Psyllid ID: psy4551

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
MNEGISKRSPYRSLKNQNQAPLEPLSVQESELRAEKLISTSSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSKSGSELPDGRPNGNTSAGSNSSDSDTLVESTAPVTNAENTLSPGAWKDVWAAK
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEEEEEccccccEEEEEEEEcccEEEEccccccccccHHHcccccccEEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEEEEEEEEccccccccccccEEEEEEccccccccHHHHHHHcccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcc
ccccccccccccccccccccccccccEccccccHHHHHccccccEEEEEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHcccccccccccEcccccEEEEEEcccccEEEEEEEEEEccccEEEEEEEEEccccEEEcHHHcccccHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEEcEEEEccccccEEEEEEEccccccccHHHHHHHcccEEEcccccccccccccccccccccccccccccccccccccccccccHHHccEEEEEc
mnegiskrspyrslknqnqapleplsvqESELRAEKListssdgsLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKanqethrltevkPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAqvmtvsdstpptlelyfvdygdsmdmpqpsvyqlnptflGLRFQAIECslanvrpvgdvwsEEAISCFEDLTHVAQWKVLLARVESYketstdlrsgsplpcvslfdtsgeqdvNISQELISRGfavssksgselpdgrpngntsagsnssdsdtlvestapvtnaentlspgawkdvwaak
mnegiskrspyrslknqnqapleplsvQESELRAEKListssdgsltVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQvmtvsdstpptLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKetstdlrsgsplPCVSLFDTSGEQDVNISQELISRGFAVssksgselpdgrpngntsagsnssdsdTLVESTapvtnaentlspgawkdvwaak
MNEGISKRSPYRSLKNQNQAPLEPLSVQESELRAEKLISTSSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSKSGSELPDGRPNGNTSAGSNSSDSDTLVESTAPVTNAENTLSPGAWKDVWAAK
*********************************************LTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYK************PCVSLF****************************************************************************
***************************************TSSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKAN*ETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFA*************************************************KDVWAA*
**********YRSLKNQNQAPLEPLSVQESELRAEKLISTSSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVES**********GSPLPCVSLFDTSGEQDVNISQELISRGFA***********************************PVTNAENTLSPGAWKDVWAAK
*********************LEPLSVQESELRAEKLISTSSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSKS*************************************TLSPGAWKDVWAAK
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MNEGISKRSPYRSLKNQNQAPLEPLSVQESELRAEKLISTSSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSKSGSELPDGRPNGNTSAGSNSSDSDTLVESTAPVTNAENTLSPGAWKDVWAAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query321 2.2.26 [Sep-21-2011]
Q9Y2W6561 Tudor and KH domain-conta no N/A 0.616 0.352 0.368 8e-37
Q80VL1560 Tudor and KH domain-conta yes N/A 0.616 0.353 0.368 2e-33
A9CPT4 1133 Tudor domain-containing p N/A N/A 0.417 0.118 0.305 2e-12
Q1L981 905 Tudor domain-containing p no N/A 0.570 0.202 0.276 2e-12
D2H0H6 1101 Tudor domain-containing p no N/A 0.420 0.122 0.311 3e-11
A6QLE1 1098 Tudor domain-containing p yes N/A 0.376 0.110 0.321 4e-11
Q8NAT2 981 Tudor domain-containing p no N/A 0.598 0.195 0.261 4e-11
D2H3M0 982 Tudor domain-containing p no N/A 0.644 0.210 0.253 5e-11
E2RDV1 1125 Tudor domain-containing p no N/A 0.411 0.117 0.305 1e-10
Q8K1H1 1086 Tudor domain-containing p no N/A 0.376 0.111 0.307 1e-10
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH PE=1 SV=2 Back     alignment and function desciption
 Score =  154 bits (389), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 129/239 (53%), Gaps = 41/239 (17%)

Query: 38  ISTSSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVK 97
            S  +D  L V++SA  +P+ FW+QI+  R+++LD+LV  MT +Y     ++        
Sbjct: 300 FSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPED-------- 351

Query: 98  PGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFV 157
                               +TV  G IVAA L  +  WYRA+V+   ++    L+LYFV
Sbjct: 352 --------------------LTVHVGDIVAAPLPTNGSWYRARVLGTLENG--NLDLYFV 389

Query: 158 DYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWK 217
           D+GD+ D P   +  L   FL L FQAIECSLA + P GD W EEA+  F+ LTH A WK
Sbjct: 390 DFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWK 449

Query: 218 VLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSKSGSELPD 276
            L+A++ SY +T       S  P + L+DTS  + ++I  EL+ +G+A+      ELP+
Sbjct: 450 PLVAKISSYVQTGI-----STWPKIYLYDTSNGKKLDIGLELVHKGYAI------ELPE 497

Homo sapiens (taxid: 9606)
>sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein OS=Mus musculus GN=Tdrkh PE=1 SV=1 Back     alignment and function description
>sp|A9CPT4|TDRD1_ORYLA Tudor domain-containing protein 1 OS=Oryzias latipes GN=tdrd1 PE=2 SV=1 Back     alignment and function description
>sp|Q1L981|TDRD5_DANRE Tudor domain-containing protein 5 OS=Danio rerio GN=tdrd5 PE=2 SV=1 Back     alignment and function description
>sp|D2H0H6|TDRD7_AILME Tudor domain-containing protein 7 OS=Ailuropoda melanoleuca GN=TDRD7 PE=3 SV=1 Back     alignment and function description
>sp|A6QLE1|TDRD7_BOVIN Tudor domain-containing protein 7 OS=Bos taurus GN=TDRD7 PE=2 SV=1 Back     alignment and function description
>sp|Q8NAT2|TDRD5_HUMAN Tudor domain-containing protein 5 OS=Homo sapiens GN=TDRD5 PE=1 SV=3 Back     alignment and function description
>sp|D2H3M0|TDRD5_AILME Tudor domain-containing protein 5 OS=Ailuropoda melanoleuca GN=TDRD5 PE=3 SV=1 Back     alignment and function description
>sp|E2RDV1|TDRD7_CANFA Tudor domain-containing protein 7 OS=Canis familiaris GN=TDRD7 PE=3 SV=1 Back     alignment and function description
>sp|Q8K1H1|TDRD7_MOUSE Tudor domain-containing protein 7 OS=Mus musculus GN=Tdrd7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
242013849 456 A kinase anchor protein, putative [Pedic 0.669 0.471 0.439 7e-56
91089625 460 PREDICTED: similar to tudor and KH domai 0.685 0.478 0.444 1e-53
170054813 611 tudor and KH domain-containing protein [ 0.629 0.330 0.443 1e-46
157168001 641 hypothetical protein AaeL_AAEL013072 [Ae 0.641 0.321 0.429 1e-45
332375779 463 unknown [Dendroctonus ponderosae] 0.813 0.563 0.376 2e-45
125985743 574 GA20088 [Drosophila pseudoobscura pseudo 0.844 0.472 0.367 8e-44
289742517 532 kinase anchor protein AKAP149 [Glossina 0.735 0.443 0.386 3e-42
195387273 579 GJ17491 [Drosophila virilis] gi|19414877 0.741 0.411 0.383 3e-42
195052979 582 GH13085 [Drosophila grimshawi] gi|193900 0.738 0.407 0.388 4e-42
195147852 575 GL18709 [Drosophila persimilis] gi|19410 0.747 0.417 0.369 6e-42
>gi|242013849|ref|XP_002427613.1| A kinase anchor protein, putative [Pediculus humanus corporis] gi|212512028|gb|EEB14875.1| A kinase anchor protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  223 bits (569), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 151/239 (63%), Gaps = 24/239 (10%)

Query: 29  ESELRAEKLISTSSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQ 88
           +S  + +K I+TSS+G L V++SA+ NPDR W+Q+M    +ELD+L+E MTDYY +K N+
Sbjct: 224 DSYTQKQKFIATSSNGLLEVYVSAIENPDRMWLQMMGPSTVELDRLIEQMTDYYKKKENK 283

Query: 89  ETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDST 148
             H L EVK GQIVAA    D +WYRA+V  ++                       +D+ 
Sbjct: 284 ILHALHEVKCGQIVAAPFTYDDRWYRAEVQEIQ-----------------------NDNN 320

Query: 149 PPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFE 208
              + LY+VDYGDS    +  +++L   FL LRFQAIEC LA ++P G  WS+E+I   E
Sbjct: 321 ENYILLYYVDYGDSSRCKKNEIFELRTDFLRLRFQAIECMLAKIKPSGSTWSDESIDLLE 380

Query: 209 DLTHVAQWKVLLARVESYKETSTDL-RSGSPLPCVSLFDTSGEQDVNISQELISRGFAV 266
           DLTHVA WK L+A++ +YK+  T   R GSP+PC+ L+D  GE  +N+++EL+ +GFA+
Sbjct: 381 DLTHVALWKSLMAKIHTYKDRPTKCQREGSPVPCIELYDIQGENTINVAEELVRKGFAI 439

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91089625|ref|XP_973443.1| PREDICTED: similar to tudor and KH domain-containing protein [Tribolium castaneum] gi|270012611|gb|EFA09059.1| hypothetical protein TcasGA2_TC006774 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|170054813|ref|XP_001863300.1| tudor and KH domain-containing protein [Culex quinquefasciatus] gi|167874987|gb|EDS38370.1| tudor and KH domain-containing protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157168001|ref|XP_001663280.1| hypothetical protein AaeL_AAEL013072 [Aedes aegypti] gi|108870493|gb|EAT34718.1| AAEL013072-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|332375779|gb|AEE63030.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|125985743|ref|XP_001356635.1| GA20088 [Drosophila pseudoobscura pseudoobscura] gi|54644960|gb|EAL33700.1| GA20088 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|289742517|gb|ADD20006.1| kinase anchor protein AKAP149 [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|195387273|ref|XP_002052320.1| GJ17491 [Drosophila virilis] gi|194148777|gb|EDW64475.1| GJ17491 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195052979|ref|XP_001993412.1| GH13085 [Drosophila grimshawi] gi|193900471|gb|EDV99337.1| GH13085 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195147852|ref|XP_002014888.1| GL18709 [Drosophila persimilis] gi|194106841|gb|EDW28884.1| GL18709 [Drosophila persimilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query321
FB|FBgn0031401576 papi "papi" [Drosophila melano 0.591 0.329 0.386 5.1e-29
UNIPROTKB|I3LP40558 TDRKH "Uncharacterized protein 0.560 0.322 0.403 2.6e-28
UNIPROTKB|B4DJ68337 TDRKH "Tudor and KH domain-con 0.579 0.551 0.384 5e-28
MGI|MGI:1919884560 Tdrkh "tudor and KH domain con 0.579 0.332 0.389 7.4e-28
UNIPROTKB|Q5SZR4557 TDRKH "Tudor and KH domain-con 0.579 0.333 0.384 2e-27
UNIPROTKB|G3V8T7560 Tdrkh "RCG51933, isoform CRA_a 0.579 0.332 0.389 2e-27
UNIPROTKB|Q9Y2W6561 TDRKH "Tudor and KH domain-con 0.579 0.331 0.384 2e-27
UNIPROTKB|E2RBJ9563 TDRKH "Uncharacterized protein 0.579 0.330 0.384 3.5e-27
UNIPROTKB|J9P0T0605 TDRKH "Uncharacterized protein 0.579 0.307 0.384 4.5e-27
UNIPROTKB|F1MUI1566 TDRKH "Uncharacterized protein 0.439 0.249 0.446 2.7e-26
FB|FBgn0031401 papi "papi" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 328 (120.5 bits), Expect = 5.1e-29, P = 5.1e-29
 Identities = 83/215 (38%), Positives = 124/215 (57%)

Query:   114 RAQVMTVKP--GQIVAALLHLDQKWYRAQVMTVSDS--TPP--TLELYFVDYGDSMDMPQ 167
             RA+ +   P  GQIVAA+   D+KWYRA+++ +  +   P    ++LYFVDYGDS  +  
Sbjct:   303 RAKHVLTAPYVGQIVAAVFKFDEKWYRAEIVDIMPNQYNPKEQVIDLYFVDYGDSEYISP 362

Query:   168 PSVYQLNPTFLGLRFQAIECSLANVRPVGDV----WSEEAISCFEDLTHVAQWKVLLARV 223
               + +L   FL LRFQA+EC LANV+         W + +I+ FE+LT VA W+ L+ARV
Sbjct:   363 ADICELRTDFLTLRFQAVECFLANVKSTIQTEPITWPKSSIAKFEELTEVAHWRKLIARV 422

Query:   224 ESYKE-------TSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSSKSGSELPD 276
              +YKE        S   + G+PLP V LFD +   ++NI+  +I++GFA+       L D
Sbjct:   423 VTYKERPRATTAVSAAAKEGTPLPGVELFDPADNSELNIADLMITQGFALP------LDD 476

Query:   277 GRPNGNTSAGSNSSDSDTLVESTAPVTNAENTLSP 311
               P  + S+ + SS+SD+ +E    V+N    L+P
Sbjct:   477 SYPVRSRSS-TPSSNSDSTIEELC-VSNPVTPLTP 509
GO:0003723 "RNA binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0043186 "P granule" evidence=IDA
UNIPROTKB|I3LP40 TDRKH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B4DJ68 TDRKH "Tudor and KH domain-containing protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919884 Tdrkh "tudor and KH domain containing protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SZR4 TDRKH "Tudor and KH domain-containing protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3V8T7 Tdrkh "RCG51933, isoform CRA_a" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2W6 TDRKH "Tudor and KH domain-containing protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBJ9 TDRKH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0T0 TDRKH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MUI1 TDRKH "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
pfam00567118 pfam00567, TUDOR, Tudor domain 7e-21
cd0450848 cd04508, TUDOR, Tudor domains are found in many eu 7e-08
>gnl|CDD|215998 pfam00567, TUDOR, Tudor domain Back     alignment and domain information 
 Score = 85.9 bits (213), Expect = 7e-21
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 31/144 (21%)

Query: 48  VFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLH 107
           V ++ + +P RF++Q  +D   +L++L E + +YY  K  +        K G    A   
Sbjct: 6   VVVTHIESPGRFYIQPKSD-DKKLEKLTEELQEYYLSKPPESLP----PKVGDGCVAAFS 60

Query: 108 LDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQ 167
            D KWYRA+++      +V                          E++F+DYG++  +P 
Sbjct: 61  EDGKWYRAKILVSLDDGLV--------------------------EVFFIDYGNTETVPL 94

Query: 168 PSVYQLNPTFLGLRFQAIECSLAN 191
             +  L   F  L  QAI+CSLA 
Sbjct: 95  SDLRPLPSEFASLPPQAIKCSLAG 118

Length = 118
>gnl|CDD|119391 cd04508, TUDOR, Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 321
PF00567121 TUDOR: Tudor domain; InterPro: IPR008191 There are 99.91
KOG2039|consensus875 99.73
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 99.4
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 99.39
KOG2279|consensus608 99.33
smart0074361 Agenet Tudor-like domain present in plant sequence 98.58
PF06003264 SMN: Survival motor neuron protein (SMN); InterPro 98.18
KOG2279|consensus608 97.59
smart00318138 SNc Staphylococcal nuclease homologues. 96.93
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 96.78
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 96.67
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 95.89
PF0564168 Agenet: Agenet domain; InterPro: IPR008395 This do 95.64
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 93.72
PF15057124 DUF4537: Domain of unknown function (DUF4537) 93.62
KOG3026|consensus262 93.54
PRK06518177 hypothetical protein; Provisional 92.21
KOG4327|consensus218 91.52
KOG3038|consensus264 88.75
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 87.94
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 85.9
PF15057124 DUF4537: Domain of unknown function (DUF4537) 83.45
PF1130275 DUF3104: Protein of unknown function (DUF3104); In 80.36
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] Back     alignment and domain information 
Probab=99.91  E-value=1.5e-23  Score=170.07  Aligned_cols=121  Identities=26%  Similarity=0.541  Sum_probs=96.7

Q ss_pred             CCCCEEEEEEEEEccCCeEEEEEcCCchhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEe
Q psy4551          41 SSDGSLTVFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTV  120 (321)
Q Consensus        41 ~~g~~~~V~Vt~V~sp~~Fyvq~~~~~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i  120 (321)
                      +.|+.+.|.||||.+|++||++.... ...+++|+++|++++.....   ........|..|++.+..++.||||+|...
T Consensus         1 ~~~~~~~v~It~v~~~~~~~v~~~~~-~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~w~Ra~I~~~   76 (121)
T PF00567_consen    1 PVGKTFEVYITHVDSPGEFYVQPDSA-DKAYEKLQEELQDYYENNPK---SPSPESNPGEGCLCVVSEDGRWYRAVITVD   76 (121)
T ss_dssp             ----EEEEEEEEECTTSEEEEEECCC-HHHHHHHHHHHHHHHHHS-C---TTCST--TTEEEEEEETTTSEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEecCCEEEEEEcCC-HHHHHHHHHHHHHHHhcccc---cCccccccCCEEEEEEecCCceeeEEEEEe
Confidence            46889999999999999999977764 55899999999999987653   234567788888888888999999999332


Q ss_pred             cCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecc
Q psy4551         121 KPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLAN  191 (321)
Q Consensus       121 ~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~Lag  191 (321)
                      .                          +...++|+|||||+++.|+.++||+||+.|..+|+||++|+|+|
T Consensus        77 ~--------------------------~~~~~~V~~iD~G~~~~v~~~~l~~l~~~~~~~P~~a~~~~L~g  121 (121)
T PF00567_consen   77 I--------------------------DENQYKVFLIDYGNTEKVSASDLRPLPPEFASLPPQAIKCKLAG  121 (121)
T ss_dssp             E--------------------------CTTEEEEEETTTTEEEEEEGGGEEE--HHHCSSSSSCEEEEET-
T ss_pred             c--------------------------ccceeEEEEEecCceEEEcHHHhhhhCHHHhhCChhhEEEEEcC
Confidence            1                          22489999999999999999999999999999999999999997

Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
>KOG2039|consensus Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>KOG2279|consensus Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>KOG2279|consensus Back     alignment and domain information
>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>KOG3026|consensus Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>KOG4327|consensus Back     alignment and domain information
>KOG3038|consensus Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
2diq_A110 Solution Structure Of The Tudor Domain Of Tudor And 2e-11
3fdr_A94 Crystal Structure Of Tdrd2 Length = 94 7e-11
4b9x_A226 Structure Of Extended Tudor Domain Td3 From Mouse T 1e-09
4b9w_A201 Structure Of Extended Tudor Domain Td3 From Mouse T 2e-09
2wac_A218 Extended Tudor Domain Of Drosophila Melanogaster Tu 8e-08
>pdb|2DIQ|A Chain A, Solution Structure Of The Tudor Domain Of Tudor And Kh Domain Containing Protein Length = 110 Back     alignment and structure 
Iteration: 1

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 32/125 (25%)
Query: 69  IELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVM-TVKPGQIVA 127
           ++LD+LV  MT +Y     ++      V  G IVAA L  +  WYRA+V+ T++ G    
Sbjct: 10  LQLDKLVNEMTQHYENSVPEDL----TVHVGDIVAAPLPTNGSWYRARVLGTLENGN--- 62
Query: 128 ALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIEC 187
                                   L+LYFVD+GD+ D P   +  L   FL L FQAIEC
Sbjct: 63  ------------------------LDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIEC 98
Query: 188 SLANV 192
           SLA +
Sbjct: 99  SLARI 103
>pdb|3FDR|A Chain A, Crystal Structure Of Tdrd2 Length = 94 Back     alignment and structure
>pdb|4B9X|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 Length = 226 Back     alignment and structure
>pdb|4B9W|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 In Complex With Mili Peptide Containing Dimethylarginine 45. Length = 201 Back     alignment and structure
>pdb|2WAC|A Chain A, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn ( P100) Length = 218 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query321
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 2e-35
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 2e-35
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 8e-32
3bdl_A570 Staphylococcal nuclease domain-containing protein 2e-29
2diq_A110 Tudor and KH domain-containing protein; tudor doma 4e-24
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 9e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 1e-07
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 6e-06
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 1e-05
2d9t_A78 Tudor domain-containing protein 3; structural geno 2e-05
3s6w_A54 Tudor domain-containing protein 3; methylated argi 3e-05
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 6e-05
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Length = 169 Back     alignment and structure
 Score =  125 bits (315), Expect = 2e-35
 Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 51/213 (23%)

Query: 48  VFMSAVANPDRFWVQIMNDRAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLH 107
             +     P  F+VQ+ +D    L+Q+ + + D       Q+    +++K G +  A   
Sbjct: 6   CVVVQFDGPMSFYVQMESDVP-ALEQMTDKLLDAE-----QDLPAFSDLKEGALCVAQFP 59

Query: 108 LDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQ 167
            D+ +YRAQ+  V                                E++F+D+G++    Q
Sbjct: 60  EDEVFYRAQIRKVLDDGKC--------------------------EVHFIDFGNNAVTQQ 93

Query: 168 PSVYQLNPTFLGLRFQAIECSLANVRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYK 227
               QL          +  C L              +  F D       +     + + K
Sbjct: 94  --FRQLPEELAKPARYSRHCELDASTI--SKCDAALLQSFIDTRF---SETFQVEILATK 146

Query: 228 ETSTDLRSGSPLPCVSLFDTSGEQDVNISQELI 260
            T T          V LF  S     NIS++L 
Sbjct: 147 GTGT--------HVVRLFYQS----KNISEKLQ 167
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 110 Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} Length = 94 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Length = 77 Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Length = 64 Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Length = 59 Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Length = 78 Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Length = 54 Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 88 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 100.0
4b9x_A226 TDRD1, tudor domain-containing protein 1; replicat 100.0
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 100.0
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 100.0
3bdl_A570 Staphylococcal nuclease domain-containing protein 100.0
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 100.0
2diq_A110 Tudor and KH domain-containing protein; tudor doma 99.91
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 99.9
2eqk_A85 Tudor domain-containing protein 4; structural geno 99.74
2d9t_A78 Tudor domain-containing protein 3; structural geno 99.62
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 99.61
3s6w_A54 Tudor domain-containing protein 3; methylated argi 99.6
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 99.59
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 99.59
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 99.56
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 99.19
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 98.64
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 98.4
3qii_A85 PHD finger protein 20; tudor domain, structural ge 98.35
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 97.25
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 97.13
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 95.96
3bdl_A 570 Staphylococcal nuclease domain-containing protein 95.95
2eqj_A66 Metal-response element-binding transcription facto 93.87
3h8z_A128 FragIle X mental retardation syndrome-related Pro; 93.84
2eqk_A85 Tudor domain-containing protein 4; structural geno 93.01
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 92.45
2e5p_A68 Protein PHF1, PHD finger protein 1; tudor domain, 92.25
2ro0_A92 Histone acetyltransferase ESA1; HAT, chromodomain, 92.06
2lcc_A76 AT-rich interactive domain-containing protein 4A; 91.22
2f5k_A102 MORF-related gene 15 isoform 1; beta barrel, gene 91.05
2eko_A87 Histone acetyltransferase htatip; chromo domain, h 90.97
1wgs_A133 MYST histone acetyltransferase 1; tudor domain, MY 90.29
2e5q_A63 PHD finger protein 19; tudor domain, isoform B, st 90.21
2rnz_A94 Histone acetyltransferase ESA1; HAT, chromodomain, 89.99
2bud_A92 Males-absent on the first protein; transferase, MO 89.73
1ssf_A156 Transformation related protein 53 binding protein 89.64
3dlm_A213 Histone-lysine N-methyltransferase setdb1; setdb1_ 89.1
2g3r_A123 Tumor suppressor P53-binding protein 1; tandem tud 88.17
2xk0_A69 Polycomb protein PCL; transcription, aromatic CAGE 88.05
3s6w_A54 Tudor domain-containing protein 3; methylated argi 85.88
2m0o_A79 PHD finger protein 1; tudor domain, H3K36ME3 bindi 84.4
2lrq_A85 Protein MRG15, NUA4 complex subunit EAF3 homolog; 84.35
2qqr_A118 JMJC domain-containing histone demethylation prote 82.98
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 81.03
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=8.1e-42  Score=306.18  Aligned_cols=194  Identities=27%  Similarity=0.416  Sum_probs=173.3

Q ss_pred             cccccccCCCCCEEEEEEEEEccCCeEEEEEcCCc-hhHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCe
Q psy4551          33 RAEKLISTSSDGSLTVFMSAVANPDRFWVQIMNDR-AIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQK  111 (321)
Q Consensus        33 ~~~~~~~~~~g~~~~V~Vt~V~sp~~Fyvq~~~~~-~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~  111 (321)
                      -.++.+.++.|+.++|+||||.||++||+|+.+.+ ...+++|+++|+++|.+..    +....++.|++|+|+|+.||.
T Consensus         6 l~~~~~~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~----~~~~~~~~G~~c~a~~~~d~~   81 (201)
T 4b9w_A            6 LEWTWVEFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKP----PNGFKAEIGRPCCAFFSGDGN   81 (201)
T ss_dssp             CCCCBCCCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSS----CCCCCCCTTCEEEEEETTTTE
T ss_pred             ceeEEEEcCCCCEEEEEEEEEeCCCEEEEEECCCchHHHHHHHHHHHHHHHhcCC----CCCCCCCCCCEEEEEECCCCe
Confidence            46788999999999999999999999999998754 3479999999999998653    234578999999999999999


Q ss_pred             EEEEEEEEecCCceeeeeeecccceeeeeeecccCCCCCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecc
Q psy4551         112 WYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLAN  191 (321)
Q Consensus       112 WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~Lag  191 (321)
                      ||||+|+++.++                          ..+.|+||||||++.|+.++||+|+++|..+|+||++|+|+|
T Consensus        82 wyRa~V~~~~~~--------------------------~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~  135 (201)
T 4b9w_A           82 WYRALVKEILPS--------------------------GNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVD  135 (201)
T ss_dssp             EEEEEEEEECTT--------------------------SCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESS
T ss_pred             EEEEEEEEECCC--------------------------CeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcC
Confidence            999999997432                          269999999999999999999999999999999999999999


Q ss_pred             eeeCCCCChHHHHHHHHHhhcccCceEEEEEEEEEeccccccCCCCCccEEEEEeCCCCccccHHHHHHHcCCcccc
Q psy4551         192 VRPVGDVWSEEAISCFEDLTHVAQWKVLLARVESYKETSTDLRSGSPLPCVSLFDTSGEQDVNISQELISRGFAVSS  268 (321)
Q Consensus       192 V~P~~~~Ws~ea~~~f~~l~~~~~~k~l~a~V~~~~~~~~~~~~~~~~~~V~L~d~~~~~~~sIn~~LI~~GlA~~~  268 (321)
                      |+|.+..|+.+|+++|++++.+   +.+.++|+++.+         +.+.|.|+|.++..+++||+.||++|||..+
T Consensus       136 v~p~~~~w~~ea~~~f~~l~~~---k~l~~~V~~~~~---------~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~kc  200 (201)
T 4b9w_A          136 IQPPNKHWTKEATARFQACVVG---LKLQARVVEITA---------NGVGVELTDLSTPYPKIISDVLIREQLVLRC  200 (201)
T ss_dssp             EECSSSSCCHHHHHHHHHHHTT---CCEEEEEEEEET---------TEEEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred             EEcCCCCCCHHHHHHHHHHHCC---CEEEEEEEEEeC---------CEEEEEEEECCCCCccchHHHHHHCcCeecc
Confidence            9999999999999999999986   899999988653         3468999999877889999999999999764
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus} Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Back     alignment and structure
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} Back     alignment and structure
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens} Back     alignment and structure
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A Back     alignment and structure
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3 Back     alignment and structure
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3 Back     alignment and structure
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 Back     alignment and structure
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} Back     alignment and structure
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A Back     alignment and structure
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} Back     alignment and structure
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster} Back     alignment and structure
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A* Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 321
d2diqa197 b.34.9.1 (A:8-104) Tudor and KH domain-containing 6e-22
d2hqxa190 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human ( 1e-10
d1mhna_59 b.34.9.1 (A:) Survival motor neuron protein 1, smn 3e-08
d1mhna_59 b.34.9.1 (A:) Survival motor neuron protein 1, smn 1e-06
d2d9ta160 b.34.9.1 (A:8-67) Tudor domain-containing protein 3e-07
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (214), Expect = 6e-22
 Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 30/126 (23%)

Query: 67  RAIELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIV 126
           R+++LD+LV  MT +Y     ++      V  G IVAA L  +  WYRA+V+        
Sbjct: 1   RSLQLDKLVNEMTQHYENSVPEDL----TVHVGDIVAAPLPTNGSWYRARVLGTLENG-- 54

Query: 127 AALLHLDQKWYRAQVMTVSDSTPPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIE 186
                                    L+LYFVD+GD+ D P   +  L   FL L FQAIE
Sbjct: 55  ------------------------NLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIE 90

Query: 187 CSLANV 192
           CSLA +
Sbjct: 91  CSLARI 96
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query321
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 99.89
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 99.82
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 99.61
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 99.61
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 95.73
d1wgsa_133 Probable histone acetyltransferase MYST1 {Mouse (M 94.1
d2buda188 Putative histone acetyltransferase MOF {Fruit fly 93.01
d2qqra256 Jumonji domain-containing protein 2A {Human (Homo 89.67
d2qqra159 Jumonji domain-containing protein 2A {Human (Homo 87.25
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 84.9
d2diga155 Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 82.47
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-24  Score=169.74  Aligned_cols=94  Identities=45%  Similarity=0.732  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHhhcCcccccccccCCCCCEEEEEEccCCeEEEEEEEEecCCceeeeeeecccceeeeeeecccCCC
Q psy4551          69 IELDQLVESMTDYYNQKANQETHRLTEVKPGQIVAALLHLDQKWYRAQVMTVKPGQIVAALLHLDQKWYRAQVMTVSDST  148 (321)
Q Consensus        69 ~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~G~~caa~~~~d~~WyRa~V~~i~~~~~~~~~~~~~~~~~r~~v~~v~d~~  148 (321)
                      .+|++|+++|+++|++..    +....+++|++|+|+|+.||.||||+|+++.++                         
T Consensus         3 ~~l~~L~~~l~~~y~~~~----~~~~~~~~G~~~~a~~~~d~~wyRa~V~~~~~~-------------------------   53 (97)
T d2diqa1           3 LQLDKLVNEMTQHYENSV----PEDLTVHVGDIVAAPLPTNGSWYRARVLGTLEN-------------------------   53 (97)
T ss_dssp             HHHHHHHHHHHHHHTTSC----CCCCCCCTTCEEEECCTTTCSCEEEEECCCCSS-------------------------
T ss_pred             HHHHHHHHHHHHHHccCC----CCcCCCCCCCEEEEEECCCCeEEEEEEEEECCC-------------------------
Confidence            478999999999998754    234679999999999988999999999997321                         


Q ss_pred             CCeEEEEEEEeCCeEEeecCCccccCcccccCCceEEEEEecce
Q psy4551         149 PPTLELYFVDYGDSMDMPQPSVYQLNPTFLGLRFQAIECSLANV  192 (321)
Q Consensus       149 ~~~v~V~fIDyGn~~~V~~~~Lr~L~~~f~~lP~qAi~C~LagV  192 (321)
                       .++.|+|||||+.+.|+.++||+|+++|..+|+||++|+|+||
T Consensus        54 -~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~lP~~A~~c~L~~v   96 (97)
T d2diqa1          54 -GNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARI   96 (97)
T ss_dssp             -SCEEEEETTTCCEEEECGGGCEECCHHHHSSCCSSCCSCSSCS
T ss_pred             -CEEEEEEEeeCCEEEEeHHHhhccCHHHhhCChhhEEEEECcC
Confidence             3699999999999999999999999999999999999999997
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure