbjct: 130 DYTKLLAIASNYV 142

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158287477|ref|XP_564374.3| AGAP011148-PA [Anopheles gambiae str. PEST] gi|157019669|gb|EAL41596.3| AGAP011148-PA [Anopheles gambiae str. PEST]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 112/132 (84%)

Query: 178 HTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEK 237
           HTT     I+ + RLRVVDN EIG++AMAEGKPP+ I +YN+  +G IGDKVLVAIKG+K
Sbjct: 29  HTTAVCSEIRKMARLRVVDNSEIGKRAMAEGKPPKCIHVYNKQSVGMIGDKVLVAIKGQK 88

Query: 238 KKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGAD 297
           KKGI+VG K+ QKP IPK D+NN+VLIDD+GTPLGTRIHVPIP++LRTILKEKT +KGAD
Sbjct: 89  KKGILVGCKQFQKPKIPKFDSNNLVLIDDNGTPLGTRIHVPIPTILRTILKEKTQAKGAD 148

Query: 298 YTKLLAIATTFI 309
           YTKLL IA+ F+
Sbjct: 149 YTKLLGIASRFV 160

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447876|ref|XP_002071410.1| GK25783 [Drosophila willistoni] gi|194167495|gb|EDW82396.1| GK25783 [Drosophila willistoni]

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/136 (66%), Positives = 116/136 (85%)

Query: 174 SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI 233
           + L+HT+P    I+ L RLRVVDN ++G++AMAEG+PPR I +YN+  +G IGDKVLVAI
Sbjct: 27  TQLFHTSPACMEIRKLARLRVVDNSDLGKRAMAEGRPPRCIHVYNKRGVGLIGDKVLVAI 86

Query: 234 KGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLS 293
           KG+ KKGI+VG+K++Q    PK D+NN+VLIDD+G+PLGTRIHVPIPS+LRTILKEKTL+
Sbjct: 87  KGQMKKGILVGLKQNQPSKQPKFDSNNLVLIDDNGSPLGTRIHVPIPSILRTILKEKTLA 146

Query: 294 KGADYTKLLAIATTFI 309
           KGADYTK+LAIA+ F+
Sbjct: 147 KGADYTKVLAIASRFV 162

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194913216|ref|XP_001982648.1| GG12621 [Drosophila erecta] gi|190648324|gb|EDV45617.1| GG12621 [Drosophila erecta]

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 117/136 (86%)

Query: 174 SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI 233
            +L HTTP    I+ L RLRVVDN ++G++AMAEG+PPR I +YN+  +G IGDKVLVAI
Sbjct: 26  QELIHTTPACCEIRKLARLRVVDNSDLGKKAMAEGRPPRCIHVYNKRGVGFIGDKVLVAI 85

Query: 234 KGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLS 293
           KG+ KKGI+VG+K++QKP  PK D+NN+VLIDD+G+PLGTRIHVPIP++LRTILKEKTL+
Sbjct: 86  KGQMKKGILVGLKQNQKPKQPKFDSNNLVLIDDNGSPLGTRIHVPIPTILRTILKEKTLA 145

Query: 294 KGADYTKLLAIATTFI 309
           KGADYTK+LAIA+ ++
Sbjct: 146 KGADYTKVLAIASRYV 161

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125983548|ref|XP_001355539.1| GA12726 [Drosophila pseudoobscura pseudoobscura] gi|54643855|gb|EAL32598.1| GA12726 [Drosophila pseudoobscura pseudoobscura]

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 116/136 (85%)

Query: 174 SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI 233
             L HTTP    I+ L RLRVVDN ++G++AMAEG+PPR I +YN+  +G IGDKVLVAI
Sbjct: 30  QQLLHTTPACCEIRKLARLRVVDNSDLGKRAMAEGRPPRCIHVYNKRGVGYIGDKVLVAI 89

Query: 234 KGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLS 293
           KG+ KKGI+VG+K++QKP  PK D+NN+VLIDD+G+PLGTRIHVPIP++LRTILKEKTL+
Sbjct: 90  KGQMKKGILVGLKQNQKPKQPKFDSNNLVLIDDNGSPLGTRIHVPIPTVLRTILKEKTLA 149

Query: 294 KGADYTKLLAIATTFI 309
           KGADYTK+LAIA+ ++
Sbjct: 150 KGADYTKVLAIASRYV 165

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017698|ref|XP_003692784.1| PREDICTED: 39S ribosomal protein L14, mitochondrial-like [Apis florea]

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 97/138 (70%), Positives = 115/138 (83%), Gaps = 1/138 (0%)

Query: 172 LCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLV 231
           L  ++  +T C   IKL TRLRVVDN EIG+QAM EGKPPR I +YN+  IG IGD+VLV
Sbjct: 11  LSRNVSTSTICNQIIKL-TRLRVVDNSEIGKQAMMEGKPPRCIHVYNKKGIGYIGDRVLV 69

Query: 232 AIKGEKKKGIIVGVKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKT 291
           AIKGEKKKGI+VG+K+ Q P +P+ D+NN+VLIDD+GTPLGTRIHVPIP +LRTI+KEKT
Sbjct: 70  AIKGEKKKGILVGLKQRQNPKVPRFDSNNIVLIDDNGTPLGTRIHVPIPHILRTIMKEKT 129

Query: 292 LSKGADYTKLLAIATTFI 309
            SKGADYTKLLAIAT F+
Sbjct: 130 HSKGADYTKLLAIATKFV 147

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
FB|FBgn0040389	161	mRpL14 "mitochondrial ribosoma	0.433	0.832	0.589	8.9e-38
RGD|1306240	145	Mrpl14 "mitochondrial ribosoma	0.398	0.848	0.375	1.2e-17
UNIPROTKB|F1RQV7	145	MRPL14 "Uncharacterized protei	0.398	0.848	0.368	1.6e-17
MGI|MGI:1333864	145	Mrpl14 "mitochondrial ribosoma	0.398	0.848	0.368	1.6e-17
UNIPROTKB|E1C7I2	146	MRPL14 "Uncharacterized protei	0.365	0.773	0.408	2.5e-17
UNIPROTKB|Q1JQ99	145	MRPL14 "39S ribosomal protein	0.398	0.848	0.360	5.3e-17
UNIPROTKB|J9NW30	145	MRPL14 "Uncharacterized protei	0.398	0.848	0.353	8.6e-17
ZFIN|ZDB-GENE-040426-1066	141	mrpl14 "mitochondrial ribosoma	0.368	0.808	0.395	1.1e-16
UNIPROTKB|Q6P1L8	145	MRPL14 "39S ribosomal protein	0.398	0.848	0.353	7.7e-16

FB|FBgn0040389 mRpL14 "mitochondrial ribosomal protein L14" [Drosophila melanogaster (taxid:7227)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 79/134 (58%), Positives = 100/134 (74%)

Query:   176 LYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXX 235
             L HTTP    I+ L RLRVVDN ++G++AMAEG+PPR I +YN+  +G IGDKVL     
Sbjct:    28 LIHTTPACCEIRKLARLRVVDNSDLGKKAMAEGRPPRCIHVYNKRGVGFIGDKVLVAIKG 87

Query:   236 XXXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKG 295
                         +QKP  PK D+NN+VLIDD+G+PLGTRIHVPIP++LRTILKEKTL+KG
Sbjct:    88 QMKKGILVGLKQNQKPKQPKFDSNNLVLIDDNGSPLGTRIHVPIPTILRTILKEKTLAKG 147

Query:   296 ADYTKLLAIATTFI 309
             ADYTK+LAIA+ ++
Sbjct:   148 ADYTKVLAIASRYV 161

GO:0006412 "translation" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

RGD|1306240 Mrpl14 "mitochondrial ribosomal protein L14" [Rattus norvegicus (taxid:10116)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 50/133 (37%), Positives = 75/133 (56%)

Query:   177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 236
             + T+  L  I+ +TR+RVVDN  +G       +PPR I +YN++ +G +GD++L      
Sbjct:    23 FSTSGSLSAIQKMTRVRVVDNSALGNTPYH--RPPRCIHVYNKSGVGKVGDQILLAIRGQ 80

Query:   237 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
                              PK D+NNVVLI+D+G P+GTRI +PIP+ LR   +E       
Sbjct:    81 KKKALIVGHRMPGSRMTPKFDSNNVVLIEDNGNPVGTRIKIPIPTSLRR--RE------G 132

Query:   297 DYTKLLAIATTFI 309
             +Y+K+LAIA  F+
Sbjct:   133 EYSKVLAIAQNFV 145

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1RQV7 MRPL14 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 49/133 (36%), Positives = 73/133 (54%)

Query:   177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 236
             + TT  L  I+ +TR+RVVDN  +G       +PPR I +YN+T +G +GD++L      
Sbjct:    23 FSTTGSLSAIQKMTRVRVVDNSALGTTPYH--RPPRCIHVYNKTGVGKVGDRILLAIRGQ 80

Query:   237 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
                              P+ D+NNVVL++D+G P+GTRI  PIPS LR         +  
Sbjct:    81 KKKALIVGHRMPGPRMTPRFDSNNVVLLEDNGNPVGTRIKTPIPSSLR--------QREG 132

Query:   297 DYTKLLAIATTFI 309
             +++K+LAIA  F+
Sbjct:   133 EFSKVLAIAQNFV 145

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1333864 Mrpl14 "mitochondrial ribosomal protein L14" [Mus musculus (taxid:10090)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 49/133 (36%), Positives = 76/133 (57%)

Query:   177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 236
             + T+  L  ++ +TR+RVVDN  +G  +    +PPR I +YN++ +G +GD++L      
Sbjct:    23 FSTSGSLSAVQKMTRVRVVDNSALG--STPYHRPPRCIHVYNKSGVGKVGDQILLAIRGQ 80

Query:   237 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
                              PK D+NNVVLI+D+G P+GTRI +PIP+ LR   +E       
Sbjct:    81 KKKALIVGHRMPGSRMTPKFDSNNVVLIEDNGNPVGTRIKIPIPTSLRR--RE------G 132

Query:   297 DYTKLLAIATTFI 309
             +Y+K+LAIA  F+
Sbjct:   133 EYSKVLAIAQNFV 145

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E1C7I2 MRPL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 51/125 (40%), Positives = 73/125 (58%)

Query:   186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXXXXXXXXXXX 245
             I+ LTR+RVVDN  +G       +PP+ I +YN+T +G +GDK+L               
Sbjct:    33 IQKLTRVRVVDNSALGNAPYH--RPPKCIHVYNKTGVGKVGDKILLAIKGEKKKALIVGH 90

Query:   246 XXHQKPHI-PKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAI 304
                  PH+ P+ D+NNVVLI+D+G PLGTRI  PIP +LR   +E       +++K+LAI
Sbjct:    91 KM-PGPHMTPRFDSNNVVLIEDNGNPLGTRIKTPIPYILRR--RE------GEFSKVLAI 141

Query:   305 ATTFI 309
             A  F+
Sbjct:   142 ARNFV 146

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q1JQ99 MRPL14 "39S ribosomal protein L14, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 48/133 (36%), Positives = 72/133 (54%)

Query:   177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 236
             + TT  L  I+ +TR+RVVDN  +G       +PPR I +YN+  +G +GD++L      
Sbjct:    23 FSTTGSLGAIQKMTRVRVVDNSALGNTPYH--RPPRCIHVYNKNGVGKVGDRILLAIKGQ 80

Query:   237 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
                              P+ D+NNVVLI+D+G P+GTRI  PIP+ LR         +  
Sbjct:    81 KKKALIVGHRMPGPTMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLR--------QREG 132

Query:   297 DYTKLLAIATTFI 309
             +++K+LAIA  F+
Sbjct:   133 EFSKVLAIAQNFV 145

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9NW30 MRPL14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 47/133 (35%), Positives = 72/133 (54%)

Query:   177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 236
             + TT     I+ +TR+RVVDN  +G       +PPR I +YN++ +G +GD++L      
Sbjct:    23 FSTTGSFSAIQKMTRVRVVDNSALGNTPYH--RPPRCIHVYNKSGVGKVGDRILLAIKGQ 80

Query:   237 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
                              P+ D+NNVVLI+D+G P+GTRI  PIP+ LR         +  
Sbjct:    81 KKKALIVGHRMPGPQMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLR--------QREG 132

Query:   297 DYTKLLAIATTFI 309
             +++K+LAIA  F+
Sbjct:   133 EFSKVLAIAQNFV 145

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-040426-1066 mrpl14 "mitochondrial ribosomal protein L14" [Danio rerio (taxid:7955)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 49/124 (39%), Positives = 70/124 (56%)

Query:   186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXXXXXXXXXXX 245
             I+ LTR+RVVDN  +G       +PP+VI +YN+  +G +GD+VL               
Sbjct:    28 IQKLTRVRVVDNSTLGNAH--HHRPPKVIHVYNKNGVGKVGDRVLLAIKGQKKKAIIVGH 85

Query:   246 XXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIA 305
                     P+ D+NNVVLI+D+G P GTRI  P+P+ LR +       +G +Y+KLLAIA
Sbjct:    86 KMPGARMTPRFDSNNVVLIEDNGNPTGTRIKAPLPTHLRKL-------EG-EYSKLLAIA 137

Query:   306 TTFI 309
               F+
Sbjct:   138 QRFV 141

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q6P1L8 MRPL14 "39S ribosomal protein L14, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 47/133 (35%), Positives = 70/133 (52%)

Query:   177 YHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLXXXXXX 236
             + TT  L  I+ +TR+RVVDN  +G       + PR I +Y +  +G +GD++L      
Sbjct:    23 FSTTGSLSAIQKMTRVRVVDNSALGNSPYH--RAPRCIHVYKKNGVGKVGDQILLAIKGQ 80

Query:   237 XXXXXXXXXXXHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGA 296
                              P+ D+NNVVLI+D+G P+GTRI  PIP+ LR         +  
Sbjct:    81 KKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLR--------KREG 132

Query:   297 DYTKLLAIATTFI 309
             +Y+K+LAIA  F+
Sbjct:   133 EYSKVLAIAQNFV 145

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	309
pfam00238	122	pfam00238, Ribosomal_L14, Ribosomal protein L14p/L	1e-16
PRK05483	122	PRK05483, rplN, 50S ribosomal protein L14; Validat	7e-08
TIGR01067	122	TIGR01067, rplN_bact, ribosomal protein L14, bacte	1e-06
COG0093	122	COG0093, RplN, Ribosomal protein L14 [Translation,	3e-06
CHL00057	122	CHL00057, rpl14, ribosomal protein L14	5e-06

>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e

 Score = 74.0 bits (183), Expect = 1e-16
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 33/139 (23%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI---------- 233
           I++ TRL V DN           K  + I +   +      +GD ++V++          
Sbjct: 2   IQVGTRLNVADNSGA--------KKVKCIKVLGGSRKKYAKVGDIIVVSVKKAIPKGKVK 53

Query: 234 KGEKKKGIIVGVKKHQK---PHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEK 290
           KG+  K +IV  KK  +       + D N VVLI++ G P GTRI  P+   LR    +K
Sbjct: 54  KGDVVKAVIVRTKKEVRRKDGSYIRFDDNAVVLINNKGEPKGTRIFGPVARELR---AKK 110

Query: 291 TLSKGADYTKLLAIATTFI 309
                  + K+L++A   +
Sbjct: 111 -------FPKILSLAPEVL 122

Length = 122

>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 25/115 (21%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIK-----GEKK 238
           I+  TRL V DN    ++ M        I +   +     +IGD ++V++K     G+ K
Sbjct: 2   IQQETRLNVADNSG-AKEVM-------CIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVK 53

Query: 239 KG-----IIVGVKKHQK----PHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLR 284
           KG     ++V  KK  +     +I + D N  VL+++ G P GTRI  P+   LR
Sbjct: 54  KGDVVKAVVVRTKKGVRRPDGSYI-RFDDNAAVLLNNDGEPRGTRIFGPVARELR 107

Length = 122

>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 35/136 (25%)

Query: 186 IKLLTRLRVVDNCEIGRQAM---AEGKPPRVIAIYNQTHIGTIGDKVLVAIK-----GEK 237
           I+  +RL V DN    ++       G   R  A        T+GD ++V +K     G+ 
Sbjct: 2   IQQQSRLNVADNSG-AKKVQCIKVLGGSRRRYA--------TVGDVIVVVVKDAIPNGKV 52

Query: 238 KKG-----IIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKE 289
           KKG     +IV  KK  +       + D N  VLI+ +  P GTRI  P+   LR     
Sbjct: 53  KKGDVVKAVIVRTKKGVRRKDGSYIRFDDNACVLINKNKEPRGTRIFGPVARELRD---- 108

Query: 290 KTLSKGADYTKLLAIA 305
                   + K++++A
Sbjct: 109 ------KGFMKIVSLA 118

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 122

>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 25/116 (21%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIK-----GEKK 238
           I++ TRL V DN    ++ M        I +   +      +GD ++V++K     G  K
Sbjct: 2   IQVQTRLNVADNSG-AKEVM-------CIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVK 53

Query: 239 KG-----IIVGVKKHQK----PHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRT 285
           KG     ++V  KK  +     +I K D N  V+I+  G P GTRI  P+   LR 
Sbjct: 54  KGDVVKAVVVRTKKEVRRPDGSYI-KFDDNAAVIINPDGEPRGTRIFGPVARELRE 108

Length = 122

>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 31/134 (23%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAI-----------K 234
           I+  T L V DN    R+ M      RV+   N+ +   IGD V++A+           +
Sbjct: 2   IQPQTYLNVADNSG-ARKLMC----IRVLGASNRKY-AHIGD-VIIAVVKEAVPNMPLKR 54

Query: 235 GEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKT 291
            E  + +IV   K  K     I + D N  V+ID  G P GTR+  PI   LR       
Sbjct: 55  SEVVRAVIVRTCKELKRDNGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARELR------- 107

Query: 292 LSKGADYTKLLAIA 305
                ++TK++++A
Sbjct: 108 ---EKNFTKIVSLA 118

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
COG0093	122	RplN Ribosomal protein L14 [Translation, ribosomal	100.0
CHL00057	122	rpl14 ribosomal protein L14	100.0
PRK05483	122	rplN 50S ribosomal protein L14; Validated	100.0
TIGR01067	122	rplN_bact ribosomal protein L14, bacterial/organel	100.0
PTZ00054	139	60S ribosomal protein L23; Provisional	100.0
PRK08571	132	rpl14p 50S ribosomal protein L14P; Reviewed	100.0
TIGR03673	131	rpl14p_arch 50S ribosomal protein L14P. Part of th	100.0
PF00238	122	Ribosomal_L14: Ribosomal protein L14p/L23e; InterP	100.0
PTZ00320	188	ribosomal protein L14; Provisional	100.0
KOG3441|consensus	149		99.97
KOG0901|consensus	145		99.96
KOG3441|consensus	149		99.94
CHL00057	122	rpl14 ribosomal protein L14	99.33
TIGR01067	122	rplN_bact ribosomal protein L14, bacterial/organel	99.3
PRK05483	122	rplN 50S ribosomal protein L14; Validated	99.29
PF00238	122	Ribosomal_L14: Ribosomal protein L14p/L23e; InterP	99.2
TIGR03673	131	rpl14p_arch 50S ribosomal protein L14P. Part of th	99.19
PRK08571	132	rpl14p 50S ribosomal protein L14P; Reviewed	99.14
PTZ00054	139	60S ribosomal protein L23; Provisional	99.03
COG0093	122	RplN Ribosomal protein L14 [Translation, ribosomal	98.85
PTZ00320	188	ribosomal protein L14; Provisional	98.69
KOG0901|consensus	145		97.76

>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.2e-40  Score=276.88  Aligned_cols=107  Identities=32%  Similarity=0.514  Sum_probs=102.3

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        |+++||+|++  ++++|++||+|++|||          |++++|||||||++++| 
T Consensus         1 miq~~t~l~vADNSGA--------k~v~~I~V~gg~~r~~A~vGD~ivvsVKka~P~~~vKkg~V~~AViVRtkk~~rR~   72 (122)
T COG0093           1 MIQVQTRLNVADNSGA--------KEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVKKGDVVKAVVVRTKKEVRRP   72 (122)
T ss_pred             CcccccEEEEccCCCC--------cEEEEEEEeccccccccCCCCEEEEEEeeccCCcceeccceEEEEEEEeCCceEcC
Confidence            8999999999999998        9999999999  4669999999999998          78999999999999977 


Q ss_pred             --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                        ++++|||||+||+|++|+|+||||||||++|+|++          +|+||+|||+.++
T Consensus        73 DGs~i~FddNA~Viin~~g~P~GtrI~GPVaRElr~~----------~~~kI~SlA~eVv  122 (122)
T COG0093          73 DGSYIKFDDNAAVIINPDGEPRGTRIFGPVARELRER----------GFMKIASLAPEVV  122 (122)
T ss_pred             CCCEEEeCCceEEEECCCCCcccceEecchhHHHHhc----------CCceeeecceecC
Confidence              59999999999999999999999999999999999          9999999999875

>CHL00057 rpl14 ribosomal protein L14

Probab=100.00  E-value=2.6e-39  Score=271.75  Aligned_cols=107  Identities=32%  Similarity=0.484  Sum_probs=101.7

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        +.++||++|+  ++++|++||+|++|||          ||+++|||||||++.+| 
T Consensus         1 MIq~~t~l~v~DNSGa--------k~v~cI~v~~~~~~~~a~vGD~IvvsVk~~~~~~k~kkg~v~kAvIVrtk~~~~r~   72 (122)
T CHL00057          1 MIQPQTYLNVADNSGA--------RKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRD   72 (122)
T ss_pred             CCCcCCEEEEeECCCC--------cEEEEEEEeCCCCCccccCCCEEEEEEEeccCCCceecCCEEEEEEEEeccccCcC
Confidence            8999999999999998        9999999998  4578999999999997          79999999999999976 


Q ss_pred             --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                        ++++|||||+||+|++++|+||||+||||+|||++          +|+||+|||+.++
T Consensus        73 dG~~i~F~~Na~VLin~~~~p~GTrI~Gpv~~elr~k----------~~~Ki~sla~~vi  122 (122)
T CHL00057         73 NGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARELREK----------NFTKIVSLAPEVL  122 (122)
T ss_pred             CCcEEEcCCceEEEECCCCCEeEeEEEccchHHHhhc----------CCeEEEecccccC
Confidence              59999999999999999999999999999999988          8999999999875

>PRK05483 rplN 50S ribosomal protein L14; Validated

Probab=100.00  E-value=3.3e-39  Score=270.96  Aligned_cols=107  Identities=32%  Similarity=0.525  Sum_probs=101.6

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        +.++||++|+  ++++|++||+|+||||          |++++|||||||++++| 
T Consensus         1 MIq~~t~l~v~DNSGa--------k~v~cI~v~g~~~~~~a~iGD~I~vsVkk~~~~~~~kkg~v~~AvIVrtkk~~~r~   72 (122)
T PRK05483          1 MIQQETRLNVADNSGA--------KEVMCIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVKKGDVVKAVVVRTKKGVRRP   72 (122)
T ss_pred             CCCCCCEEEEeECCCC--------CEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCcccCCCEeeEEEEEeccceecC
Confidence            8999999999999998        9999999998  4578999999999998          89999999999999866 


Q ss_pred             --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                        ++++|||||+||+|++++|+||||+||||+|||++          +|+||+|||+.++
T Consensus        73 dG~~i~F~dNavVLin~~~~p~GTrI~Gpv~~elr~~----------~~~Ki~sla~~v~  122 (122)
T PRK05483         73 DGSYIRFDDNAAVLLNNDGEPRGTRIFGPVARELRDK----------KFMKIVSLAPEVL  122 (122)
T ss_pred             CCCEEEcCCCEEEEECCCCCEeEeEEeccchHHHhhc----------CCcEEEecccccC
Confidence              59999999999999999999999999999999977          7999999999875

>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle

Probab=100.00  E-value=4.4e-39  Score=270.04  Aligned_cols=107  Identities=33%  Similarity=0.513  Sum_probs=101.7

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        +.++||++|+  ++++|++||+|+||||          ||+++|||||||++++| 
T Consensus         1 MIq~~t~l~v~DNSGa--------k~v~cI~v~~~~~~~~a~iGD~I~vsVk~~~~~~~~kkg~v~~AvIVrtkk~~~r~   72 (122)
T TIGR01067         1 MIQQQSRLNVADNSGA--------KKVQCIKVLGGSRRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAVIVRTKKGVRRK   72 (122)
T ss_pred             CCCcCCEEEEeECCCC--------cEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCccccccEEEEEEEEeecceEeC
Confidence            8999999999999998        9999999997  4578999999999998          89999999999999866 


Q ss_pred             --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                        ++++|||||+||+|++++|+||||+||||+|||++          +|+||+|||+.++
T Consensus        73 dG~~i~F~~Na~VLin~~~~p~GTrI~Gpv~~elr~~----------~~~Ki~sla~~i~  122 (122)
T TIGR01067        73 DGSYIRFDDNACVLINKNKEPRGTRIFGPVARELRDK----------GFMKIVSLAPEVI  122 (122)
T ss_pred             CCCEEECCCceEEEECCCCCEeeeEEEccchHHHhhc----------CCceeeeccchhC
Confidence              59999999999999999999999999999999988          8999999999875

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.

>PTZ00054 60S ribosomal protein L23; Provisional

Probab=100.00  E-value=1.1e-38  Score=273.43  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=102.7

Q ss_pred             cceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcC----CC--ceeeeCCEEEEEEc-------CeeeeEE
Q psy4541         175 DLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIK-------GEKKKGI  241 (309)
Q Consensus       175 ~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~----k~--r~A~VGD~IvVSVK-------GeV~kAV  241 (309)
                      -+++++   .|||.+|+|+|+|||||        +.++||+|++    ++  ++|++||+|+||||       |++++||
T Consensus        11 ~~~~~~---~mIq~~t~L~vaDNSGA--------k~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVKk~~p~~kg~V~kAV   79 (139)
T PTZ00054         11 NKFRVT---LGLPVGAVVNCADNSGA--------KNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKKVLNAV   79 (139)
T ss_pred             cccccc---eeecCCCEEEEeeCCCc--------cEEEEEEEeccCcCCccCcccccCCEEEEEEEECCCcccCCEeeEE
Confidence            345555   69999999999999998        9999999996    23  47999999999998       8999999


Q ss_pred             EEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         242 IVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       242 IVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                      |||||++++|   ++++|||||+||+|++++|+|||||||||+||++           +|+||+|||+.++
T Consensus        80 IVRtKk~~rR~dGs~i~F~dNA~VLin~~~~p~GTRI~GpV~rEl~~-----------~~~KI~SLA~~vi  139 (139)
T PTZ00054         80 IIRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKECAD-----------LWPKISSAAPAIV  139 (139)
T ss_pred             EEEECcceEcCCCcEEEeCCcEEEEECCCCCEeeeEEeCchhHHHHh-----------CccHhhccccccC
Confidence            9999999966   5999999999999999999999999999999944           5999999999875

>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed

Probab=100.00  E-value=1.3e-38  Score=270.88  Aligned_cols=113  Identities=24%  Similarity=0.366  Sum_probs=102.6

Q ss_pred             cceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcC----CC--ceeeeCCEEEEEEc-------CeeeeEE
Q psy4541         175 DLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIK-------GEKKKGI  241 (309)
Q Consensus       175 ~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~----k~--r~A~VGD~IvVSVK-------GeV~kAV  241 (309)
                      -+|+++   .|||.+|+|+|+|||||        +.++||+|++    ++  ++|++||+|+||||       ||+++||
T Consensus         4 ~~~~~~---~mIq~~T~L~VaDNSGA--------k~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVK~~~p~~kg~v~kAV   72 (132)
T PRK08571          4 IRSKVT---RGLPVGARLVCADNTGA--------KEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTPEMRKQVLRAV   72 (132)
T ss_pred             cccccc---ceecCCCEEEEeeCCCC--------CeEEEEEEeccCCCCccCCccccCCEEEEEEEECCCcccCCEeEEE
Confidence            345665   69999999999999998        9999999986    23  46999999999998       7999999


Q ss_pred             EEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         242 IVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       242 IVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                      |||||++++|   ++++|||||+||+|++++|+||||+||||+||++           +|+||+|||+.++
T Consensus        73 IVRtkk~~~R~dGs~i~F~dNa~VLin~~~~p~GTRI~GpV~~El~~-----------~~~Ki~sLA~~vi  132 (132)
T PRK08571         73 VVRQRKEYRRPDGTRVKFEDNAAVIVTPEGTPKGTEIKGPVAREAAE-----------RWPKIASIASIIV  132 (132)
T ss_pred             EEEeccceEcCCCcEEEeCCcEEEEECCCCCEeeeEEeccchHHHhh-----------CCchheeccchhC
Confidence            9999999976   5999999999999999999999999999999954           5999999999875

>TIGR03673 rpl14p_arch 50S ribosomal protein L14P

Probab=100.00  E-value=1.3e-38  Score=270.54  Aligned_cols=108  Identities=25%  Similarity=0.374  Sum_probs=99.8

Q ss_pred             cccccccCeEEEeeCCccccccccCCCCeEEEEEcC-----CC-ceeeeCCEEEEEEc-------CeeeeEEEEeeeecc
Q psy4541         183 LHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-----QT-HIGTIGDKVLVAIK-------GEKKKGIIVGVKKHQ  249 (309)
Q Consensus       183 ~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~-----k~-r~A~VGD~IvVSVK-------GeV~kAVIVRtKk~~  249 (309)
                      +.|||.+|+|+|+|||||        +.++||+|++     ++ ++|++||+|+||||       ||+++|||||||++.
T Consensus         8 ~~mIq~~t~L~VaDNSGa--------k~v~cI~vl~~~g~~~r~~~a~iGD~IvvsVK~~~p~~kg~v~kAVIVRtkk~~   79 (131)
T TIGR03673         8 TRALPVGSLLVCADNTGA--------KEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTPEMRKQVFKAVVVRQRKEY   79 (131)
T ss_pred             ceeeccCCEEEEeeCCCC--------ceEEEEEEeeeCCCcccCCccccCCEEEEEEEECCccccCCEeEEEEEEeCcce
Confidence            369999999999999998        9999999993     23 57999999999998       899999999999999


Q ss_pred             CC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         250 KP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       250 ~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                      +|   ++++|||||+||+|++++|+|||||||||+||+ +          +|+||+|||+.++
T Consensus        80 ~R~dGs~i~FddNa~VLin~~~~P~GTRI~GpV~rEl~-~----------~~~Ki~SlA~~vi  131 (131)
T TIGR03673        80 RRPDGTRVKFEDNAVVIVTPDGEPKGTEIKGPVAREAA-E----------RWPKIASIASIIV  131 (131)
T ss_pred             ecCCCcEEEeCCcEEEEECCCCCEeeeEEEccchHHHH-h----------CccHheeccchhC
Confidence            76   599999999999999999999999999999994 4          5999999999875

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.

>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.5e-38  Score=262.50  Aligned_cols=107  Identities=36%  Similarity=0.582  Sum_probs=99.2

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        +.++||++|+  ++++|++||+|++|||          |++++|||||||++++| 
T Consensus         1 MIq~~t~L~v~DNSGa--------k~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~avIVrtk~~~~r~   72 (122)
T PF00238_consen    1 MIQKGTILKVADNSGA--------KKVKCIKVLGGKRRKYASVGDIIVVSVKKGRPKSKVKKGQVYKAVIVRTKKPIRRK   72 (122)
T ss_dssp             -BETTEEEEESBSSSE--------EEEEEEEETSSTTTSEE-TTSEEEEEEEEE-SSSSSTTTEEEEEEEEECSSEEETT
T ss_pred             CCCCCCEEEEeeCCCC--------cEEEEEEEeCCcCccccccceEEEEEEeecccCccccccceEEEEEEEEeEEEEEe
Confidence            9999999999999998        9999999997  4679999999999994          89999999999999755 


Q ss_pred             --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                        .+++|||||+||+|++++|+||||+||||+|+|++          +|+||+|||+.||
T Consensus        73 dg~~i~F~~Na~VLln~~~~p~GtrI~Gpv~~elr~~----------~~~ki~sla~~iv  122 (122)
T PF00238_consen   73 DGSFIKFDDNAVVLLNKKGNPLGTRIFGPVPRELRKK----------KFPKILSLASRIV  122 (122)
T ss_dssp             TSEEEEESSEEEEEEETTSSBSSSSBCSEEEHHHHHT----------TSHHHHHHSSCEE
T ss_pred             CCcEEEeCCccEEEEcCCCCEeeeEEEeeehHHhhHc----------CCchHHhhccccC
Confidence              59999999999999999999999999999999988          8999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In eubacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins, which have been grouped on the basis of sequence similarities []. Based on amino-acid sequence homology, it is predicted that ribosomal protein L14 is a member of a recently identified family of structurally related RNA-binding proteins []. L14 is a protein of 119 to 137 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_M 4A1C_J 4A1E_J 4A1A_J 4A17_J 1VSP_I 3D5D_O 1VSA_I 3MRZ_K 3F1F_O ....

>PTZ00320 ribosomal protein L14; Provisional

Probab=100.00  E-value=6e-35  Score=259.54  Aligned_cols=105  Identities=20%  Similarity=0.226  Sum_probs=99.6

Q ss_pred             cccCeEEEeeCCccccccccCCCCeEEEEEcCCCceeeeCCE----EEEEEc----------------CeeeeEEEEeee
Q psy4541         187 KLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDK----VLVAIK----------------GEKKKGIIVGVK  246 (309)
Q Consensus       187 q~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~k~r~A~VGD~----IvVSVK----------------GeV~kAVIVRtK  246 (309)
                      .-+|+|+|+|||||        |.++||+|+.++++|++||+    |+||||                |++++|||||||
T Consensus        61 ~~qT~L~VaDNSGA--------K~V~CIkVl~~rr~A~IGDi~~~~IvVsVKka~P~~~~~~~~kVKKG~V~kAVIVRTK  132 (188)
T PTZ00320         61 SDQVKLHCVDNTNC--------KHVRLISKATAERFAHCRVFPAVAHRVSVQRFKSGRGEVSRHRVKPGNIYWVCLLSRR  132 (188)
T ss_pred             CCCcEEEEEeCCCC--------cEEEEEEEecCCCceeeccccCceEEEEEeecccCccccccCceecCCEEEEEEEEEC
Confidence            45799999999998        99999999987899999999    999997                799999999999


Q ss_pred             eccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         247 KHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       247 k~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                      ++.+|   ++++|||||+||+|++++|+||||||||++|||++          +|+||+|||+-|+
T Consensus       133 K~irR~DGs~IrFDdNAaVLIN~qgePlGTRIfGPVaRELR~k----------~f~KIvSLAp~~~  188 (188)
T PTZ00320        133 QTNTRMSGLQTNFDRNTCILMNDQRVPLGTRVMYCAGRHVNHK----------YHLKAVVLANFFV  188 (188)
T ss_pred             cccCCCCCCEEEeCCcEEEEECCCCCEeeeEEecchhHHHhhc----------CCceeeecccccC
Confidence            99977   59999999999999999999999999999999999          9999999999875

>KOG3441|consensus

Probab=99.97  E-value=5e-31  Score=224.55  Aligned_cols=129  Identities=49%  Similarity=0.787  Sum_probs=122.9

Q ss_pred             cceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcCCCceeeeCCEEEEEEcCeeeeEEEEeeeeccCCCce
Q psy4541         175 DLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGIIVGVKKHQKPHIP  254 (309)
Q Consensus       175 ~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~k~r~A~VGD~IvVSVKGeV~kAVIVRtKk~~~R~~I  254 (309)
                      .-+++++++..|++.|+|+|+|||..|++|+..++.++||+||+++..+.+||.|+++||||+.+|+||......++..+
T Consensus        21 ~~lhtt~s~~~I~k~tRlrVVDNSaLGk~a~~~gr~PrCIHVYkkrgvg~~GDkiLvAIkGQmkKa~vVGh~~~~k~~~P  100 (149)
T KOG3441|consen   21 HCLHTTGSLMGIHKRTRLRVVDNSALGKEADTTGRLPRCIHVYKKRGVGELGDKILVAIKGQMKKAYVVGHVHYRKHGVP  100 (149)
T ss_pred             hHhhcchHHHhhhhhheEEEecchhhcccccccCCCCceEEEEecccccccccEEEEEEecceeeeEEEEeeccCCCCCc
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         255 KTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       255 kFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                      +||.|++||+|++|+|+||||.-|||..||..      +.+++|+|+++||+.||
T Consensus       101 ~fDsNniVLiddnGnPlGtRI~~PIPT~Lr~~------~~~~~ysKVLAiA~~fv  149 (149)
T KOG3441|consen  101 VFDSNNIVLIDDNGNPLGTRITAPIPTKLRAN------RGNVQYSKVLAIANKFV  149 (149)
T ss_pred             ccCCCcEEEECCCCCcccceEeccCcHHHHhc------cCCcchhhHHHHHhhcC
Confidence            99999999999999999999999999999865      67999999999999986

>KOG0901|consensus

Probab=99.96  E-value=2.3e-29  Score=217.25  Aligned_cols=124  Identities=21%  Similarity=0.344  Sum_probs=114.3

Q ss_pred             ccccCCCCccccccccceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcC-CC-----ceeeeCCEEEEEE
Q psy4541         160 EKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-QT-----HIGTIGDKVLVAI  233 (309)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~-k~-----r~A~VGD~IvVSV  233 (309)
                      |++++++++.+    .+||.|   .|||.||.+||+|||||        |+++||+|.+ ++     ..|++||+|+++|
T Consensus         1 ~~~~~~~gs~~----~k~r~s---~~~~~g~~incaDNSgA--------knL~~isv~g~~Grlnrl~~A~~GD~vva~v   65 (145)
T KOG0901|consen    1 MSSRGRGGSSG----VKFRIS---LGLPVGAVINCADNSGA--------KNLYCISVKGIKGRLNRLPAAGVGDMVVATV   65 (145)
T ss_pred             CcccccCcccc----hhhhhh---hccccceEEEecCCCCc--------ceEEEEEEeccccccccccCCCcCCEEEEEE
Confidence            56788999988    899998   89999999999999998        9999999999 33     2799999999999


Q ss_pred             c------------CeeeeEEEEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCc
Q psy4541         234 K------------GEKKKGIIVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADY  298 (309)
Q Consensus       234 K------------GeV~kAVIVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~  298 (309)
                      |            |+++.|+|||++++.+|   ++++|+|||+|++|++++|+||+|+||||+|++..           |
T Consensus        66 Kka~~~Pe~r~k~g~~~~avvVr~~k~~~r~dgs~~~f~dnA~v~~~~~~e~~gs~i~G~v~~e~~~~-----------~  134 (145)
T KOG0901|consen   66 KKAHGKPELRKKVGEVLPAVVVRQKKSKRRKDGSIAYFEDNAGVIVNNKGEPKGSAITGPVGKELADL-----------W  134 (145)
T ss_pred             ecccCCCccCcEecccceeeEEeeccccccCCCcEEEEcCceEEEEcccCccccceeccccChhHhhh-----------h
Confidence            8            57799999999999866   59999999999999999999999999999999998           9


Q ss_pred             hheeccccCCC
Q psy4541         299 TKLLAIATTFI  309 (309)
Q Consensus       299 ~KIlSLA~~~I  309 (309)
                      +||+|+|+.++
T Consensus       135 ~kias~A~~i~  145 (145)
T KOG0901|consen  135 PKIASLAGLVV  145 (145)
T ss_pred             HHHHhhccccC
Confidence            99999998763

>KOG3441|consensus

Probab=99.94  E-value=3.2e-28  Score=207.42  Aligned_cols=99  Identities=35%  Similarity=0.507  Sum_probs=86.2

Q ss_pred             hHHHhhcccccccccc-ccccccccchHHHhhcceEEEEeCCcccccccccCCCceeEEEeccCCceeeCcEEEEEEcCc
Q psy4541           6 NVKSLLSRTPSALKLC-SDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGE   84 (309)
Q Consensus         6 ~~~~l~~~~~~~~~~~-~~~~~~~~~~~mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~~~g~vGD~IlvaIk~~   84 (309)
                      .+..|.+|+.--..-+ +..+|||++|..|+++|||||||||+|||+||.+|++|+|||||+++++|++||+||||||||
T Consensus         3 ~~~~l~~p~t~~~~~~s~~~lhtt~s~~~I~k~tRlrVVDNSaLGk~a~~~gr~PrCIHVYkkrgvg~~GDkiLvAIkGQ   82 (149)
T KOG3441|consen    3 FFTGLWGPFTCVSRVLSHHCLHTTGSLMGIHKRTRLRVVDNSALGKEADTTGRLPRCIHVYKKRGVGELGDKILVAIKGQ   82 (149)
T ss_pred             chhhcccceeeehhhhhhhHhhcchHHHhhhhhheEEEecchhhcccccccCCCCceEEEEecccccccccEEEEEEecc
Confidence            4567777776655433 445899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeccccccccccccccCcch
Q psy4541          85 KKKGETPSALKLCSDLYHTTPCL  107 (309)
Q Consensus        85 k~k~~~~~~~~~~~~~~~~~~~~  107 (309)
                      ++|||+||   +|..--|.+|-.
T Consensus        83 mkKa~vVG---h~~~~k~~~P~f  102 (149)
T KOG3441|consen   83 MKKAYVVG---HVHYRKHGVPVF  102 (149)
T ss_pred             eeeeEEEE---eeccCCCCCccc
Confidence            99999999   566666666644

>CHL00057 rpl14 ribosomal protein L14

Probab=99.33  E-value=1e-12  Score=111.20  Aligned_cols=46  Identities=24%  Similarity=0.332  Sum_probs=43.0

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKK   86 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~   86 (309)
                      |||.+|+|+|+||||        |+.++|||||+  ++.+|.+||.|+|+||+.++
T Consensus         1 MIq~~t~l~v~DNSG--------ak~v~cI~v~~~~~~~~a~vGD~IvvsVk~~~~   48 (122)
T CHL00057          1 MIQPQTYLNVADNSG--------ARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVP   48 (122)
T ss_pred             CCCcCCEEEEeECCC--------CcEEEEEEEeCCCCCccccCCCEEEEEEEeccC
Confidence            899999999999999        99999999997  45789999999999998776

>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle

Probab=99.30  E-value=1.8e-12  Score=109.46  Aligned_cols=46  Identities=28%  Similarity=0.448  Sum_probs=42.6

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKK   86 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~   86 (309)
                      |||.+|+|+|+||||        ++.++||+||+  ++++|.+||.|+|+||+.++
T Consensus         1 MIq~~t~l~v~DNSG--------ak~v~cI~v~~~~~~~~a~iGD~I~vsVk~~~~   48 (122)
T TIGR01067         1 MIQQQSRLNVADNSG--------AKKVQCIKVLGGSRRRYATVGDVIVVVVKDAIP   48 (122)
T ss_pred             CCCcCCEEEEeECCC--------CcEEEEEEEeCCCCCCccccCCEEEEEEEEcCC
Confidence            899999999999999        99999999996  44789999999999997776

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.

>PRK05483 rplN 50S ribosomal protein L14; Validated

Probab=99.29  E-value=2e-12  Score=109.26  Aligned_cols=46  Identities=30%  Similarity=0.424  Sum_probs=42.9

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKK   86 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~   86 (309)
                      |||.+|.|+|+||||        ++.++||+||+  +++.|.+||.|+|+||+.++
T Consensus         1 MIq~~t~l~v~DNSG--------ak~v~cI~v~g~~~~~~a~iGD~I~vsVkk~~~   48 (122)
T PRK05483          1 MIQQETRLNVADNSG--------AKEVMCIKVLGGSKRRYASIGDVIVVSVKEAIP   48 (122)
T ss_pred             CCCCCCEEEEeECCC--------CCEEEEEEEeCCCCCCccccCCEEEEEEEEcCC
Confidence            899999999999999        99999999997  45789999999999997777

>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.20  E-value=5.6e-12  Score=106.06  Aligned_cols=42  Identities=29%  Similarity=0.462  Sum_probs=37.7

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK   82 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk   82 (309)
                      |||++|.|+|+||||        ++.++||+||+  +.++|++||.|+|+||
T Consensus         1 MIq~~t~L~v~DNSG--------ak~v~cI~v~~~~~~~~a~vGD~I~vsVk   44 (122)
T PF00238_consen    1 MIQKGTILKVADNSG--------AKKVKCIKVLGGKRRKYASVGDIIVVSVK   44 (122)
T ss_dssp             -BETTEEEEESBSSS--------EEEEEEEEETSSTTTSEE-TTSEEEEEEE
T ss_pred             CCCCCCEEEEeeCCC--------CcEEEEEEEeCCcCccccccceEEEEEEe
Confidence            899999999999999        99999999997  4679999999999993

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In eubacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins, which have been grouped on the basis of sequence similarities []. Based on amino-acid sequence homology, it is predicted that ribosomal protein L14 is a member of a recently identified family of structurally related RNA-binding proteins []. L14 is a protein of 119 to 137 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_M 4A1C_J 4A1E_J 4A1A_J 4A17_J 1VSP_I 3D5D_O 1VSA_I 3MRZ_K 3F1F_O ....

>TIGR03673 rpl14p_arch 50S ribosomal protein L14P

Probab=99.19  E-value=1.5e-11  Score=105.33  Aligned_cols=48  Identities=23%  Similarity=0.304  Sum_probs=42.2

Q ss_pred             hHHHhhcceEEEEeCCcccccccccCCCceeEEEec-----cC-CceeeCcEEEEEEcCccc
Q psy4541          31 LHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-----QT-HIGTIGDKVLVAIKGEKK   86 (309)
Q Consensus        31 ~~mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~-----~~-~~g~vGD~IlvaIk~~k~   86 (309)
                      ..|||.+|.|+|+||||        |+.++||+|++     ++ .+|.+||.|+|+||+.++
T Consensus         8 ~~mIq~~t~L~VaDNSG--------ak~v~cI~vl~~~g~~~r~~~a~iGD~IvvsVK~~~p   61 (131)
T TIGR03673         8 TRALPVGSLLVCADNTG--------AKEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTP   61 (131)
T ss_pred             ceeeccCCEEEEeeCCC--------CceEEEEEEeeeCCCcccCCccccCCEEEEEEEECCc
Confidence            34999999999999999        99999999993     22 569999999999997666

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.

>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed

Probab=99.14  E-value=3.4e-11  Score=103.33  Aligned_cols=46  Identities=24%  Similarity=0.351  Sum_probs=41.7

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEec----cC--CceeeCcEEEEEEcCccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIKGEKK   86 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~----~~--~~g~vGD~IlvaIk~~k~   86 (309)
                      |||.+|+|+|+||||        |+.++||+|++    .+  .+|.+||.|+|+||+.++
T Consensus        11 mIq~~T~L~VaDNSG--------Ak~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVK~~~p   62 (132)
T PRK08571         11 GLPVGARLVCADNTG--------AKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTP   62 (132)
T ss_pred             eecCCCEEEEeeCCC--------CCeEEEEEEeccCCCCccCCccccCCEEEEEEEECCC
Confidence            999999999999999        99999999985    22  469999999999998776

>PTZ00054 60S ribosomal protein L23; Provisional

Probab=99.03  E-value=1.4e-10  Score=100.35  Aligned_cols=46  Identities=24%  Similarity=0.307  Sum_probs=42.3

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEec----cC--CceeeCcEEEEEEcCccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QT--HIGTIGDKVLVAIKGEKK   86 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~----~~--~~g~vGD~IlvaIk~~k~   86 (309)
                      |||.+|+|+|+||||        |+.++||+||+    .+  .+|.+||.|+|+||..++
T Consensus        18 mIq~~t~L~vaDNSG--------Ak~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVKk~~p   69 (139)
T PTZ00054         18 GLPVGAVVNCADNSG--------AKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKP   69 (139)
T ss_pred             eecCCCEEEEeeCCC--------ccEEEEEEEeccCcCCccCcccccCCEEEEEEEECCC
Confidence            999999999999999        99999999995    23  479999999999999877

>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=1.7e-09  Score=91.93  Aligned_cols=46  Identities=28%  Similarity=0.427  Sum_probs=43.0

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKK   86 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~   86 (309)
                      |||.+|+|+|.||||        ||..+||.|++  .+.+|.+||.|+|+||.+.|
T Consensus         1 miq~~t~l~vADNSG--------Ak~v~~I~V~gg~~r~~A~vGD~ivvsVKka~P   48 (122)
T COG0093           1 MIQVQTRLNVADNSG--------AKEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIP   48 (122)
T ss_pred             CcccccEEEEccCCC--------CcEEEEEEEeccccccccCCCCEEEEEEeeccC
Confidence            799999999999999        99999999998  34599999999999999887

>PTZ00320 ribosomal protein L14; Provisional

Probab=98.69  E-value=1.8e-08  Score=90.99  Aligned_cols=45  Identities=20%  Similarity=0.118  Sum_probs=42.7

Q ss_pred             hhcceEEEEeCCcccccccccCCCceeEEEeccCCceeeCcE----EEEEEcCcccc
Q psy4541          35 KLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDK----VLVAIKGEKKK   87 (309)
Q Consensus        35 ~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~~~g~vGD~----IlvaIk~~k~k   87 (309)
                      ..+|+|+|+||||        ||.++||+|+.++.+|.+||.    |+|+||+.+++
T Consensus        61 ~~qT~L~VaDNSG--------AK~V~CIkVl~~rr~A~IGDi~~~~IvVsVKka~P~  109 (188)
T PTZ00320         61 SDQVKLHCVDNTN--------CKHVRLISKATAERFAHCRVFPAVAHRVSVQRFKSG  109 (188)
T ss_pred             CCCcEEEEEeCCC--------CcEEEEEEEecCCCceeeccccCceEEEEEeecccC
Confidence            4799999999999        999999999988899999999    99999999984

>KOG0901|consensus

Probab=97.76  E-value=2e-05  Score=69.17  Aligned_cols=45  Identities=18%  Similarity=0.247  Sum_probs=41.8

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEeccCC------ceeeCcEEEEEEcCcc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH------IGTIGDKVLVAIKGEK   85 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~~------~g~vGD~IlvaIk~~k   85 (309)
                      ||+..+.++|+||||        +|..+||.|.+.++      .|.+||.|+..||++.
T Consensus        19 ~~~~g~~incaDNSg--------AknL~~isv~g~~Grlnrl~~A~~GD~vva~vKka~   69 (145)
T KOG0901|consen   19 GLPVGAVINCADNSG--------AKNLYCISVKGIKGRLNRLPAAGVGDMVVATVKKAH   69 (145)
T ss_pred             ccccceEEEecCCCC--------cceEEEEEEeccccccccccCCCcCCEEEEEEeccc
Confidence            799999999999999        99999999999654      7999999999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	2e-11
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	6e-10
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	2e-09
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	5e-09
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	2e-08
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	2e-08

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Length = 122

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 33/139 (23%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIKGEKKKGIIV 243
           I+  +RL+V DN           +   VI +   +      IGD V+  +K     G++ 
Sbjct: 2   IQQESRLKVADNSG--------AREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVK 53

Query: 244 GVK-------------KHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEK 290
             +             +       + D N  V+I D  +P GTRI  P+   LR      
Sbjct: 54  KGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELR------ 107

Query: 291 TLSKGADYTKLLAIATTFI 309
                 D+ K++++A   I
Sbjct: 108 ----DKDFMKIISLAPEVI 122

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Length = 122

 Score = 55.4 bits (133), Expect = 6e-10
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 33/139 (23%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAI--YNQTHIGTIGDKVLVAIKGEKKKGIIV 243
           I+  T L V DN           +    I +   +     T+GD ++ ++K    +G + 
Sbjct: 2   IQPQTYLEVADNTGA--------RKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVK 53

Query: 244 GVKKHQKPHIP-------------KTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEK 290
                +   +              + D N  V+I++   P GTR+  P+   LR      
Sbjct: 54  EGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELR------ 107

Query: 291 TLSKGADYTKLLAIATTFI 309
                  + K++++A   +
Sbjct: 108 ----EKGFMKIVSLAPEVL 122

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* 2qao_K* ... Length = 122

 Score = 53.9 bits (129), Expect = 2e-09
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 34/136 (25%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIKGEKKKGIIV 243
           I+  T L V DN           +    I +   +H     +GD + + IK    +G + 
Sbjct: 2   IQEQTMLNVADNSGA--------RRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVK 53

Query: 244 GVK-------------KHQKPHIPKTDTNNVVLIDDSG-TPLGTRIHVPIPSMLRTILKE 289
                           +     + + D N  VL++++   P+GTRI  P+   LR     
Sbjct: 54  KGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELR----- 108

Query: 290 KTLSKGADYTKLLAIA 305
                   + K++++A
Sbjct: 109 -----SEKFMKIISLA 119

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 121

 Score = 52.3 bits (125), Expect = 5e-09
 Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 34/139 (24%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH--IGTIGDKVLVAIKGEKKKGIIV 243
           I+  T L V DN           +    I I   ++     IGD ++  IK       + 
Sbjct: 2   IQPQTHLNVADNSGA--------RELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLE 53

Query: 244 G-------------VKKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEK 290
                           K     I + D N  V+ID  G P GTRI   I   LR    +K
Sbjct: 54  RSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELR----QK 109

Query: 291 TLSKGADYTKLLAIATTFI 309
                  + K++++A   +
Sbjct: 110 -------FAKIVSLAPEVL 121

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J Length = 137

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 18/140 (12%), Positives = 44/140 (31%), Gaps = 35/140 (25%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY------NQTHIGTIGDKVLVAIK----- 234
           + +   +   DN           +   +IA+       N+    ++GD V+  +K     
Sbjct: 17  LPVGAIMNCADNSG--------ARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPE 68

Query: 235 --GEKKKGIIVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKE 289
              +    I+V   K  +         + N  V+ +  G   G+ I  P+      +   
Sbjct: 69  LRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL--- 125

Query: 290 KTLSKGADYTKLLAIATTFI 309
                   + ++ + +   +
Sbjct: 126 --------WPRVASNSGVVV 137

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ... Length = 132

 Score = 50.9 bits (121), Expect = 2e-08
 Identities = 24/140 (17%), Positives = 56/140 (40%), Gaps = 35/140 (25%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY------NQTHIGTIGDKVLVAIKG---E 236
           ++  + +   DN           +  +VI+++      N+     +GDK+ V++     E
Sbjct: 12  LEKGSLITCADNTG--------ARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE 63

Query: 237 KKKGIIVGVKKHQKPHIP-------KTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKE 289
            ++ ++  V   Q+  I        K + N  V++D++  P GT +  PI   +     +
Sbjct: 64  MRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVA----Q 119

Query: 290 KTLSKGADYTKLLAIATTFI 309
           +       +  + + AT  +
Sbjct: 120 R-------FGSVASAATMIV 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
3j21_J	141	50S ribosomal protein L14P; archaea, archaeal, KIN	100.0
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	100.0
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	100.0
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	100.0
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	100.0
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	100.0
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	100.0
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	99.25
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	99.24
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	99.23
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	99.23
3j21_J	141	50S ribosomal protein L14P; archaea, archaeal, KIN	99.16
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	99.13
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	99.02
2ftc_I	118	Mitochondrial ribosomal protein L16, 39S ribosomal	80.63

>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.1e-43  Score=300.81  Aligned_cols=125  Identities=22%  Similarity=0.325  Sum_probs=108.0

Q ss_pred             ccccCCCCccccccccceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcCC----Cc--eeeeCCEEEEEE
Q psy4541         160 EKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ----TH--IGTIGDKVLVAI  233 (309)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~k----~r--~A~VGD~IvVSV  233 (309)
                      |+|+|++++++   ..+|+++   .|||.+|+|+|+|||||        ++++||+|++.    ++  +|++||+|++||
T Consensus         1 ~~~~~~~~~~~---~~~~~~~---~mIq~~t~L~VaDNSGA--------k~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsV   66 (141)
T 3j21_J            1 MAKKGAGATRG---VSAVRPT---RALPVGAYLTVADNSGA--------KVIQIIGVVEYHGTRRRLASAGVGDMVVATV   66 (141)
T ss_dssp             ---------CC---CCCSBCC---CCBCTTCEEEECSSSSE--------EEEEEEEETTCCCCTTCCCCBCSSCEEEEEE
T ss_pred             CCccccCCccc---ccccccc---ceeccCCEEEEccCCCC--------cEEEEEEEcCCCCcccccccCCcCCEEEEEE
Confidence            68999999887   4688887   89999999999999998        99999999982    34  499999999999


Q ss_pred             c-------CeeeeEEEEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheec
Q psy4541         234 K-------GEKKKGIIVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLA  303 (309)
Q Consensus       234 K-------GeV~kAVIVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlS  303 (309)
                      |       ||+++|||||||++++|   ++++|||||+||||++++|+|||||||||+|||++           |+||+|
T Consensus        67 Kk~~p~~kg~V~kAVIVRtkk~~rR~dGs~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~-----------~~KI~S  135 (141)
T 3j21_J           67 KKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAER-----------WVRIGS  135 (141)
T ss_dssp             EEECTTTTTCEEEEEEEECSSCEECTTSCEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHH-----------CHHHHH
T ss_pred             EecCCCCcCceEEEEEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhh-----------chHHhh
Confidence            8       89999999999999976   59999999999999999999999999999999998           999999


Q ss_pred             cccCCC
Q psy4541         304 IATTFI  309 (309)
Q Consensus       304 LA~~~I  309 (309)
                      ||+.++
T Consensus       136 lA~~iv  141 (141)
T 3j21_J          136 IASIIV  141 (141)
T ss_dssp             HCSEEC
T ss_pred             cccccC
Confidence            999875

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...

Probab=100.00  E-value=1.1e-41  Score=285.26  Aligned_cols=107  Identities=28%  Similarity=0.457  Sum_probs=102.6

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        +.++||+|++  ++++|++||+|++|||          ||+++|||||||++++| 
T Consensus         1 MIq~~t~L~vaDNSGA--------k~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~   72 (122)
T 3v2d_O            1 MIQPQTYLEVADNTGA--------RKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRP   72 (122)
T ss_dssp             CBCTTCEEEECBSSSE--------EEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECT
T ss_pred             CCCCCCEEEEeeCCCC--------cEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCC
Confidence            9999999999999998        9999999999  4779999999999998          89999999999999976 


Q ss_pred             --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                        ++++|||||+||+|++|+|+|||||||||+|||++          +|+||+|||++++
T Consensus        73 dG~~i~FddNa~Vlin~~~~p~GTrI~GpVarElr~~----------~~~KI~SlA~~v~  122 (122)
T 3v2d_O           73 DGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREK----------GFMKIVSLAPEVL  122 (122)
T ss_dssp             TSCEEEESSCEEEEECTTSCBSSSCBCSCBCTHHHHT----------TCHHHHHHSSCBC
T ss_pred             CCcEEEcCCcEEEEECCCCCEeeeEEEccchHHHhhC----------CCchhhccccccC
Confidence              59999999999999999999999999999999999          9999999999875

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M

Probab=100.00  E-value=1.9e-41  Score=283.77  Aligned_cols=107  Identities=32%  Similarity=0.510  Sum_probs=102.7

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        +.++||+|++  ++++|++||+|++|||          ||+++|||||||++++| 
T Consensus         1 MIq~~t~l~vaDNSGA--------k~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~   72 (122)
T 1whi_A            1 MIQQESRLKVADNSGA--------REVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRP   72 (122)
T ss_dssp             CBCTTCEEEECBSSSE--------EEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECT
T ss_pred             CCCccCEEEEeECCCC--------cEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecC
Confidence            9999999999999998        9999999999  4789999999999998          89999999999999976 


Q ss_pred             --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                        ++++|||||+||+|++|+|+|||||||||+|||++          +|+||+|||+.++
T Consensus        73 dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarElr~k----------~~~KI~SlA~~vl  122 (122)
T 1whi_A           73 DGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDK----------DFMKIISLAPEVI  122 (122)
T ss_dssp             TSCEECCSSCEEEEECTTSCBSSSCBCSCBCTHHHHT----------TCHHHHHHCSCBC
T ss_pred             CCCEEEeCCceEEEECCCCCEeeeEEEccchHHHhhc----------CCcchhhcccccC
Confidence              59999999999999999999999999999999998          8999999999875

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J

Probab=100.00  E-value=4.2e-41  Score=286.54  Aligned_cols=120  Identities=14%  Similarity=0.210  Sum_probs=111.0

Q ss_pred             CCCCccccccccceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcC-CC-----ceeeeCCEEEEEEc---
Q psy4541         164 GETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN-QT-----HIGTIGDKVLVAIK---  234 (309)
Q Consensus       164 ~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~-k~-----r~A~VGD~IvVSVK---  234 (309)
                      +++++++    .+|+++   .+||.+|+|+|+|||||        +.++||+|++ ++     ++|++||+|++|||   
T Consensus         2 ~~~~~~~----~~~~~~---~gl~~~t~L~VaDNSGA--------k~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~   66 (137)
T 3u5e_V            2 SGNGAQG----TKFRIS---LGLPVGAIMNCADNSGA--------RNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGK   66 (137)
T ss_dssp             CCSSCCS----CCCCCC---CCEETTCEEEECBSSSB--------CEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBC
T ss_pred             CccccCc----ceeeec---ccccCCCEEEEeeCCCC--------cEEEEEEEeCCCCcccccccCCcCCEEEEEEEECC
Confidence            3667777    788997   79999999999999998        9999999999 32     38999999999998   


Q ss_pred             ----CeeeeEEEEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccC
Q psy4541         235 ----GEKKKGIIVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATT  307 (309)
Q Consensus       235 ----GeV~kAVIVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~  307 (309)
                          ||+++|||||||++++|   ++++|||||+||+|++++|+|||||||||+|||++           |+||+|||++
T Consensus        67 p~~k~~V~~AVIVRtkk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~  135 (137)
T 3u5e_V           67 PELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL-----------WPRVASNSGV  135 (137)
T ss_dssp             TTTTTSCEEEEEEECCSCEECTTSCEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT-----------CHHHHHTCSS
T ss_pred             CCCCCcEEEEEEEEeccccCcCCCeEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH-----------hhHHHhcccc
Confidence                89999999999999976   59999999999999999999999999999999987           9999999998


Q ss_pred             CC
Q psy4541         308 FI  309 (309)
Q Consensus       308 ~I  309 (309)
                      ++
T Consensus       136 vv  137 (137)
T 3u5e_V          136 VV  137 (137)
T ss_dssp             BC
T ss_pred             cC
Confidence            75

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=4.5e-41  Score=281.24  Aligned_cols=106  Identities=32%  Similarity=0.465  Sum_probs=101.6

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        +.++||+|++  ++++|++||+|++|||          ||+++|||||||++++| 
T Consensus         1 MIq~~t~l~vaDNSGA--------k~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~   72 (121)
T 3bbo_M            1 MIQPQTHLNVADNSGA--------RELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRD   72 (121)
T ss_dssp             CCCSSCEEEECSSSSE--------EEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECT
T ss_pred             CCCccCEEEEeeCCCC--------cEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccC
Confidence            9999999999999998        9999999999  4789999999999998          89999999999999976 


Q ss_pred             --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                        ++++|||||+||+|++|+|+|||||||||+|||++           |+||+|||+.++
T Consensus        73 dG~~i~FddNa~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~vl  121 (121)
T 3bbo_M           73 NGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQK-----------FAKIVSLAPEVL  121 (121)
T ss_dssp             TSCEECCSSCEEEECCTTSSCSSSCCCSCCCGGGTTT-----------CHHHHHHSSCCC
T ss_pred             CCCEEEeCCceEEEECCCCCEeEeEEEcCcCHHHHhc-----------chHhhhccchhC
Confidence              59999999999999999999999999999999997           999999999875

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...

Probab=100.00  E-value=1.3e-40  Score=281.95  Aligned_cols=113  Identities=19%  Similarity=0.323  Sum_probs=105.7

Q ss_pred             cceeeccccccccccCeEEEeeCCccccccccCCCCeEEEEEcC----CCce--eeeCCEEEEEEc-------CeeeeEE
Q psy4541         175 DLYHTTPCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN----QTHI--GTIGDKVLVAIK-------GEKKKGI  241 (309)
Q Consensus       175 ~~~s~s~~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~----k~r~--A~VGD~IvVSVK-------GeV~kAV  241 (309)
                      .+|+++   .|||.+|+|+|+|||||        +.++||+|++    ++++  |++||+|++|||       ||+++||
T Consensus         4 ~~~~~~---~mIq~~t~l~vaDNSGA--------k~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AV   72 (132)
T 1vq8_K            4 LGADVT---QGLEKGSLITCADNTGA--------RELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAV   72 (132)
T ss_dssp             CSSEEC---CCEETTCEEEECBSSSE--------EEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEE
T ss_pred             cccccc---cccccCCEEEEeeCCCC--------cEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCCCCcEEEEE
Confidence            567887   89999999999999998        9999999998    3567  999999999995       9999999


Q ss_pred             EEeeeeccCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         242 IVGVKKHQKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       242 IVRtKk~~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                      |||||++++|   ++++|||||+||+|++|+|+|||||||||+|||+.           |+||+|||+.++
T Consensus        73 IVRtkk~~rR~dG~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-----------~~KI~SlA~~v~  132 (132)
T 1vq8_K           73 VVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQR-----------FGSVASAATMIV  132 (132)
T ss_dssp             EEECSSCEECTTSCEEEESSCEEEEECTTSCBSSSCBCSEECHHHHHH-----------SHHHHTTCSEEC
T ss_pred             EEEcCCCcCcCCCcEEEeCCceEEEECCCCCEeEEEEEcCcCHHHHhc-----------ccHhhhcccccC
Confidence            9999999976   59999999999999999999999999999999998           999999999875

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...

Probab=100.00  E-value=5.3e-41  Score=281.11  Aligned_cols=106  Identities=28%  Similarity=0.479  Sum_probs=101.3

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        +.++||+|++  ++++|++||+|++|||          ||+++|||||||++++| 
T Consensus         1 MIq~~t~L~vaDNSGA--------k~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~   72 (122)
T 3r8s_K            1 MIQEQTMLNVADNSGA--------RRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRP   72 (122)
T ss_dssp             CBCTTCEEEECBTTSE--------EEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECT
T ss_pred             CCCCCCEEEEccCCCC--------ceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCC
Confidence            9999999999999998        9999999999  4679999999999998          89999999999999976 


Q ss_pred             --CceeeCCceEEEECCC-CCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCC
Q psy4541         252 --HIPKTDTNNVVLIDDS-GTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTF  308 (309)
Q Consensus       252 --~~IkFddNAvVLLNkk-g~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~  308 (309)
                        ++++|||||+||+|++ |+|+|||||||||+|||++          +|+||+|||+.+
T Consensus        73 dG~~i~FddNa~Vlin~~~g~p~GTrI~GpVarElR~~----------~~~KI~SlA~~v  122 (122)
T 3r8s_K           73 DGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSE----------KFMKIISLAPEV  122 (122)
T ss_dssp             TSCEEEESSCEEEEEETTTEEESCSCBCSCCCGGGGSG----------GGHHHHHSSSCC
T ss_pred             CCcEEEcCCceEEEEeCCCCCEeeeEEEccccHHHhHc----------CCchhhccccCC
Confidence              5999999999999999 9999999999999999988          899999999874

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...

Probab=99.25  E-value=1.5e-12  Score=109.13  Aligned_cols=47  Identities=23%  Similarity=0.345  Sum_probs=43.1

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEecc--CCceeeCcEEEEEEcCcccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ--THIGTIGDKVLVAIKGEKKK   87 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~--~~~g~vGD~IlvaIk~~k~k   87 (309)
                      |||.+|+|+|+||||        |+.++||+||+.  +++|.+||.|+++||.++|.
T Consensus         1 MIq~~t~L~vaDNSG--------Ak~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~   49 (122)
T 3v2d_O            1 MIQPQTYLEVADNTG--------ARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPR   49 (122)
T ss_dssp             CBCTTCEEEECBSSS--------EEEEEEEEEESTTTCCCBCTTCEEEEEEEEECSS
T ss_pred             CCCCCCEEEEeeCCC--------CcEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCC
Confidence            899999999999999        999999999994  57999999999999966554

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...

Probab=99.24  E-value=1.6e-12  Score=109.04  Aligned_cols=47  Identities=23%  Similarity=0.311  Sum_probs=42.8

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEecc--CCceeeCcEEEEEEcCcccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ--THIGTIGDKVLVAIKGEKKK   87 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~--~~~g~vGD~IlvaIk~~k~k   87 (309)
                      |||.+|+|+|+||||        |+.++||+||+.  +++|.+||.|+|+||..+|.
T Consensus         1 MIq~~t~L~vaDNSG--------Ak~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~   49 (122)
T 3r8s_K            1 MIQEQTMLNVADNSG--------ARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPR   49 (122)
T ss_dssp             CBCTTCEEEECBTTS--------EEEEEEEEECSSSSCCCBCTTCEEEEEEEEECTT
T ss_pred             CCCCCCEEEEccCCC--------CceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCC
Confidence            899999999999999        999999999984  57899999999999966554

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M

Probab=99.23  E-value=1.9e-12  Score=108.44  Aligned_cols=46  Identities=28%  Similarity=0.424  Sum_probs=42.8

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEecc--CCceeeCcEEEEEEcCccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ--THIGTIGDKVLVAIKGEKK   86 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~--~~~g~vGD~IlvaIk~~k~   86 (309)
                      |||.+|+|+|+||||        |+.++||+||+.  +++|.+||.|+|+||..+|
T Consensus         1 MIq~~t~l~vaDNSG--------Ak~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p   48 (122)
T 1whi_A            1 MIQQESRLKVADNSG--------AREVLVIKVLGGSGRRYANIGDVVVATVKDATP   48 (122)
T ss_dssp             CBCTTCEEEECBSSS--------EEEEEEEEECSSTTCCCBCTTCEEEEEEEEECT
T ss_pred             CCCccCEEEEeECCC--------CcEEEEEEEcCCCcccccccCeEEEEEEEEecC
Confidence            899999999999999        999999999994  6899999999999996665

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.23  E-value=1.9e-12  Score=108.36  Aligned_cols=47  Identities=28%  Similarity=0.340  Sum_probs=43.3

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEecc--CCceeeCcEEEEEEcCcccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ--THIGTIGDKVLVAIKGEKKK   87 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~--~~~g~vGD~IlvaIk~~k~k   87 (309)
                      |||.+|+|+|+||||        |+.++||+||+.  +++|.+||.|+++||+.+|.
T Consensus         1 MIq~~t~l~vaDNSG--------Ak~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~   49 (121)
T 3bbo_M            1 MIQPQTHLNVADNSG--------ARELMCIRIIGASNRRYARIGDVIVAVIKEAIPN   49 (121)
T ss_dssp             CCCSSCEEEECSSSS--------EEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSS
T ss_pred             CCCccCEEEEeeCCC--------CcEEEEEEEcCCCCccccccCcEEEEEEEEccCC
Confidence            899999999999999        999999999994  68999999999999976663

>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.16  E-value=6.5e-12  Score=107.64  Aligned_cols=50  Identities=20%  Similarity=0.261  Sum_probs=43.3

Q ss_pred             cchHHHhhcceEEEEeCCcccccccccCCCceeEEEeccCC------ceeeCcEEEEEEcCccc
Q psy4541          29 PCLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTH------IGTIGDKVLVAIKGEKK   86 (309)
Q Consensus        29 ~~~~mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~~------~g~vGD~IlvaIk~~k~   86 (309)
                      -...|||.+|+|+|+||||        |+.++||+||+.++      +|.+||.|+|+||+++|
T Consensus        16 ~~~~mIq~~t~L~VaDNSG--------Ak~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p   71 (141)
T 3j21_J           16 RPTRALPVGAYLTVADNSG--------AKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRP   71 (141)
T ss_dssp             BCCCCBCTTCEEEECSSSS--------EEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECT
T ss_pred             cccceeccCCEEEEccCCC--------CcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCC
Confidence            3445999999999999999        99999999998433      59999999999996555

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...

Probab=99.13  E-value=1.1e-11  Score=105.18  Aligned_cols=48  Identities=17%  Similarity=0.308  Sum_probs=42.2

Q ss_pred             hHHHhhcceEEEEeCCcccccccccCCCceeEEEecc----CCc--eeeCcEEEEEEcCccc
Q psy4541          31 LHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ----THI--GTIGDKVLVAIKGEKK   86 (309)
Q Consensus        31 ~~mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~----~~~--g~vGD~IlvaIk~~k~   86 (309)
                      ..|||.+|+|+|+||||        |+.++||+||+.    +++  |.+||.|+|+||+.++
T Consensus         9 ~~mIq~~t~l~vaDNSG--------Ak~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p   62 (132)
T 1vq8_K            9 TQGLEKGSLITCADNTG--------ARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP   62 (132)
T ss_dssp             CCCEETTCEEEECBSSS--------EEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECT
T ss_pred             ccccccCCEEEEeeCCC--------CcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCC
Confidence            34999999999999999        999999999983    346  9999999999965555

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J

Probab=99.02  E-value=7.5e-11  Score=100.69  Aligned_cols=47  Identities=19%  Similarity=0.310  Sum_probs=42.4

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEeccC------CceeeCcEEEEEEcCcccc
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQT------HIGTIGDKVLVAIKGEKKK   87 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~------~~g~vGD~IlvaIk~~k~k   87 (309)
                      +||.+|+|+|+||||        |+.++||+||+.+      .+|.+||.|+|+||+.+|.
T Consensus        16 gl~~~t~L~VaDNSG--------Ak~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~   68 (137)
T 3u5e_V           16 GLPVGAIMNCADNSG--------ARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPE   68 (137)
T ss_dssp             CEETTCEEEECBSSS--------BCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTT
T ss_pred             cccCCCEEEEeeCCC--------CcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCC
Confidence            689999999999999        9999999999943      2799999999999977765

>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I

Probab=80.63  E-value=2.1  Score=35.22  Aligned_cols=66  Identities=8%  Similarity=-0.059  Sum_probs=53.0

Q ss_pred             ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccccCeEEEeeC
Q psy4541         120 DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDN  197 (309)
Q Consensus       120 ~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDN  197 (309)
                      .++|++|+|+.+.-.+            ..+.++|+-++|.......|.+-+|++++-+......-+..|..|.=+++
T Consensus        30 ~qiEaaR~ai~r~l~~------------k~~~~~wirv~P~~pvt~k~~e~RMG~GKG~~~~wva~Vk~G~ilfEi~g   95 (118)
T 2ftc_I           30 GHFEMMRLTINRSMDP------------KNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGG   95 (118)
T ss_pred             HHHHHHHHHHHheeec------------cCCeEEEEEECCCcccCcCchhcccccCCCCccEEEEEECCCCEEEEEec
Confidence            5789999999988321            25789999999999999999988898877777655566888888877766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d1whia_	122	b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stea	4e-15
d2j01o1	122	b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus	5e-14
d1vqok1	132	b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon	1e-12
d2gyci1	121	b.39.1.1 (I:2-122) Ribosomal protein L14 {Escheric	1e-08

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 68.6 bits (168), Expect = 4e-15
 Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 33/139 (23%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI-----KGEKK 238
           I+  +RL+V DN           +   VI +   +      IGD V+  +      G  K
Sbjct: 2   IQQESRLKVADNSG--------AREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVK 53

Query: 239 KGIIVGV--------KKHQKPHIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEK 290
           KG +V           +       + D N  V+I D  +P GTRI  P+   LR      
Sbjct: 54  KGQVVKAVVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELR------ 107

Query: 291 TLSKGADYTKLLAIATTFI 309
                 D+ K++++A   I
Sbjct: 108 ----DKDFMKIISLAPEVI 122

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

 Score = 65.1 bits (159), Expect = 5e-14
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 33/139 (23%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY--NQTHIGTIGDKVLVAI---------- 233
           I+  T L V DN           +    I +   +     T+GD ++ ++          
Sbjct: 2   IQPQTYLEVADNTG--------ARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVK 53

Query: 234 KGEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEK 290
           +G+  K ++V  KK  K       + D N  V+I++   P GTR+  P+   LR      
Sbjct: 54  EGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELR------ 107

Query: 291 TLSKGADYTKLLAIATTFI 309
                  + K++++A   +
Sbjct: 108 ----EKGFMKIVSLAPEVL 122

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 132

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 35/140 (25%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIY------NQTHIGTIGDKVLVAIK----- 234
           ++  + +   DN           +  +VI+++      N+     +GDK+ V++      
Sbjct: 12  LEKGSLITCADNTG--------ARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE 63

Query: 235 --GEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKE 289
              +  + ++V  +K  +       K + N  V++D++  P GT +  PI   +     +
Sbjct: 64  MRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVA----Q 119

Query: 290 KTLSKGADYTKLLAIATTFI 309
           +       +  + + AT  +
Sbjct: 120 R-------FGSVASAATMIV 132

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Length = 121

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 24/115 (20%)

Query: 186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQTHI--GTIGDKVLVAI---------- 233
           I+  T L V DN           +    I +   +H     +GD + + I          
Sbjct: 1   IQEQTMLNVADNSG--------ARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVK 52

Query: 234 KGEKKKGIIVGVKKHQKPH---IPKTDTNNVVLIDDSG-TPLGTRIHVPIPSMLR 284
           KG+  K ++V  KK  +     + + D N  VL++++   P+GTRI  P+   LR
Sbjct: 53  KGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELR 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1whia_	122	Ribosomal protein L14 {Bacillus stearothermophilus	100.0
d2j01o1	122	Ribosomal protein L14 {Thermus thermophilus [TaxId	100.0
d1vqok1	132	Ribosomal protein L14 {Archaeon Haloarcula marismo	100.0
d2gyci1	121	Ribosomal protein L14 {Escherichia coli [TaxId: 56	100.0
d1whia_	122	Ribosomal protein L14 {Bacillus stearothermophilus	99.29
d2j01o1	122	Ribosomal protein L14 {Thermus thermophilus [TaxId	99.28
d2gyci1	121	Ribosomal protein L14 {Escherichia coli [TaxId: 56	99.13
d1vqok1	132	Ribosomal protein L14 {Archaeon Haloarcula marismo	98.99
d2gyck1	131	Ribosomal protein L16p {Escherichia coli [TaxId: 5	89.8
d2j01q1	136	Ribosomal protein L16p {Thermus thermophilus [TaxI	86.58

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.6e-40  Score=274.40  Aligned_cols=107  Identities=32%  Similarity=0.510  Sum_probs=102.0

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        +.++||+|++  ++++|.+||+|++|||          |++++|||||||++++| 
T Consensus         1 MIq~~t~l~v~DNSGa--------k~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~   72 (122)
T d1whia_           1 MIQQESRLKVADNSGA--------REVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRP   72 (122)
T ss_dssp             CBCTTCEEEECBSSSE--------EEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECT
T ss_pred             CCccCcEEEEeeCCCC--------CEEEEEEEECCCCccccccCCEEEEEEeecccCCeeEcccceeeEEEEEeeeeecc
Confidence            9999999999999998        9999999998  4679999999999997          89999999999999866 


Q ss_pred             --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                        ++++|||||+||+|++++|+||||+||||+|||++          +|+||+|||+.+|
T Consensus        73 dG~~i~F~~Na~VLl~~~~~P~GTrI~Gpv~~elr~~----------~~~Ki~sLA~~vi  122 (122)
T d1whia_          73 DGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDK----------DFMKIISLAPEVI  122 (122)
T ss_dssp             TSCEECCSSCEEEEECTTSCBSSSCBCSCBCTHHHHT----------TCHHHHHHCSCBC
T ss_pred             CCceEEeCCCEEEEECCCCCEeeeeEeccchHHHhhc----------CCchhhcccchhC
Confidence              58999999999999999999999999999999999          9999999999986

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.9e-40  Score=272.16  Aligned_cols=107  Identities=28%  Similarity=0.457  Sum_probs=102.0

Q ss_pred             cccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC-
Q psy4541         185 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP-  251 (309)
Q Consensus       185 MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R-  251 (309)
                      |||.+|+|+|+|||||        +.++||++|+  ++++|.+||+|+||||          |++++|||||||++++| 
T Consensus         1 MIq~~t~l~v~DNSGa--------k~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~AvIVrtkk~~~r~   72 (122)
T d2j01o1           1 MIQPQTYLEVADNTGA--------RKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRP   72 (122)
T ss_dssp             CCCTTCEEEECSSSSC--------CEEEEEEECSSTTCCCCCTTCEEEEEEEECCTTCSSCSSCEEEEEEEECSSCEECT
T ss_pred             CCccCcEEEEeeCCCC--------cEEEEEEEeCCCCCcccccCcEEEEEEeecccCCccccCcCcceeEEeeecceEcC
Confidence            9999999999999998        9999999998  4678999999999997          79999999999999865 


Q ss_pred             --CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         252 --HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       252 --~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                        ++++|||||+||+|++++|+||||+||||+|||++          +|+||+|||+.+|
T Consensus        73 dG~~i~F~~Na~VLl~~~~~p~GTrI~Gpv~~elr~~----------~~~Ki~slA~~vi  122 (122)
T d2j01o1          73 DGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREK----------GFMKIVSLAPEVL  122 (122)
T ss_dssp             TSCEEECSSCEEEEECTTSCCSSSCCCSCCCTHHHHH----------CCHHHHHHCSCCC
T ss_pred             CCCEEEcCCCEEEEECCCCCEeeeEEeccchHHHhhc----------CCchhhccccccC
Confidence              59999999999999999999999999999999999          9999999999986

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.3e-38  Score=267.55  Aligned_cols=109  Identities=19%  Similarity=0.324  Sum_probs=101.1

Q ss_pred             ccccccccCeEEEeeCCccccccccCCCCeEEEEEcCC----C--ceeeeCCEEEEEEc-------CeeeeEEEEeeeec
Q psy4541         182 CLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQ----T--HIGTIGDKVLVAIK-------GEKKKGIIVGVKKH  248 (309)
Q Consensus       182 ~~~MIq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~k----~--r~A~VGD~IvVSVK-------GeV~kAVIVRtKk~  248 (309)
                      .+.|||.+|.|+|+|||||        +.++||+|++.    +  .+|++||+|+||||       |++++|||||||++
T Consensus         8 ~~~~Iq~~s~L~v~DNSGa--------k~v~cI~V~~~~~~k~r~~~a~vGD~IvvsVk~~~~~~k~~v~~AvIVrtkk~   79 (132)
T d1vqok1           8 VTQGLEKGSLITCADNTGA--------RELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKP   79 (132)
T ss_dssp             ECCCEETTCEEEECBSSSE--------EEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSSC
T ss_pred             ccccccccCEEEEeeCCCC--------ceEEEEEEeccccccccccccccceEEEEEEeecCCCcccceEEEEEEEecCc
Confidence            3479999999999999998        99999999972    2  26999999999996       89999999999999


Q ss_pred             cCC---CceeeCCceEEEECCCCCccceEEecchhHHHHhhhhhhcccCCCCchheeccccCCC
Q psy4541         249 QKP---HIPKTDTNNVVLIDDSGTPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTFI  309 (309)
Q Consensus       249 ~~R---~~IkFddNAvVLLNkkg~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~I  309 (309)
                      ++|   ++++|||||+||+|++++|+||||+||||+|+|++           |+||+|||+.||
T Consensus        80 ~~R~dG~~i~FddNa~VLi~~~~~p~GTRI~GpV~~Elr~k-----------~~Ki~sLA~~iv  132 (132)
T d1vqok1          80 IRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQR-----------FGSVASAATMIV  132 (132)
T ss_dssp             EECTTSCEEEESSCEEEEECTTSCBSSSCBCSCBCHHHHHH-----------SHHHHTTCSCBC
T ss_pred             EECCCCCEEEcCCCEEEEECCCCCEeeeEEeccHhHHHHhh-----------hhHHHhcccccC
Confidence            866   69999999999999999999999999999999987           999999999986

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-38  Score=261.80  Aligned_cols=105  Identities=29%  Similarity=0.492  Sum_probs=98.6

Q ss_pred             ccccCeEEEeeCCccccccccCCCCeEEEEEcC--CCceeeeCCEEEEEEc----------CeeeeEEEEeeeeccCC--
Q psy4541         186 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIK----------GEKKKGIIVGVKKHQKP--  251 (309)
Q Consensus       186 Iq~~T~LnVaDNSGA~~~a~~~~K~v~CI~V~~--k~r~A~VGD~IvVSVK----------GeV~kAVIVRtKk~~~R--  251 (309)
                      ||.+|+|+|+|||||        +.++||++|+  ++++|++||+|++|||          |++++|||||||++++|  
T Consensus         1 IQ~~S~l~v~DNSGa--------k~v~cI~vl~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~d   72 (121)
T d2gyci1           1 IQEQTMLNVADNSGA--------RRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPD   72 (121)
T ss_dssp             CCTTCEEEECSCSSB--------CEEEEEEETTCCSSSCCCTTCEEEECCCSBCSSSSCCTTCCEEEEEEECSSCEECTT
T ss_pred             CCcCCeEEEeeCCCc--------cEEEEEEEeCCCCCccCccCcEEEEEEEEccCCCccccccEEEEEEEEEeeeEeccC
Confidence            799999999999998        9999999998  4679999999999997          79999999999999866  


Q ss_pred             -CceeeCCceEEEECCCC-CccceEEecchhHHHHhhhhhhcccCCCCchheeccccCC
Q psy4541         252 -HIPKTDTNNVVLIDDSG-TPLGTRIHVPIPSMLRTILKEKTLSKGADYTKLLAIATTF  308 (309)
Q Consensus       252 -~~IkFddNAvVLLNkkg-~PlGTRI~GPVpkELR~k~~~~~~~~~~k~~KIlSLA~~~  308 (309)
                       ++++|||||+||+|+++ +|+||||+||||+|||++          +|+||+|||+++
T Consensus        73 G~~i~F~~Na~VLi~~~~~~p~GTrI~Gpv~~elr~~----------~~~Ki~slA~~v  121 (121)
T d2gyci1          73 GSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSE----------KFMKIISLAPEV  121 (121)
T ss_dssp             SCEECCSSCEEEEECSSSSCBSSSCCCSCBCSTTSSS----------SCSHHHHTCSCB
T ss_pred             CeEEEeCCCEEEEEcCCCCCcccCeEEccchHHHhHc----------CCchhhcccccC
Confidence             59999999999999997 699999999999999987          799999999875

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.29  E-value=2.6e-13  Score=111.45  Aligned_cols=49  Identities=29%  Similarity=0.422  Sum_probs=45.1

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCccccee
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKKKGE   89 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~k~~   89 (309)
                      |||.+|+|+|+||||        |+.++||+||+  ++.+|.+||.|+|+||+.+++..
T Consensus         1 MIq~~t~l~v~DNSG--------ak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~~~~~   51 (122)
T d1whia_           1 MIQQESRLKVADNSG--------AREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGV   51 (122)
T ss_dssp             CBCTTCEEEECBSSS--------EEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSS
T ss_pred             CCccCcEEEEeeCCC--------CCEEEEEEEECCCCccccccCCEEEEEEeecccCCe
Confidence            899999999999999        99999999998  45699999999999999887653

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

Probab=99.28  E-value=4.3e-13  Score=110.10  Aligned_cols=49  Identities=24%  Similarity=0.388  Sum_probs=45.0

Q ss_pred             HHhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCccccee
Q psy4541          33 HIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKKKGE   89 (309)
Q Consensus        33 mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~k~~   89 (309)
                      |||.+|.|+|+||||        ++.++||+||+  ++++|.+||.|+|+||+.+++..
T Consensus         1 MIq~~t~l~v~DNSG--------ak~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~   51 (122)
T d2j01o1           1 MIQPQTYLEVADNTG--------ARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGA   51 (122)
T ss_dssp             CCCTTCEEEECSSSS--------CCEEEEEEECSSTTCCCCCTTCEEEEEEEECCTTCS
T ss_pred             CCccCcEEEEeeCCC--------CcEEEEEEEeCCCCCcccccCcEEEEEEeecccCCc
Confidence            899999999999999        99999999997  45789999999999999988643

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=5e-12  Score=103.57  Aligned_cols=47  Identities=26%  Similarity=0.382  Sum_probs=43.0

Q ss_pred             HhhcceEEEEeCCcccccccccCCCceeEEEec--cCCceeeCcEEEEEEcCcccce
Q psy4541          34 IKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYN--QTHIGTIGDKVLVAIKGEKKKG   88 (309)
Q Consensus        34 I~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~--~~~~g~vGD~IlvaIk~~k~k~   88 (309)
                      ||.+|.|+|+||||        |+.++||+||+  .+.+|.+||.|+|+||+.+++.
T Consensus         1 IQ~~S~l~v~DNSG--------ak~v~cI~vl~~~~~~~a~vGD~I~vsVk~~~~~~   49 (121)
T d2gyci1           1 IQEQTMLNVADNSG--------ARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRG   49 (121)
T ss_dssp             CCTTCEEEECSCSS--------BCEEEEEEETTCCSSSCCCTTCEEEECCCSBCSSS
T ss_pred             CCcCCeEEEeeCCC--------ccEEEEEEEeCCCCCccCccCcEEEEEEEEccCCC
Confidence            79999999999999        99999999997  4578999999999999888764

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.99  E-value=4.1e-11  Score=99.53  Aligned_cols=50  Identities=16%  Similarity=0.266  Sum_probs=42.6

Q ss_pred             chHHHhhcceEEEEeCCcccccccccCCCceeEEEeccC------CceeeCcEEEEEEcCcccc
Q psy4541          30 CLHHIKLLTRLRVVDNCEIGRQAMAEGKPPRVIAIYNQT------HIGTIGDKVLVAIKGEKKK   87 (309)
Q Consensus        30 ~~~mI~~~TrL~VvDNSglg~~~~~~~k~~~CI~Vy~~~------~~g~vGD~IlvaIk~~k~k   87 (309)
                      ...+||.+|.|+|+||||        |+.++||+||+.+      .+|.+||.|+|+||+.+++
T Consensus         8 ~~~~Iq~~s~L~v~DNSG--------ak~v~cI~V~~~~~~k~r~~~a~vGD~IvvsVk~~~~~   63 (132)
T d1vqok1           8 VTQGLEKGSLITCADNTG--------ARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE   63 (132)
T ss_dssp             ECCCEETTCEEEECBSSS--------EEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTT
T ss_pred             ccccccccCEEEEeeCCC--------CceEEEEEEeccccccccccccccceEEEEEEeecCCC
Confidence            344799999999999999        9999999999732      2699999999999876553

>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Escherichia coli [TaxId: 562]

Probab=89.80  E-value=0.12  Score=41.61  Aligned_cols=64  Identities=19%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccccCeEEEeeC
Q psy4541         120 DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDN  197 (309)
Q Consensus       120 ~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDN  197 (309)
                      .|+|++|+++.+.              =..++++|+-+++.......|.+-+|+.++-++.-...-|..|..|.=+|+
T Consensus        42 ~qiEa~R~~i~R~--------------lkr~gk~wirifP~~pvTkKp~e~RMGkGKG~~~~wva~Vk~G~ilfEi~g  105 (131)
T d2gyck1          42 RQIEAARRAMTRA--------------VKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDG  105 (131)
T ss_dssp             HHHHHHHHHHHTT--------------CTTCCCEEECCCCCBCCCBCCSSCSSCCCBCCSCCCEEEECTEEECEEECC
T ss_pred             HHHHHHHHHHHHh--------------hhhCceEEEEecCcEEEEeccccceecCCcCCCceEEEEecCCCEEEEEcC
Confidence            6899999999998              246789999999999999999999999999888877777888888776655

>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Thermus thermophilus [TaxId: 274]

Probab=86.58  E-value=0.24  Score=39.89  Aligned_cols=65  Identities=17%  Similarity=0.138  Sum_probs=55.8

Q ss_pred             ehhhhhhhhhhhCCCCeEEEeeeccceeeccceeEEEeecccccCCCCccccccccceeeccccccccccCeEEEeeCC
Q psy4541         120 DNCEIGRQAMAEGKPPRVIAIYNQTHIGTIGDKVLVAIKGEKKKGETPSALKLCSDLYHTTPCLHHIKLLTRLRVVDNC  198 (309)
Q Consensus       120 ~~~e~~rq~~~~~~~~~~~~~~~~~~~g~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~s~s~~~~MIq~~T~LnVaDNS  198 (309)
                      .|+|++|+++.+.              -..++++|+-++|..+....|.+-+|+.++-++.-...-|..|..|.=+|+-
T Consensus        40 ~qiEa~R~~i~r~--------------lk~~gk~wiri~P~~pvTkKp~e~RMGkGKG~i~~wv~~Vk~G~ilfEi~gv  104 (136)
T d2j01q1          40 QQIEAARVAMVRH--------------FRRGGKIFIRIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGV  104 (136)
T ss_dssp             HHHHHHHHHHHHH--------------TSSCCEEEECCCCCEEECCCCSSCCSSSCSCCTTEEEEEECTTCEEEEEESS
T ss_pred             HHHHHHHHHHHhh--------------cccCCeEEEEecCCeEEEeecccccccCCCCCcceEEEEecCCcEEEEEcCC
Confidence            5899999999987              2346789999999999999999999999998888777778899988777763