Psyllid ID: psy4572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MPKSNLTLCGVLPSLIFRVENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPELLIKASS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccccccccccccccEccccHHHHHcccccccccccccccccccccEccccHHHHHHHccccccccccccccccEccccHHHHHcHHcccccccccccccccEccccHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccccccEccccHHHHHHHHcccccccccccccccccEEEcccEEEEEEEEEcccccccccccccccEccccHHHHHHHEHHHHcccccccccccccccEccccHHHHHHHHHHHHcccccccccccccccEccccccEEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mpksnltlcgvlpslifrvengapggssgevkkrsrkstpqkldgphkcehcEKEFENRRALKRheknhtqektfpcTVCLKMFKTKAQREEHIashvtdsefkcdqcpyvAKRIKYLRYHMKKHRKEysaycepcqegffsrdklethniakhgaqpyqcetCRKLFLSKYSlfthnkkhlpieeRLHYQCElcgksfnnkqtfsLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLsnmlssdplpELLIKASS
Flexible Loop (DISEMBL)
mpksnltlCGVLPSLIFRvengapggssgevkkrsrkstpqkldgphkcehcEKEFENRRALkrheknhtqektfpctVCLKMFKTKAQREEHIashvtdsefkcdqcPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIakhgaqpyqcETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNmlssdplpellikass
Low Complexity Region (SEG)
MPKSNLTLCGVLPSLIFRVENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPELLIKASS
Disordered region (IsUnstruct)
*****LTLCGVLPSLIFRV******************************************************TFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNM***************
Disordered Region (DISOPRED)
MPKSNLTLCGVLPSLIFRVENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLP********
Disordered Region (DISEMBL)
MPKSNLTLCGVLPSLIFRVENGA*************************CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPELLIKASS
Disordered Region (DISPRO)
****NLTLCGVLPSLIFRVENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPELLIKAS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKSNLTLCGVLPSLIFRVENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMLSSDPLPELLIKASS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	345	2.2.26 [Sep-21-2011]
Q02525	718	Zinc finger protein 39 OS	yes	N/A	0.452	0.217	0.339	2e-20
Q9UJU3	913	Zinc finger protein 112 O	yes	N/A	0.524	0.198	0.331	4e-20
C9JN71	531	Zinc finger protein 878 O	no	N/A	0.455	0.295	0.35	5e-20
Q6ZMW2	699	Zinc finger protein 782 O	no	N/A	0.446	0.220	0.337	2e-19
D3ZUU2	707	GDNF-inducible zinc finge	no	N/A	0.440	0.214	0.341	2e-19
Q4VBD9	706	GDNF-inducible zinc finge	no	N/A	0.434	0.212	0.346	2e-19
Q68DY1	528	Zinc finger protein 626 O	no	N/A	0.437	0.285	0.376	3e-19
A6NK53	670	Zinc finger protein 233 O	no	N/A	0.446	0.229	0.312	4e-19
Q8TF45	676	Zinc finger protein 418 O	no	N/A	0.460	0.235	0.339	4e-19
Q96SQ5	575	Zinc finger protein 587 O	no	N/A	0.588	0.353	0.308	5e-19

>sp|Q02525|ZFP39_MOUSE Zinc finger protein 39 OS=Mus musculus GN=Zfp39 PE=2 SV=2

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 80/159 (50%), Gaps = 3/159 (1%)

Query: 44  DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
           D P++CE C+K F  +  L  H+K HT EK + C VC K F  ++    H  +H     +
Sbjct: 518 DKPYECEECQKAFSRKSNLTVHQKTHTGEKPYECNVCGKTFHRQSHLNMHQGTHTGQKPY 577

Query: 104 KCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCET 163
           +C++C     +   LR H + H       CE C++ F  +  L  H  +  G +PY CE 
Sbjct: 578 QCEECGKAFYQKSSLRRHQRNHTGSRPYACEECRKTFLHKSSLTVHQRSHTGYKPYSCEE 637

Query: 164 CRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK 202
           CRK F SK  L  H + H   +    Y+C+LC K+F+ K
Sbjct: 638 CRKTFYSKSHLTVHQRTHTGEKP---YECKLCKKAFHQK 673

A putative DNA-binding regulatory protein associated with meiosis in spermatogenesis.
Mus musculus (taxid: 10090)

>sp|Q9UJU3|ZN112_HUMAN Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 6/187 (3%)

Query: 18  RVENGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
           R E+G     S ++K   R  T QK   P+KC  C K F +R  L  H++ HT EK + C
Sbjct: 499 RKEHGNGFNWSSKLKDHQRVHTGQK---PYKCNICGKGFNHRSVLNVHQRVHTGEKPYKC 555

Query: 78  TVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQ 137
             C K F   +  + H   H  +  +KC++C     R  YL+ H + H  E    CE C 
Sbjct: 556 EECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECG 615

Query: 138 EGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGK 197
           +GF     L+ H     G +P++CE C K F   ++L  H + H   +    Y+CE CGK
Sbjct: 616 KGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKP---YKCEECGK 672

Query: 198 SFNNKQT 204
            F+   T
Sbjct: 673 GFSKAST 679

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|C9JN71|ZN878_HUMAN Zinc finger protein 878 OS=Homo sapiens GN=ZNF878 PE=3 SV=2

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 3/160 (1%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           PHKC  C K F +  +LKRHEK+HT EK + C  C K F   +  + H  +H  +  ++C
Sbjct: 226 PHKCNICGKAFFSPSSLKRHEKSHTGEKRYKCKQCDKAFNCPSSFQYHERTHSGEKPYEC 285

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
            QC    + +KYLR H +KH  E    C+ C +GF S      H     G +PY+C+ C 
Sbjct: 286 TQCRKAFRSVKYLRVHERKHTGEKPYECKLCGKGFISSTSFRYHEKTHTGEKPYECKKCV 345

Query: 166 KLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF 205
           K F     L  H + H   +    ++C+ CGK+F +  +F
Sbjct: 346 KAFSFVKDLRIHERTHTGEKP---FECKQCGKTFTSSNSF 382

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q6ZMW2|ZN782_HUMAN Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 3/157 (1%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           P +C  C K F +   L+ H + HT E+ + C  C K FK K+   +H  +H  +  +KC
Sbjct: 477 PFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKC 536

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
           +QC     +   LR H + H  E    C  C E F  +  L  H+    G +PYQCE C 
Sbjct: 537 NQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTHTGEKPYQCEECG 596

Query: 166 KLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK 202
           K F  K +L  H + H   +    Y+C  CGK+F+ K
Sbjct: 597 KTFRQKSNLRGHQRTHTGEKP---YECNECGKAFSEK 630

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|D3ZUU2|GZF1_RAT GDNF-inducible zinc finger protein 1 OS=Rattus norvegicus GN=Gzf1 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 47  HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD 106
           H+C  C K   ++ AL+ HE+ HT +K + CT C   F   +  + H+  H  +  F CD
Sbjct: 406 HRCGQCGKGLSSKTALRLHERTHTGDKPYGCTKCDAKFSQPSALKTHLRVHTGERPFVCD 465

Query: 107 QCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRK 166
           +C     +   L YH + H  E    CE C + F S++ L+ HN    G++P++CE C +
Sbjct: 466 ECGARFTQNHMLIYHKRCHTGERPFMCETCGKSFASKEYLKHHNRIHTGSKPFKCEVCLR 525

Query: 167 LFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNN 201
            F  + SL+ H K H    ER  Y C+ CGK F  
Sbjct: 526 TFAQRNSLYQHIKVH--TGERP-YCCDQCGKQFTQ 557

Transcriptional repressor. Binds the GZF1 responsive element (GRE) (consensus: 5'-TGCGCN[TG][CA]TATA-3'). May be regulating VSX2/HOX10 expression.

Rattus norvegicus (taxid: 10116)

>sp|Q4VBD9|GZF1_MOUSE GDNF-inducible zinc finger protein 1 OS=Mus musculus GN=Gzf1 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 47  HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD 106
           H+C  C K   ++ AL+ HE+ HT +K + CT C   F   +  + H+  H  +  F CD
Sbjct: 405 HRCGQCGKGLSSKTALRLHERTHTGDKPYGCTKCDAKFSQPSALKTHLRVHTGERPFVCD 464

Query: 107 QCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRK 166
           +C     +   L YH + H  E    CE C + F S++ L+ HN    G++P++CE C +
Sbjct: 465 ECGARFTQNHMLIYHKRCHTGERPFMCETCGKSFASKEYLKHHNRIHTGSKPFKCEVCLR 524

Query: 167 LFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF 199
            F  + SL+ H K H    ER  Y C+ CGK F
Sbjct: 525 TFAQRNSLYQHIKVH--TGERP-YCCDQCGKQF 554

Transcriptional repressor. Binds the GZF1 responsive element (GRE) (consensus: 5'-TGCGCN[TG][CA]TATA-3'). May be regulating VSX2/HOX10 expression.

Mus musculus (taxid: 10090)

>sp|Q68DY1|ZN626_HUMAN Zinc finger protein 626 OS=Homo sapiens GN=ZNF626 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 77/154 (50%), Gaps = 3/154 (1%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           P+KCE C K F +  +L RH+K HT EK + C  C K FK  +    H  +H  +  +KC
Sbjct: 200 PYKCEECGKAFNHSCSLTRHKKIHTGEKPYKCEECGKAFKHSSTLTTHKRNHTGEKPYKC 259

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
           D+C         L  H   H ++    CE C + F     L TH I   G +PY+CE C 
Sbjct: 260 DKCGKAFMSSSTLSKHEIIHTEKKPYKCEECGKAFNRSSTLTTHKIIHTGEKPYKCEECD 319

Query: 166 KLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF 199
           K F   Y+L TH + H    E   Y+CE CGK+F
Sbjct: 320 KAFKYSYTLTTHKRIHT---EDKPYKCEECGKAF 350

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|A6NK53|ZN233_HUMAN Zinc finger protein 233 OS=Homo sapiens GN=ZNF233 PE=2 SV=3

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 81/179 (45%), Gaps = 25/179 (13%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           P+KCE C+K F     L+ H++ HT EK + C VC K F   +  + H   H  +  +KC
Sbjct: 451 PYKCEVCDKGFSKASNLQAHQRIHTGEKPYKCDVCDKNFSRNSHLQAHQRVHTGEKPYKC 510

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
           D C     +I +L+ H + H+ E    CE C +GF     L+ H     G  PY+C+ C 
Sbjct: 511 DTCGKDFSQISHLQAHQRVHKGEKPYKCETCGKGFSQSSHLQDHQQVHTGENPYKCDVCG 570

Query: 166 KLFLSKYSLFTHNKKH--------------------LPIEERLH-----YQCELCGKSF 199
           K F     L  H + H                    L + +R+H     Y+C +CGKSF
Sbjct: 571 KGFSWSSHLQAHQRVHTGEKPYKCEECRKGFIWNSYLHVHQRIHTGEKPYKCGMCGKSF 629

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q8TF45|ZN418_HUMAN Zinc finger protein 418 OS=Homo sapiens GN=ZNF418 PE=1 SV=2

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           P++CE C K F  +  L +H++ HT E+ + C  C K F  K    EH   H  +  ++C
Sbjct: 341 PYECEECGKCFTQKGNLIQHQRGHTSERPYECEECGKCFSQKGTLTEHHRVHTRERPYEC 400

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
            +C     R  +LR H + H  E    C  C + F  +  L  H  +  G +PY+C  CR
Sbjct: 401 GECGKSFSRKGHLRNHQRGHTGERPYECGECGKSFSRKGNLIQHQRSHTGERPYECRECR 460

Query: 166 KLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSL 207
           KLF  K  L  H + H    ER  Y+C  CGKSF +   F +
Sbjct: 461 KLFRGKSHLIEHQRVH--TGERP-YECNECGKSFQDSSGFRV 499

Transcriptional repressor.

Homo sapiens (taxid: 9606)

>sp|Q96SQ5|ZN587_HUMAN Zinc finger protein 587 OS=Homo sapiens GN=ZNF587 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 8/211 (3%)

Query: 44  DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
           +GP++C  C K F  +  L +H++ HT E+ + C  C K F+ K     H   H  +  +
Sbjct: 321 EGPYECRECGKSFGQKGNLIQHQQGHTGERAYHCGECGKSFRQKFCFINHQRVHTGERPY 380

Query: 104 KCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCET 163
           KC +C     +   L +H + H  E    C+ C + F  R  L  H     G +PY C  
Sbjct: 381 KCGECGKSFGQKGNLVHHQRGHTGERPYECKECGKSFRYRSHLTEHQRLHTGERPYNCRE 440

Query: 164 CRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSS 223
           C KLF  KY L  H + H    ER  Y CE+CGK F NK + ++ +  + +    Y  S 
Sbjct: 441 CGKLFNRKYHLLVHERVH--TGERP-YACEVCGKLFGNKHSVTI-HQRIHTGERPYECSE 496

Query: 224 SNMYVLSLSNMYVLSLSKVRLNSSSNMYVLS 254
                LS S ++V      R++S    Y  S
Sbjct: 497 CGKSFLSSSALHVHK----RVHSGQKPYKCS 523

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
328715760	372	PREDICTED: zinc finger protein 502-like	0.492	0.456	0.385	7e-28
395517279	1273	PREDICTED: zinc finger protein 91-like [	0.457	0.124	0.35	5e-23
260832426	302	hypothetical protein BRAFLDRAFT_88443 [B	0.376	0.430	0.546	9e-23
395507704	3385	PREDICTED: uncharacterized protein LOC10	0.455	0.046	0.325	8e-22
319996747	1146	zinc finger and BTB domain-containing pr	0.455	0.136	0.355	1e-21
242008211	1219	zinc finger protein, putative [Pediculus	0.446	0.126	0.337	2e-21
334324890	1109	PREDICTED: zinc finger protein 135-like	0.501	0.155	0.327	3e-21
444526161	506	Zinc finger protein 182 [Tupaia chinensi	0.452	0.308	0.371	3e-21
334347870	1907	PREDICTED: zinc finger protein 850-like	0.495	0.089	0.316	5e-21
47218039	1038	unnamed protein product [Tetraodon nigro	0.455	0.151	0.318	6e-21

>gi|328715760|ref|XP_001948978.2| PREDICTED: zinc finger protein 502-like [Acyrthosiphon pisum]

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 95/171 (55%), Gaps = 1/171 (0%)

Query: 30  EVKKRSRKSTPQKLDGPH-KCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKA 88
           + ++  R  TP+K+     KC  CE+ F  + ALK H+ +      + C  C K F T  
Sbjct: 59  DDQRSDRTKTPRKVKIKFFKCRKCEESFNTKHALKDHQNDAHPHSAYKCNCCDKTFDTMC 118

Query: 89  QREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLET 148
            R++H         + CD C Y       ++YH  +H+K YS +C+ CQ GFF++D+L T
Sbjct: 119 ARQKHKKEEHPSVTYSCDTCDYRTPYKSRMQYHENRHKKVYSVFCDTCQAGFFNKDELAT 178

Query: 149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF 199
           H I  HGA+PYQC+ C KL  SK +L++H K H    E + YQCE CGK+F
Sbjct: 179 HEIKNHGAEPYQCDRCSKLCTSKTNLYSHMKVHTTSAESVSYQCETCGKAF 229

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395517279|ref|XP_003762805.1| PREDICTED: zinc finger protein 91-like [Sarcophilus harrisii]

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 2/160 (1%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           P++C  C K F + R+L +H++ HT+EK + C  C K F+ +     H+A H  +  +KC
Sbjct: 623 PYECNQCGKGFTDNRSLSQHQRIHTEEKPYACYQCGKAFRQRGALTAHVAIHTGEKPYKC 682

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
           +QC    +    L  H + H  E +  C  C + F  R  L  H     G +PY+C  CR
Sbjct: 683 NQCGKTFRYRGGLTAHQRIHTGEKAYQCNQCGKAFRQRGALTVHQRIHTGEKPYECNQCR 742

Query: 166 KLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF 205
           K F  K SL  H K H    E   Y+C+ CGK+F  K T 
Sbjct: 743 KTFGYKKSLIVHQKIH--TGESNLYECKQCGKAFTKKGTL 780

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260832426|ref|XP_002611158.1| hypothetical protein BRAFLDRAFT_88443 [Branchiostoma floridae] gi|229296529|gb|EEN67168.1| hypothetical protein BRAFLDRAFT_88443 [Branchiostoma floridae]

 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/130 (54%), Positives = 90/130 (69%)

Query: 200 NNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMY 259
           ++     LS+ YVL LS+ YVL  S+ YVL LS+ +VL LS   +   S+ YVL LS+ Y
Sbjct: 71  SDAHVLYLSDAYVLYLSDAYVLYLSDAYVLYLSDAFVLYLSDAYVLYLSDAYVLYLSDAY 130

Query: 260 VLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSL 319
           VL LS+ YVL LS+ YVL LS+ YVL LS+ YVL LS+ YVL LS+ YVL LS+ YVL L
Sbjct: 131 VLYLSDTYVLYLSDAYVLYLSDAYVLYLSDAYVLYLSDAYVLYLSDAYVLYLSDAYVLYL 190

Query: 320 SNMYVLSLSN 329
           S+ YVL LS+
Sbjct: 191 SDAYVLYLSD 200

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395507704|ref|XP_003758161.1| PREDICTED: uncharacterized protein LOC100930147 [Sarcophilus harrisii]

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 3/160 (1%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           P++C+ C K F +  +L RH++ HT EK + C+VC K+F + +  + H  +H  +  ++C
Sbjct: 543 PYECDECGKAFFDCSSLTRHQRTHTGEKPYLCSVCGKVFSSHSNIKVHQITHTGERPYEC 602

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
           ++C         L  H + H  E    C+ C + FF R  L  H     G +PY+C+ CR
Sbjct: 603 NECGKAFFDCSSLTIHERIHTGEKPYECDECGKAFFDRSHLNRHQRIHTGEKPYECDQCR 662

Query: 166 KLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF 205
           K F  + SL  H K H    +   Y+C  CGK+F  K+  
Sbjct: 663 KAFFDRSSLTQHQKIH---SKEKPYECSQCGKTFIQKRNL 699

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|319996747|ref|NP_997815.2| zinc finger and BTB domain-containing protein 11 [Danio rerio]

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 80/163 (49%), Gaps = 6/163 (3%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           PH C+ C K F  + +LK H   H   K F CTVC K F TK   EEH + H  +S++ C
Sbjct: 770 PHSCKVCGKSFATKHSLKMHRALHDSLKRFHCTVCEKSFVTKRSLEEHTSIHTGESKYLC 829

Query: 106 DQCPYVAKRIKYLRYHMKKHRKE---YSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCE 162
             C     R   L  H+KKH+ +    S +C  C + FF    L+ H     G +P+QC+
Sbjct: 830 TTCGASFHRASGLSKHLKKHQPKPEVRSFHCSHCDKSFFEAKDLQQHMNKHLGLKPFQCQ 889

Query: 163 TCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF 205
            C K +  K   ++H K H   E    ++C +CGK F  K  F
Sbjct: 890 VCGKCYSWKKDWYSHVKSHSVAEP---FRCNVCGKEFFEKALF 929

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242008211|ref|XP_002424904.1| zinc finger protein, putative [Pediculus humanus corporis] gi|212508484|gb|EEB12166.1| zinc finger protein, putative [Pediculus humanus corporis]

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 3/157 (1%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           PHKC++C KEF  +  L  H + HT E  + CT C K F  K    EH+  H  ++ +KC
Sbjct: 742 PHKCQYCSKEFARKDHLTNHVRQHTGETPYRCTYCPKAFTRKDHLNEHVRQHTGETPYKC 801

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
             CP    R  +L  H+++H  E    C+ C + F  +D L  H     G  P++CE C 
Sbjct: 802 QYCPKEFSRKDHLNNHVRQHTGETPFKCQYCPKEFSRKDHLTNHIRQHTGETPFKCEYCP 861

Query: 166 KLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK 202
           K F  K  L  H ++H        ++C+ C K+F+ K
Sbjct: 862 KCFTRKDHLTNHTRQH---TGETPFKCQYCPKAFSRK 895

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|334324890|ref|XP_001374319.2| PREDICTED: zinc finger protein 135-like [Monodelphis domestica]

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 7/180 (3%)

Query: 29  GEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKA 88
           G++    R  T +K   P++C  C K F  R +L  H+K HT EK F C  C K F  KA
Sbjct: 606 GKLTVHQRIHTGEK---PYECNQCGKAFIQRASLTVHQKIHTGEKPFKCNQCGKAFIQKA 662

Query: 89  QREEHIASHVTDSEFKCDQC-PYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLE 147
               H   H  +  FKC+QC     ++  YL  H + H  E    C  C + F  R +L 
Sbjct: 663 TLTAHQRIHTGEKPFKCNQCGKAFIQKATYLTVHQRIHTGEKPYQCNLCGKAFIRRHRLT 722

Query: 148 THNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSL 207
            H     G +PY+C  C K F  K  L  H + H        Y+C  CGK+F  + + ++
Sbjct: 723 VHQRIHTGEKPYECNQCGKAFTQKSGLTIHQRSH---TREKPYECNQCGKAFIQRASLTV 779

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444526161|gb|ELV14277.1| Zinc finger protein 182 [Tupaia chinensis]

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 84/159 (52%), Gaps = 3/159 (1%)

Query: 44  DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
           + P+ CE C K F ++  L  H + HT EK + C  C K F  K+   +H   H     +
Sbjct: 195 EKPYACEQCRKAFSSKGYLTVHRRTHTGEKPYECEQCRKRFSQKSSLTQHQRIHTGGKRY 254

Query: 104 KCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCET 163
           +C+ C        YL  H + H  E +  CEPC++ FFS+  L  HN    G +PY+CE 
Sbjct: 255 ECEHCAKTFSSKGYLTVHKRTHTGEKTYECEPCRKTFFSKGHLTVHNKTHIGEKPYECEQ 314

Query: 164 CRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK 202
           CRK+F  K  L  H + H    E+L Y+CE CGK+F++K
Sbjct: 315 CRKMFSRKSHLIAHQRTHTG--EKL-YECEQCGKAFSSK 350

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334347870|ref|XP_003341991.1| PREDICTED: zinc finger protein 850-like [Monodelphis domestica]

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 33  KRSRKSTPQKL---DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQ 89
           KRS  +  Q++   + P++C+ C K F  R  L RH++ HT+EK F C  C K F   + 
Sbjct: 633 KRSSLAVHQRIHTGEKPYECKQCGKAFRTRSHLVRHQRIHTREKPFECKQCGKAFIDSSS 692

Query: 90  REEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETH 149
             +H   H  +  +KC  C    ++   L  H + H +E    C+ C + F  R  L TH
Sbjct: 693 LTKHQRIHTGEKPYKCKHCGKAVRQRSTLIVHQRIHTREKPYKCKQCGKTFTKRSHLSTH 752

Query: 150 NIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS 206
                G +PY+C+ C K F ++  L  H + H   +    Y+C+ CGK F  K +F+
Sbjct: 753 QRIHSGEKPYECKQCGKAFTTRSHLVRHQRIHTGEKP---YECKQCGKIFKWKGSFT 806

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47218039|emb|CAG11444.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 3/160 (1%)

Query: 47  HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD 106
           H C HC + F+     + H K+H   K F CTVC K F T    ++H+  HV++  +KC 
Sbjct: 444 HTCPHCNRSFKGLNYFRCHVKSHLGYKPFRCTVCEKEFLTGYLLKKHMEIHVSERRYKCG 503

Query: 107 QCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRK 166
           +C  + K I ++R HM+ H  E   +C+ C +G+ +++ L+ H       +PY C+ C K
Sbjct: 504 ECGKLYKTIGHVREHMRAHSDERPYHCDRCNKGYKTKNALQVHQRTHGDEKPYVCQYCMK 563

Query: 167 LFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS 206
            F  K SL  H + H   +    ++C  CG++F    T +
Sbjct: 564 GFREKGSLVRHVRHHTGEKP---FKCPKCGRAFAEHGTLN 600

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
MGI|MGI:99183	718	Zfp39 "zinc finger protein 39"	0.452	0.217	0.345	3.6e-28
UNIPROTKB|D4A5T4	717	Zfp39 "Protein Zfp39" [Rattus	0.463	0.223	0.337	1.4e-26
ZFIN|ZDB-GENE-120214-29	518	si:ch73-367f21.5 "si:ch73-367f	0.533	0.355	0.356	2.4e-26
UNIPROTKB|C9JN71	531	ZNF878 "Zinc finger protein 87	0.455	0.295	0.356	1.2e-25
UNIPROTKB|E1BBI5	1052	ZBTB11 "Uncharacterized protei	0.452	0.148	0.359	1.9e-25
UNIPROTKB|F1SL18	1052	ZBTB11 "Uncharacterized protei	0.452	0.148	0.359	1.9e-25
UNIPROTKB|F1MBW2	744	F1MBW2 "Uncharacterized protei	0.536	0.248	0.333	2e-25
UNIPROTKB|B1AKS7	420	ZNF25 "Zinc finger protein 25"	0.443	0.364	0.360	2.9e-25
UNIPROTKB|E2RJK6	1054	ZBTB11 "Uncharacterized protei	0.452	0.148	0.359	3.1e-25
RGD|1642422	500	LOC100125368 "zinc finger prot	0.481	0.332	0.344	3.4e-25

MGI|MGI:99183 Zfp39 "zinc finger protein 39" [Mus musculus (taxid:10090)]

 Score = 294 (108.6 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
 Identities = 55/159 (34%), Positives = 81/159 (50%)

Query:    44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
             D P++CE C+K F  +  L  H+K HT EK + C VC K F  ++    H  +H     +
Sbjct:   518 DKPYECEECQKAFSRKSNLTVHQKTHTGEKPYECNVCGKTFHRQSHLNMHQGTHTGQKPY 577

Query:   104 KCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCET 163
             +C++C     +   LR H + H       CE C++ F  +  L  H  +  G +PY CE 
Sbjct:   578 QCEECGKAFYQKSSLRRHQRNHTGSRPYACEECRKTFLHKSSLTVHQRSHTGYKPYSCEE 637

Query:   164 CRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK 202
             CRK F SK  L  H + H    E+  Y+C+LC K+F+ K
Sbjct:   638 CRKTFYSKSHLTVHQRTHTG--EK-PYECKLCKKAFHQK 673

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|D4A5T4 Zfp39 "Protein Zfp39" [Rattus norvegicus (taxid:10116)]

 Score = 286 (105.7 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
 Identities = 55/163 (33%), Positives = 81/163 (49%)

Query:    44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
             D P++C+ C+K F  +  L  H+K HT EK + C VC K F  ++    H   H  +  +
Sbjct:   519 DKPYECQECQKTFNRKSNLTVHQKTHTGEKPYECDVCGKTFHRQSHLSMHQGIHSGEKPY 578

Query:   104 KCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCET 163
             KC +C     +   L  H + H  +    CE C++ F  +  L  H  +  G +PY CE 
Sbjct:   579 KCKECGKAFYQKSSLSRHQRNHTGDRPYACEECRKTFLHKSSLTVHQRSHTGYKPYSCEE 638

Query:   164 CRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS 206
             CRK F SK  L  H + H    E+  Y+C+LC K+F+ K   S
Sbjct:   639 CRKTFYSKSHLTVHQRTHTG--EK-PYECKLCRKAFHQKSYLS 678

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-120214-29 si:ch73-367f21.5 "si:ch73-367f21.5" [Danio rerio (taxid:7955)]

 Score = 302 (111.4 bits), Expect = 2.4e-26, P = 2.4e-26
 Identities = 67/188 (35%), Positives = 92/188 (48%)

Query:    25 GGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
             G S  E KK +        + P  C HC K F  ++ L+ H + HT EK + C  C K +
Sbjct:   264 GKSFSENKKLTSHMRIHTGEKPFVCSHCGKRFRGKQNLESHIRLHTGEKRYTCPQCGKSY 323

Query:    85 KTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRD 144
               +   E HI SH  +  F CDQC    ++ + L+ H++ H  E    C  C + F  + 
Sbjct:   324 NEQKSLENHIRSHTGEKPFACDQCGKSFRQQRILKGHIRIHTGEKPFTCPQCGKSFIEKT 383

Query:   145 KLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQT 204
             KLE H     G +PY C  C+K F  K SL  H + H    E+L Y C+ CGKSF  KQ 
Sbjct:   384 KLERHKKIHSGEKPYTCHHCKKSFTMKQSLDIHMRIHTG--EKL-YTCQQCGKSFALKQR 440

Query:   205 FSLSNMYV 212
               +S+M V
Sbjct:   441 L-ISHMKV 447

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|C9JN71 ZNF878 "Zinc finger protein 878" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 57/160 (35%), Positives = 83/160 (51%)

Query:    46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
             PHKC  C K F +  +LKRHEK+HT EK + C  C K F   +  + H  +H  +  ++C
Sbjct:   226 PHKCNICGKAFFSPSSLKRHEKSHTGEKRYKCKQCDKAFNCPSSFQYHERTHSGEKPYEC 285

Query:   106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
              QC    + +KYLR H +KH  E    C+ C +GF S      H     G +PY+C+ C 
Sbjct:   286 TQCRKAFRSVKYLRVHERKHTGEKPYECKLCGKGFISSTSFRYHEKTHTGEKPYECKKCV 345

Query:   166 KLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF 205
             K F     L  H + H    E+  ++C+ CGK+F +  +F
Sbjct:   346 KAFSFVKDLRIHERTHTG--EK-PFECKQCGKTFTSSNSF 382

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BBI5 ZBTB11 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 289 (106.8 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
 Identities = 59/164 (35%), Positives = 84/164 (51%)

Query:    46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
             PH C+ C K F  +  LK H+  H  +K F C +C+K F TK   +EH++ H  +S++ C
Sbjct:   677 PHACQVCGKTFIYKHGLKLHQSLHQSQKQFQCELCVKSFVTKRSLQEHMSIHTGESKYLC 736

Query:   106 DQCPYVAKRIKYLRYHMKKH--RKEYSAY-CEPCQEGFFSRDKLETHNIAKH-GAQPYQC 161
               C     R   L  H+KKH  + E   Y C  C++ FF    L  H + KH G +P+QC
Sbjct:   737 SVCGKSFHRGSGLSKHLKKHQPKPEVRGYHCTQCEKSFFEARDLRQH-MNKHLGVKPFQC 795

Query:   162 ETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF 205
             + C K +  K   ++H K H   E    Y+C +CGK F  K  F
Sbjct:   796 QFCDKCYSWKKDWYSHVKSHSVTEP---YRCNICGKEFYEKALF 836

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SL18 ZBTB11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
 Identities = 59/164 (35%), Positives = 84/164 (51%)

Query:    46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
             PH C+ C K F  +  LK H+  H  +K F C +C+K F TK   +EH++ H  +S++ C
Sbjct:   677 PHACQVCGKTFIYKHGLKLHQSLHQSQKQFQCELCVKSFVTKRSLQEHMSIHTGESKYLC 736

Query:   106 DQCPYVAKRIKYLRYHMKKH--RKEYSAY-CEPCQEGFFSRDKLETHNIAKH-GAQPYQC 161
               C     R   L  H+KKH  + E   Y C  C++ FF    L  H + KH G +P+QC
Sbjct:   737 SVCGKSFHRGSGLSKHLKKHQPKPEVRGYHCTQCEKSFFEARDLRQH-MNKHLGVKPFQC 795

Query:   162 ETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF 205
             + C K +  K   ++H K H   E    Y+C +CGK F  K  F
Sbjct:   796 QFCDKCYSWKKDWYSHVKSHSVTEP---YRCNICGKEFYEKALF 836

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MBW2 F1MBW2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 63/189 (33%), Positives = 89/189 (47%)

Query:    46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
             P++C  C K F NR  L RH++ HT EK + C  C K F   +  + H   H+ +  + C
Sbjct:   300 PYECTECGKSFNNRWTLIRHQRIHTGEKPYVCNKCGKSFSCSSTLQYHERGHLGERPYGC 359

Query:   106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
             D+C         LRYH + H  E    C  C + F S+  L  H     G +PY+C  C 
Sbjct:   360 DECGRSFTTSSALRYHQRIHTGERPYECNECGKSFISKSDLHYHQRVHSGERPYECSECG 419

Query:   166 KLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSN 225
             K F+ + +L  H + H    ER  Y+C  CGKSFNN+ T  + +  V +    YV S   
Sbjct:   420 KSFIRRNNLLLHQRVHTG--ER-PYKCSECGKSFNNRWTL-IQHQRVHTGEKPYVCSECG 475

Query:   226 MYVLSLSNM 234
                 S S +
Sbjct:   476 KSFTSSSTL 484

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|B1AKS7 ZNF25 "Zinc finger protein 25" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 57/158 (36%), Positives = 83/158 (52%)

Query:    46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
             P++C  CEK F  +  L  H+K HT EK F CT C K F  KA    H  +H  +  ++C
Sbjct:   165 PYECNQCEKSFYQKPHLTEHQKTHTGEKPFECTECGKFFYVKAYLMVHQKTHTGEKPYEC 224

Query:   106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDK-LETHNIAKHGAQPYQCETC 164
              +C     +  +L  H + H  E    C+ C + FFSR+  L+TH  +  G +PY+C+ C
Sbjct:   225 KECGKAFSQKSHLTVHQRMHTGEKPYKCKECGK-FFSRNSHLKTHQRSHTGEKPYECKEC 283

Query:   165 RKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK 202
             RK F  K +L  H + H    E+  ++C  CGK+F  K
Sbjct:   284 RKCFYQKSALTVHQRTHTG--EK-PFECNKCGKTFYYK 318

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RJK6 ZBTB11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 289 (106.8 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
 Identities = 59/164 (35%), Positives = 84/164 (51%)

Query:    46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
             PH C+ C K F  +  LK H+  H  +K F C +C+K F TK   +EH++ H  +S++ C
Sbjct:   679 PHACQVCGKTFIYKHGLKLHQSLHQSQKQFQCELCVKSFVTKRSLQEHMSIHTGESKYLC 738

Query:   106 DQCPYVAKRIKYLRYHMKKH--RKEYSAY-CEPCQEGFFSRDKLETHNIAKH-GAQPYQC 161
               C     R   L  H+KKH  + E   Y C  C++ FF    L  H + KH G +P+QC
Sbjct:   739 SVCGKSFHRGSGLSKHLKKHQPKPEVRGYHCTQCEKSFFEARDLRQH-MNKHLGVKPFQC 797

Query:   162 ETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF 205
             + C K +  K   ++H K H   E    Y+C +CGK F  K  F
Sbjct:   798 QFCDKCYSWKKDWYSHVKSHSVTEP---YRCNICGKEFYEKALF 838

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|1642422 LOC100125368 "zinc finger protein LOC100125368" [Rattus norvegicus (taxid:10116)]

 Score = 291 (107.5 bits), Expect = 3.4e-25, P = 3.4e-25
 Identities = 60/174 (34%), Positives = 90/174 (51%)

Query:    36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIA 95
             R +T +K   P+KC  C K F N R+L++HEKNHT+EK + C+ C K F +++  + H  
Sbjct:    97 RINTEEK---PYKCSQCSKAFANFRSLQKHEKNHTREKPYECSHCGKAFPSRSSLQIHER 153

Query:    96 SHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHG 155
             +H  +  F C +C     R   L  H + H  E    C  C + F +R  L+ H I   G
Sbjct:   154 THTGEKPFDCSECGKAFARHSNLDIHKRTHTGEKPYDCNECGKAFSTRSHLQIHEILHTG 213

Query:   156 AQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSN 209
              +PY C  C K F  + +L  H+K H    E+  Y+C  CG ++ ++   SL N
Sbjct:   214 EKPYVCNQCGKAFAYRSNLEAHDKTHTG--EK-PYECNQCGNAYASRS--SLRN 262

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	345
pfam13465	26	pfam13465, zf-H2C2_2, Zinc-finger double domain	2e-04

>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 61 ALKRHEKNHTQEKTFPCTVCLKMFKT 86
           L+RH + HT EK + C VC K F +
Sbjct: 1  NLRRHMRTHTGEKPYKCPVCGKSFSS 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
KOG2462|consensus	279		99.93
KOG2462|consensus	279		99.93
KOG3608|consensus	467		99.84
KOG1074|consensus	958		99.82
KOG3608|consensus	467		99.81
KOG1074|consensus	958		99.78
KOG3576|consensus	267		99.67
KOG3576|consensus	267		99.64
PLN03086	567	PRLI-interacting factor K; Provisional	99.45
KOG3623|consensus	1007		99.45
KOG3623|consensus	1007		99.43
PLN03086	567	PRLI-interacting factor K; Provisional	99.16
PHA00733	128	hypothetical protein	99.11
KOG3993|consensus	500		98.92
PHA00733	128	hypothetical protein	98.9
PHA02768	55	hypothetical protein; Provisional	98.65
PHA02768	55	hypothetical protein; Provisional	98.56
KOG3993|consensus	500		98.5
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.23
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.18
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.15
PHA00616	44	hypothetical protein	98.07
PHA00732	79	hypothetical protein	98.02
PHA00616	44	hypothetical protein	98.0
PHA00732	79	hypothetical protein	97.86
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.68
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.64
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.63
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.57
KOG2231|consensus	669		97.45
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.41
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.37
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.33
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.17
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.08
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.82
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.82
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.81
KOG2231|consensus	669		96.79
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.55
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.4
smart00355	26	ZnF_C2H2 zinc finger.	96.17
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.0
COG5048	467	FOG: Zn-finger [General function prediction only]	95.97
smart00355	26	ZnF_C2H2 zinc finger.	95.95
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.82
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.75
KOG1146|consensus	1406		95.39
PRK04860	160	hypothetical protein; Provisional	95.25
KOG2785|consensus	390		94.89
KOG1146|consensus	1406		94.89
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.85
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.72
PRK04860	160	hypothetical protein; Provisional	94.7
COG5048	467	FOG: Zn-finger [General function prediction only]	94.65
KOG2785|consensus	390		94.64
KOG2482|consensus	423		93.98
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.77
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.68
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	92.59
KOG2482|consensus	423		92.44
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	91.92
KOG4173|consensus	253		91.32
KOG4173|consensus	253		91.07
KOG2893|consensus	341		91.07
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	90.95
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	90.65
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	90.21
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	90.02
KOG2893|consensus	341		89.05
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	88.81
COG4049	65	Uncharacterized protein containing archaeal-type C	88.52
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	86.04
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.17
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	83.8
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	83.7
KOG2186|consensus	276		81.33
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	81.22
COG4049	65	Uncharacterized protein containing archaeal-type C	81.1

>KOG2462|consensus

Probab=99.93  E-value=1.3e-26  Score=207.04  Aligned_cols=132  Identities=27%  Similarity=0.527  Sum_probs=66.2

Q ss_pred             eeccccccccCCHHHHHHHHHhcCC---CCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHH
Q psy4572          75 FPCTVCLKMFKTKAQREEHIASHVT---DSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNI  151 (345)
Q Consensus        75 ~~C~~C~k~F~~~~~L~~H~~~h~~---~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~  151 (345)
                      |+|+.||+.+.+..+|.+|.++|..   .+.+.|+.|++.+.+...|+.|+++|.  -+++|.+|||.|....-|+.|+|
T Consensus       131 ~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiR  208 (279)
T KOG2462|consen  131 YKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIR  208 (279)
T ss_pred             eeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcccc
Confidence            4444444444444444444444421   234455555555555555555555543  34455555555555555555555


Q ss_pred             HhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHH
Q psy4572         152 AKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMY  211 (345)
Q Consensus       152 ~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~  211 (345)
                      +|+|||||.|+.|+|.|.++++|+.|+++|.   +.|+|+|+.|+|.|..++.|.+|...
T Consensus       209 THTGEKPF~C~hC~kAFADRSNLRAHmQTHS---~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  209 THTGEKPFSCPHCGKAFADRSNLRAHMQTHS---DVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cccCCCCccCCcccchhcchHHHHHHHHhhc---CCccccCcchhhHHHHHHHHHHhhhh
Confidence            5555555555555555555555555555554   33345555555555555555555443

>KOG2462|consensus

Probab=99.93  E-value=1.1e-26  Score=207.64  Aligned_cols=137  Identities=27%  Similarity=0.505  Sum_probs=129.2

Q ss_pred             CCCceeccccccccCCHHHHHHHHHHcCC---CCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHH
Q psy4572          43 LDGPHKCEHCEKEFENRRALKRHEKNHTQ---EKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLR  119 (345)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~L~~H~~~h~~---~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~  119 (345)
                      ....|+|+.||+.+.+.+.|.+|.++|-.   .+.+.|+.|++.|.+...|+.|+++|.  -+++|.+||+.|.+.+-|+
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQ  204 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQ  204 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhh
Confidence            34569999999999999999999999853   467999999999999999999999986  5799999999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         120 YHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       120 ~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      .|+|+|+||+||.|+.|++.|.++++|+.|+++|.+.|+|+|+.|+|+|..++-|.+|...-
T Consensus       205 GHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  205 GHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             cccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999998753

>KOG3608|consensus

Probab=99.84  E-value=2.3e-21  Score=177.66  Aligned_cols=182  Identities=21%  Similarity=0.429  Sum_probs=131.3

Q ss_pred             cccccccCCCCCCCceeccccccccCCHHHHHHHHHHcC--CCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCc
Q psy4572          32 KKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHT--QEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCP  109 (345)
Q Consensus        32 ~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~--~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~  109 (345)
                      .++.++...+.+++...|+.||..|.++..|-.|.+..+  ...+|.|..|.+.|.+...|..|+..|..  .|+|+.|+
T Consensus       193 ~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCd  270 (467)
T KOG3608|consen  193 YRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCD  270 (467)
T ss_pred             HHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccc
Confidence            344555566666666666666666666666666655433  33466777777777777777777666643  37777777


Q ss_pred             ccccCHHHHHHHHHH-hcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcc--hhhccCCHHHHHHHHhhhCCCCc
Q psy4572         110 YVAKRIKYLRYHMKK-HRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCET--CRKLFLSKYSLFTHNKKHLPIEE  186 (345)
Q Consensus       110 ~~f~~~~~L~~H~~~-h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~--Cgk~F~s~s~L~~H~~~H~~~~~  186 (345)
                      -+....+.|..|++. |...+||+|+.|++.|.+..+|.+|...|. +..|+|+.  |..+|.+...+++|++.++....
T Consensus       271 mtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~n  349 (467)
T KOG3608|consen  271 MTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNN  349 (467)
T ss_pred             cCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCC
Confidence            777777777777663 566778888888888888888888877655 66788876  88888888888888887776556


Q ss_pred             CceeecCccccccCCHHHHHHHHHHhcCCC
Q psy4572         187 RLHYQCELCGKSFNNKQTFSLSNMYVLSLS  216 (345)
Q Consensus       187 ~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~  216 (345)
                      ..+|.|..|++.|++-.+|.+|++..|++.
T Consensus       350 p~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~  379 (467)
T KOG3608|consen  350 PILYACHCCDRFFTSGKSLSAHLMKKHGFR  379 (467)
T ss_pred             CCceeeecchhhhccchhHHHHHHHhhccc
Confidence            677888888888888888888888888753

>KOG1074|consensus

Probab=99.82  E-value=2.9e-21  Score=193.35  Aligned_cols=171  Identities=23%  Similarity=0.465  Sum_probs=148.6

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCC----CCccCC---CCcccccC
Q psy4572          42 KLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD----SEFKCD---QCPYVAKR  114 (345)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~----k~~~C~---~C~~~f~~  114 (345)
                      +...+-+|-+|.++...++.|+.|.++|+|++||+|.+||+.|+++++|+.|+..|...    -.|.|+   +|.+.|..
T Consensus       601 ~~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kftn  680 (958)
T KOG1074|consen  601 KRTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKFTN  680 (958)
T ss_pred             ccCCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcccccc
Confidence            33467899999999999999999999999999999999999999999999999988654    348899   99999999


Q ss_pred             HHHHHHHHHHhcCC-C------------ccccCCCCCCcCCHHHHHHHHHHhcCC-------------------------
Q psy4572         115 IKYLRYHMKKHRKE-Y------------SAYCEPCQEGFFSRDKLETHNIAKHGA-------------------------  156 (345)
Q Consensus       115 ~~~L~~H~~~h~~~-~------------~~~C~~C~k~F~~~~~l~~H~~~hh~~-------------------------  156 (345)
                      .-.+.+|++.|.+. .            .-+|..|.+.|.....+..++..|.+.                         
T Consensus       681 ~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~se~~~~~s~~~~~~~~~t~t~~~~~tp~~~e  760 (958)
T KOG1074|consen  681 AVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQISEQPSPESEPDEQMDERTETEELDVTPPPPE  760 (958)
T ss_pred             cccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhhccCCcccCCcccccccccccccccCCCccc
Confidence            99999999998632 1            135889999998887777776665210                         


Q ss_pred             --------------------------------------------------------------------------------
Q psy4572         157 --------------------------------------------------------------------------------  156 (345)
Q Consensus       157 --------------------------------------------------------------------------------  156 (345)
                                                                                                      
T Consensus       761 ~~~~~~~~~e~~i~~~g~te~asa~~~~vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg  840 (958)
T KOG1074|consen  761 NSCGRELEGEMAISVRGSTEEASANLDEVGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEG  840 (958)
T ss_pred             cccccccCcccccccccchhhhhcChhhhcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccccccccc
Confidence                                                                                            


Q ss_pred             -------------------------------------CCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcccccc
Q psy4572         157 -------------------------------------QPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF  199 (345)
Q Consensus       157 -------------------------------------k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F  199 (345)
                                                           ....|..||+.|.+.+.|+.|+++|+   ++|||.|..|++.|
T Consensus       841 ~~t~~n~~t~~~~~~sv~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rTHt---g~KPF~C~fC~~aF  917 (958)
T KOG1074|consen  841 LATKTNEITPEGPADSVIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRTHT---GPKPFFCHFCEEAF  917 (958)
T ss_pred             cccccccccCCCcchhhhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhcCC---CCCCccchhhhhhh
Confidence                                                 00679999999999999999999998   88899999999999


Q ss_pred             CCHHHHHHHHHHhcCC
Q psy4572         200 NNKQTFSLSNMYVLSL  215 (345)
Q Consensus       200 ~~~~~L~~H~~~~H~~  215 (345)
                      ..+.+|+.||.+|+..
T Consensus       918 ttrgnLKvHMgtH~w~  933 (958)
T KOG1074|consen  918 TTRGNLKVHMGTHMWV  933 (958)
T ss_pred             hhhhhhhhhhcccccc
Confidence            9999999999988764

>KOG3608|consensus

Probab=99.81  E-value=6e-20  Score=168.41  Aligned_cols=179  Identities=25%  Similarity=0.477  Sum_probs=158.0

Q ss_pred             eec--cccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcC--CCCCccCCCCcccccCHHHHHHHH
Q psy4572          47 HKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHV--TDSEFKCDQCPYVAKRIKYLRYHM  122 (345)
Q Consensus        47 ~~C--~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~--~~k~~~C~~C~~~f~~~~~L~~H~  122 (345)
                      +.|  .-|-+.|.++..|+.|.+.|+++|...|+.||.-|.++..|-.|.+..+  ...+|.|..|.+.|.+...|..|+
T Consensus       178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv  257 (467)
T KOG3608|consen  178 TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHV  257 (467)
T ss_pred             eeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHH
Confidence            556  4699999999999999999999999999999999999999999997643  456899999999999999999999


Q ss_pred             HHhcCCCccccCCCCCCcCCHHHHHHHHHHhc-CCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCc--ccccc
Q psy4572         123 KKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCEL--CGKSF  199 (345)
Q Consensus       123 ~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh-~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~--Cgk~F  199 (345)
                      ..|-  ..|+|+.|+.+...+++|.+|++..| ..+||+|+.|.+.|.+.+.|.+|...|.    +..|+|+.  |..+|
T Consensus       258 ~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS----~~~y~C~h~~C~~s~  331 (467)
T KOG3608|consen  258 VRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS----KTVYQCEHPDCHYSV  331 (467)
T ss_pred             HHhh--hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc----ccceecCCCCCcHHH
Confidence            9886  46899999999999999999998755 6899999999999999999999999885    45699988  99999


Q ss_pred             CCHHHHHHHHHHhcCCCCcccccccceeeechhhHHHH
Q psy4572         200 NNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVL  237 (345)
Q Consensus       200 ~~~~~L~~H~~~~H~~~~~~~~s~~~~~~~~l~~~~~~  237 (345)
                      .+...+++|++.+|...+      ...|.|-++|++..
T Consensus       332 r~~~q~~~H~~evhEg~n------p~~Y~CH~Cdr~ft  363 (467)
T KOG3608|consen  332 RTYTQMRRHFLEVHEGNN------PILYACHCCDRFFT  363 (467)
T ss_pred             HHHHHHHHHHHHhccCCC------CCceeeecchhhhc
Confidence            999999999999994322      23566777776653

>KOG1074|consensus

Probab=99.78  E-value=4.6e-20  Score=184.79  Aligned_cols=53  Identities=40%  Similarity=0.710  Sum_probs=50.6

Q ss_pred             CceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhc
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH   97 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h   97 (345)
                      .+++|.+|.+.|...+.|+.|.|.|+|++||+|.+||..|.++.+|+.|...|
T Consensus       352 ~khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH  404 (958)
T KOG1074|consen  352 FKHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRH  404 (958)
T ss_pred             ccchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeec
Confidence            45889999999999999999999999999999999999999999999998877

>KOG3576|consensus

Probab=99.67  E-value=2.9e-17  Score=140.57  Aligned_cols=120  Identities=27%  Similarity=0.471  Sum_probs=103.9

Q ss_pred             CCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHh
Q psy4572         100 DSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNK  179 (345)
Q Consensus       100 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~  179 (345)
                      ...|.|..|++.|.-...|.+|++-|...+.+-|..||+.|.+..+|++|.++|+|.+||+|..|+|.|+.+-.|..|.+
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence            44588888888888888888898888888888899999999999999999999999999999999999999999999988


Q ss_pred             hhCCC--------CcCceeecCccccccCCHHHHHHHHHHhcCCCCcc
Q psy4572         180 KHLPI--------EERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMY  219 (345)
Q Consensus       180 ~H~~~--------~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~~~~  219 (345)
                      ..|+.        +..|.|.|+.||..-...+....|++.||..+.-+
T Consensus       195 kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spal  242 (267)
T KOG3576|consen  195 KVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPAL  242 (267)
T ss_pred             HHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCHHH
Confidence            76654        24567999999999999999999999999866543

>KOG3576|consensus

Probab=99.64  E-value=2.5e-16  Score=134.92  Aligned_cols=123  Identities=28%  Similarity=0.435  Sum_probs=90.4

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHH
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMK  123 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~  123 (345)
                      ...|.|.+|++.|.-...|.+|++-|...+.+-|..||+.|....+|++|+++|+|.+||+|..|++.|..+-.|..|.+
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~  194 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLK  194 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHH
Confidence            34588888888888888888888888888888888888888888888888888888888888888888888888888876


Q ss_pred             HhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCC
Q psy4572         124 KHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLP  183 (345)
Q Consensus       124 ~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~  183 (345)
                      .-++...            ...+     ....++-|.|+.||.+-.....+..|++.||+
T Consensus       195 kvhgv~~------------~yay-----kerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  195 KVHGVQH------------QYAY-----KERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             HHcCchH------------HHHH-----HHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            5443210            0000     01124556666666666666666666666663

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.45  E-value=3.2e-13  Score=134.66  Aligned_cols=149  Identities=17%  Similarity=0.397  Sum_probs=119.6

Q ss_pred             CceeccccccccCCHHHHHHHHHHcCCCCceeccc--cccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHH
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHM  122 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~  122 (345)
                      ..-.|+.|...... ..|..|.... ......|+.  |+..|.. ..+..|         +.|+.|++.|. ...+..|+
T Consensus       406 ~~V~C~NC~~~i~l-~~l~lHe~~C-~r~~V~Cp~~~Cg~v~~r-~el~~H---------~~C~~Cgk~f~-~s~LekH~  472 (567)
T PLN03086        406 DTVECRNCKHYIPS-RSIALHEAYC-SRHNVVCPHDGCGIVLRV-EEAKNH---------VHCEKCGQAFQ-QGEMEKHM  472 (567)
T ss_pred             CeEECCCCCCccch-hHHHHHHhhC-CCcceeCCcccccceeec-cccccC---------ccCCCCCCccc-hHHHHHHH
Confidence            34689999987655 5567887554 334567985  9998833 333433         58999999996 67899999


Q ss_pred             HHhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCC----------HHHHHHHHhhhCCCCcCceeec
Q psy4572         123 KKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLS----------KYSLFTHNKKHLPIEERLHYQC  192 (345)
Q Consensus       123 ~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s----------~s~L~~H~~~H~~~~~~k~y~C  192 (345)
                      +.|+  +++.|+ |++.+ .+..|..|...|.+.+++.|+.|++.|..          ...|..|...+    +.+++.|
T Consensus       473 ~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C----G~rt~~C  544 (567)
T PLN03086        473 KVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC----GSRTAPC  544 (567)
T ss_pred             HhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc----CCcceEc
Confidence            9985  789999 99765 67899999999999999999999999952          45788888885    6779999


Q ss_pred             CccccccCCHHHHHHHHHHhcCC
Q psy4572         193 ELCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       193 ~~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      ..||+.|..+ .+..|+..+|.+
T Consensus       545 ~~Cgk~Vrlr-dm~~H~~~~h~~  566 (567)
T PLN03086        545 DSCGRSVMLK-EMDIHQIAVHQK  566 (567)
T ss_pred             cccCCeeeeh-hHHHHHHHhhcC
Confidence            9999999865 799999999975

>KOG3623|consensus

Probab=99.45  E-value=2e-14  Score=142.55  Aligned_cols=119  Identities=23%  Similarity=0.393  Sum_probs=78.1

Q ss_pred             eccccccccCCHHHHHHHHHhcC--CCCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHh
Q psy4572          76 PCTVCLKMFKTKAQREEHIASHV--TDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAK  153 (345)
Q Consensus        76 ~C~~C~k~F~~~~~L~~H~~~h~--~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~h  153 (345)
                      .|+.|.+.+.....++.|++.-+  .+..|.|..|.++|..+..|.+|+..|....+-.               .+.-.-
T Consensus       212 tcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa---------------~sltqs  276 (1007)
T KOG3623|consen  212 TCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQA---------------ISLTQS  276 (1007)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCccc---------------ccccch
Confidence            45555555555555555554322  2233555555555555555555555553211100               111111


Q ss_pred             cCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHh
Q psy4572         154 HGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       154 h~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      ..-+.|+|.+|||.|+.+.+|+.|+|+|.   |+|||.|+.|+|+|+....+..|+-..
T Consensus       277 a~lRKFKCtECgKAFKfKHHLKEHlRIHS---GEKPfeCpnCkKRFSHSGSySSHmSSK  332 (1007)
T KOG3623|consen  277 ALLRKFKCTECGKAFKFKHHLKEHLRIHS---GEKPFECPNCKKRFSHSGSYSSHMSSK  332 (1007)
T ss_pred             hhhccccccccchhhhhHHHHHhhheeec---CCCCcCCcccccccccCCccccccccc
Confidence            23467999999999999999999999998   889999999999999999999998543

>KOG3623|consensus

Probab=99.43  E-value=6.1e-14  Score=139.16  Aligned_cols=112  Identities=26%  Similarity=0.513  Sum_probs=93.8

Q ss_pred             CCCCCCceeccccccccCCHHHHHHHHHHcCC--CCceeccccccccCCHHHHHHHHHhcCC-------------CCCcc
Q psy4572          40 PQKLDGPHKCEHCEKEFENRRALKRHEKNHTQ--EKTFPCTVCLKMFKTKAQREEHIASHVT-------------DSEFK  104 (345)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~--~k~~~C~~C~k~F~~~~~L~~H~~~h~~-------------~k~~~  104 (345)
                      +........|+.|++.+.....|+.|++..+.  +..|.|..|..+|..+..|.+|+..|..             .+.|+
T Consensus       204 pdAfsqlltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFK  283 (1007)
T KOG3623|consen  204 PDAFSQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFK  283 (1007)
T ss_pred             cchhhhhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccc
Confidence            33334557899999999999999999887543  4559999999999999999999998843             35588


Q ss_pred             CCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHH
Q psy4572         105 CDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNI  151 (345)
Q Consensus       105 C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~  151 (345)
                      |..||+.|..+-.|+.|+|+|.|++||.|+.|+|+|.....+..|+.
T Consensus       284 CtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  284 CTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             ccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence            88888888888888888888888888888888888888888887764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.16  E-value=4.5e-11  Score=119.45  Aligned_cols=119  Identities=18%  Similarity=0.374  Sum_probs=97.5

Q ss_pred             eeccc--cccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHH
Q psy4572          47 HKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKK  124 (345)
Q Consensus        47 ~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~  124 (345)
                      -.|+.  |+..|. +..+..|         +.|+.|++.|. ...+..|+..|+  +++.|+ ||+.+ ....|..|+..
T Consensus       434 V~Cp~~~Cg~v~~-r~el~~H---------~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~t  498 (567)
T PLN03086        434 VVCPHDGCGIVLR-VEEAKNH---------VHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQAS  498 (567)
T ss_pred             eeCCcccccceee-ccccccC---------ccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhc
Confidence            46874  999883 3334443         68999999996 678999999986  789999 99765 66899999999


Q ss_pred             hcCCCccccCCCCCCcCC----------HHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         125 HRKEYSAYCEPCQEGFFS----------RDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       125 h~~~~~~~C~~C~k~F~~----------~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      |.+++++.|+.|++.|..          ...|..|.... |.+++.|..||+.+..+ .+..|+...|
T Consensus       499 hCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h  564 (567)
T PLN03086        499 TCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVH  564 (567)
T ss_pred             cCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhh
Confidence            999999999999999852          35799998884 89999999999998765 5788877665

>PHA00733 hypothetical protein

Probab=99.11  E-value=6.2e-11  Score=97.56  Aligned_cols=85  Identities=19%  Similarity=0.286  Sum_probs=65.7

Q ss_pred             CCCccccCCCCCCcCCHHHHHHH--H---HHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCC
Q psy4572         127 KEYSAYCEPCQEGFFSRDKLETH--N---IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNN  201 (345)
Q Consensus       127 ~~~~~~C~~C~k~F~~~~~l~~H--~---~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~  201 (345)
                      .++++.|.+|++.|.....+..|  .   ..+++.+||.|+.||+.|.+...|..|++.|.     .+|.|+.|++.|..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~-----~~~~C~~CgK~F~~  111 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTE-----HSKVCPVCGKEFRN  111 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCC-----cCccCCCCCCccCC
Confidence            45566677776666665554444  1   23345789999999999999999999998752     35899999999999


Q ss_pred             HHHHHHHHHHhcCCC
Q psy4572         202 KQTFSLSNMYVLSLS  216 (345)
Q Consensus       202 ~~~L~~H~~~~H~~~  216 (345)
                      ...|.+|+...|+++
T Consensus       112 ~~sL~~H~~~~h~~~  126 (128)
T PHA00733        112 TDSTLDHVCKKHNIC  126 (128)
T ss_pred             HHHHHHHHHHhcCcc
Confidence            999999999999875

>KOG3993|consensus

Probab=98.92  E-value=6.5e-11  Score=111.70  Aligned_cols=173  Identities=18%  Similarity=0.236  Sum_probs=111.8

Q ss_pred             CceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCC------------------------
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD------------------------  100 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~------------------------  100 (345)
                      +-|.|..|...|.+.-.|.+|.....-...|+|++|+|.|+-..+|..|.+.|...                        
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea  345 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence            34999999999999999999976544445599999999999999999999988421                        


Q ss_pred             ---------CCccCCCCcccccCHHHHHHHHHHhcCCCc-----------------cccCCCCCCcCCHHHHHHHHHHhc
Q psy4572         101 ---------SEFKCDQCPYVAKRIKYLRYHMKKHRKEYS-----------------AYCEPCQEGFFSRDKLETHNIAKH  154 (345)
Q Consensus       101 ---------k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~-----------------~~C~~C~k~F~~~~~l~~H~~~hh  154 (345)
                               ..|.|..|++.|.+...|+.|+.+|+....                 +.|+.|...+...+.-..+...+.
T Consensus       346 ~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a  425 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVA  425 (500)
T ss_pred             cccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeee
Confidence                     125666666666666666666655543110                 112222222222111111111110


Q ss_pred             C-CCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCCCCccc
Q psy4572         155 G-AQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNMYV  220 (345)
Q Consensus       155 ~-~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~~~~~  220 (345)
                      + .....|+.||..+.+...-..|.+.-+   .+..|.|.+|.-.|.....|.+|+...|.-..+++
T Consensus       426 ~sael~~pp~~~~ppsss~~sgg~~rlg~---~~q~f~~ky~~atfyss~~ltrhin~~Hpse~rqv  489 (500)
T KOG3993|consen  426 GSAELELPPYDGSPPSSSGSSGGYGRLGI---AEQGFTCKYCPATFYSSPGLTRHINKCHPSELRQV  489 (500)
T ss_pred             ccccccCCCCCCCCcccCCCCCccccccc---hhhccccccchHhhhcCcchHhHhhhcChHHhhhh
Confidence            0 122456777766666655444544333   33459999999999999999999999998655543

>PHA00733 hypothetical protein

Probab=98.90  E-value=2e-09  Score=88.65  Aligned_cols=53  Identities=25%  Similarity=0.280  Sum_probs=27.1

Q ss_pred             CCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         128 EYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       128 ~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      +++|.|+.|++.|.+...|..|++.+  +.+|.|+.|++.|.....|..|+...|
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h  123 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKH  123 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence            44455555555555555555554433  234555555555555555555555544

>PHA02768 hypothetical protein; Provisional

Probab=98.65  E-value=9.9e-09  Score=70.67  Aligned_cols=44  Identities=20%  Similarity=0.508  Sum_probs=34.2

Q ss_pred             CCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHH
Q psy4572         158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS  206 (345)
Q Consensus       158 ~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~  206 (345)
                      -|+|+.||+.|...++|..|+++|+     ++|+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-----k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN-----TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC-----CcccCCcccceecccceeE
Confidence            3678888888888888888888875     3688888888887766553

>PHA02768 hypothetical protein; Provisional

Probab=98.56  E-value=2.6e-08  Score=68.63  Aligned_cols=43  Identities=14%  Similarity=0.393  Sum_probs=31.1

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHH
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQR   90 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L   90 (345)
                      .|+|+.||+.|...+.|..|+++|+  ++++|..|++.|.....|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            3677777777777777777777776  467777777777655543

>KOG3993|consensus

Probab=98.50  E-value=7.9e-09  Score=97.85  Aligned_cols=152  Identities=17%  Similarity=0.182  Sum_probs=102.7

Q ss_pred             ccccccCCCCCCCceeccccccccCCHHHHHHHHHHcCC---------------------------------CCceeccc
Q psy4572          33 KRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQ---------------------------------EKTFPCTV   79 (345)
Q Consensus        33 ~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~---------------------------------~k~~~C~~   79 (345)
                      .+.+|.-..-..-.|+|++|+|+|....+|..|.|.|..                                 +..|.|.+
T Consensus       282 ~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~  361 (500)
T KOG3993|consen  282 ALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHT  361 (500)
T ss_pred             HHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHH
Confidence            445555444444569999999999999999999998831                                 12489999


Q ss_pred             cccccCCHHHHHHHHHhcCCCCC-----------------ccCCCCcccccCHHHHHHHHHHhcC-CCccccCCCCCCcC
Q psy4572          80 CLKMFKTKAQREEHIASHVTDSE-----------------FKCDQCPYVAKRIKYLRYHMKKHRK-EYSAYCEPCQEGFF  141 (345)
Q Consensus        80 C~k~F~~~~~L~~H~~~h~~~k~-----------------~~C~~C~~~f~~~~~L~~H~~~h~~-~~~~~C~~C~k~F~  141 (345)
                      |++.|.+..-|+.|+.+|+....                 +-|+.|...+.....-..+...+.+ .....|+.|+..+.
T Consensus       362 C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~pps  441 (500)
T KOG3993|consen  362 CGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPS  441 (500)
T ss_pred             hhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCCCCCCCCcc
Confidence            99999999999999988754211                 2233333322222111111111111 11234788887777


Q ss_pred             CHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCC
Q psy4572         142 SRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPI  184 (345)
Q Consensus       142 ~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~  184 (345)
                      +...-..|.+.-+.+.-|.|.+|.-+|.+...|.+|+...|..
T Consensus       442 ss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  442 SSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             cCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence            6665555555555677899999999999999999999987743

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.23  E-value=9e-07  Score=51.96  Aligned_cols=25  Identities=44%  Similarity=0.849  Sum_probs=19.2

Q ss_pred             HHHHHHHHcCCCCceeccccccccC
Q psy4572          61 ALKRHEKNHTQEKTFPCTVCLKMFK   85 (345)
Q Consensus        61 ~L~~H~~~h~~~k~~~C~~C~k~F~   85 (345)
                      +|..|++.|++++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence            3677888888888888888887775

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.18  E-value=1.3e-06  Score=51.26  Aligned_cols=25  Identities=40%  Similarity=0.812  Sum_probs=18.0

Q ss_pred             HHHHHHhhhCCCCcCceeecCccccccC
Q psy4572         173 SLFTHNKKHLPIEERLHYQCELCGKSFN  200 (345)
Q Consensus       173 ~L~~H~~~H~~~~~~k~y~C~~Cgk~F~  200 (345)
                      +|.+|+++|+   +++||.|+.|++.|.
T Consensus         1 ~l~~H~~~H~---~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMRTHT---GEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHHHHS---SSSSEEESSSSEEES
T ss_pred             CHHHHhhhcC---CCCCCCCCCCcCeeC
Confidence            3677777776   666777777777775

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.15  E-value=2.8e-06  Score=59.09  Aligned_cols=53  Identities=19%  Similarity=0.310  Sum_probs=41.9

Q ss_pred             CCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       158 ~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      .|.||.|++ ..+...|..|....|..+ .+.+.||+|...+.  .+|.+|+..+|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~-~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSE-SKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCC-CCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            478999999 556788999988777553 44689999998765  489999998884

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00616 hypothetical protein

Probab=98.07  E-value=1.8e-06  Score=56.76  Aligned_cols=34  Identities=12%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCCCceeccc
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV   79 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~   79 (345)
                      ||+|+.||+.|...+.+..|++.||+++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            4667777777777777777777776666666654

>PHA00732 hypothetical protein

Probab=98.02  E-value=2.6e-06  Score=64.01  Aligned_cols=44  Identities=18%  Similarity=0.515  Sum_probs=28.5

Q ss_pred             CCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHH
Q psy4572         158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSN  209 (345)
Q Consensus       158 ~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~  209 (345)
                      ||.|+.||+.|.+...|+.|++.+|.     ++.|+.||+.|.   .+..|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~-----~~~C~~CgKsF~---~l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT-----LTKCPVCNKSYR---RLNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC-----CCccCCCCCEeC---Chhhhh
Confidence            46677777777777777777764321     246777777776   366666

>PHA00616 hypothetical protein

Probab=98.00  E-value=3.2e-06  Score=55.55  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             CCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCc
Q psy4572         158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCEL  194 (345)
Q Consensus       158 ~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~  194 (345)
                      ||+|+.||+.|...+.+.+|++.||   +++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h---g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH---KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc---CCCccceeE
Confidence            4566666666666666666666666   444555543

>PHA00732 hypothetical protein

Probab=97.86  E-value=1e-05  Score=60.77  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=31.6

Q ss_pred             ccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         130 SAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       130 ~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      ||.|+.|++.|.+...++.|++.+|.  ++.|+.||+.|.   .+..|.+++-
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---ChhhhhcccC
Confidence            45677777777777777777764332  246788887776   4667776553

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.68  E-value=6.4e-05  Score=52.23  Aligned_cols=50  Identities=20%  Similarity=0.385  Sum_probs=27.9

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCC--CCceeccccccccCCHHHHHHHHHhcC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQ--EKTFPCTVCLKMFKTKAQREEHIASHV   98 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~--~k~~~C~~C~k~F~~~~~L~~H~~~h~   98 (345)
                      .|.||.|++ ..+...|..|....|.  .+.+.||+|...+.  .+|..|+..+|
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            366677766 3445666666555332  23466666665433  25666665543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.64  E-value=4.6e-05  Score=43.06  Aligned_cols=22  Identities=36%  Similarity=0.807  Sum_probs=18.2

Q ss_pred             eecCccccccCCHHHHHHHHHH
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMY  211 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~  211 (345)
                      |.|+.|++.|.++..|.+|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6788888888888888888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.63  E-value=4.4e-05  Score=59.33  Aligned_cols=79  Identities=23%  Similarity=0.366  Sum_probs=23.5

Q ss_pred             ccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHH
Q psy4572         132 YCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMY  211 (345)
Q Consensus       132 ~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~  211 (345)
                      +|..|+..|.+...+..|+...|+...-    ....+.....+..+.+...    ...+.|..|++.|.+...|..|++.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~----~~~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKV----KESFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             --------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred             Cccccccccccccccccccccccccccc----ccccccccccccccccccc----CCCCCCCccCCCCcCHHHHHHHHcC
Confidence            3777777777777788887766653211    1122223444444443321    2258999999999999999999988


Q ss_pred             hcCCCCc
Q psy4572         212 VLSLSNM  218 (345)
Q Consensus       212 ~H~~~~~  218 (345)
                      +++....
T Consensus        73 ~~H~~~~   79 (100)
T PF12756_consen   73 KHHKKRN   79 (100)
T ss_dssp             TTTTC-S
T ss_pred             ccCCCcc
Confidence            7655443

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.57  E-value=6.8e-05  Score=42.41  Aligned_cols=24  Identities=33%  Similarity=0.652  Sum_probs=17.9

Q ss_pred             eecCccccccCCHHHHHHHHHHhc
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      |.|++|++.|.++..|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            678888888888888888888776

...

>KOG2231|consensus

Probab=97.45  E-value=0.00028  Score=72.07  Aligned_cols=121  Identities=22%  Similarity=0.402  Sum_probs=69.7

Q ss_pred             eccccccccCCHHHHHHHHHhcCCCCCccCCCCc---------ccccCHHHHHHHHHHhcC-CC----ccccCCCCCCcC
Q psy4572          76 PCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCP---------YVAKRIKYLRYHMKKHRK-EY----SAYCEPCQEGFF  141 (345)
Q Consensus        76 ~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~---------~~f~~~~~L~~H~~~h~~-~~----~~~C~~C~k~F~  141 (345)
                      .|..| ..|.....|+.|+...|+  .+.|..|-         ...-+...|..|++.-.. +.    .-.|+.|...|.
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fl  193 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCHERFL  193 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhhhhhc
Confidence            34445 445577778888754332  23444332         222345666777654221 11    135788888888


Q ss_pred             CHHHHHHHHHHhcCCCCCCCcch------hhccCCHHHHHHHHhhhCCCCcCceeecC--ccc-cccCCHHHHHHHHH
Q psy4572         142 SRDKLETHNIAKHGAQPYQCETC------RKLFLSKYSLFTHNKKHLPIEERLHYQCE--LCG-KSFNNKQTFSLSNM  210 (345)
Q Consensus       142 ~~~~l~~H~~~hh~~k~y~C~~C------gk~F~s~s~L~~H~~~H~~~~~~k~y~C~--~Cg-k~F~~~~~L~~H~~  210 (345)
                      ....+.+|++.+|    |.|..|      +.-|.....|..|.+.+|       |.|.  .|. +.|.....+..|++
T Consensus       194 d~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H-------flCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  194 DDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH-------FLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             cHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC-------ccccccccccceeeehhHHHHHHH
Confidence            8888888877766    344444      456677778888888777       6666  453 34444444455544

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.41  E-value=7.9e-05  Score=43.87  Aligned_cols=26  Identities=23%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             eeecCccccccCCHHHHHHHHHHhcC
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      ||+|+.|++.|.+...|..|++.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            47788888888888888888777664

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.37  E-value=4.5e-05  Score=70.30  Aligned_cols=58  Identities=22%  Similarity=0.480  Sum_probs=47.7

Q ss_pred             CCCCCCcc--hhhccCCHHHHHHHHhhhCCC----------------CcCceeecCccccccCCHHHHHHHHHHhc
Q psy4572         156 AQPYQCET--CRKLFLSKYSLFTHNKKHLPI----------------EERLHYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       156 ~k~y~C~~--Cgk~F~s~s~L~~H~~~H~~~----------------~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      ++||+|++  |.|+++....|+.|+.--|..                .+.|||+|++|+|++.....|+.|++.-|
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~Hsh  422 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH  422 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccccC
Confidence            58999987  999999999999998743310                13589999999999999999999976544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.33  E-value=0.00017  Score=40.70  Aligned_cols=22  Identities=41%  Similarity=0.804  Sum_probs=12.1

Q ss_pred             eeccccccccCCHHHHHHHHHH
Q psy4572          47 HKCEHCEKEFENRRALKRHEKN   68 (345)
Q Consensus        47 ~~C~~C~k~F~~~~~L~~H~~~   68 (345)
                      |+|+.|++.|.++..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4555555555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.17  E-value=0.00023  Score=55.23  Aligned_cols=72  Identities=18%  Similarity=0.344  Sum_probs=14.0

Q ss_pred             eccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHH
Q psy4572          48 KCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKK  124 (345)
Q Consensus        48 ~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~  124 (345)
                      +|..|+..|.+...+..|+...|+-.   .+ ....+.....+..+.+.. -...+.|..|++.|.+...|..|++.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~---~~-~~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFD---IP-DQKYLVDPNRLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred             Cccccccccccccccccccccccccc---cc-cccccccccccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcC
Confidence            46677777777777777766554421   11 111111222233332221 11246666666666666666666654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.08  E-value=0.00047  Score=38.82  Aligned_cols=23  Identities=30%  Similarity=0.819  Sum_probs=11.6

Q ss_pred             eeccccccccCCHHHHHHHHHHc
Q psy4572          47 HKCEHCEKEFENRRALKRHEKNH   69 (345)
Q Consensus        47 ~~C~~C~k~F~~~~~L~~H~~~h   69 (345)
                      |+|+.|++.|.+...|+.|+++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            45555555555555555555544

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.82  E-value=0.0006  Score=63.04  Aligned_cols=68  Identities=28%  Similarity=0.576  Sum_probs=42.0

Q ss_pred             CCceeccc--cccccCCHHHHHHHHHHcC-CCCceecc--ccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHH
Q psy4572          44 DGPHKCEH--CEKEFENRRALKRHEKNHT-QEKTFPCT--VCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYL  118 (345)
Q Consensus        44 ~~~~~C~~--C~k~F~~~~~L~~H~~~h~-~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L  118 (345)
                      ++||+|++  |+|.|++...|+-|+..-| .++...-+  +=-..|            -..+|||+|+.|++++.....|
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F------------~~~~KPYrCevC~KRYKNlNGL  414 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF------------SAKDKPYRCEVCDKRYKNLNGL  414 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccc------------cccCCceeccccchhhccCccc
Confidence            47788865  8888888888887765422 11111111  111111            2356888888888888888888


Q ss_pred             HHHHH
Q psy4572         119 RYHMK  123 (345)
Q Consensus       119 ~~H~~  123 (345)
                      +.|+.
T Consensus       415 KYHr~  419 (423)
T COG5189         415 KYHRK  419 (423)
T ss_pred             eeccc
Confidence            88764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.82  E-value=0.0016  Score=60.83  Aligned_cols=131  Identities=21%  Similarity=0.355  Sum_probs=94.6

Q ss_pred             eeccc--cccccCCHHHHHHHHHhcCCCCCccCCCCc---cccc------CHHHHHHHHHHhcCCCcc----ccCCCCCC
Q psy4572          75 FPCTV--CLKMFKTKAQREEHIASHVTDSEFKCDQCP---YVAK------RIKYLRYHMKKHRKEYSA----YCEPCQEG  139 (345)
Q Consensus        75 ~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~---~~f~------~~~~L~~H~~~h~~~~~~----~C~~C~k~  139 (345)
                      |.||.  |..+......++.|.+..|+.  +.|..|-   +.|.      +...|..|...-..+..|    .|..|...
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~  229 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY  229 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence            77887  788888888999999875543  4565553   2332      445567776543323222    59999999


Q ss_pred             cCCHHHHHHHHHHhcCCCCCCCcchh-------hccCCHHHHHHHHhhhCCCCcCceeecCc--cc----cccCCHHHHH
Q psy4572         140 FFSRDKLETHNIAKHGAQPYQCETCR-------KLFLSKYSLFTHNKKHLPIEERLHYQCEL--CG----KSFNNKQTFS  206 (345)
Q Consensus       140 F~~~~~l~~H~~~hh~~k~y~C~~Cg-------k~F~s~s~L~~H~~~H~~~~~~k~y~C~~--Cg----k~F~~~~~L~  206 (345)
                      |.+-.+|.+|.+..| ++   |-+|.       .-|++...|..|.+.-|       |.|..  |-    ..|.....|.
T Consensus       230 FYdDDEL~~HcR~~H-E~---ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-------y~ct~qtc~~~k~~vf~~~~el~  298 (493)
T COG5236         230 FYDDDELRRHCRLRH-EA---CHICDMVGPIRYQYFKSYEDLEAHFRNAH-------YCCTFQTCRVGKCYVFPYHTELL  298 (493)
T ss_pred             ecChHHHHHHHHhhh-hh---hhhhhccCccchhhhhCHHHHHHHhhcCc-------eEEEEEEEecCcEEEeccHHHHH
Confidence            999999999999887 43   55554       34788889999988765       77754  42    5799999999


Q ss_pred             HHHHHhcCCCCc
Q psy4572         207 LSNMYVLSLSNM  218 (345)
Q Consensus       207 ~H~~~~H~~~~~  218 (345)
                      .|+...|+.-.+
T Consensus       299 ~h~~~~h~~~~~  310 (493)
T COG5236         299 EHLTRFHKVNAR  310 (493)
T ss_pred             HHHHHHhhcccc
Confidence            999999986444

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.81  E-value=0.00075  Score=39.59  Aligned_cols=23  Identities=35%  Similarity=0.891  Sum_probs=12.8

Q ss_pred             eeccccccccCCHHHHHHHHHHc
Q psy4572          47 HKCEHCEKEFENRRALKRHEKNH   69 (345)
Q Consensus        47 ~~C~~C~k~F~~~~~L~~H~~~h   69 (345)
                      |+|..|++.|.+...|..|++.|
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCccCCccCChhHHHHHhHHh
Confidence            55555555555555555555544

>KOG2231|consensus

Probab=96.79  E-value=0.0027  Score=65.05  Aligned_cols=133  Identities=20%  Similarity=0.421  Sum_probs=92.3

Q ss_pred             eeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCC---------CCcCCHHH
Q psy4572          75 FPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQ---------EGFFSRDK  145 (345)
Q Consensus        75 ~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~---------k~F~~~~~  145 (345)
                      +.|.+|++.|.-..            ..-.|..| ..|.....|+.|+...|+  .+.|..|-         ....++.+
T Consensus       100 ~~C~~C~~~~~~~~------------~~~~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC~~~~kif~~e~k~Yt~~e  164 (669)
T KOG2231|consen  100 HSCHICDRRFRALY------------NKKECLHC-TEFKSVENLKNHMRDQHK--LHLCSLCLQNLKIFINERKLYTRAE  164 (669)
T ss_pred             hhcCccccchhhhc------------ccCCCccc-cchhHHHHHHHHHHHhhh--hhccccccccceeeeeeeehehHHH
Confidence            56777776653221            12368888 788899999999854332  23444442         22335677


Q ss_pred             HHHHHHHhcC-C----CCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc------ccccCCHHHHHHHHHHhcC
Q psy4572         146 LETHNIAKHG-A----QPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC------GKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       146 l~~H~~~hh~-~----k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C------gk~F~~~~~L~~H~~~~H~  214 (345)
                      +..|+..-.. +    ..-.|..|...|-....|.+|++.+|       |.|..|      +..|..-+.|..|.+..|-
T Consensus       165 l~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h-------~~chfC~~~~~~neyy~~~~dLe~HfR~~Hf  237 (669)
T KOG2231|consen  165 LNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH-------EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHF  237 (669)
T ss_pred             HHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce-------eheeecCcccccchhcccchHHHHHhhhcCc
Confidence            8888764322 1    12569999999999999999999887       777777      4678899999999999999


Q ss_pred             CCCcccccccceeee
Q psy4572         215 LSNMYVLSSSNMYVL  229 (345)
Q Consensus       215 ~~~~~~~s~~~~~~~  229 (345)
                      .+..-.....-.+..
T Consensus       238 lCE~~~C~~~~f~~~  252 (669)
T KOG2231|consen  238 LCEEEFCRTKKFYVA  252 (669)
T ss_pred             cccccccccceeeeh
Confidence            988665544444433

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.55  E-value=0.0021  Score=43.29  Aligned_cols=40  Identities=10%  Similarity=0.139  Sum_probs=24.7

Q ss_pred             HHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCCC
Q psy4572         175 FTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLS  216 (345)
Q Consensus       175 ~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~  216 (345)
                      ..+.+.+.  ..+.|-.|++|+..+++..+|++|+...|..+
T Consensus        12 ~~~~k~~~--~S~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   12 TKKPKSKS--QSEQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             ----CCCC--TTS--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             hhHHHHhh--ccCCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            44555554  35668899999999999999999998888764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.40  E-value=0.003  Score=35.94  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=18.1

Q ss_pred             eecCccccccCCHHHHHHHHHHhcC
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      |+|+.|+.... +..|.+|++.+|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            67888888887 8888888888874

>smart00355 ZnF_C2H2 zinc finger

Probab=96.17  E-value=0.0038  Score=35.47  Aligned_cols=23  Identities=30%  Similarity=0.606  Sum_probs=17.5

Q ss_pred             eecCccccccCCHHHHHHHHHHh
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            46888888888888888887743

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.00  E-value=0.011  Score=39.90  Aligned_cols=31  Identities=26%  Similarity=0.509  Sum_probs=16.9

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCCCCc
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKT   74 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~   74 (345)
                      +.|..||+|+..+....+|++|+..+|+.+|
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            4556777777777777777777766665543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.97  E-value=0.0021  Score=62.50  Aligned_cols=138  Identities=25%  Similarity=0.392  Sum_probs=92.3

Q ss_pred             CceeccccccccCCHHHHHHHHH--HcCCC--Cceecc--ccccccCCHHHHHHHHHhcCCCCCccCCCC--cccccCHH
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEK--NHTQE--KTFPCT--VCLKMFKTKAQREEHIASHVTDSEFKCDQC--PYVAKRIK  116 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~--~h~~~--k~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C--~~~f~~~~  116 (345)
                      .++.|..|...|.....+..|.+  .|.++  +++.|+  .|++.|.+...+..|...|.+..++.|...  ...+....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            36788889999999999999988  78888  889998  699999998888888888888777776543  33332221


Q ss_pred             HH-----HHHHHHhcCCCcccc--CCCCCCcCCHHHHHHHHHHhcCCC--CCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         117 YL-----RYHMKKHRKEYSAYC--EPCQEGFFSRDKLETHNIAKHGAQ--PYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       117 ~L-----~~H~~~h~~~~~~~C--~~C~k~F~~~~~l~~H~~~hh~~k--~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      .-     ..............+  ..|...+.....+..|...+-...  .+.+..|.+.|.....+..|.+.|.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT  442 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccc
Confidence            11     111111112222333  335556666666666666555444  4566778888888888888888775

>smart00355 ZnF_C2H2 zinc finger

Probab=95.95  E-value=0.0058  Score=34.65  Aligned_cols=24  Identities=42%  Similarity=0.805  Sum_probs=19.9

Q ss_pred             CCCcchhhccCCHHHHHHHHhhhC
Q psy4572         159 YQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       159 y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      |+|+.|++.|.....+..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            578889999998888988888663

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.82  E-value=0.011  Score=55.38  Aligned_cols=129  Identities=25%  Similarity=0.451  Sum_probs=91.7

Q ss_pred             ceeccc--cccccCCHHHHHHHHHHcCCCCceeccccc---cccC------CHHHHHHHHHhcCCCCCc----cCCCCcc
Q psy4572          46 PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTVCL---KMFK------TKAQREEHIASHVTDSEF----KCDQCPY  110 (345)
Q Consensus        46 ~~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~---k~F~------~~~~L~~H~~~h~~~k~~----~C~~C~~  110 (345)
                      .|.||.  |+.+......|..|.+..|+.  +.|.+|-   +.|.      +...|..|...-..+..|    .|..|..
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~  228 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKI  228 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccc
Confidence            488975  888777788999999987764  7788873   3443      344566666432222223    5999999


Q ss_pred             cccCHHHHHHHHHHhcCCCccccCCCCC-------CcCCHHHHHHHHHHhcCCCCCCCcc--h--h--hccCCHHHHHHH
Q psy4572         111 VAKRIKYLRYHMKKHRKEYSAYCEPCQE-------GFFSRDKLETHNIAKHGAQPYQCET--C--R--KLFLSKYSLFTH  177 (345)
Q Consensus       111 ~f~~~~~L~~H~~~h~~~~~~~C~~C~k-------~F~~~~~l~~H~~~hh~~k~y~C~~--C--g--k~F~s~s~L~~H  177 (345)
                      .|-+.+.|..|.+..|.    .|.+|++       -|.+...|..|.+..|    |.|..  |  |  ..|.....|+.|
T Consensus       229 ~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~~h  300 (493)
T COG5236         229 YFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELLEH  300 (493)
T ss_pred             eecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHHHH
Confidence            99999999999987553    4666654       3778888999987655    55543  4  2  468889999999


Q ss_pred             HhhhCCC
Q psy4572         178 NKKHLPI  184 (345)
Q Consensus       178 ~~~H~~~  184 (345)
                      +...|+.
T Consensus       301 ~~~~h~~  307 (493)
T COG5236         301 LTRFHKV  307 (493)
T ss_pred             HHHHhhc
Confidence            8876643

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.75  E-value=0.0066  Score=34.76  Aligned_cols=23  Identities=22%  Similarity=0.603  Sum_probs=17.8

Q ss_pred             eecCccccccCCHHHHHHHHHHh
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      |.|++|++.|.+...+..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            57888888888888888887643

>KOG1146|consensus

Probab=95.39  E-value=0.0074  Score=65.51  Aligned_cols=75  Identities=23%  Similarity=0.398  Sum_probs=37.9

Q ss_pred             ccccccccCCHHHHHHHHHH-cCCCCceeccccccccCCHHHHHHHHHhcC-------------------------CCCC
Q psy4572          49 CEHCEKEFENRRALKRHEKN-HTQEKTFPCTVCLKMFKTKAQREEHIASHV-------------------------TDSE  102 (345)
Q Consensus        49 C~~C~k~F~~~~~L~~H~~~-h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~-------------------------~~k~  102 (345)
                      |..|+..+.....+..|+.. |...+.++|+.|+..|+....|..|++..|                         +.++
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p  518 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP  518 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence            33344444444444444332 233345555555555555555555555411                         1244


Q ss_pred             ccCCCCcccccCHHHHHHHHH
Q psy4572         103 FKCDQCPYVAKRIKYLRYHMK  123 (345)
Q Consensus       103 ~~C~~C~~~f~~~~~L~~H~~  123 (345)
                      |.|..|...+.....|..|++
T Consensus       519 ~~C~~C~~stttng~Lsihlq  539 (1406)
T KOG1146|consen  519 YPCRACNYSTTTNGNLSIHLQ  539 (1406)
T ss_pred             ccceeeeeeeecchHHHHHHH
Confidence            666666666666666666654

>PRK04860 hypothetical protein; Provisional

Probab=95.25  E-value=0.013  Score=50.15  Aligned_cols=37  Identities=22%  Similarity=0.651  Sum_probs=24.5

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKT   86 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~   86 (345)
                      +|.|. |++   ....+++|.++|.++++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            56776 766   45556677777777777777777766643

>KOG2785|consensus

Probab=94.89  E-value=0.063  Score=51.30  Aligned_cols=56  Identities=18%  Similarity=0.237  Sum_probs=40.9

Q ss_pred             CCCCCcchhhccCCHHHHHHHHhhhCCCC--------------------cCceeecCccc---cccCCHHHHHHHHHHh
Q psy4572         157 QPYQCETCRKLFLSKYSLFTHNKKHLPIE--------------------ERLHYQCELCG---KSFNNKQTFSLSNMYV  212 (345)
Q Consensus       157 k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~--------------------~~k~y~C~~Cg---k~F~~~~~L~~H~~~~  212 (345)
                      -|-.|-.|++.+.+...-..||..+|+.-                    ...-|.|-.|+   +.|.+....++||...
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K  243 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDK  243 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhc
Confidence            34667778888888777778877776421                    11237888888   9999999999998654

>KOG1146|consensus

Probab=94.89  E-value=0.0053  Score=66.58  Aligned_cols=138  Identities=20%  Similarity=0.349  Sum_probs=84.1

Q ss_pred             ccccccccCCHHHHHHHHHh-cCCCCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhcC
Q psy4572          77 CTVCLKMFKTKAQREEHIAS-HVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHG  155 (345)
Q Consensus        77 C~~C~k~F~~~~~L~~H~~~-h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~  155 (345)
                      |..|+..+.++..+..|+.. +...+.++|+.|+..+.....|..|+|.-+.+..-  ..|... .....+.+-..-..+
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~--~~c~~g-q~~~~~arg~~~~~~  515 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS--AYCKAG-QNHPRLARGEVYRCP  515 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccch--hHhHhc-cccccccccccccCC
Confidence            33344444444444444432 44557789999999999999999998863322111  111111 110011110111123


Q ss_pred             CCCCCCcchhhccCCHHHHHHHHhhhC--C--------------------------------------CCcCceeecCcc
Q psy4572         156 AQPYQCETCRKLFLSKYSLFTHNKKHL--P--------------------------------------IEERLHYQCELC  195 (345)
Q Consensus       156 ~k~y~C~~Cgk~F~s~s~L~~H~~~H~--~--------------------------------------~~~~k~y~C~~C  195 (345)
                      .++|.|..|...++.+.+|..|++.--  .                                      ...+-++.|.+|
T Consensus       516 ~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc  595 (1406)
T KOG1146|consen  516 GKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVC  595 (1406)
T ss_pred             CCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhh
Confidence            567888888888888888888875320  0                                      011235899999


Q ss_pred             ccccCCHHHHHHHHHHhcCCCC
Q psy4572         196 GKSFNNKQTFSLSNMYVLSLSN  217 (345)
Q Consensus       196 gk~F~~~~~L~~H~~~~H~~~~  217 (345)
                      ++.-+-..+|..|+...++...
T Consensus       596 ~yetniarnlrihmtss~~s~~  617 (1406)
T KOG1146|consen  596 SYETNIARNLRIHMTASPSSSP  617 (1406)
T ss_pred             cchhhhhhccccccccCCCCCC
Confidence            9999999999999998887766

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.85  E-value=0.021  Score=32.38  Aligned_cols=22  Identities=45%  Similarity=0.797  Sum_probs=10.0

Q ss_pred             eeccccccccCCHHHHHHHHHHc
Q psy4572          47 HKCEHCEKEFENRRALKRHEKNH   69 (345)
Q Consensus        47 ~~C~~C~k~F~~~~~L~~H~~~h   69 (345)
                      |+|+.|+.... ...|.+|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            34555555444 44555555543

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.72  E-value=0.019  Score=32.74  Aligned_cols=20  Identities=30%  Similarity=0.828  Sum_probs=10.1

Q ss_pred             eccccccccCCHHHHHHHHH
Q psy4572          48 KCEHCEKEFENRRALKRHEK   67 (345)
Q Consensus        48 ~C~~C~k~F~~~~~L~~H~~   67 (345)
                      .|..|++.|.+...++.|++
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCcCCHHHHHHHHC
Confidence            45555555555555555543

>PRK04860 hypothetical protein; Provisional

Probab=94.70  E-value=0.015  Score=49.62  Aligned_cols=37  Identities=27%  Similarity=0.761  Sum_probs=22.6

Q ss_pred             CCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCC
Q psy4572         158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNN  201 (345)
Q Consensus       158 ~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~  201 (345)
                      +|.|. |++   ....+.+|.++|.   ++++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~---g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVR---GEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhc---CCccEECCCCCceeEE
Confidence            46665 665   4555666666665   5556666666666543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.65  E-value=0.003  Score=61.30  Aligned_cols=144  Identities=17%  Similarity=0.200  Sum_probs=104.4

Q ss_pred             CceeccccccccCCHHHHHHHHH--hcCCC--CCccCC--CCcccccCHHHHHHHHHHhcCCCccccCC--CCCCcCCHH
Q psy4572          73 KTFPCTVCLKMFKTKAQREEHIA--SHVTD--SEFKCD--QCPYVAKRIKYLRYHMKKHRKEYSAYCEP--CQEGFFSRD  144 (345)
Q Consensus        73 k~~~C~~C~k~F~~~~~L~~H~~--~h~~~--k~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~k~F~~~~  144 (345)
                      .++.|..|...|.....+..|.+  .|.++  +++.|+  .|++.|.+...+..|...|.+..+..|..  |...+....
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            36889999999999999999999  79898  899999  79999999999999999998877776643  333333322


Q ss_pred             H-----HHHHHHHhcCCCCCCCc--chhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCCCC
Q psy4572         145 K-----LETHNIAKHGAQPYQCE--TCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSN  217 (345)
Q Consensus       145 ~-----l~~H~~~hh~~k~y~C~--~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~~  217 (345)
                      .     ...............|.  .|...+.....+..|...|... +...+.|..|.+.|.....+..|.+.+.....
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSF-RPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAP  446 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhcccccccccccccccc-CCcCCCCCcchhhccCcccccccccccccCCc
Confidence            2     11111112223444443  3777888888888887777532 22357889999999999999999887765433

>KOG2785|consensus

Probab=94.64  E-value=0.083  Score=50.49  Aligned_cols=27  Identities=11%  Similarity=0.129  Sum_probs=22.5

Q ss_pred             eeecCccccccCCHHHHHHHHHHhcCC
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      |-.|-.|++.|.+-..-..||..+|++
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~Hgf  192 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGF  192 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCC
Confidence            567888888888888888888888884

>KOG2482|consensus

Probab=93.98  E-value=0.17  Score=47.74  Aligned_cols=54  Identities=19%  Similarity=0.332  Sum_probs=36.4

Q ss_pred             CCCcchhhccCCHHHHHHHHhhhCCC------------------------CcCceeecCccccccCCHHHHHHHHHHh
Q psy4572         159 YQCETCRKLFLSKYSLFTHNKKHLPI------------------------EERLHYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       159 y~C~~Cgk~F~s~s~L~~H~~~H~~~------------------------~~~k~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      ..|-.|....-+...|..|++..|.-                        +..+.-.|-.|.-.|-....|..|+..+
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~  357 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVED  357 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcccc
Confidence            35666666666666666666654411                        0122356888999999999999998644

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.77  E-value=0.014  Score=34.18  Aligned_cols=22  Identities=18%  Similarity=0.528  Sum_probs=15.0

Q ss_pred             eecCccccccCCHHHHHHHHHH
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMY  211 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~  211 (345)
                      |.|..|++.|.+...+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777776543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.68  E-value=0.094  Score=30.21  Aligned_cols=21  Identities=24%  Similarity=0.683  Sum_probs=13.8

Q ss_pred             eecCccccccCCHHHHHHHHHH
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMY  211 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~  211 (345)
                      ..|+.||+.| ..+.|.+|.+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            3577777777 56667777653

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=92.59  E-value=0.035  Score=32.45  Aligned_cols=22  Identities=36%  Similarity=0.720  Sum_probs=16.2

Q ss_pred             CCCcchhhccCCHHHHHHHHhh
Q psy4572         159 YQCETCRKLFLSKYSLFTHNKK  180 (345)
Q Consensus       159 y~C~~Cgk~F~s~s~L~~H~~~  180 (345)
                      |.|..|++.|.+...+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777777664

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG2482|consensus

Probab=92.44  E-value=0.19  Score=47.32  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=23.2

Q ss_pred             eecCccccccCCHHHHHHHHHHhcCC
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      ..|-.|.....+...|..|++.+|..
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~  305 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEF  305 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHh
Confidence            58999999999999999999998863

>TIGR00622 ssl1 transcription factor ssl1

Probab=91.92  E-value=0.19  Score=40.09  Aligned_cols=25  Identities=28%  Similarity=0.794  Sum_probs=13.9

Q ss_pred             CCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         157 QPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       157 k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      ..|+|+.|+..|--.=+...|...|
T Consensus        80 ~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        80 HRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             cceeCCCCCCccccccchhhhhhcc
Confidence            3466666666665555555554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4173|consensus

Probab=91.32  E-value=0.11  Score=45.55  Aligned_cols=77  Identities=26%  Similarity=0.468  Sum_probs=42.8

Q ss_pred             eeccc--cccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHh----------cCCCcccc--CCCCCCc
Q psy4572          75 FPCTV--CLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKH----------RKEYSAYC--EPCQEGF  140 (345)
Q Consensus        75 ~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h----------~~~~~~~C--~~C~k~F  140 (345)
                      +.|++  |.+.|........|..+-|+.   .|..|.+.|.+..-|..|+...          .|...|.|  +.|+..|
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF  156 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF  156 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence            55665  666666666666665543332   5666666666666666665422          23444555  4455555


Q ss_pred             CCHHHHHHHHHHhc
Q psy4572         141 FSRDKLETHNIAKH  154 (345)
Q Consensus       141 ~~~~~l~~H~~~hh  154 (345)
                      .+....+.|+...|
T Consensus       157 kT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  157 KTSRDRKDHMIRMH  170 (253)
T ss_pred             hhhhhhhhHHHHhc
Confidence            55555555544433

>KOG4173|consensus

Probab=91.07  E-value=0.11  Score=45.51  Aligned_cols=77  Identities=25%  Similarity=0.481  Sum_probs=46.4

Q ss_pred             CCccCCC--CcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhc----------CCCCCCC--cchhh
Q psy4572         101 SEFKCDQ--CPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH----------GAQPYQC--ETCRK  166 (345)
Q Consensus       101 k~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh----------~~k~y~C--~~Cgk  166 (345)
                      ..|.|+.  |...|.....+..|..+-++.   .|..|.+.|.+..-|..|+...|          |...|+|  ..|+.
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~  154 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTE  154 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhh
Confidence            4467764  666777777777776554432   57777777777777777766554          2333555  23555


Q ss_pred             ccCCHHHHHHHHhh
Q psy4572         167 LFLSKYSLFTHNKK  180 (345)
Q Consensus       167 ~F~s~s~L~~H~~~  180 (345)
                      .|.+...-..|+-.
T Consensus       155 KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  155 KFKTSRDRKDHMIR  168 (253)
T ss_pred             hhhhhhhhhhHHHH
Confidence            55555555555443

>KOG2893|consensus

Probab=91.07  E-value=0.06  Score=48.17  Aligned_cols=47  Identities=26%  Similarity=0.514  Sum_probs=27.6

Q ss_pred             CcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         161 CETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       161 C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      |=+|++.|....-|.+|++..|       |+|.+|.|..-+--.|..|-..+|.
T Consensus        13 cwycnrefddekiliqhqkakh-------fkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKAKH-------FKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeecccccchhhhhhhhhhhcc-------ceeeeehhhhccCCCceeehhhhhh
Confidence            5556666666666666655544       6666666655555555555444443

>smart00451 ZnF_U1 U1-like zinc finger

Probab=90.95  E-value=0.16  Score=31.27  Aligned_cols=24  Identities=17%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             eeecCccccccCCHHHHHHHHHHh
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      +|.|++|++.|.+...+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            588999999999999999997644

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>TIGR00622 ssl1 transcription factor ssl1

Probab=90.65  E-value=0.26  Score=39.36  Aligned_cols=85  Identities=12%  Similarity=0.208  Sum_probs=46.6

Q ss_pred             CceeccccccccCCHHHHHHHHHhcCC------------CCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCc
Q psy4572          73 KTFPCTVCLKMFKTKAQREEHIASHVT------------DSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGF  140 (345)
Q Consensus        73 k~~~C~~C~k~F~~~~~L~~H~~~h~~------------~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F  140 (345)
                      -|..|+.|+-..-....|.+...--..            ...-.|-.|...|.......  ...-.....|+|+.|...|
T Consensus        14 LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~--~~~~~~~~~y~C~~C~~~F   91 (112)
T TIGR00622        14 LPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP--FDELKDSHRYVCAVCKNVF   91 (112)
T ss_pred             CCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccccc--ccccccccceeCCCCCCcc
Confidence            356677777666665555543210000            11124888888776543111  0001233467888888888


Q ss_pred             CCHHHHHHHHHHhcCCCCCCCcchh
Q psy4572         141 FSRDKLETHNIAKHGAQPYQCETCR  165 (345)
Q Consensus       141 ~~~~~l~~H~~~hh~~k~y~C~~Cg  165 (345)
                      =-.-+.-.|...|      .|+.|.
T Consensus        92 C~dCD~fiHe~Lh------~CPGC~  110 (112)
T TIGR00622        92 CVDCDVFVHESLH------CCPGCI  110 (112)
T ss_pred             ccccchhhhhhcc------CCcCCC
Confidence            7776666775554      377665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=90.21  E-value=0.33  Score=38.54  Aligned_cols=85  Identities=16%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             CccccCCCCCCcCCHHHHHHHHHHhcCCC-CCCCcchhhccCCHHHHHH-HHhhhCCCCc---------Cceeec----C
Q psy4572         129 YSAYCEPCQEGFFSRDKLETHNIAKHGAQ-PYQCETCRKLFLSKYSLFT-HNKKHLPIEE---------RLHYQC----E  193 (345)
Q Consensus       129 ~~~~C~~C~k~F~~~~~l~~H~~~hh~~k-~y~C~~Cgk~F~s~s~L~~-H~~~H~~~~~---------~k~y~C----~  193 (345)
                      +...|..|+..... .++..|.+..|... ......=.+.+.....+.. ......+...         ..-|.|    +
T Consensus        10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~   88 (109)
T PF12013_consen   10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPP   88 (109)
T ss_pred             CEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCC
Confidence            34579999988766 88999998655332 1111100011111110100 0000000000         112999    9


Q ss_pred             ccccccCCHHHHHHHHHHhcC
Q psy4572         194 LCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       194 ~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      .|++.+.+...+.+|.+.+|+
T Consensus        89 ~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   89 HCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CCCcEeccHHHHHHHHHHhcC
Confidence            999999999999999999996

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=90.02  E-value=0.25  Score=28.43  Aligned_cols=19  Identities=32%  Similarity=0.630  Sum_probs=11.4

Q ss_pred             CCcchhhccCCHHHHHHHHh
Q psy4572         160 QCETCRKLFLSKYSLFTHNK  179 (345)
Q Consensus       160 ~C~~Cgk~F~s~s~L~~H~~  179 (345)
                      .|+.||+.| ..+.|.+|..
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            466666666 4555666654

>KOG2893|consensus

Probab=89.05  E-value=0.1  Score=46.74  Aligned_cols=44  Identities=30%  Similarity=0.613  Sum_probs=36.6

Q ss_pred             eeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHH
Q psy4572          47 HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHI   94 (345)
Q Consensus        47 ~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~   94 (345)
                      -.|-.|++.|.++.-|.+|++.    +.|+|.+|.+...+--.|..|.
T Consensus        11 pwcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihc   54 (341)
T KOG2893|consen   11 PWCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHC   54 (341)
T ss_pred             ceeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeeh
Confidence            4799999999999999999887    3499999998877766666664

>smart00451 ZnF_U1 U1-like zinc finger

Probab=88.81  E-value=0.34  Score=29.78  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=13.9

Q ss_pred             ceeccccccccCCHHHHHHHHH
Q psy4572          46 PHKCEHCEKEFENRRALKRHEK   67 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~   67 (345)
                      +|.|..|++.|.+...+..|++
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4666666666666666666654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=88.52  E-value=0.27  Score=33.83  Aligned_cols=31  Identities=13%  Similarity=0.319  Sum_probs=25.5

Q ss_pred             CcCceeecCccccccCCHHHHHHHHHHhcCC
Q psy4572         185 EERLHYQCELCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       185 ~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      +++.-+.||-||..|..+....+|....|+.
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~   43 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHGW   43 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence            3566788999999999999999998877764

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=86.04  E-value=0.37  Score=29.68  Aligned_cols=11  Identities=18%  Similarity=0.570  Sum_probs=5.8

Q ss_pred             eeccccccccC
Q psy4572          47 HKCEHCEKEFE   57 (345)
Q Consensus        47 ~~C~~C~k~F~   57 (345)
                      |+|..||..+.
T Consensus         2 ~~C~~CGy~y~   12 (33)
T cd00350           2 YVCPVCGYIYD   12 (33)
T ss_pred             EECCCCCCEEC
Confidence            45555555544

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.17  E-value=0.18  Score=45.33  Aligned_cols=46  Identities=17%  Similarity=0.251  Sum_probs=24.8

Q ss_pred             CCCCCcchhhccCCHHHHHHHHhhhC-C------CCcCc-----eeecCccccccCCH
Q psy4572         157 QPYQCETCRKLFLSKYSLFTHNKKHL-P------IEERL-----HYQCELCGKSFNNK  202 (345)
Q Consensus       157 k~y~C~~Cgk~F~s~s~L~~H~~~H~-~------~~~~k-----~y~C~~Cgk~F~~~  202 (345)
                      +.+.||+|++.|.+..-.....+.-. .      -++-.     ...||.||..|...
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            45667777777776543333333210 0      01111     25699999987654

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=83.80  E-value=1.7  Score=34.43  Aligned_cols=24  Identities=29%  Similarity=0.530  Sum_probs=22.7

Q ss_pred             CCC----cchhhccCCHHHHHHHHhhhC
Q psy4572         159 YQC----ETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       159 y~C----~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      |.|    +.|+..+.+...+.+|.+.+|
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~H  108 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEH  108 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence            889    999999999999999999887

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=83.70  E-value=0.54  Score=37.45  Aligned_cols=30  Identities=23%  Similarity=0.602  Sum_probs=18.5

Q ss_pred             CCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCH
Q psy4572         159 YQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK  202 (345)
Q Consensus       159 y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~  202 (345)
                      ..|+.||++|-..              ++.|-.||.||..|.-.
T Consensus        10 R~Cp~CG~kFYDL--------------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL--------------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC--------------CCCCccCCCCCCccCcc
Confidence            3577777776553              33466677777776544

The function of members of this family is unknown.

>KOG2186|consensus

Probab=81.33  E-value=0.87  Score=41.33  Aligned_cols=47  Identities=19%  Similarity=0.504  Sum_probs=30.0

Q ss_pred             eeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHh
Q psy4572          47 HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIAS   96 (345)
Q Consensus        47 ~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~   96 (345)
                      |.|..||....... +.+|+-..++ .-|.|-.|++.|.. .+...|..-
T Consensus         4 FtCnvCgEsvKKp~-vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kC   50 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQ-VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKC   50 (276)
T ss_pred             Eehhhhhhhccccc-hHHHHHhccC-CeeEEeeccccccc-chhhhhhhh
Confidence            66777777655533 4557766666 44777777777766 556666543

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=81.22  E-value=0.88  Score=36.24  Aligned_cols=30  Identities=20%  Similarity=0.576  Sum_probs=18.6

Q ss_pred             eeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCH
Q psy4572          47 HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTK   87 (345)
Q Consensus        47 ~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~   87 (345)
                      ..|+.||+.|...           +..|..||.||..|.-.
T Consensus        10 R~Cp~CG~kFYDL-----------nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDL-----------NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccC-----------CCCCccCCCCCCccCcc
Confidence            4677777776652           23566677777766554

The function of members of this family is unknown.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=81.10  E-value=0.83  Score=31.51  Aligned_cols=32  Identities=19%  Similarity=0.374  Sum_probs=21.1

Q ss_pred             CCCCCCceeccccccccCCHHHHHHHHHHcCC
Q psy4572          40 PQKLDGPHKCEHCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      ...++.-+.||.|+..|.......+|...-|+
T Consensus        11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             ccCCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            34455567777777777777777777665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	345
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		7e-17
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		3e-08
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		7e-08
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		8e-08
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		9e-08
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		9e-08
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		1e-07
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		1e-07
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-07
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		2e-04
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-07
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		2e-04
2dlq_A	124	Solution Structure Of The Tandem Four Zf-C2h2 Domai		3e-07
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		4e-07
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		5e-07
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		9e-04
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-05
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		3e-04
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-04
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		1e-04
2yt9_A	95	Solution Structure Of C2h2 Type Zinc Finger Domain		2e-04
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		4e-04
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		5e-04
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		6e-04
2adr_A	60	Adr1 Dna-Binding Domain From Saccharomyces Cerevisi		7e-04
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		7e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%)
Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           P+KC  C K F +++ L RH++ HT EK + C  C K F  +A    H  +H  +  + C
Sbjct: 49  PYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
            +C     ++ +LR H + H  E    C  C + F   D L TH     G +PY+C  C 
Sbjct: 109 PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 166 KLFLSKYSLFTHNKKHL 182
           K F  + +L  H + H 
Sbjct: 169 KSFSRRDALNVHQRTHT 185

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%)
Query: 45  GPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFK 104
           GPHKCE C K F  +  LK H + HT  K + C  C       +   +H+  H  +  FK
Sbjct: 7   GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 105 CDQCPYVAKRIKYLRYHMKKHRKE 128
           C  CPY ++    L  H++ H  +
Sbjct: 67  CQICPYASRNSSQLTVHLRSHTGD 90

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 43  LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
           ++ P+ C  E C++ F    +L RH + HT +K F C +C++ F        HI +H  +
Sbjct: 1   MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
             F CD C     R    + H K H ++
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 43  LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
           ++ P+ C  E C++ F +   L RH + HT +K F C +C++ F        HI +H  +
Sbjct: 1   MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
             F CD C     R    + H K H ++
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 43  LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
           ++ P+ C  E C++ F     L RH + HT +K F C +C++ F        HI +H  +
Sbjct: 1   MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
             F CD C     R    + H K H ++
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 43  LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
           ++ P+ C  E C++ F     L RH + HT +K F C +C++ F        HI +H  +
Sbjct: 1   MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
             F CD C     R    + H K H ++
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 43  LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
           ++ P+ C  E C++ F     L RH + HT +K F C +C++ F        HI +H  +
Sbjct: 1   MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
             F CD C     R    + H K H ++
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIHLRQ 88

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 46  PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
           P+ C  E C++ F     L RH + HT +K F C +C++ F        HI +H  +  F
Sbjct: 3   PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 104 KCDQCPYVAKRIKYLRYHMKKHRKE 128
            CD C     R    + H K H ++
Sbjct: 63  ACDICGRKFARSDERKRHTKIHLRQ 87

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 43  LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
           ++ P+ C  E C++ F  +  L  H + HT +K F C +C++ F  +A    HI +H  +
Sbjct: 1   MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 101 SEFKCDQC----PYVAKRIKYLRYHMKK 124
             F CD C      +  R ++ + H+++
Sbjct: 61  KPFACDICGRKFATLHTRTRHTKIHLRQ 88

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
           + Y+   E C   F  +  L+TH     G +P+QC  C + F  + SL  H + H   + 
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 187 RLHYQCELCGKSFNNKQT 204
              + C++CG+ F    T
Sbjct: 63  ---FACDICGRKFATLHT 77

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 46  PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
           P+ C  E C++ F     L RH + HT +K F C +C++ F        HI +H  +  F
Sbjct: 4   PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 104 KCDQCPYVAKRIKYLRYHMKKH 125
            CD C     R    + H K H
Sbjct: 64  ACDICGRKFARSDERKRHTKIH 85

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 125 HRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPI 184
           H + Y+   E C   F   D+L  H     G +P+QC  C + F     L TH + H   
Sbjct: 1   HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 185 EERLHYQCELCGKSF 199
           +    + C++CG+ F
Sbjct: 61  KP---FACDICGRKF 72

>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats Of Murine Gli-Kruppel Family Member Hkr3 Length = 124

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Query: 48  KCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHV---TDSEFK 104
           +C  C K+F ++  LK H + HT EK F C  C K +  K    EH A +    ++  F 
Sbjct: 9   ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 105 CDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGA 156
           C  C    +R   LR HM  H  E    C  C + F  +  L++H I  H  
Sbjct: 69  CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 43  LDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSE 102
           ++ P+KC  C K F     L++H++ HT EK + C  C K F   +  ++H  +H  +  
Sbjct: 1   MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHR 126
           +KC +C     R  +L  H + H+
Sbjct: 61  YKCPECGKSFSRSDHLSRHQRTHQ 84

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 43  LDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
           ++ P+ C  E C++ F  +  L  H + HT +K F C +C++ F       +HI +H  +
Sbjct: 1   MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
             F CD C      +     H K H ++
Sbjct: 61  KPFACDICGRKFATLHTRDRHTKIHLRQ 88

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
           + Y+   E C   F  +  L+TH     G +P+QC  C + F     L  H + H   + 
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 187 RLHYQCELCGKSFNNKQT 204
              + C++CG+ F    T
Sbjct: 63  ---FACDICGRKFATLHT 77

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 40  PQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVT 99
           P K      C+ C + F     L  HE+ HT E+ + C +C K F+ +    +H   H  
Sbjct: 11  PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 100 DSEFKCDQC 108
           +  FKC +C
Sbjct: 71  EKPFKCQEC 79

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%)
Query: 99  TDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQP 158
           T  EF C  C     +   L  H + H  E    C+ C + F  +D L  H       +P
Sbjct: 14  TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 159 YQCETCRKLFLSKYSLFTHNKKHL 182
           ++C+ C K F    +L  H   H+
Sbjct: 74  FKCQECGKGFCQSRTLAVHKTLHM 97

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 47  HKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSE 102
           H C++  C K +     LK H + HT EK + C    C   F    +   H   H     
Sbjct: 7   HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 103 FKCDQCPYVAKRIKYLRYHMKKH 125
           F+C +C     R  +L  HMK+H
Sbjct: 67  FQCQKCDRAFSRSDHLALHMKRH 89

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 42  KLDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASH 97
           K    H C++  C K +     LK H + HT EK + C    C   F    +   H   H
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 98  VTDSEFKCDQCPYVAKRIKYLRYHMKKH 125
                F+C +C     R  +L  HMK+H
Sbjct: 61  TGHRPFQCQKCDRAFSRSDHLALHMKRH 88

>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278 Length = 95

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 49  CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH--VTDSEFKCD 106
           CE C K F +   L RH+ +H+ EK + C VC   FK K +   H+ SH       + C 
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 107 QCPYVAKRIKYLRYHMKK 124
            C     R  +L  H+K+
Sbjct: 70  SCGKGFSRPDHLNGHIKQ 87

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 35  SRKSTPQKLDGPHKCE--HCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREE 92
           SRK T +K   P++C+   CE+ F     LKRH++ HT  K F C  C + F      + 
Sbjct: 28  SRKHTGEK---PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84
Query: 93  HIASHVTDSEFKC 105
           H  +H  +  F C
Sbjct: 85  HTRTHTGEKPFSC 97

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
          D P+KC+ C+  F  +  L  H+  HT EK + C +C   F   A  + H   H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 103 FKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCE 162
           F C  C    KR   L  H+  H       C+ C + F  +  ++ H     G +P++C+
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 163 TCRKLFLSKYSLFTHNKKH 181
            C K F    +L TH++KH
Sbjct: 62  VCGKAFSQSSNLITHSRKH 80

>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr, 25 Structures Length = 60

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 49 CEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTK 87
          CE C + F  +  LKRH ++HT EK +PC +C + F  +
Sbjct: 5  CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR 43

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 135 PCQEG--FFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQC 192
           PCQ G  F  + + + H     G +PY C  C K F  K+ L  H K H  I+    Y+C
Sbjct: 12  PCQCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP---YEC 68
Query: 193 ELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSN 233
            +C K F  + +F   + +V S +  Y  + +       S 
Sbjct: 69  NICAKRFMWRDSF---HRHVTSCTKSYEAAKAEQNTTEASG 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	345
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-17
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	1e-11
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-12
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-07
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-11
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	3e-09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-11
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	1e-10
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	7e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	5e-04
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-10
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-10
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-07
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	9e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	3e-10
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-09
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	5e-09
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	8e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	8e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	9e-09
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	8e-06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	5e-05
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-08
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	1e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	7e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	2e-08
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	4e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-08
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	2e-05
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	5e-08
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	7e-05
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	5e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-08
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-07
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	6e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	6e-08
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	3e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	9e-08
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	2e-07
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	7e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	3e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-07
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-05
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	2e-07
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-07
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	6e-05
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	3e-07
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	4e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	7e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	4e-07
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	1e-06
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	3e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	8e-05
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-04
2epa_A	72	Krueppel-like factor 10; transforming growth facto	5e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	8e-07
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	4e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	3e-06
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	8e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	4e-06
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	7e-06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	1e-05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	8e-06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	4e-04
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-05
1ard_A	29	Yeast transcription factor ADR1; transcription reg	2e-05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	3e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	3e-05
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	9e-05
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	3e-05
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	3e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	4e-04
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	7e-04
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	4e-05
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	4e-05
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-05
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-05
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	8e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	1e-04
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-04
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	1e-04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	1e-04
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	1e-04
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-04
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-04
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-04
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	2e-04
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-04
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-04
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-04
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-04
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-04
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-04
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	3e-04
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	4e-04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-04
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	4e-04
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	4e-04
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-04
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	4e-04
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	4e-04
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	4e-04
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	5e-04
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	5e-04
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	5e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	6e-04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	6e-04
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-04
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-04
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-04
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	6e-04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	6e-04
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	7e-04
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	7e-04
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-04
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-04
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	7e-04
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	7e-04
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-04
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	8e-04
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-04
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-04
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-04
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	8e-04
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	8e-04
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	8e-04
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	8e-04
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	9e-04

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 76.7 bits (190), Expect = 6e-17
 Identities = 50/162 (30%), Positives = 69/162 (42%), Gaps = 13/162 (8%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           P+ C  C K F     L  H++ HT EK + C  C K F  K     H  +H  +  +KC
Sbjct: 21  PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
            +C     +   LR H + H  E    C  C + F     L  H     G +PY+C  C 
Sbjct: 81  PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140

Query: 166 KLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
           K F  + +L TH        +R H     Y+C  CGKSF+ +
Sbjct: 141 KSFSREDNLHTH--------QRTHTGEKPYKCPECGKSFSRR 174

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 17/154 (11%)

Query: 56  FENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRI 115
                +          EK + C  C K F       EH  +H  +  +KC +C       
Sbjct: 3   EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62

Query: 116 KYLRYHMKKH--RKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYS 173
           K L  H + H   K Y   C  C + F  R  L  H     G +PY C  C K F     
Sbjct: 63  KDLTRHQRTHTGEKPYK--CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120

Query: 174 LFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
           L  H        +R H     Y+C  CGKSF+ +
Sbjct: 121 LRAH--------QRTHTGEKPYKCPECGKSFSRE 146

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 41/166 (24%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 46  PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCT--VCLKMFKTKAQREEHIASHVTDS 101
            + C    C   +     L+ H   HT EK FPC    C K F +      H  +H  + 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71

Query: 102 EFKCDQ--CPYVAKRIKYLRYHMKKHRKE----YSAYCEPCQEGFFSRDKLETHNIAKHG 155
            F CD   C         ++ H  +        Y  + E C + F   ++L+ H  +   
Sbjct: 72  NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131

Query: 156 AQPYQC--ETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSF 199
             PY+C  E C K F     L  H K H     +    C   GK++
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW 177

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 46  PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCT--VCLKMFKTKAQREEHIASHVTDS 101
            + C  E+C K F+    LK H+ +HTQ+  + C    C K F   ++ + H   H    
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 163

Query: 102 EFKCDQCPYVAKRIKYLRYHMKKHRKE 128
             K D C +V K       H+ +  ++
Sbjct: 164 CKKDDSCSFVGKTWTLYLKHVAECHQD 190

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQ---EKTFPCTVCLKMFKTKAQREEHIASHVTDSE 102
             +CE C      + +L  H++ H +      FPC  C K F+       H +       
Sbjct: 7   GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66

Query: 103 FKCDQCP 109
               +  
Sbjct: 67  LAPQESS 73

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 3/71 (4%)

Query: 69  HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDS---EFKCDQCPYVAKRIKYLRYHMKKH 125
            +      C +C    + KA    H   H        F C+ C    ++   +  H  K 
Sbjct: 2   SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61

Query: 126 RKEYSAYCEPC 136
                   +  
Sbjct: 62  HPALLLAPQES 72

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 18/50 (36%), Positives = 22/50 (44%)

Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQT 204
           G+   QCE C      K SL  H +KH      L + CE CGK F    +
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDS 53

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 9/42 (21%), Positives = 11/42 (26%)

Query: 36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
          RK           CE C K FE   ++  H            
Sbjct: 28 RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 59.4 bits (145), Expect = 2e-11
 Identities = 30/162 (18%), Positives = 45/162 (27%), Gaps = 66/162 (40%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
             +C  C K+F ++  LK H + HT EK F C  C K +  K                  
Sbjct: 7   GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKE----------------- 49

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
                       L  H  ++                       +       Q + C  C+
Sbjct: 50  -----------NLLEHEARN---------------------CMNR----SEQVFTCSVCQ 73

Query: 166 KLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
           + F  +  L  H           H     Y+C  C + F  K
Sbjct: 74  ETFRRRMELRLH--------MVSHTGEMPYKCSSCSQQFMQK 107

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 13/53 (24%)

Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
           G+   +C TC K FLSKY L  H         R H     ++C  CGK +  K
Sbjct: 4   GSSGVECPTCHKKFLSKYYLKVH--------NRKHTGEKPFECPKCGKCYFRK 48

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           P +C  C + F     L  H + HT EK F C +C + F    +R+ H            
Sbjct: 3   PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILE 61

Query: 106 DQCPYVAKRIKYLRYHMKKHR 126
           D+   +  +  +L   + + +
Sbjct: 62  DKVEELLSKNYHLENEVARLK 82

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 14/81 (17%)

Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH--- 189
           C  C   F   D L TH     G +P+ C+ C + F        H          +    
Sbjct: 6   CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH--------RDIQHIL 57

Query: 190 -YQCELCGKSFNNKQTFSLSN 209
               +   +  +  + + L N
Sbjct: 58  PILEDKVEELLS--KNYHLEN 76

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 13/48 (27%)

Query: 158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFN 200
           P+QC  C + F     L TH         R H     + C++CG+ F 
Sbjct: 3   PFQCRICMRNFSRSDHLTTH--------IRTHTGEKPFACDICGRKFA 42

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 19/153 (12%)

Query: 46  PHKCEHCEKEFENRRALKRH---EKNHTQEKTFPCTVC-----LKMFKTKAQREEHIASH 97
             + + C +EF+++  L  H   E  H + K F C        L+ FK +     H+  H
Sbjct: 3   DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62

Query: 98  VTDSEFKCD--QCPYVAKRIKYLRYHMKKH--RKEYSAYCE--PCQEGFFSRDKLETHNI 151
             +   KC    C     R++ L+ H++ H   K Y   CE   C + F +      H  
Sbjct: 63  TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYM--CEHEGCSKAFSNASDRAKHQN 120

Query: 152 AKH-GAQPYQCET--CRKLFLSKYSLFTHNKKH 181
             H   +PY C+   C K +    SL  H K  
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 26/148 (17%)

Query: 72  EKTFPCTVCLKMFKTKAQREEHIAS---HVTDSEFKCDQCPYVA-----KRIKYLRYHMK 123
           E       C + F ++ Q   HI S   H    EF C            K    L  HM+
Sbjct: 1   ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60

Query: 124 KH--RKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCE--TCRKLFLSKYSLFTHNK 179
           +H   K +    E C++ +   + L+TH  +  G +PY CE   C K F +      H  
Sbjct: 61  RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH-- 118

Query: 180 KHLPIEERLH-----YQCEL--CGKSFN 200
                + R H     Y C+L  C K + 
Sbjct: 119 -----QNRTHSNEKPYVCKLPGCTKRYT 141

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 27/80 (33%), Positives = 38/80 (47%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
           PHKCE C K F  +  LK H + HT  K + C  C       +   +H+  H  +  FKC
Sbjct: 8   PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67

Query: 106 DQCPYVAKRIKYLRYHMKKH 125
             CPY ++    L  H++ H
Sbjct: 68  QICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 13/75 (17%)

Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH--- 189
           CE C + F  +DKL+TH     G +PY+C+TC        SL  H         R+H   
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH--------LRIHSDE 62

Query: 190 --YQCELCGKSFNNK 202
             ++C++C  +  N 
Sbjct: 63  RPFKCQICPYASRNS 77

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 41.6 bits (99), Expect = 3e-05
 Identities = 23/113 (20%), Positives = 35/113 (30%), Gaps = 28/113 (24%)

Query: 69  HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
                   C VC K F  K + + H+  H     +KC  C Y A     L  H++ H  E
Sbjct: 3   SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62

Query: 129 YSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
                                       +P++C+ C     +   L  H + H
Sbjct: 63  ----------------------------RPFKCQICPYASRNSSQLTVHLRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 40.5 bits (96), Expect = 6e-05
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 13/53 (24%)

Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
            + P++CE C K F  K  L TH         R H     Y+C+ C  +  + 
Sbjct: 5   SSGPHKCEVCGKCFSRKDKLKTH--------MRCHTGVKPYKCKTCDYAAADS 49

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 37.0 bits (87), Expect = 9e-04
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
          P KC+ C     N   L  H ++HT +     
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 47  HKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSE 102
           + C  E+C K F+    LK H+ +HTQ+  + C    C K F   ++ + H   H     
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61

Query: 103 FKCDQCPYVAKRIKYLRYHMKK 124
            K D C +V K       H+ +
Sbjct: 62  KKDDSCSFVGKTWTLYLKHVAE 83

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHI 94
          P++C H  C+K F     LKRHEK H          C  + KT     +H+
Sbjct: 31 PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 38/161 (23%)

Query: 52  CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYV 111
                +  +     +     + + P   C + F T  +   H+         + +   Y 
Sbjct: 3   SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62

Query: 112 AKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQC--ETCRKLF 168
            +                   C    + F ++ KL  H I  H G +P+ C    C K+F
Sbjct: 63  EE-------------------CPREGKSFKAKYKLVNH-IRVHTGEKPFPCPFPGCGKIF 102

Query: 169 LSKYSLFTHNKKHLPIEERLH-----YQCEL--CGKSFNNK 202
               +L  H         R H     ++CE   C + F N 
Sbjct: 103 ARSENLKIHK--------RTHTGEKPFKCEFEGCDRRFANS 135

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 28/149 (18%), Positives = 42/149 (28%), Gaps = 41/149 (27%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTF---------PCTVCLKMFKTKAQREEHIAS 96
               + C++ F     L  H                    C    K FK K +   HI  
Sbjct: 25  SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84

Query: 97  HVTDSEFKCD--QCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH 154
           H  +  F C    C  +  R + L+ H + H                      T      
Sbjct: 85  HTGEKPFPCPFPGCGKIFARSENLKIHKRTH----------------------T------ 116

Query: 155 GAQPYQCET--CRKLFLSKYSLFTHNKKH 181
           G +P++CE   C + F +      H   H
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKHMHVH 145

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 33  KRSRKSTPQKLDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKA 88
                    +    H C++  C K +     LK H + HT EK + CT   C   F    
Sbjct: 2   SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61

Query: 89  QREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKH 125
           +   H   H     F+C  C     R  +L  HMK+H
Sbjct: 62  ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 13/85 (15%)

Query: 121 HMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQC--ETCRKLFLSKYSLFTH 177
              + R+ +      C + +     L+ H +  H G +PY+C  E C   F     L  H
Sbjct: 8   PDLEKRRIHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRH 66

Query: 178 NKKHL---PIEERLHYQCELCGKSF 199
            +KH    P      +QC +C +SF
Sbjct: 67  YRKHTGAKP------FQCGVCNRSF 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 51.3 bits (124), Expect = 8e-09
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 46  PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
           P+ C  E C++ F    +L RH + HT +K F C +C++ F        HI +H  +  F
Sbjct: 4   PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63

Query: 104 KCDQCPYVAKRIKYLRYHMKKHRKE 128
            CD C     R    + H K H ++
Sbjct: 64  ACDICGRKFARSDERKRHTKIHLRQ 88

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
           + Y+   E C   F     L  H     G +P+QC  C + F     L TH         
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--------I 54

Query: 187 RLH-----YQCELCGKSFN 200
           R H     + C++CG+ F 
Sbjct: 55  RTHTGEKPFACDICGRKFA 73

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 51.3 bits (124), Expect = 9e-09
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSE--F 103
              CE C K F +   L RH+ +H+ EK + C VC   FK K +   H+ SH       +
Sbjct: 7   GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66

Query: 104 KCDQCPYVAKRIKYLRYHMKK 124
            C  C     R  +L  H+K+
Sbjct: 67  ICQSCGKGFSRPDHLNGHIKQ 87

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQC 192
           CE C + F     L  H ++  G +PY C  C   F  K  +  H + H        Y C
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG-SVGKPYIC 68

Query: 193 ELCGKSFN 200
           + CGK F+
Sbjct: 69  QSCGKGFS 76

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 26/112 (23%)

Query: 69  HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
            +      C +C K+F+       H  SH  +  + C  C    KR   + YH++ H   
Sbjct: 2   SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61

Query: 129 YSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKK 180
                                       +PY C++C K F     L  H K+
Sbjct: 62  --------------------------VGKPYICQSCGKGFSRPDHLNGHIKQ 87

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 13/51 (25%)

Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFN 200
           G+    CE C K+F   Y L  H        +  H     Y C +CG  F 
Sbjct: 4   GSSGVACEICGKIFRDVYHLNRH--------KLSHSGEKPYSCPVCGLRFK 46

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 46  PHKCEH--CEKEFENRRALKRHEK-NHTQEKTFPCT--VCLKMFKTKAQREEHIASHVTD 100
              C+   C + F NR+ L  H+K  H  +K+F C    C K F  K   +EH+  H   
Sbjct: 7   GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66

Query: 101 SEFKCDQC 108
            ++ C+  
Sbjct: 67  RDYICEFS 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
             C    C K F  ++ LK H K H+  + + C       
Sbjct: 38 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 16/81 (19%)

Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQCE--TCRKLFLSKYSLFTHNKKHLP 183
                    C   F +R  L  H   +H   + + C    C K F  K  L  H      
Sbjct: 6   SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH------ 59

Query: 184 IEERLH-----YQCELCGKSF 199
              +LH     Y CE  G S 
Sbjct: 60  --MKLHSDTRDYICEFSGPSS 78

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 46 PHKCEHCEKEFENRRALKRHEKN--HTQEKTFPCTVCLKMFKTKAQREEHIASH 97
           ++C+ C + + +     RH         K +PC  C K F  K     H+   
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 66  EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSE--FKCDQCPYVAKRIKYLRYHMK 123
           E     E T+ C VC +++   +    H  +    +   + C  C     R   +  H+K
Sbjct: 2   EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61

Query: 124 KHRK 127
              K
Sbjct: 62  IIHK 65

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK 202
           G   Y+C+ C +++    +   H         ++ Y C  C K F  K
Sbjct: 7   GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRK 53

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 50.1 bits (121), Expect = 4e-08
 Identities = 31/162 (19%), Positives = 45/162 (27%), Gaps = 72/162 (44%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
            + C+ C K F ++    RH   H   + + C VC K FK K         H        
Sbjct: 10  LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMK--------HH-------- 52

Query: 106 DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCR 165
                       L  HMK H                      T      G +PY+C  C 
Sbjct: 53  ------------LVGHMKIH----------------------T------GIKPYECNICA 72

Query: 166 KLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
           K F+ + S   H          +      Y+     ++    
Sbjct: 73  KRFMWRDSF--H--------RHVTSCTKSYEAAKAEQNTTEA 104

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 14/78 (17%)

Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH--- 189
           C+ C + F  + + + H     G +PY C  C K F  K+ L  H         ++H   
Sbjct: 13  CQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH--------MKIHTGI 63

Query: 190 --YQCELCGKSFNNKQTF 205
             Y+C +C K F  + +F
Sbjct: 64  KPYECNICAKRFMWRDSF 81

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 49.5 bits (117), Expect = 5e-08
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 33  KRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREE 92
             S  ++P +    ++C  C  +  +      HE+         C  C   F +   ++E
Sbjct: 3   SGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQE 60

Query: 93  HIASHVTDSEFKCDQCPYVAKRIKYLRYHMKK 124
           H +      +  C +C    K    +  H  +
Sbjct: 61  HESKC-EYKKLTCLECMRTFKSSFSIWRHQVE 91

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 107

 Score = 40.7 bits (94), Expect = 7e-05
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 88  AQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLE 147
           +      +       ++C  C      +     H +  R      C  C   FFS +  +
Sbjct: 2   SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQ 59

Query: 148 THNIAKHGAQPYQCETCRKLFLSKYSLFTHNKK 180
            H  +K   +   C  C + F S +S++ H  +
Sbjct: 60  EHE-SKCEYKKLTCLECMRTFKSSFSIWRHQVE 91

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 49.8 bits (120), Expect = 5e-08
 Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 38/144 (26%)

Query: 46  PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDS 101
           P  C +  C K +     L+ H + HT EK + C    C + F                 
Sbjct: 6   PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRS--------DQ---- 53

Query: 102 EFKCDQCPYVAKRIKYLRYHMKKH--RKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPY 159
                           L+ H ++H   K +   C+ CQ  F   D L+TH     G +P+
Sbjct: 54  ----------------LKRHQRRHTGVKPFQ--CKTCQRKFSRSDHLKTHTRTHTGEKPF 95

Query: 160 QCET--CRKLFLSKYSLFTHNKKH 181
            C    C+K F     L  H+  H
Sbjct: 96  SCRWPSCQKKFARSDELVRHHNMH 119

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 48.7 bits (117), Expect = 6e-08
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 62  LKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSE--FKCDQCPYVAKRIKYLR 119
                + H+ EK + C +C   F      + HI    T++   F C  C  V  R   L 
Sbjct: 3   SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62

Query: 120 YHMKKH 125
            H++K 
Sbjct: 63  VHLRKQ 68

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQE--KTFPCTVCLKMFKTKAQREEHI 94
          P++C  C   F     +K H      E    F C  C  +   K+    H+
Sbjct: 15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK 202
           G +PY+C  C   F    ++  H  +    E    + C  C      K
Sbjct: 12  GEKPYECYICHARFTQSGTMKMHILQK-HTENVAKFHCPHCDTVIARK 58

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 6/68 (8%)

Query: 118 LRYHMKKHRKE--YSAYCEPCQEGFFSRDKLETHNIAKHG--AQPYQCETCRKLFLSKYS 173
                + H  E  Y   C  C   F     ++ H + KH      + C  C  +   K  
Sbjct: 3   SGSSGRTHSGEKPYE--CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60

Query: 174 LFTHNKKH 181
           L  H +K 
Sbjct: 61  LGVHLRKQ 68

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 48.3 bits (116), Expect = 6e-08
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIA 95
             +      P KC  C     ++ AL+ HE+ H  ++ F C  C    K  +   +H+ 
Sbjct: 2  SSGSSGH---PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

Query: 96 SH 97
            
Sbjct: 59 KF 60

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 14/57 (24%)

Query: 152 AKH-GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
           +      P +C  C     SK +L  H        ER+H     ++C  C       
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIH--------ERIHCTDRPFKCNYCSFDTKQP 50

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P KC +C  + +    L +H K    + + P +
Sbjct: 37 PFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 49.0 bits (116), Expect = 9e-08
 Identities = 19/132 (14%), Positives = 30/132 (22%), Gaps = 27/132 (20%)

Query: 62  LKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH--IASHVTDSEFKCDQCPYVAKRIKYLR 119
            K +    T    F C  C   + T  +   H     H  D   + D             
Sbjct: 7   GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNN----------- 55

Query: 120 YHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNK 179
                          P +     +  L      +   +  +C  C   F S   L  H  
Sbjct: 56  --------------NPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101

Query: 180 KHLPIEERLHYQ 191
           K    ++     
Sbjct: 102 KTKHYQKVSGPS 113

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 5/86 (5%)

Query: 46  PHKCEHCEKEFENRRALKRH-----EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD 100
             +C+ C   ++    L  H            +T            K    E        
Sbjct: 19  KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78

Query: 101 SEFKCDQCPYVAKRIKYLRYHMKKHR 126
              KC  C +  + ++ L  HM K +
Sbjct: 79  KVLKCMYCGHSFESLQDLSVHMIKTK 104

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETH-NIAKH----GAQPYQCETCRKLFLSKY 172
            + +           C+ C   + +  +L  H N   H      +       R     K 
Sbjct: 7   GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66

Query: 173 SLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS 206
           SL     K    +     +C  CG SF + Q  S
Sbjct: 67  SLLEMEGKEDAQKV---LKCMYCGHSFESLQDLS 97

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 8/64 (12%), Positives = 14/64 (21%)

Query: 34  RSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
                                    +R+L   E     +K   C  C   F++      H
Sbjct: 40  NETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99

Query: 94  IASH 97
           +   
Sbjct: 100 MIKT 103

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEF 103
                 C K +     LK H + HT EK + C    C   F    +   H   H     F
Sbjct: 7   TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66

Query: 104 KCDQCPYVAKRIKYLRYHMKKH 125
           +C +C     R  +L  HMK+H
Sbjct: 67  QCQKCDRAFSRSDHLALHMKRH 88

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 32/117 (27%)

Query: 69  HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
            T   T     C K + TK+       SH                    L+ H++ H  E
Sbjct: 2   RTATHTCDYAGCGKTY-TKS-------SH--------------------LKAHLRTHTGE 33

Query: 129 --YSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQCETCRKLFLSKYSLFTHNKKHL 182
             Y    + C   F   D+L  H   KH G +P+QC+ C + F     L  H K+H 
Sbjct: 34  KPYHCDWDGCGWKFARSDELTRH-YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 124 KHRKEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQC--ETCRKLFLSKYSLFTHNKK 180
           K    ++     C + +     L+ H +  H G +PY C  + C   F     L  H +K
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59

Query: 181 HL---PIEERLHYQCELCGKSF 199
           H    P      +QC+ C ++F
Sbjct: 60  HTGHRP------FQCQKCDRAF 75

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 48

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 32 KKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC 80
            R+RK           CE C K F +   L RH+ +H+ EK +     
Sbjct: 6  SGRTRK--------QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
             CE C + F  +  LKRH ++HT EK +PC +C + F  +     H
Sbjct: 2  SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 13/48 (27%)

Query: 158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFN 200
            + CE C + F  +  L  H         R H     Y C LC ++F 
Sbjct: 2   SFVCEVCTRAFARQEHLKRH--------YRSHTNEKPYPCGLCNRAFT 41

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 46 PHKCEHCEKEFENRRALKRHEKN-HTQEKTFPCTVCLKMFKT 86
          P+ C+ C K F     L  H K  HT E+   C V +    +
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 12/49 (24%)

Query: 158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNN 201
           PY C++C K F     L  H K       ++H     ++C++     ++
Sbjct: 12  PYICQSCGKGFSRPDHLNGHIK-------QVHTSERPHKCQVWVSGPSS 53

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 47.5 bits (114), Expect = 4e-07
 Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEF 103
            H C  C K F     LKRH+  HT EK F CT   C K F        H+  H  D  +
Sbjct: 34  VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93

Query: 104 KC--DQCPYVAKRIKYLRYHMKKHRKE 128
            C  D C     +   L+ H+  H K 
Sbjct: 94  VCPFDGCNKKFAQSTNLKSHILTHAKA 120

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 35/142 (24%)

Query: 46  PHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF 103
              C H  C K F +  A+++H   H   +   C  C K F   ++ + H   H  +  F
Sbjct: 5   TIACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63

Query: 104 KC--DQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQC 161
           +C  + C         LR H++ H                      T      G +PY C
Sbjct: 64  QCTFEGCGKRFSLDFNLRTHVRIH----------------------T------GDRPYVC 95

Query: 162 ET--CRKLFLSKYSLFTHNKKH 181
               C K F    +L +H   H
Sbjct: 96  PFDGCNKKFAQSTNLKSHILTH 117

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 18/88 (20%)

Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEE 186
           +  +   + C + F     +  H    HG + + C  C K F+    L  H        +
Sbjct: 4   RTIACPHKGCTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRH--------Q 54

Query: 187 RLH-----YQCEL--CGKSFNNKQTFSL 207
            +H     +QC    CGK F+    F+L
Sbjct: 55  LVHTGEKPFQCTFEGCGKRFS--LDFNL 80

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQE----KTFPCTVCLKMFKTKAQREEHIASHVTDS 101
           P+ C HC+K F  ++ L  H K +         F C+ C K F  +     H  +     
Sbjct: 15  PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74

Query: 102 EFKCDQC 108
             + +  
Sbjct: 75  GVEGENS 81

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 20/143 (13%), Positives = 31/143 (21%), Gaps = 65/143 (45%)

Query: 62  LKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYH 121
                + HT EK + C+ C K F+ K                              L  H
Sbjct: 3   SGSSGRTHTGEKPYACSHCDKTFRQKQ----------------------------LLDMH 34

Query: 122 MKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
            K++                                 + C  C K F  + ++  H    
Sbjct: 35  FKRYHDP------------------------NFVPAAFVCSKCGKTFTRRNTMARH---- 66

Query: 182 LPIEERLH-----YQCELCGKSF 199
                         + E  G S 
Sbjct: 67  ----ADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 8/39 (20%), Positives = 9/39 (23%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
             C  C K F  R  + RH  N                
Sbjct: 47 AFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHL-PIEERLHYQCELCGKSFNNKQT 204
           G +PY C  C K F  K  L  H K++  P      + C  CGK+F  + T
Sbjct: 12  GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 46.7 bits (112), Expect = 5e-07
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC 105
              C+ C + F     L  HE+ HT E+ + C +C K F+ +    +H   H  +  FKC
Sbjct: 17  EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76

Query: 106 DQC 108
            +C
Sbjct: 77  QEC 79

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 17/91 (18%)

Query: 117 YLRYHMKKH--RKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSL 174
                      +KE+   C+ C   F     L  H       +PY C+ C K F  +  L
Sbjct: 4   GSSGGRLPSKTKKEFI--CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61

Query: 175 FTHNKKHLPIEERLH-----YQCELCGKSFN 200
             H          +H     ++C+ CGK F 
Sbjct: 62  RDH--------RYIHSKEKPFKCQECGKGFC 84

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
          P+ C+ C K F  +  L+ H   H++EK F C  C K F
Sbjct: 45 PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF 83

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 40.5 bits (96), Expect = 8e-05
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 13/53 (24%)

Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
             + + C+ C + F   Y+L  H        ER H     Y C++C K+F  +
Sbjct: 14  TKKEFICKFCGRHFTKSYNLLIH--------ERTHTDERPYTCDICHKAFRRQ 58

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 14/33 (42%)

Query: 46  PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
           P KC+ C K F   R L  H+  H Q  +    
Sbjct: 73  PFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens} Length = 72

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 28 SGEVKKRSRKSTPQKLDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKM 83
          S         S+  +    H C H  C K +     LK H + HT EK F C+   C + 
Sbjct: 2  SSGSSGPQIDSSRIR---SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERR 58

Query: 84 FKTKAQREEHIASH 97
          F    +   H  +H
Sbjct: 59 FARSDELSRHRRTH 72

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 46 PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHV 98
          P+ C  E C++ F     L RH + HT +K F C +C++ F     R +H+ +H+
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF----SRSDHLTTHI 69

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQCETCRKLFLSKYSLFT 176
           L  ++    + Y+   E C   F   D+L  H I  H G +P+QC  C + F     L T
Sbjct: 9   LLNYVVPKMRPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTT 67

Query: 177 HNKKH 181
           H + H
Sbjct: 68  HIRTH 72

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
          P+KC+ C+  F  +  L  H+  HT EK + C +C   F   A  + H
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 146 LETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFN 200
              H+   H  +PY+C+ C+  F  K +L +H        + +H     Y+C +CG  FN
Sbjct: 5   HHHHSHMTHSDKPYKCDRCQASFRYKGNLASH--------KTVHTGEKPYRCNICGAQFN 56

Query: 201 NK 202
             
Sbjct: 57  RP 58

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 17/65 (26%), Positives = 27/65 (41%)

Query: 117 YLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFT 176
           +  +H      +    C+ CQ  F  +  L +H     G +PY+C  C   F    +L T
Sbjct: 4   HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63

Query: 177 HNKKH 181
           H + H
Sbjct: 64  HTRIH 68

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEH 93
          P+ C  C K F     L +H++ HT EK + C  C K F   +    H
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 13/53 (24%)

Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
           G +PY C  C K F     L  H        +R+H     Y+C  CGK+F+  
Sbjct: 11  GEKPYGCVECGKAFSRSSILVQH--------QRVHTGEKPYKCLECGKAFSQN 55

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 42.8 bits (102), Expect = 7e-06
 Identities = 22/78 (28%), Positives = 33/78 (42%)

Query: 48  KCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ 107
            C+ C K F+    L  H   H+  + +PC  C K F  K+  ++H   H  +   KC  
Sbjct: 3   DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62

Query: 108 CPYVAKRIKYLRYHMKKH 125
           C     +   L  H +KH
Sbjct: 63  CGKAFSQSSNLITHSRKH 80

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
          P+ C++C K F  +  +K+H   HT EK   C VC K F
Sbjct: 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAF 67

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 13/75 (17%)

Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH--- 189
           C+ C + F     L TH +     +PY C+ C K F  K  +  H          +H   
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH--------TFIHTGE 55

Query: 190 --YQCELCGKSFNNK 202
             ++C++CGK+F+  
Sbjct: 56  KPHKCQVCGKAFSQS 70

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 42.0 bits (98), Expect = 8e-06
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 47 HKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
          + CE C    +    LK+H + HT  + + CT C   FKTK    +H+ S 
Sbjct: 2  YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 13/52 (25%), Positives = 19/52 (36%)

Query: 77  CTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE 128
           C  C    K  +  ++HI +H     + C  C +  K    L  HMK     
Sbjct: 4   CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+ C  C K F     L  H K H +EK+   +
Sbjct: 12 PYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Length = 29

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
             CE C + F  +  LKRH ++HT EK
Sbjct: 2  SFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 5/45 (11%)

Query: 36 RKSTPQKLDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCT 78
             T +K   P  C    C   F     L RH ++H+  K    +
Sbjct: 5  SSGTGEK---PFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMF 84
           +KC+ C K F +   L +H + HT EK + C  C K F
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.3 bits (93), Expect = 9e-05
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 13/53 (24%)

Query: 155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLH-----YQCELCGKSFNNK 202
             + Y+C+ C K F     L  H         R H     Y+C+ CGK+F  +
Sbjct: 15  ERRRYKCDECGKSFSHSSDLSKH--------RRTHTGEKPYKCDECGKAFIQR 59

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 9/71 (12%)

Query: 44  DGPHKCEHCEKEFENRRALKRH-EKNHTQEKTFP--------CTVCLKMFKTKAQREEHI 94
                 + C++ F     L  H    H               C    K FK K +   HI
Sbjct: 23  QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82

Query: 95  ASHVTDSEFKC 105
             H  +     
Sbjct: 83  RVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 23/96 (23%)

Query: 68  NHTQEKTFPCTVCLKMFKTKAQREEHIAS-HVTDSEFKCDQCPYVAKRIKYLRYHMKKHR 126
               + + P   C + F T  +   H+   HV   E     C +                
Sbjct: 19  IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE-------------- 64

Query: 127 KEYSAYCEPCQEGFFSRDKLETHNIAKH-GAQPYQC 161
                 C    + F ++ KL  H I  H G +    
Sbjct: 65  ------CPREGKSFKAKYKLVNH-IRVHTGEKSGPS 93

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 154 HGAQPYQCETCRKLFLSKYSLFTH-NKKHLPIEERLHYQCE-----LCGKSFNNKQ 203
                   ++C + F + + L TH   +H+   E+ ++ C        GKSF  K 
Sbjct: 21  EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 95

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 49 CEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          C    K F+ +  L  H + HT EK+ P +
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 10/72 (13%)

Query: 26 GSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFK 85
          GSSG   KR +     +     KC  C   F             ++ KT  C  C K   
Sbjct: 1  GSSGSSGKRQKIHLGDR---SQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSC 50

Query: 86 TKAQREEHIASH 97
           +A   +   + 
Sbjct: 51 QEAALNKDEGNE 62

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 39.4 bits (93), Expect = 4e-05
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P +C HC K F  +  L  H++ HT EK+ P +
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 6e-05
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P +C  C+K F  +  L  H++ HT EK    +
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 8e-05
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P KC+ C K F  R  L RH   HT EK    +
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  CEK F  +  L  H++ HT+EK    +
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 42  KLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
           K      C  C   F +  +LK+H +     K   C VC K F +     +H+   
Sbjct: 70  KAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKK 123

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
          P++C+ C K F     L +H++ HT E++   
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
           H+C  C + F  +  L +H++ HT EK    +
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+ C  C K F  R  L +H+K HT++K    +
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
          P+ CE C   F + + LK H + HT   
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIHTGSG 38

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
            KC  C+  F    +L+ H+  H  EK    +
Sbjct: 12 TWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KCE C K +  R  L  H++ H  EKT   +
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens} Length = 30

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
          P+ C HC+++F +  AL+RH + HT EK
Sbjct: 3  PYVCIHCQRQFADPGALQRHVRIHTGEK 30

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 11/143 (7%)

Query: 193 ELCGKSFNNKQTFSLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYV 252
           + C ++        L         N+ +   S M  L    +    L+     S   +  
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 253 LSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLS 312
             L+N+  +SL+ + +  L +  V        LS+       L     L L  +  L+L+
Sbjct: 282 HCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIR---CQLKQFPTLDLPFLKSLTLT 336

Query: 313 N------MYVLSLSNMYVLSLSN 329
                     ++L ++  L LS 
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSR 359

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F  R +L  H+  H+ EK    +
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
          P +C+ C   F    +L +H ++H +      
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KCE C K F  RR L  H   HT EK    +
Sbjct: 12 PYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P KC  C K F  R AL  H K HT EK    +
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F  +  L+ H+K HT E+    +
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
           + C  C K F     L RH+K HT++     
Sbjct: 12 SYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVL--SLSNMYVLSL 263
            L N++ + LS    L  +      + ++  L L +V L +  +       L N+ +L L
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 264 SNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 321
           SN  + ++++  +  L  + +L L +  +  L           ++  LS++++L+L +
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 205 FSLSNMYVLSLSN--MYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNMYVLS 262
            + +++  LSLSN  +   S++    L  +N+ +L LS   LN   N     L  +    
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 263 LSNMYVLSLSNMYVLSLSNMYVLSLS-NMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN 321
           L    +  L +  +  L N+  L+L  +    S+S   +  + +     L  +  L++ +
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P++C  C K F  R +L  H+  HT +K    +
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 10/28 (35%), Positives = 12/28 (42%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
          P+KCE C   F     L+ H   HT   
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLIHTGSG 38

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K ++ R  L  H++ HT EK    +
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P  C  C K F ++  L  H+K HT E+    +
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P  C  CEK F ++  L  H++ H +EK    +
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 25/139 (17%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 206 SLSNMYVLSLSNMYVLSSSNMYVLSLSNMYVLSLSKVRLNSSS--NMYVLSLSNMYVLSL 263
           SL  + V +      +    + VL +S +  L+L  + +  ++   +   +  ++ +L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 264 SNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSNMYVLSLSN-- 321
            N+   +        L+ +       + VLS++  + L+ S   V     +  L LS+  
Sbjct: 129 RNVSWATRDA----WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 322 -MYVLSLSNMLSSDPLPEL 339
            +    L + L     P L
Sbjct: 185 ELGERGLISALCPLKFPTL 203

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
          P++C  C K F +R  L  H+K HT EK    
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KCE C K + ++  L  H+K HT E+    +
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P++C  C K F +R++L  H++ H+ +K    +
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F  +  L  H+++HT E+    +
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P KC  C K F  +  L  H++ H  +K    +
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
          P+ C  C K F +R  L +H+K HT EK    
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+ C  C K F     L +H + HTQE     +
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P++C+ C K F  +  L +H+K HT EK    +
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+ C  C K F ++  L  H + H+ EK    +
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+ CE C K F +   L+ H++ HT EK    +
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
            +C  C K F  +  L  H+K HT EK    +
Sbjct: 12 HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
          P KC  C++ F  R  L +HE+ H ++ 
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHARKS 39

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P  C  C K F +   L +H + HT EK    +
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F     L  H+  HT EK    +
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P++C  C K F+ + +L  H ++HT EK    +
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC+ C K F    +L  H++ HT EK    +
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F     L RH   HT EK    +
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F +   L RH++ HT EK    +
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F +  +  +H++ HT ++    +
Sbjct: 12 PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P++C  C K F  +  L  H++ HT EK    +
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P KC+ C K F     L  H + HT EK    +
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P++C+ C K F +  +L +H++ H+ EK    +
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
           ++C  C K F  +  L  H++ H  EK    +
Sbjct: 12 HYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+ C  C K F  +  L  H+++HT  K    +
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
           +KC+ C KEF     L+ H++ HT EK    +
Sbjct: 12 CYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P KC  C K F  R  L  H + H++EK+   +
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F     L RH   HT EK    +
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          PH+C  C K F     L  H++ HT E     +
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 20/160 (12%), Positives = 43/160 (26%), Gaps = 30/160 (18%)

Query: 206 SLSNMYVLSLSN-------MYVLSSSNMYVLSLSNMYVLSLSKVRLNSSSNMYVLSLSNM 258
           S+S M  +  S               +       N+  ++LS  +++        + S +
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 259 YVLSLSN-------MYVLSLSNMYVLSLSNMYVLSLSN---------MYVLSLSNMYVLS 302
             ++L            L   N    +   +  + L               +L  +  + 
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 303 LSN-------MYVLSLSNMYVLSLSNMYVLSLSNMLSSDP 335
           LS           L+ S +    + N      +  L   P
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P KC  C K +  R  L +H++ HT EK    +
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P +CE C K F     L  H++ HT EK    +
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+ C+ C K F     L +H++ H+ EK    +
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P++C+ C K F     L +H++ HT EK    +
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
           + C+ C K F     L +HE+ H+ EK    +
Sbjct: 12 LYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
          P++C  C+K F  +  L  H++ HT E     
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC+ C K F     L +H   H+ E+    +
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F     L RH+  HT EK    +
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
            KC  C+K F    +L  H++ HT EK    +
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+ C  C K F  +  L RH + HT EK    +
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 13/33 (39%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F     L RH   HT EK    +
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P KCE C K F        H+++H+ EK    +
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F     L  H + HT  +    +
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P +C  C K F     L  H++ HT EK    +
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F     L RH + HT  K    +
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPC 77
          P+ C  C K F ++  L  H + HT E     
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.9 bits (84), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+KC  C K F     L  H + HT EK    +
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+ C++C K F     L RH++ HT EK    +
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 35.7 bits (83), Expect = 8e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
          P+ C  C K F  R +L  H+++ +Q  
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSCSQSG 38

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 9e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT 78
          P+ C  C K F  +  L  H++ HT EK    +
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	345
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	100.0
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.97
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.89
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.88
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.86
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.86
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.86
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.82
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.77
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.73
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.72
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.72
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.72
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.72
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.72
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.71
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.7
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.69
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.69
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.68
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.67
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.66
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.66
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.64
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.62
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.61
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.6
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.57
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.57
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.54
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.53
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.53
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.52
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.5
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.49
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.49
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.48
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.43
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.43
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.42
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.41
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.41
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.41
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.4
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.39
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.38
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.37
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.37
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.37
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.37
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.37
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.36
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.35
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.35
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.33
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.32
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.32
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.32
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.3
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.3
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.27
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.26
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.25
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.25
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.2
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.19
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.19
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.11
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.11
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.1
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.07
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.06
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.01
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.97
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.96
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.94
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.94
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.94
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.94
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.94
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.93
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.93
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.93
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.93
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.93
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.92
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.92
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.91
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.91
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.91
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.9
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.9
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.9
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.9
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.88
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.87
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.87
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.87
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.86
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.86
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.85
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.84
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.84
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.84
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.82
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.8
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.8
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.8
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.8
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.79
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.79
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.78
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.78
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.78
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.78
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.78
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.77
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.77
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.77
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.76
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.76
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.76
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.76
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.76
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.76
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.75
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.75
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.75
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.74
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.74
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.74
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.74
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.74
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.72
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.72
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.71
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.71
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.71
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.71
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.7
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.7
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.7
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.7
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.69
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.69
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.69
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.67
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.67
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.66
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.65
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.65
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.65
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.64
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.64
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.63
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.63
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.61
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.61
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.61
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.61
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.6
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.6
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.59
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.58
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.58
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.58
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.58
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.57
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.56
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.55
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.55
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.55
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.54
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.54
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.53
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.53
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.51
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.5
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.47
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.47
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.44
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.38
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.28
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.26
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.23
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.21
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.21
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.17
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.15
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.12
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.1
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.09
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.09
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.05
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.05
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.03
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.01
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.01
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.96
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.96
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.93
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.91
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.9
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.9
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.88
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.88
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.88
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.87
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.85
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.83
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.8
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.8
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.76
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.76
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.75
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.75
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.74
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.72
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.72
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.71
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.7
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.7
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.69
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.69
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.68
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.85
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.65
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.65
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.65
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.64
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.64
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.62
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.61
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.6
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.6
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.59
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.74
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.73
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.71
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.55
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.7
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.7
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.54
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.53
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.51
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.5
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.37
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.37
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.35
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.32
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.31
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.16
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.84
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.79
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.91
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	95.27
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.02
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	94.73
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.15
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.69
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	93.02
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.22
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.22
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	88.31
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	85.57
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	85.28
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	81.53

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=100.00  E-value=2.1e-36  Score=264.27  Aligned_cols=179  Identities=27%  Similarity=0.560  Sum_probs=148.5

Q ss_pred             cccccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCccccc
Q psy4572          34 RSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAK  113 (345)
Q Consensus        34 ~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~  113 (345)
                      +..+...+.++++|.|+.|++.|.....|..|++.|+++++|.|+.|++.|.+...|..|++.|+++++|.|+.|++.|.
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   88 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFS   88 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccC
Confidence            33445556677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         114 RIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       114 ~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      +...|..|++.|.++++|.|+.|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|++.|+   ++++|.|+
T Consensus        89 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~---~~~~~~C~  165 (190)
T 2i13_A           89 QRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT---GEKPYKCP  165 (190)
T ss_dssp             CHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHH---CCCCEECT
T ss_pred             CHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcC---CCCCeECC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998   67899999


Q ss_pred             ccccccCCHHHHHHHHHHhcCC
Q psy4572         194 LCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       194 ~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      .|++.|.++..|.+|++.|++.
T Consensus       166 ~C~~~f~~~~~L~~H~~~H~~~  187 (190)
T 2i13_A          166 ECGKSFSRRDALNVHQRTHTGK  187 (190)
T ss_dssp             TTCCEESSHHHHHHHHTTC---
T ss_pred             CCCCccCCHHHHHHHHHhcCCC
Confidence            9999999999999999998764

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.97  E-value=1.9e-31  Score=232.83  Aligned_cols=168  Identities=25%  Similarity=0.461  Sum_probs=156.2

Q ss_pred             CCCCCceec--cccccccCCHHHHHHHHHHcCCCCceec--cccccccCCHHHHHHHHHhcCCCCCccCC--CCcccccC
Q psy4572          41 QKLDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPC--TVCLKMFKTKAQREEHIASHVTDSEFKCD--QCPYVAKR  114 (345)
Q Consensus        41 ~~~~~~~~C--~~C~k~F~~~~~L~~H~~~h~~~k~~~C--~~C~k~F~~~~~L~~H~~~h~~~k~~~C~--~C~~~f~~  114 (345)
                      ....++|.|  +.|++.|.....|..|++.|+++++|.|  +.|++.|.+...|..|++.|+++++|.|+  .|++.|.+
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   86 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT   86 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESC
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCC
Confidence            344678999  7899999999999999999999999999  88999999999999999999999999999  89999999


Q ss_pred             HHHHHHHH-HHh-cCCCcccc--CCCCCCcCCHHHHHHHHHHhcCCCCCCCcc--hhhccCCHHHHHHHHhhhCCCCcCc
Q psy4572         115 IKYLRYHM-KKH-RKEYSAYC--EPCQEGFFSRDKLETHNIAKHGAQPYQCET--CRKLFLSKYSLFTHNKKHLPIEERL  188 (345)
Q Consensus       115 ~~~L~~H~-~~h-~~~~~~~C--~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~--Cgk~F~s~s~L~~H~~~H~~~~~~k  188 (345)
                      ...|..|+ +.| .++.+|.|  +.|++.|.+...|..|++.|+++++|.|+.  |++.|.+...|..|+++|+   +  
T Consensus        87 ~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~---~--  161 (190)
T 1tf6_A           87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA---G--  161 (190)
T ss_dssp             HHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSC---S--
T ss_pred             HHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhC---C--
Confidence            99999999 556 36789999  899999999999999999999999999988  9999999999999999997   3  


Q ss_pred             eeecCc---cccccCCHHHHHHHHHHhcC
Q psy4572         189 HYQCEL---CGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       189 ~y~C~~---Cgk~F~~~~~L~~H~~~~H~  214 (345)
                       |.|+.   |++.|.+...|.+|++.||+
T Consensus       162 -~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          162 -YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             -CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             -CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence             89999   99999999999999999885

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=7.4e-31  Score=229.00  Aligned_cols=167  Identities=28%  Similarity=0.555  Sum_probs=145.3

Q ss_pred             CCCCCCCCccccccccccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          21 NGAPGGSSGEVKKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      ++..+........+..+...+.++++|.|+.|++.|.....|..|++.|+++++|.|+.|++.|.+...|..|++.|+++
T Consensus        24 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~  103 (190)
T 2i13_A           24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE  103 (190)
T ss_dssp             -------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTC
T ss_pred             CCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCC
Confidence            33444455555666777777888899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhh
Q psy4572         101 SEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKK  180 (345)
Q Consensus       101 k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~  180 (345)
                      ++|.|+.|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|+++
T Consensus       104 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~  183 (190)
T 2i13_A          104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT  183 (190)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTT
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCcCcee
Q psy4572         181 HLPIEERLHY  190 (345)
Q Consensus       181 H~~~~~~k~y  190 (345)
                      |+   +++||
T Consensus       184 H~---~~k~~  190 (190)
T 2i13_A          184 HT---GKKTS  190 (190)
T ss_dssp             C---------
T ss_pred             cC---CCCCC
Confidence            98   55665

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=4.1e-27  Score=198.10  Aligned_cols=143  Identities=26%  Similarity=0.493  Sum_probs=116.1

Q ss_pred             ceeccccccccCCHHHHHHHHH---HcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHH
Q psy4572          46 PHKCEHCEKEFENRRALKRHEK---NHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHM  122 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~---~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~  122 (345)
                      +|.|+.|++.|.+...|..|++   .|.++++|.|++|+                       |..|++.|.+...|..|+
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~-----------------------C~~c~~~f~~~~~l~~H~   59 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG-----------------------CSRELRPFKAQYMLVVHM   59 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTT-----------------------CTTTTCCCSSHHHHHHHT
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCC-----------------------ccchhhhhhhHHHHHHHH
Confidence            4666666666666666666666   45555666666552                       556678888888888898


Q ss_pred             HHhcCCCccccCC--CCCCcCCHHHHHHHHHHhcCCCCCCCcc--hhhccCCHHHHHHHH-hhhCCCCcCceeecCc--c
Q psy4572         123 KKHRKEYSAYCEP--CQEGFFSRDKLETHNIAKHGAQPYQCET--CRKLFLSKYSLFTHN-KKHLPIEERLHYQCEL--C  195 (345)
Q Consensus       123 ~~h~~~~~~~C~~--C~k~F~~~~~l~~H~~~hh~~k~y~C~~--Cgk~F~s~s~L~~H~-~~H~~~~~~k~y~C~~--C  195 (345)
                      +.|.++++|.|+.  |++.|.+...|..|++.|+++++|.|+.  |++.|.+...|..|+ +.|.   ++++|.|+.  |
T Consensus        60 ~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~---~~~~~~C~~~~C  136 (155)
T 2gli_A           60 RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS---NEKPYVCKLPGC  136 (155)
T ss_dssp             HHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTC---SCCCEECCSTTT
T ss_pred             HhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcC---CCCCeeCCCCCC
Confidence            8888888899975  9999999999999999998999999998  999999999999998 6776   667899988  9


Q ss_pred             ccccCCHHHHHHHHHHhcC
Q psy4572         196 GKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       196 gk~F~~~~~L~~H~~~~H~  214 (345)
                      ++.|.++..|.+|++.||+
T Consensus       137 ~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          137 TKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CCEESSHHHHHHHHHHSCC
T ss_pred             ccccCCHHHHHHHHHhhcC
Confidence            9999999999999999885

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=5.2e-26  Score=198.22  Aligned_cols=158  Identities=26%  Similarity=0.449  Sum_probs=143.5

Q ss_pred             CCCCCCCccccccccccCCCCCCCceec--cccccccCCHHHHHHHHHHcCCCCceecc--ccccccCCHHHHHHHH-Hh
Q psy4572          22 GAPGGSSGEVKKRSRKSTPQKLDGPHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCT--VCLKMFKTKAQREEHI-AS   96 (345)
Q Consensus        22 ~~~~~s~~~~~~~~~~~~~~~~~~~~~C--~~C~k~F~~~~~L~~H~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~-~~   96 (345)
                      ...+........+..+...+.++++|.|  +.|++.|.....|..|++.|+++++|.|+  .|++.|.+...|..|+ +.
T Consensus        18 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~   97 (190)
T 1tf6_A           18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF   97 (190)
T ss_dssp             TTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTT
T ss_pred             CCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHh
Confidence            3455555555666667667777889999  88999999999999999999999999999  8999999999999999 45


Q ss_pred             c-CCCCCccC--CCCcccccCHHHHHHHHHHhcCCCccccCC--CCCCcCCHHHHHHHHHHhcCCCCCCCcc---hhhcc
Q psy4572          97 H-VTDSEFKC--DQCPYVAKRIKYLRYHMKKHRKEYSAYCEP--CQEGFFSRDKLETHNIAKHGAQPYQCET---CRKLF  168 (345)
Q Consensus        97 h-~~~k~~~C--~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~k~F~~~~~l~~H~~~hh~~k~y~C~~---Cgk~F  168 (345)
                      | .++++|.|  +.|++.|.+...|..|++.|.++++|.|+.  |++.|.+...|..|+++|++   |.|+.   |++.|
T Consensus        98 h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f  174 (190)
T 1tf6_A           98 HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVG  174 (190)
T ss_dssp             SSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCC
T ss_pred             cCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCcc
Confidence            5 36789999  899999999999999999999999999988  99999999999999999987   89999   99999


Q ss_pred             CCHHHHHHHHhhhC
Q psy4572         169 LSKYSLFTHNKKHL  182 (345)
Q Consensus       169 ~s~s~L~~H~~~H~  182 (345)
                      .+...|..|+++|+
T Consensus       175 ~~~~~l~~H~~~h~  188 (190)
T 1tf6_A          175 KTWTLYLKHVAECH  188 (190)
T ss_dssp             SCHHHHHHHHTTCC
T ss_pred             ccHHHHHHHHHhhc
Confidence            99999999999997

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=6.3e-23  Score=165.62  Aligned_cols=114  Identities=24%  Similarity=0.487  Sum_probs=75.8

Q ss_pred             CCCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHH---hcCCCCCCCcchhhccCCHHHHH
Q psy4572          99 TDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIA---KHGAQPYQCETCRKLFLSKYSLF  175 (345)
Q Consensus        99 ~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~---hh~~k~y~C~~Cgk~F~s~s~L~  175 (345)
                      ++++|.|+.|++.|.+...|..|++.|.++++|.|+.|++.|.+...|..|++.   +.++++|.|+.|++.|.+...|.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~   83 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELR   83 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHH
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHH
Confidence            345555555555555555555555555555556666666666666666666554   34566777777777777777777


Q ss_pred             HHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCC
Q psy4572         176 THNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       176 ~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      .|++.|+   ++++|.|++|++.|.++..|.+|++.+|..
T Consensus        84 ~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           84 LHMVSHT---GEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHHS---SSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHHcC---CCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            7777776   556777777777777777777777776654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.89  E-value=7.6e-23  Score=172.16  Aligned_cols=121  Identities=21%  Similarity=0.337  Sum_probs=67.6

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHH-cCCCCc--------eeccccccccCCHHHHHHHHHhcCCCCCccCCC--Cc
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKN-HTQEKT--------FPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ--CP  109 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~-h~~~k~--------~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~--C~  109 (345)
                      ...+.+|.|+.|++.|.+...|..|++. |.++.+        |.|+.|++.|.+...|..|++.|+++++|.|+.  |+
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTC
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCC
Confidence            3445678888888888888888888887 555443        445555555555555555555554444444444  44


Q ss_pred             ccccCHHHHHHHHHHhcCCCccccCC--CCCCcCCHHHHHHHHHHhcCCCCCCC
Q psy4572         110 YVAKRIKYLRYHMKKHRKEYSAYCEP--CQEGFFSRDKLETHNIAKHGAQPYQC  161 (345)
Q Consensus       110 ~~f~~~~~L~~H~~~h~~~~~~~C~~--C~k~F~~~~~l~~H~~~hh~~k~y~C  161 (345)
                      +.|.+...|..|++.|+++++|.|+.  |++.|.....|..|+++|+++++|.|
T Consensus       100 ~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c  153 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS  153 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCS
T ss_pred             CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCC
Confidence            44444444444444444444444443  44444444444444444444444444

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.88  E-value=1.3e-22  Score=162.78  Aligned_cols=111  Identities=26%  Similarity=0.547  Sum_probs=74.5

Q ss_pred             CCCCccCCC--CcccccCHHHHHHHHHHhcCCCccccC--CCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHH
Q psy4572          99 TDSEFKCDQ--CPYVAKRIKYLRYHMKKHRKEYSAYCE--PCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSL  174 (345)
Q Consensus        99 ~~k~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~--~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L  174 (345)
                      ++++|.|+.  |++.|.+...|..|++.|.++++|.|+  .|++.|.+...|..|++.|+++++|.|+.|++.|.+...|
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   82 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHL   82 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHH
Confidence            455666664  666666666666666666666666666  5666666666666666666666677777777777777777


Q ss_pred             HHHHhhhCCCCcCceeec--CccccccCCHHHHHHHHHHh
Q psy4572         175 FTHNKKHLPIEERLHYQC--ELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       175 ~~H~~~H~~~~~~k~y~C--~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      ..|++.|+   ++++|.|  +.|++.|.++..|.+|++.|
T Consensus        83 ~~H~~~h~---~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           83 KTHTRTHT---GEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHH---TCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHhc---CCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            77777665   4556777  66777777777777776643

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=2.9e-22  Score=161.70  Aligned_cols=112  Identities=35%  Similarity=0.619  Sum_probs=62.2

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHH
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMK  123 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~  123 (345)
                      +++|+|+.|++.|.....|..|++.|+++++|.|+.|++.|.+...|..|++.++                         
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~-------------------------   59 (124)
T 2dlq_A            5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC-------------------------   59 (124)
T ss_dssp             CSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCC-------------------------
T ss_pred             CCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhh-------------------------
Confidence            3455666666666666666666665555555555555555555555555555321                         


Q ss_pred             HhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhh
Q psy4572         124 KHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKK  180 (345)
Q Consensus       124 ~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~  180 (345)
                      .+.++++|.|+.|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|++.
T Consensus        60 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~  116 (124)
T 2dlq_A           60 MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK  116 (124)
T ss_dssp             CCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             cCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHH
Confidence            123444555555555555555555555555555555555555555555555555554

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.88  E-value=1.4e-22  Score=162.57  Aligned_cols=111  Identities=27%  Similarity=0.601  Sum_probs=60.4

Q ss_pred             CCCceeccc--cccccCCHHHHHHHHHhcCCCCCccCC--CCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHH
Q psy4572          71 QEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEFKCD--QCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKL  146 (345)
Q Consensus        71 ~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~--~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l  146 (345)
                      ++++|.|++  |++.|.+...|..|++.|.++++|.|+  .|++.|.+...|..|++.|.++++|.|+.|++.|.+...|
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   82 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHL   82 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHH
Confidence            344455544  555555555555555555555555555  4555555555555555555555555555555555555555


Q ss_pred             HHHHHHhcCCCCCCC--cchhhccCCHHHHHHHHhhh
Q psy4572         147 ETHNIAKHGAQPYQC--ETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       147 ~~H~~~hh~~k~y~C--~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      ..|++.|+++++|.|  +.|++.|.+...|..|+++|
T Consensus        83 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            555555555555555  55666666666666665543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=3.2e-22  Score=161.86  Aligned_cols=112  Identities=23%  Similarity=0.465  Sum_probs=53.1

Q ss_pred             Cceecc--ccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCC--CcccccCHHHHHH
Q psy4572          45 GPHKCE--HCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ--CPYVAKRIKYLRY  120 (345)
Q Consensus        45 ~~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~--C~~~f~~~~~L~~  120 (345)
                      ++|.|+  .|++.|.+...|..|++.| ++++|.|+.|++.|.+...|..|++.|+++++|.|+.  |++.|.+...|..
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~   82 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT   82 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHH
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHH
Confidence            345555  4555555555555555554 4445555555555555555555555555544555543  4444444444444


Q ss_pred             HHHHhcCCCccccC--CCCCCcCCHHHHHHHHHHhcCCC
Q psy4572         121 HMKKHRKEYSAYCE--PCQEGFFSRDKLETHNIAKHGAQ  157 (345)
Q Consensus       121 H~~~h~~~~~~~C~--~C~k~F~~~~~l~~H~~~hh~~k  157 (345)
                      |++.|.++++|.|+  .|++.|.+...|..|+++|++++
T Consensus        83 H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k  121 (124)
T 1ubd_C           83 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK  121 (124)
T ss_dssp             HHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC---
T ss_pred             HHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccc
Confidence            44444444444442  24444444444444444444433

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=4.8e-22  Score=167.22  Aligned_cols=120  Identities=23%  Similarity=0.346  Sum_probs=108.1

Q ss_pred             CCCceeccccccccCCHHHHHHHHHh-cCCCCC--------ccCCCCcccccCHHHHHHHHHHhcCCCccccCC--CCCC
Q psy4572          71 QEKTFPCTVCLKMFKTKAQREEHIAS-HVTDSE--------FKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEP--CQEG  139 (345)
Q Consensus        71 ~~k~~~C~~C~k~F~~~~~L~~H~~~-h~~~k~--------~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~k~  139 (345)
                      ++.+|.|+.|++.|.+...|..|++. |.+..+        |.|+.|++.|.+...|..|++.|.++++|.|+.  |++.
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~  101 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI  101 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCE
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCc
Confidence            45779999999999999999999998 655544        789999999999999999999999999999988  9999


Q ss_pred             cCCHHHHHHHHHHhcCCCCCCCcc--hhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         140 FFSRDKLETHNIAKHGAQPYQCET--CRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       140 F~~~~~l~~H~~~hh~~k~y~C~~--Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |.....|..|++.|+++++|.|+.  |++.|.+...|..|+++|+   ++++|.|.
T Consensus       102 f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~---~~k~~~c~  154 (155)
T 2rpc_A          102 FARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT---SDKSGPSS  154 (155)
T ss_dssp             ESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTT---SCCCSCSC
T ss_pred             cCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhc---CCCCCCCC
Confidence            999999999999999999999996  9999999999999999987   67789885

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.86  E-value=5.3e-22  Score=160.60  Aligned_cols=110  Identities=27%  Similarity=0.477  Sum_probs=88.7

Q ss_pred             CCceecc--ccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHhcCCCccccCC--CCCCcCCHHHHH
Q psy4572          72 EKTFPCT--VCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEP--CQEGFFSRDKLE  147 (345)
Q Consensus        72 ~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~--C~k~F~~~~~l~  147 (345)
                      +++|.|+  .|++.|.+...|..|++.| +.++|.|+.|++.|.+...|..|++.|.++++|.|+.  |++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~   81 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR   81 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHH
Confidence            4678888  7888888888888888877 7778888888888888888888888888888888865  888888888888


Q ss_pred             HHHHHhcCCCCCCCc--chhhccCCHHHHHHHHhhhC
Q psy4572         148 THNIAKHGAQPYQCE--TCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       148 ~H~~~hh~~k~y~C~--~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      .|++.|+++++|.|+  .|++.|.+...|..|+++|+
T Consensus        82 ~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~  118 (124)
T 1ubd_C           82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA  118 (124)
T ss_dssp             HHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             HHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHc
Confidence            888888888888885  48888888888888888876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.86  E-value=6.5e-23  Score=169.54  Aligned_cols=110  Identities=18%  Similarity=0.337  Sum_probs=63.8

Q ss_pred             HcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHH
Q psy4572          68 NHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLE  147 (345)
Q Consensus        68 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~  147 (345)
                      .|.|+++|.|++|++.|.....|..|+++|.++++|.|+.|++.|.+...|..|+++|.++++|.|+.|++.|.....|.
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~   95 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMS   95 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHH
T ss_pred             ecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHH
Confidence            44555566666666666666666666655555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCH
Q psy4572         148 THNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNK  202 (345)
Q Consensus       148 ~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~  202 (345)
                      .|++.||+++|+.                         ..++|+|..|++.|...
T Consensus        96 ~H~~~hh~~~p~~-------------------------~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           96 SHIKSVHSQDPSG-------------------------DSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             HHHHHHTCCCTTS-------------------------SSCCEEECCCCSSCCCC
T ss_pred             HHhHHhcCCCCCC-------------------------CCCCeecCCCCchhhhc
Confidence            5555555444322                         23467788888777654

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.86  E-value=8.9e-23  Score=168.71  Aligned_cols=105  Identities=21%  Similarity=0.387  Sum_probs=93.9

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHH
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIK  116 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~  116 (345)
                      +...+.++++|.|++|++.|.....|..|+++|.+++||.|++|++.|.+...|..|+++|.++++|.|+.|++.|.+..
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~   92 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQ   92 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHH
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHH
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCc------cccCCCCCCcC
Q psy4572         117 YLRYHMKKHRKEYS------AYCEPCQEGFF  141 (345)
Q Consensus       117 ~L~~H~~~h~~~~~------~~C~~C~k~F~  141 (345)
                      .|..|++.|++++|      |.|..|++.|.
T Consensus        93 ~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~  123 (133)
T 2lt7_A           93 FMSSHIKSVHSQDPSGDSKLYRLHPCRSLQI  123 (133)
T ss_dssp             HHHHHHHHHTCCCTTSSSCCEEECCCCSSCC
T ss_pred             HHHHHhHHhcCCCCCCCCCCeecCCCCchhh
Confidence            99999999988765      44555554443

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.82  E-value=1e-20  Score=158.83  Aligned_cols=131  Identities=19%  Similarity=0.344  Sum_probs=67.1

Q ss_pred             CCCCCccccccccccC---CCCCCCceeccccc-----cccCCHHHHHHHHHHcCCCCceeccc--cccccCCHHHHHHH
Q psy4572          24 PGGSSGEVKKRSRKST---PQKLDGPHKCEHCE-----KEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEH   93 (345)
Q Consensus        24 ~~~s~~~~~~~~~~~~---~~~~~~~~~C~~C~-----k~F~~~~~L~~H~~~h~~~k~~~C~~--C~k~F~~~~~L~~H   93 (345)
                      .+........+..+..   .+.++++|.|+.|+     +.|.....|..|++.|+++++|.|++  |++.|.+...|..|
T Consensus         9 C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H   88 (155)
T 2gli_A            9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH   88 (155)
T ss_dssp             CCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHH
T ss_pred             CccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHH
Confidence            3333444444555544   56677889998653     45555555555555555555555543  55555555555555


Q ss_pred             HHhcCCCCCccCCC--CcccccCHHHHHHHH-HHhcCCCccccCC--CCCCcCCHHHHHHHHHHhc
Q psy4572          94 IASHVTDSEFKCDQ--CPYVAKRIKYLRYHM-KKHRKEYSAYCEP--CQEGFFSRDKLETHNIAKH  154 (345)
Q Consensus        94 ~~~h~~~k~~~C~~--C~~~f~~~~~L~~H~-~~h~~~~~~~C~~--C~k~F~~~~~l~~H~~~hh  154 (345)
                      ++.|+++++|.|+.  |++.|.+...|..|+ +.|.++++|.|+.  |++.|.+...|..|++.||
T Consensus        89 ~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A           89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             HHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             HHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhc
Confidence            55555545555544  444444444444444 3444444444444  4444444444444444443

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.77  E-value=2e-18  Score=135.59  Aligned_cols=93  Identities=26%  Similarity=0.518  Sum_probs=83.8

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHH
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRY  120 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~  120 (345)
                      ...+++|.|+.|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|+++++|.|+.|++.|.+...|..
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcccc
Q psy4572         121 HMKKHRKEYSAYC  133 (345)
Q Consensus       121 H~~~h~~~~~~~C  133 (345)
                      |++.|.+++++.+
T Consensus        92 H~~~H~~~~~~~~  104 (106)
T 2ee8_A           92 HKTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHTTSCCCCCC
T ss_pred             HHHHhCCCCCCcC
Confidence            9999988887754

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.74  E-value=8.5e-18  Score=131.99  Aligned_cols=89  Identities=26%  Similarity=0.463  Sum_probs=50.8

Q ss_pred             CCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHH
Q psy4572          72 EKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNI  151 (345)
Q Consensus        72 ~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~  151 (345)
                      +++|.|+.|++.|.....|..|++.|+++++|.|+.|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|++
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~   94 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT   94 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHHH
Confidence            34555666666666666666665555555555555555555555555555555555555555555555555555555555


Q ss_pred             HhcCCCCCC
Q psy4572         152 AKHGAQPYQ  160 (345)
Q Consensus       152 ~hh~~k~y~  160 (345)
                      .|+++++|.
T Consensus        95 ~H~~~~~~~  103 (106)
T 2ee8_A           95 LHMQTSSPT  103 (106)
T ss_dssp             HTTSCCCCC
T ss_pred             HhCCCCCCc
Confidence            555555543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=6.1e-18  Score=130.30  Aligned_cols=89  Identities=31%  Similarity=0.661  Sum_probs=68.1

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHH
Q psy4572          42 KLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYH  121 (345)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H  121 (345)
                      .++++|.|+.|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|+++++|.|+.|++.|.+...|..|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   83 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH   83 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH
Confidence            34567788888888888888888887777777788888888888777777887777777777777777777777777777


Q ss_pred             HHHhcCCCc
Q psy4572         122 MKKHRKEYS  130 (345)
Q Consensus       122 ~~~h~~~~~  130 (345)
                      ++.|+++.+
T Consensus        84 ~~~h~~~~~   92 (96)
T 2dmd_A           84 LRSHTGDSG   92 (96)
T ss_dssp             HTTCCSCCC
T ss_pred             HHHhcCCCC
Confidence            777776543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.72  E-value=5.2e-18  Score=126.58  Aligned_cols=82  Identities=26%  Similarity=0.502  Sum_probs=60.6

Q ss_pred             ccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHH
Q psy4572         130 SAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSN  209 (345)
Q Consensus       130 ~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~  209 (345)
                      ||.|+.|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|++.|+   ++++|.|+.|++.|.++..|.+|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~   77 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT---GEKPHKCQVCGKAFSQSSNLITHS   77 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHH---TCCCEECTTTSCEESSHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhc---CCCCCcCCCcchhhCChHHHHHHH
Confidence            46677777777777777777777777777777777777777777777777776   556777777777777777777777


Q ss_pred             HHhcC
Q psy4572         210 MYVLS  214 (345)
Q Consensus       210 ~~~H~  214 (345)
                      +.|++
T Consensus        78 ~~H~g   82 (82)
T 2kmk_A           78 RKHTG   82 (82)
T ss_dssp             HHHC-
T ss_pred             HhhCC
Confidence            77653

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.2e-17  Score=128.59  Aligned_cols=86  Identities=26%  Similarity=0.482  Sum_probs=44.5

Q ss_pred             CCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHH
Q psy4572          71 QEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHN  150 (345)
Q Consensus        71 ~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~  150 (345)
                      ++++|.|++|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|+
T Consensus         5 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   84 (96)
T 2dmd_A            5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL   84 (96)
T ss_dssp             CCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555444444444444444444444444


Q ss_pred             HHhcCC
Q psy4572         151 IAKHGA  156 (345)
Q Consensus       151 ~~hh~~  156 (345)
                      +.|+++
T Consensus        85 ~~h~~~   90 (96)
T 2dmd_A           85 RSHTGD   90 (96)
T ss_dssp             TTCCSC
T ss_pred             HHhcCC
Confidence            444443

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.72  E-value=9.8e-18  Score=127.45  Aligned_cols=85  Identities=29%  Similarity=0.649  Sum_probs=57.9

Q ss_pred             CCceecc--ccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHH
Q psy4572          44 DGPHKCE--HCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYH  121 (345)
Q Consensus        44 ~~~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H  121 (345)
                      +++|.|+  .|++.|.....|..|++.|+++++|.|+.|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   81 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH   81 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH
Confidence            3567776  47777777777777777776666777777777777777777777766666667777777777776667777


Q ss_pred             HHHhcCC
Q psy4572         122 MKKHRKE  128 (345)
Q Consensus       122 ~~~h~~~  128 (345)
                      ++.|+++
T Consensus        82 ~~~H~~~   88 (90)
T 1a1h_A           82 TKIHLRQ   88 (90)
T ss_dssp             HGGGGC-
T ss_pred             HHHhccc
Confidence            6666654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.72  E-value=6.6e-18  Score=128.42  Aligned_cols=84  Identities=25%  Similarity=0.525  Sum_probs=49.8

Q ss_pred             CCccccC--CCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHH
Q psy4572         128 EYSAYCE--PCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF  205 (345)
Q Consensus       128 ~~~~~C~--~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L  205 (345)
                      +++|.|+  .|++.|.....|..|++.|+++++|.|+.|++.|.+...|..|++.|+   ++++|.|+.|++.|.++..|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l   78 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT---GEKPFACDICGRKFARSDER   78 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHH---CCCCEECTTTCCEESSHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcC---CCCCccCCCCCchhCCHHHH
Confidence            3455555  366666666666666666655666666666666666666666666655   44556666666666666666


Q ss_pred             HHHHHHhcC
Q psy4572         206 SLSNMYVLS  214 (345)
Q Consensus       206 ~~H~~~~H~  214 (345)
                      .+|++.|++
T Consensus        79 ~~H~~~H~~   87 (90)
T 1a1h_A           79 KRHTKIHLR   87 (90)
T ss_dssp             HHHHGGGGC
T ss_pred             HHHHHHhcc
Confidence            666665554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.72  E-value=1.1e-17  Score=124.86  Aligned_cols=81  Identities=27%  Similarity=0.557  Sum_probs=56.9

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHh
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKH  125 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h  125 (345)
                      ||.|+.|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|+++++|.|+.|++.|.+...|..|++.|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHHHHhh
Confidence            46677777777777777777777777677777777777777777777777776666677777777777777777776666


Q ss_pred             c
Q psy4572         126 R  126 (345)
Q Consensus       126 ~  126 (345)
                      +
T Consensus        81 ~   81 (82)
T 2kmk_A           81 T   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.6e-17  Score=127.73  Aligned_cols=88  Identities=26%  Similarity=0.428  Sum_probs=63.5

Q ss_pred             CCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHH
Q psy4572         127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS  206 (345)
Q Consensus       127 ~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~  206 (345)
                      ++++|.|+.|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|++.|++. .+++|.|+.|++.|.++..|.
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-~~~~~~C~~C~~~f~~~~~L~   82 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS-VGKPYICQSCGKGFSRPDHLN   82 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCC-CCSSBCCSSSCCCBSSHHHHH
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCC-CCCceECCCccchhCCHHHHH
Confidence            5566777777777777777777777777777777777777777777777777777632 125777877888887777788


Q ss_pred             HHHHHhcCC
Q psy4572         207 LSNMYVLSL  215 (345)
Q Consensus       207 ~H~~~~H~~  215 (345)
                      +|++..|..
T Consensus        83 ~H~~~~H~~   91 (95)
T 2yt9_A           83 GHIKQVHSG   91 (95)
T ss_dssp             HHHHHTSCC
T ss_pred             HHHHHhcCC
Confidence            887765543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.4e-17  Score=131.71  Aligned_cols=86  Identities=26%  Similarity=0.479  Sum_probs=70.0

Q ss_pred             hcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHH
Q psy4572         125 HRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQT  204 (345)
Q Consensus       125 h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~  204 (345)
                      |.++++|.| .|++.|.+...|..|++.|+++++|.|+.|++.|.+...|..|++.|+   ++++|.|++|++.|.++..
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~   80 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT---GIKPYECNICAKRFMWRDS   80 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTC---CCCCEECSSSCCEESCHHH
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcC---CCCCeeCCCCcchhcCHHH
Confidence            566777888 788888888888888888888888888888888888888888888876   5667888888888888888


Q ss_pred             HHHHHHHhcC
Q psy4572         205 FSLSNMYVLS  214 (345)
Q Consensus       205 L~~H~~~~H~  214 (345)
                      |.+|++.||.
T Consensus        81 l~~H~~~~~~   90 (110)
T 2csh_A           81 FHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHccc
Confidence            8888888775

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=7.4e-19  Score=140.30  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=13.1

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHh
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIAS   96 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~   96 (345)
                      |++.|+++++|.|++|++.|.....|..|++.
T Consensus        10 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A           10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNE   41 (115)
T ss_dssp             CCCCCCCCCSEEBSSSSCEESSHHHHHHHHHH
T ss_pred             heeeeCCCCCEECCccCchhcCHHHHHHHHHH
Confidence            33334444444444444444444444444433

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=7.3e-17  Score=123.94  Aligned_cols=85  Identities=32%  Similarity=0.513  Sum_probs=67.8

Q ss_pred             CCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCC--CCccCCCCcccccCHHHHHH
Q psy4572          43 LDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD--SEFKCDQCPYVAKRIKYLRY  120 (345)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~--k~~~C~~C~~~f~~~~~L~~  120 (345)
                      ++++|.|+.|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|+++  ++|.|+.|++.|.+...|..
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~   83 (95)
T 2yt9_A            4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNG   83 (95)
T ss_dssp             CCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHH
T ss_pred             CCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHH
Confidence            4567888888888888888888888888888888888888888888888888888776  77888888888888888888


Q ss_pred             HHH-HhcC
Q psy4572         121 HMK-KHRK  127 (345)
Q Consensus       121 H~~-~h~~  127 (345)
                      |++ .|.+
T Consensus        84 H~~~~H~~   91 (95)
T 2yt9_A           84 HIKQVHSG   91 (95)
T ss_dssp             HHHHTSCC
T ss_pred             HHHHhcCC
Confidence            875 5544

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.6e-17  Score=131.03  Aligned_cols=80  Identities=23%  Similarity=0.422  Sum_probs=33.6

Q ss_pred             cCCCCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHH
Q psy4572          97 HVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFT  176 (345)
Q Consensus        97 h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~  176 (345)
                      |.++++|.|+.|++.|.+...|..|++.|.  ++|.|+.|++.|.....|..|++ |+++++|.|+.|++.|.+...|..
T Consensus        11 h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~--~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~~   87 (107)
T 1wjp_A           11 VENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWR   87 (107)
T ss_dssp             CCCCCCCBCTTTCCBCSSHHHHHHHHHHHH--HSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHCC--CCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHHH
Confidence            333444444444444444444444444431  23444444444444444444442 444444444444444444444444


Q ss_pred             HHh
Q psy4572         177 HNK  179 (345)
Q Consensus       177 H~~  179 (345)
                      |++
T Consensus        88 H~~   90 (107)
T 1wjp_A           88 HQV   90 (107)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=3.8e-17  Score=128.79  Aligned_cols=92  Identities=17%  Similarity=0.273  Sum_probs=72.0

Q ss_pred             CCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHH
Q psy4572          40 PQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLR  119 (345)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~  119 (345)
                      .+.++++|.|+.|++.|.....|..|++.|  .++|.|++|++.|.....|..|+. |.++++|.|+.|++.|.+...|.
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C~~C~~~f~~~~~L~   86 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIW   86 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEEGGGTEECSSHHHHH
T ss_pred             ccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccCccccchhCCHHHHH
Confidence            445567788888888888888888888887  357888888888888888888875 77788888888888888888888


Q ss_pred             HHHH-HhcCCCccccC
Q psy4572         120 YHMK-KHRKEYSAYCE  134 (345)
Q Consensus       120 ~H~~-~h~~~~~~~C~  134 (345)
                      .|++ .|.++++|.|.
T Consensus        87 ~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           87 RHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHTSCCCCCCCCC
T ss_pred             HHHHHHcCCCCCCCCC
Confidence            8876 77777777664

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1e-16  Score=126.70  Aligned_cols=86  Identities=24%  Similarity=0.422  Sum_probs=68.7

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHH
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRY  120 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~  120 (345)
                      +.++++|.| .|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|+++++|.|+.|++.|.+...|..
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~   83 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHR   83 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCHHHHHH
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCHHHHHH
Confidence            455677888 7888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhcC
Q psy4572         121 HMKKHRK  127 (345)
Q Consensus       121 H~~~h~~  127 (345)
                      |++.|++
T Consensus        84 H~~~~~~   90 (110)
T 2csh_A           84 HVTSCTK   90 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHccc
Confidence            8777653

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=5.5e-17  Score=129.34  Aligned_cols=103  Identities=15%  Similarity=0.172  Sum_probs=88.4

Q ss_pred             cccccccCCCCCCCceeccccccccCCHHHHHHHHHH--cCCCCcee-cccccccc--CCHHHHHHHHHhcCCCCCccCC
Q psy4572          32 KKRSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKN--HTQEKTFP-CTVCLKMF--KTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        32 ~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~--h~~~k~~~-C~~C~k~F--~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      ..+..+...+.++++|.|+.|++.|.....|..|++.  |.+++++. |++|++.|  .....|..|++.|.++++|.|+
T Consensus         5 ~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~   84 (115)
T 2dmi_A            5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCM   84 (115)
T ss_dssp             CCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCS
T ss_pred             hhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECC
Confidence            3456667778888999999999999999999999999  77776654 99999988  8888999999999999999999


Q ss_pred             CCcccccCHHHHHHHHHHhcCCCccccC
Q psy4572         107 QCPYVAKRIKYLRYHMKKHRKEYSAYCE  134 (345)
Q Consensus       107 ~C~~~f~~~~~L~~H~~~h~~~~~~~C~  134 (345)
                      .|++.|.+...|..|++.|+......++
T Consensus        85 ~C~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           85 YCGHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             SSCCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             CCCCccCCHHHHHHHHHHhCCcccCCCC
Confidence            9999999999999999888766555444

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.66  E-value=1.4e-17  Score=126.73  Aligned_cols=87  Identities=17%  Similarity=0.266  Sum_probs=76.5

Q ss_pred             CCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHH
Q psy4572         128 EYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSL  207 (345)
Q Consensus       128 ~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~  207 (345)
                      ++||.|+.|++.|.....|..|++.|+++++|.|+.|++.|.+...|..|++.|+   + .+|.|+.|++.|.+...|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~---~-~~~~c~~C~~~f~~~~~L~~   76 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH---I-LPILEDKVEELLSKNYHLEN   76 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHT---H-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhC---C-CcchHHHHHHHHHHHhhhHH
Confidence            4688899999999999999999999999999999999999999999999999987   2 57999999999999999999


Q ss_pred             HHHHhcCCCCc
Q psy4572         208 SNMYVLSLSNM  218 (345)
Q Consensus       208 H~~~~H~~~~~  218 (345)
                      |++.+|+..+.
T Consensus        77 H~~~~h~~~~~   87 (88)
T 1llm_C           77 EVARLKKLVGE   87 (88)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHHhcC
Confidence            99998876543

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.64  E-value=1e-15  Score=118.45  Aligned_cols=85  Identities=31%  Similarity=0.551  Sum_probs=76.7

Q ss_pred             CCCceeccc--cccccCCHHHHHHHHHHcCCCCceecc--ccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHH
Q psy4572          43 LDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCT--VCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYL  118 (345)
Q Consensus        43 ~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L  118 (345)
                      ..++|.|+.  |++.|.....|..|++.|+++++|.|+  .|++.|.....|..|++.|+++++|.|+.|++.|.+...|
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   91 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL   91 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHH
Confidence            346799986  999999999999999999999999996  5999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q psy4572         119 RYHMKKHRK  127 (345)
Q Consensus       119 ~~H~~~h~~  127 (345)
                      ..|++.|.+
T Consensus        92 ~~H~~~H~~  100 (100)
T 2ebt_A           92 ALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCC
Confidence            999988853

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.62  E-value=6.9e-16  Score=119.47  Aligned_cols=83  Identities=25%  Similarity=0.545  Sum_probs=49.4

Q ss_pred             CCccccCC--CCCCcCCHHHHHHHHHHhcCCCCCCCc--chhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHH
Q psy4572         128 EYSAYCEP--CQEGFFSRDKLETHNIAKHGAQPYQCE--TCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQ  203 (345)
Q Consensus       128 ~~~~~C~~--C~k~F~~~~~l~~H~~~hh~~k~y~C~--~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~  203 (345)
                      +++|.|+.  |++.|.....|..|++.|+++++|.|+  .|++.|.+...|..|++.|+   ++++|.|+.|++.|.++.
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~   89 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT---GAKPFQCGVCNRSFSRSD   89 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHT---SCCSCBCSSSCCBCSSHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhC---CCCCeECCCCcCccCCHH
Confidence            34455554  666666666666666666555666664  46666666666666666665   445566666666666666


Q ss_pred             HHHHHHHHhc
Q psy4572         204 TFSLSNMYVL  213 (345)
Q Consensus       204 ~L~~H~~~~H  213 (345)
                      .|.+|++.|.
T Consensus        90 ~l~~H~~~H~   99 (100)
T 2ebt_A           90 HLALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            6666666554

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.61  E-value=8.4e-16  Score=116.38  Aligned_cols=82  Identities=30%  Similarity=0.612  Sum_probs=60.1

Q ss_pred             CCceeccc--cccccCCHHHHHHHHHHcCCCCceecc--ccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHH
Q psy4572          44 DGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCT--VCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLR  119 (345)
Q Consensus        44 ~~~~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~  119 (345)
                      +++|.|+.  |++.|.....|..|++.|+++++|.|+  .|++.|.....|..|++.|+++++|.|+.|++.|.+...|.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   82 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA   82 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHH
Confidence            35677777  777777777777777777777777776  47777777777777777777777777777777777777777


Q ss_pred             HHHHHh
Q psy4572         120 YHMKKH  125 (345)
Q Consensus       120 ~H~~~h  125 (345)
                      .|++.|
T Consensus        83 ~H~~~H   88 (89)
T 2wbs_A           83 LHMKRH   88 (89)
T ss_dssp             HHGGGG
T ss_pred             HHHHhh
Confidence            777665

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=1.3e-16  Score=121.27  Aligned_cols=84  Identities=21%  Similarity=0.341  Sum_probs=65.8

Q ss_pred             CCCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHh
Q psy4572         100 DSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNK  179 (345)
Q Consensus       100 ~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~  179 (345)
                      +++|.|+.|++.|.+...|..|++.|.++++|.|+.|++.|.....|..|++.|++ .+|.|+.|++.|.+...|..|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~f~~~~~L~~H~~   79 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVA   79 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHhhhHHHHH
Confidence            35677777777777777777777777777778888888888888888888777774 67888888888888888888888


Q ss_pred             hhCCC
Q psy4572         180 KHLPI  184 (345)
Q Consensus       180 ~H~~~  184 (345)
                      .+|+.
T Consensus        80 ~~h~~   84 (88)
T 1llm_C           80 RLKKL   84 (88)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77643

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.60  E-value=1.3e-15  Score=115.27  Aligned_cols=79  Identities=24%  Similarity=0.572  Sum_probs=36.4

Q ss_pred             ccccCC--CCCCcCCHHHHHHHHHHhcCCCCCCCc--chhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHH
Q psy4572         130 SAYCEP--CQEGFFSRDKLETHNIAKHGAQPYQCE--TCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTF  205 (345)
Q Consensus       130 ~~~C~~--C~k~F~~~~~l~~H~~~hh~~k~y~C~--~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L  205 (345)
                      +|.|+.  |++.|.....|..|++.|+++++|.|+  .|++.|.+...|..|++.|+   ++++|.|+.|++.|.+...|
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT---GHRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHH---CCCCEECSSSSCEESSHHHH
T ss_pred             CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcC---CCCCccCCCCCcccCCHHHH
Confidence            344444  444444444444444444444444443  24444444444444444443   33344444444444444444


Q ss_pred             HHHHHH
Q psy4572         206 SLSNMY  211 (345)
Q Consensus       206 ~~H~~~  211 (345)
                      ..|++.
T Consensus        82 ~~H~~~   87 (89)
T 2wbs_A           82 ALHMKR   87 (89)
T ss_dssp             HHHGGG
T ss_pred             HHHHHh
Confidence            444443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.57  E-value=2.4e-15  Score=112.54  Aligned_cols=78  Identities=24%  Similarity=0.448  Sum_probs=66.0

Q ss_pred             cccc--CCCCCCcCCHHHHHHHHHHhcCCCCCCCcc--hhhccCCHHHHHHHHhhhCCCCcCceeecCc---cccccCCH
Q psy4572         130 SAYC--EPCQEGFFSRDKLETHNIAKHGAQPYQCET--CRKLFLSKYSLFTHNKKHLPIEERLHYQCEL---CGKSFNNK  202 (345)
Q Consensus       130 ~~~C--~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~--Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~---Cgk~F~~~  202 (345)
                      ||.|  +.|++.|.....|..|++.|+++++|.|+.  |++.|.+...|..|++.|+   +   |.|+.   |++.|.+.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~---~---~~C~~~~~C~~~f~~~   74 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA---G---YPCKKDDSCSFVGKTW   74 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH---S---EECCSCSSCCCEESSH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhC---C---CCCCCCCCCCCccCCH
Confidence            5778  778888888888888888888888888877  8888888888888888886   2   88888   88888888


Q ss_pred             HHHHHHHHHhc
Q psy4572         203 QTFSLSNMYVL  213 (345)
Q Consensus       203 ~~L~~H~~~~H  213 (345)
                      ..|.+|++.||
T Consensus        75 ~~l~~H~~~hh   85 (85)
T 2j7j_A           75 TLYLKHVAECH   85 (85)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            88888888776

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.57  E-value=2.1e-15  Score=106.76  Aligned_cols=58  Identities=24%  Similarity=0.596  Sum_probs=42.6

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCC
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDS  101 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k  101 (345)
                      ++||.|+.||+.|.....|..|+++|++++||.|++|++.|.....|..|+++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            4677777777777777777777777777777777777777777777777777776653

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.54  E-value=7.9e-15  Score=109.70  Aligned_cols=77  Identities=29%  Similarity=0.586  Sum_probs=52.7

Q ss_pred             ceec--cccccccCCHHHHHHHHHHcCCCCceeccc--cccccCCHHHHHHHHHhcCCCCCccCCC---CcccccCHHHH
Q psy4572          46 PHKC--EHCEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEFKCDQ---CPYVAKRIKYL  118 (345)
Q Consensus        46 ~~~C--~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~~---C~~~f~~~~~L  118 (345)
                      ||.|  +.|++.|.....|..|++.|+++++|.|+.  |++.|.+...|..|++.|++   |.|+.   |++.|.+...|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l   77 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLY   77 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHH
Confidence            4667  667777777777777777776666777766  77777777777777766665   66666   66666666666


Q ss_pred             HHHHHHh
Q psy4572         119 RYHMKKH  125 (345)
Q Consensus       119 ~~H~~~h  125 (345)
                      ..|++.|
T Consensus        78 ~~H~~~h   84 (85)
T 2j7j_A           78 LKHVAEC   84 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            6666655

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.53  E-value=6.1e-15  Score=104.41  Aligned_cols=57  Identities=21%  Similarity=0.454  Sum_probs=40.2

Q ss_pred             CCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHhcCC
Q psy4572          72 EKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKE  128 (345)
Q Consensus        72 ~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~  128 (345)
                      |+||.|++|++.|.....|..|+++|.+++||.|+.||+.|.+...|..|+++|.++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            566777777777777777777777777777777777777777777777777766654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.53  E-value=4.9e-15  Score=111.34  Aligned_cols=67  Identities=22%  Similarity=0.462  Sum_probs=26.7

Q ss_pred             CCCceeccccccccCCHHHHHHHHHHcCCC----CceeccccccccCCHHHHHHHHHhcCCCCCccCCCCc
Q psy4572          43 LDGPHKCEHCEKEFENRRALKRHEKNHTQE----KTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCP  109 (345)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~----k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~  109 (345)
                      ++++|.|+.|++.|.....|..|++.|+++    ++|.|+.|++.|.....|..|++.|++++++.|..|+
T Consensus        12 ~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A           12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             CCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            333444444444444444444444333322    2344444444444444444444444444444444333

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=2.2e-14  Score=106.12  Aligned_cols=69  Identities=29%  Similarity=0.621  Sum_probs=49.7

Q ss_pred             CCceeccc--cccccCCHHHHHHHHH-HcCCCCceeccc--cccccCCHHHHHHHHHhcCCCCCccCCCCcccc
Q psy4572          44 DGPHKCEH--CEKEFENRRALKRHEK-NHTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDSEFKCDQCPYVA  112 (345)
Q Consensus        44 ~~~~~C~~--C~k~F~~~~~L~~H~~-~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f  112 (345)
                      +++|.|..  |++.|.....|..|++ .|.++++|.|++  |++.|.....|..|+++|+++++|.|+.|++.|
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            45677765  7777777777777777 577777777776  777777777777777777777777777777766

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.50  E-value=1.7e-15  Score=123.16  Aligned_cols=70  Identities=19%  Similarity=0.206  Sum_probs=54.6

Q ss_pred             CCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCCC
Q psy4572         141 FSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLS  216 (345)
Q Consensus       141 ~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~  216 (345)
                      .....+..|+ .|++++||.|+.||+.|.....|..|+++|     ++||.|+.|++.|.++..|.+|++.||+..
T Consensus        58 ~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H-----~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A           58 DESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT-----EHTKVCPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             TTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT-----CCCCBCTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC-----CCCCCCCCCCcccCCHHHHHHHHHHHCCcc
Confidence            3556666665 577788888888888888888888888887     346888888888888888888888888753

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=4.8e-14  Score=104.32  Aligned_cols=70  Identities=24%  Similarity=0.468  Sum_probs=38.7

Q ss_pred             CCCceeccc--cccccCCHHHHHHHHH-hcCCCCCccCCC--CcccccCHHHHHHHHHHhcCCCccccCCCCCCc
Q psy4572          71 QEKTFPCTV--CLKMFKTKAQREEHIA-SHVTDSEFKCDQ--CPYVAKRIKYLRYHMKKHRKEYSAYCEPCQEGF  140 (345)
Q Consensus        71 ~~k~~~C~~--C~k~F~~~~~L~~H~~-~h~~~k~~~C~~--C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~k~F  140 (345)
                      ++++|.|..  |++.|.+...|..|++ .|.++++|.|+.  |++.|.+...|..|++.|+++++|.|+.|++.|
T Consensus         4 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F   78 (79)
T 2dlk_A            4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS   78 (79)
T ss_dssp             CCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred             CCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence            445555554  5555555555555555 455555555555  555555555555555555555555555555554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=4.6e-14  Score=104.23  Aligned_cols=65  Identities=28%  Similarity=0.510  Sum_probs=59.9

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      ..++++|.|+.|++.|.....|..|++.|+++++|.|++|++.|.....|..|+++|+++++|.|
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            44567899999999999999999999999999999999999999999999999999999999987

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=1.2e-13  Score=103.68  Aligned_cols=79  Identities=20%  Similarity=0.309  Sum_probs=74.1

Q ss_pred             HHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCC----CCccCCCCcccccCHHHHHHHHHHhcCCCccccCCCC
Q psy4572          62 LKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD----SEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYCEPCQ  137 (345)
Q Consensus        62 L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~----k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~C~  137 (345)
                      +.+|+++|+++++|.|++|++.|.....|..|++.|++.    ++|.|+.|++.|.+...|..|++.|+++.++.|..|+
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~~~   82 (86)
T 1x6h_A            3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSG   82 (86)
T ss_dssp             TTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCCCCCC
T ss_pred             cccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCcccCCCC
Confidence            457899999999999999999999999999999987765    7899999999999999999999999999999999999


Q ss_pred             CCc
Q psy4572         138 EGF  140 (345)
Q Consensus       138 k~F  140 (345)
                      ..|
T Consensus        83 ~~~   85 (86)
T 1x6h_A           83 PSS   85 (86)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.43  E-value=3.3e-14  Score=115.50  Aligned_cols=66  Identities=24%  Similarity=0.296  Sum_probs=39.2

Q ss_pred             CHHHHHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         114 RIKYLRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       114 ~~~~L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      ....|..|+ .|+++++|.|+.|++.|.....|..|+++|  ++||.|+.|++.|.+...|..|++.|+
T Consensus        59 ~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           59 ESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             THHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTT
T ss_pred             CHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHC
Confidence            344444444 355556666666666666666666666555  556666666666666666666666665

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=3.3e-14  Score=110.37  Aligned_cols=74  Identities=20%  Similarity=0.216  Sum_probs=56.1

Q ss_pred             cCCHHHHHHHHHHhcCCCCCCCcchhhccC-CHHHHHHHHhhhCCCCc-CceeecCccccccCCHHHHHHHHHHhcCCC
Q psy4572         140 FFSRDKLETHNIAKHGAQPYQCETCRKLFL-SKYSLFTHNKKHLPIEE-RLHYQCELCGKSFNNKQTFSLSNMYVLSLS  216 (345)
Q Consensus       140 F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~-s~s~L~~H~~~H~~~~~-~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~  216 (345)
                      +.....+..|++.|.++++|.|+.|++.|. ....|..|++.|+   + +++|.|++|++.|.++..|.+|++.||+..
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~---~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k   81 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQ---KLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK   81 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHH---HHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSC
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHc---CCCCCEECCCCCCccCCHHHHHHHHHHHcCCC
Confidence            344445567777777788888888888888 8888888888876   4 667888888888888888888888877643

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.42  E-value=2.6e-13  Score=99.31  Aligned_cols=63  Identities=29%  Similarity=0.620  Sum_probs=53.0

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCc
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF  103 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~  103 (345)
                      ..++++|+|+.|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|++++||
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            344577888888888888888888888888888888888888888888888888888888775

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=4.9e-14  Score=109.43  Aligned_cols=70  Identities=16%  Similarity=0.288  Sum_probs=39.1

Q ss_pred             HHHHHHHcCCCCceeccccccccC-CHHHHHHHHHhcCC-CCCccCCCCcccccCHHHHHHHHHHhcCCCcc
Q psy4572          62 LKRHEKNHTQEKTFPCTVCLKMFK-TKAQREEHIASHVT-DSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSA  131 (345)
Q Consensus        62 L~~H~~~h~~~k~~~C~~C~k~F~-~~~~L~~H~~~h~~-~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~  131 (345)
                      +..|++.|.++++|.|++|++.|. ....|..|++.|++ +++|.|+.|++.|.+...|..|++.|+++++.
T Consensus        12 ~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A           12 EEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             CSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             HHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            445555555555555555555555 55555555555555 55555555555555555555555555555443

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.8e-13  Score=101.02  Aligned_cols=64  Identities=20%  Similarity=0.395  Sum_probs=36.0

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHhcCCCcccc
Q psy4572          70 TQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYSAYC  133 (345)
Q Consensus        70 ~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~C  133 (345)
                      .++++|.|++|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|++++||.|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            3445555555555555555555555555555555555555555555555555555555555544

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=3.2e-13  Score=104.67  Aligned_cols=76  Identities=17%  Similarity=0.341  Sum_probs=63.0

Q ss_pred             ccCCHHHHHHHHHHcCCCCceecccccccc-CCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHH-HHHhcCCCcc
Q psy4572          55 EFENRRALKRHEKNHTQEKTFPCTVCLKMF-KTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYH-MKKHRKEYSA  131 (345)
Q Consensus        55 ~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F-~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H-~~~h~~~~~~  131 (345)
                      .|.....+..|++.|.++++|.|+.|++.| .....|..|++.| ++++|.|..|++.|.....|..| ++.|.++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             SSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSC
T ss_pred             CCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCC
Confidence            456667788888888888889999999999 8888999998888 88889999999888888888888 7777654433

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.40  E-value=2e-13  Score=94.47  Aligned_cols=57  Identities=26%  Similarity=0.495  Sum_probs=45.0

Q ss_pred             CCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         155 GAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       155 ~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      |+++|+|+.|++.|.+...|..|++.|+   +++||.|+.|++.|.++..|.+|++.||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHT---GEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHH---CCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcC---CCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            4678888888888888888888888887   66788888888888888888888888874

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=1.4e-13  Score=98.26  Aligned_cols=64  Identities=19%  Similarity=0.480  Sum_probs=52.8

Q ss_pred             HHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCC
Q psy4572         151 IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       151 ~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      ++|.++++|.|+.|++.|.+...|..|++.+|. .++++|.|+.|++.|.++..|.+|++.+|++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~-~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~i   66 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK-RNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI   66 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSS-SSCCCEECTTTCCEESCHHHHHHHHHHHTC-
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcC-CCCcCeECCCCCCccCCHHHHHHHHHHHcCC
Confidence            456788889999999999999999999888431 1567899999999999999999999998874

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.38  E-value=6.9e-13  Score=97.05  Aligned_cols=61  Identities=23%  Similarity=0.498  Sum_probs=35.2

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHhcCCCc
Q psy4572          70 TQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYS  130 (345)
Q Consensus        70 ~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  130 (345)
                      .++++|.|+.|++.|.....|..|++.|.++++|.|+.|++.|.+...|..|++.|.+++|
T Consensus        13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            4455555655655555555555555555555555555555555555555555555555544

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.37  E-value=3.3e-13  Score=102.29  Aligned_cols=62  Identities=18%  Similarity=0.238  Sum_probs=49.1

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCCCC
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSN  217 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~~  217 (345)
                      +.+.++|.|++||+.|.+...|.+|+++|+   +++||.|++|++.|.++..|.+|++..|...+
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~---~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLH---AAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTS---CSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhcc---CCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            345677888888888888888888888887   66788888888888888888888887776543

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=3.3e-13  Score=105.91  Aligned_cols=70  Identities=20%  Similarity=0.392  Sum_probs=52.5

Q ss_pred             CCCCCCceeccccccccCCHHHHHHHHHH-c---CCCCceeccccccccCCHHHHHHH-HHhcCCCCCccCCCCc
Q psy4572          40 PQKLDGPHKCEHCEKEFENRRALKRHEKN-H---TQEKTFPCTVCLKMFKTKAQREEH-IASHVTDSEFKCDQCP  109 (345)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-h---~~~k~~~C~~C~k~F~~~~~L~~H-~~~h~~~k~~~C~~C~  109 (345)
                      ...++++|.|+.|++.|.....|..|++. |   .+++||.|++|++.|.....|..| ++.|.+++||.|..+.
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            34556778888888888888888888763 6   456778888888888888888888 6778788888776643

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=3.2e-13  Score=98.36  Aligned_cols=62  Identities=27%  Similarity=0.482  Sum_probs=48.1

Q ss_pred             HHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCC
Q psy4572         151 IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       151 ~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      ++|.++++|.|+.|++.|.....|..|++.|+   ++++|+|++|++.|.++..|.+|++.|++.
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~---~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHT---GEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGG---CSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcC---CCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            45667778888888888888888888888776   566788888888888888888888877654

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=2.2e-13  Score=100.50  Aligned_cols=70  Identities=17%  Similarity=0.339  Sum_probs=56.2

Q ss_pred             HHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCCCC
Q psy4572         147 ETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSN  217 (345)
Q Consensus       147 ~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~~  217 (345)
                      .+|+++|.++++|.|+.|++.|.+...|..|++.+|.. ++++|.|+.|++.|.++..|.+|++.+|+...
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~-~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTE-NVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS-SCSSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCC-CCCccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            35777888888899999999999999999998744421 23689999999999999999999998887654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=7.5e-13  Score=102.62  Aligned_cols=69  Identities=17%  Similarity=0.149  Sum_probs=34.9

Q ss_pred             ccCHHHHHHHHHHhcCCCccccCCCCCCc-CCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHH-Hhhh
Q psy4572         112 AKRIKYLRYHMKKHRKEYSAYCEPCQEGF-FSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTH-NKKH  181 (345)
Q Consensus       112 f~~~~~L~~H~~~h~~~~~~~C~~C~k~F-~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H-~~~H  181 (345)
                      |.....+..|.+.|.++++|.|+.|++.| .....|..|++.| ++++|.|++|++.|.....|..| +++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           16 YAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             SCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            33444444455545455555555555555 4555555555555 45555555555555555555555 4444

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=8.2e-13  Score=95.55  Aligned_cols=61  Identities=25%  Similarity=0.491  Sum_probs=39.0

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCC
Q psy4572          42 KLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSE  102 (345)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~  102 (345)
                      .++++|.|+.|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|+++++
T Consensus         5 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            3445666666666666666666666666666666666666666666666666666666554

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=1.1e-12  Score=94.96  Aligned_cols=62  Identities=31%  Similarity=0.474  Sum_probs=43.9

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHhcCCCc
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEYS  130 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~~  130 (345)
                      |.++++|.|++|++.|.....|..|++.|.++++|.|+.|++.|.+...|..|++.|+++++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            45666777777777777777777777777777777777777777777777777777766655

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=1.6e-12  Score=94.65  Aligned_cols=61  Identities=28%  Similarity=0.506  Sum_probs=42.7

Q ss_pred             CCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          40 PQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      .+.++++|+|+.|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|+++
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            3455566777777777777777777777777777777777777777777777777766554

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=7.8e-13  Score=103.75  Aligned_cols=68  Identities=24%  Similarity=0.376  Sum_probs=50.6

Q ss_pred             CCCCceeccccccccCCHHHHHHHHH-hc---CCCCCccCCCCcccccCHHHHHHH-HHHhcCCCccccCCCC
Q psy4572          70 TQEKTFPCTVCLKMFKTKAQREEHIA-SH---VTDSEFKCDQCPYVAKRIKYLRYH-MKKHRKEYSAYCEPCQ  137 (345)
Q Consensus        70 ~~~k~~~C~~C~k~F~~~~~L~~H~~-~h---~~~k~~~C~~C~~~f~~~~~L~~H-~~~h~~~~~~~C~~C~  137 (345)
                      .|++||.|+.|++.|.....|..|++ .|   .++++|.|+.|++.|.....|..| ++.|.+++||.|..+.
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            46677888888888888888888876 36   456777777777777777777777 6777777777776644

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=7.1e-13  Score=97.94  Aligned_cols=66  Identities=27%  Similarity=0.454  Sum_probs=51.7

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCCCCc
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSLSNM  218 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~~~  218 (345)
                      |.++++|+|++|++.|.+...|..|++.|++..++++|.|++|++.|.++..|.+|++.+|.....
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            567788888888888888888888888887322367888888888888888888888877765443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.32  E-value=1.4e-12  Score=90.10  Aligned_cols=55  Identities=27%  Similarity=0.496  Sum_probs=36.9

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcC
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHV   98 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~   98 (345)
                      +++|+|+.|++.|.....|..|++.|++++||.|+.|++.|.....|..|++.|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            3566777777777777777777777777777777777777777777777776664

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.32  E-value=6.1e-12  Score=95.26  Aligned_cols=62  Identities=24%  Similarity=0.478  Sum_probs=54.1

Q ss_pred             CCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHH-hcCCC
Q psy4572          39 TPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIA-SHVTD  100 (345)
Q Consensus        39 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~h~~~  100 (345)
                      ......++|.|++|++.|.....|..|+++|++++||.|++|++.|.....|.+|++ .|.++
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            344456789999999999999999999999999999999999999999999999975 46554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.30  E-value=2.6e-12  Score=88.78  Aligned_cols=55  Identities=24%  Similarity=0.380  Sum_probs=40.2

Q ss_pred             CCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcCC
Q psy4572         158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       158 ~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      ||.|+.|++.|.+...|..|++.|+   ++++|.|+.|++.|.+...|.+|++.|++.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT---DVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS---SCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC---CCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            4677777777777777777777776   556777777777777777777777776653

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.30  E-value=3.3e-12  Score=88.20  Aligned_cols=56  Identities=30%  Similarity=0.565  Sum_probs=43.0

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDS  101 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k  101 (345)
                      ||.|+.|++.|.....|..|++.|+++++|.|+.|++.|.....|..|++.|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            46777788877777777778777777777777777777777777777777776654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.27  E-value=3e-12  Score=91.26  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=22.4

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHh-c-CCCCCccCCCCcccccCHHHHHHHHHHh
Q psy4572          70 TQEKTFPCTVCLKMFKTKAQREEHIAS-H-VTDSEFKCDQCPYVAKRIKYLRYHMKKH  125 (345)
Q Consensus        70 ~~~k~~~C~~C~k~F~~~~~L~~H~~~-h-~~~k~~~C~~C~~~f~~~~~L~~H~~~h  125 (345)
                      .+++||.|+.|++.|.....|..|++. | .++++|.|+.|++.|.+...|..|++.|
T Consensus         6 ~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~   63 (66)
T 2drp_A            6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII   63 (66)
T ss_dssp             EETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHH
Confidence            333444444444444444444444433 2 2333444444444444444444443333

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=1.6e-11  Score=93.77  Aligned_cols=62  Identities=21%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             CceeccccccccCCHHHHHHHHHH-cCCCCc--------eeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKN-HTQEKT--------FPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~-h~~~k~--------~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      ..+.|+.|++.|.....|..|++. |.++++        |.|+.|++.|.....|..|+++|+++++|.|+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            346788888888888888888887 777666        66666666666666666666666666666664

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.25  E-value=1.6e-11  Score=90.37  Aligned_cols=64  Identities=20%  Similarity=0.430  Sum_probs=35.7

Q ss_pred             cccCCCCCCCceeccccccccCCHHHHHHHHH-HcCCC-CceeccccccccCCHHHHHHHHHhcCC
Q psy4572          36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEK-NHTQE-KTFPCTVCLKMFKTKAQREEHIASHVT   99 (345)
Q Consensus        36 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~-~h~~~-k~~~C~~C~k~F~~~~~L~~H~~~h~~   99 (345)
                      ++...+.++++|.|+.|++.|.....|..|++ .|.++ ++|.|++|++.|.....|..|++.+++
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            34444555555666666666666666666654 34432 456666666666666666666555443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.25  E-value=4.9e-12  Score=88.38  Aligned_cols=55  Identities=24%  Similarity=0.571  Sum_probs=40.7

Q ss_pred             CCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         157 QPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       157 k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      +||.|+.|++.|.+...|..|++.|+   ++++|.|+.|++.|.++..|.+|++..|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT---NEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT---SSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC---CCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            46777777777777777777777776   55677888888888888888888655443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.20  E-value=1.6e-11  Score=85.65  Aligned_cols=54  Identities=33%  Similarity=0.707  Sum_probs=39.0

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHH-HhcCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHI-ASHVT   99 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~h~~   99 (345)
                      +|.|+.|++.|.....|..|++.|+++++|.|+.|++.|.+...|..|+ +.|.+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            5777777777777777777777777777777777777777777777776 34543

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=2.8e-14  Score=103.63  Aligned_cols=68  Identities=21%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             HHHHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         118 LRYHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       118 L~~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |..|++.|.++++|.|+.|++.|.....|..       +++|.|+.|++.|.+...|..|++.|+   ++++|.|++|
T Consensus         6 l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~---~~~~~~C~~C   73 (73)
T 2ctu_A            6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNES---GKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCC---CCCCSSCCCC
T ss_pred             HHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhc---CCCCCCCCCC
Confidence            4556677777777777777777777666654       788999999999999999999999987   6778999988

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=2.2e-11  Score=89.72  Aligned_cols=51  Identities=25%  Similarity=0.569  Sum_probs=23.7

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCC---CCceeccccccccCCHHHHHHHH
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQ---EKTFPCTVCLKMFKTKAQREEHI   94 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~---~k~~~C~~C~k~F~~~~~L~~H~   94 (345)
                      +++|+|+.|++.|.....|..|++.|++   +++|.|++|++.|.....|..|+
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~   58 (78)
T 2d9h_A            5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR   58 (78)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHH
T ss_pred             CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHH
Confidence            3444444444444444444444444442   34444444444444444444444

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=8.1e-11  Score=85.43  Aligned_cols=57  Identities=30%  Similarity=0.672  Sum_probs=43.1

Q ss_pred             CCCCCceecc--ccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhc
Q psy4572          41 QKLDGPHKCE--HCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH   97 (345)
Q Consensus        41 ~~~~~~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h   97 (345)
                      +.++++|.|+  .|++.|.....|..|++.|+++++|.|++|++.|.....|..|++.|
T Consensus        14 ~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            4455677886  48888888888888877777777788888888888777777777765

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=4.2e-11  Score=86.96  Aligned_cols=54  Identities=22%  Similarity=0.541  Sum_probs=29.8

Q ss_pred             CCCCCCCc--chhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHH
Q psy4572         155 GAQPYQCE--TCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMY  211 (345)
Q Consensus       155 ~~k~y~C~--~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~  211 (345)
                      ++++|.|+  .|++.|.+...|..|++.|+   ++++|.|+.||+.|.++..|.+|++.
T Consensus        16 ~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           16 KMRPYACPVESCDRRFSRSDELTRHIRIHT---GQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCCCEECSSTTBCCEESSHHHHHHHHHHHH---CCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CCCccCCcCCCCCCccCCHHHHHHHHHhhC---CCCCeECCCCCchhCCHHHHHHHHHh
Confidence            44555554  35555555555555555554   34455555555555555555555544

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=1.9e-10  Score=87.69  Aligned_cols=28  Identities=29%  Similarity=0.428  Sum_probs=14.5

Q ss_pred             eeccccccccCCHHHHHHHHHh-cCCCCC
Q psy4572          75 FPCTVCLKMFKTKAQREEHIAS-HVTDSE  102 (345)
Q Consensus        75 ~~C~~C~k~F~~~~~L~~H~~~-h~~~k~  102 (345)
                      +.|+.|++.|.....|..|++. |.++++
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   54 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVTMEHVGGPE   54 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHHHTTTCCTT
T ss_pred             CcccccccccCCHHHHHHHHHHhccCCCC
Confidence            4455555555555555555554 444443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=2.4e-12  Score=93.19  Aligned_cols=68  Identities=21%  Similarity=0.245  Sum_probs=45.3

Q ss_pred             cccccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          34 RSRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        34 ~~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      +..+...+.++++|.|+.|++.|.....|..       +++|.|+.|++.|.....|..|++.|+++++|.|+.|
T Consensus         6 l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4445555666667777777777766666554       5567777777777777777777777767777777665

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=83.45  Aligned_cols=59  Identities=15%  Similarity=0.286  Sum_probs=46.0

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHHcCCCCceecc-ccccccCCHHHHHHHHHhcCCCCC
Q psy4572          42 KLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT-VCLKMFKTKAQREEHIASHVTDSE  102 (345)
Q Consensus        42 ~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~-~C~k~F~~~~~L~~H~~~h~~~k~  102 (345)
                      -+.++|.|+.|++.|. ...|..|+++ ++++||.|+ .|++.|..+..|..|+++|.+..+
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            3456788888888888 8888888887 788888888 888888888888888887765543

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.01  E-value=5.1e-10  Score=80.99  Aligned_cols=57  Identities=32%  Similarity=0.610  Sum_probs=49.9

Q ss_pred             CCCCCceeccc--cccccCCHHHHHHHHHHcCCCCceeccc--cccccCCHHHHHHHHHhc
Q psy4572          41 QKLDGPHKCEH--CEKEFENRRALKRHEKNHTQEKTFPCTV--CLKMFKTKAQREEHIASH   97 (345)
Q Consensus        41 ~~~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h   97 (345)
                      ....++|.|+.  |++.|.....|..|++.|+++++|.|++  |++.|.....|..|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34457899988  9999999999999999999999999965  999999999999998765

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.9e-10  Score=81.13  Aligned_cols=57  Identities=25%  Similarity=0.350  Sum_probs=40.1

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC-CCcccccCHHHHHHHHHHhcCC
Q psy4572          70 TQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD-QCPYVAKRIKYLRYHMKKHRKE  128 (345)
Q Consensus        70 ~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~-~C~~~f~~~~~L~~H~~~h~~~  128 (345)
                      .+++||.|+.|++.|. ...|..|+++ .++++|.|+ .|++.|.....|..|++.|.+.
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhccc
Confidence            3456777777777777 7777777776 677777777 7777777777777777766544

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=1.9e-10  Score=74.98  Aligned_cols=43  Identities=23%  Similarity=0.367  Sum_probs=24.3

Q ss_pred             HHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        66 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      ++.|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445555555555555555555555555555555555555554

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=75.50  Aligned_cols=44  Identities=20%  Similarity=0.235  Sum_probs=25.1

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555554

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2e-10  Score=75.56  Aligned_cols=44  Identities=20%  Similarity=0.210  Sum_probs=23.5

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            34445555555555555555555555555555555555555544

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=75.55  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=25.7

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            44455555556666666666666666666655555555655554

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.1e-10  Score=75.55  Aligned_cols=44  Identities=20%  Similarity=0.320  Sum_probs=26.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            44555556666666666666666666666666666666666555

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.95  E-value=2.4e-10  Score=75.36  Aligned_cols=44  Identities=20%  Similarity=0.290  Sum_probs=22.7

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34444555555555555555555555555555555555555544

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2e-10  Score=75.72  Aligned_cols=44  Identities=25%  Similarity=0.292  Sum_probs=25.7

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555556666666666666666666655555556665554

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3e-10  Score=74.75  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=25.8

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44555555566666666666666666666655655566665554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.1e-10  Score=75.55  Aligned_cols=44  Identities=18%  Similarity=0.310  Sum_probs=24.7

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555554

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.3e-10  Score=75.27  Aligned_cols=44  Identities=20%  Similarity=0.285  Sum_probs=24.8

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555554

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.8e-10  Score=74.88  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44555566666666666666666666666666666666666555

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.5e-10  Score=75.05  Aligned_cols=44  Identities=23%  Similarity=0.295  Sum_probs=22.0

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            33444445555555555555555555555555555555555444

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.2e-10  Score=75.40  Aligned_cols=44  Identities=18%  Similarity=0.222  Sum_probs=24.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555554

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.8e-10  Score=74.91  Aligned_cols=44  Identities=25%  Similarity=0.366  Sum_probs=25.0

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555554

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.94  E-value=2.4e-10  Score=75.21  Aligned_cols=44  Identities=23%  Similarity=0.344  Sum_probs=25.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            44455555555666666666555555555555555555555554

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.3e-10  Score=75.35  Aligned_cols=44  Identities=23%  Similarity=0.284  Sum_probs=23.5

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34445555555555555555555555555555555555555544

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.5e-10  Score=75.19  Aligned_cols=44  Identities=23%  Similarity=0.289  Sum_probs=22.5

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|.+++||.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            34444555555555555555555555555555555555555444

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.7e-10  Score=74.99  Aligned_cols=44  Identities=23%  Similarity=0.361  Sum_probs=22.7

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            34444555555555555555555555555555555555555544

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.8e-10  Score=74.94  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=24.0

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            34445555555555555555555555555555555555555544

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2.4e-10  Score=75.21  Aligned_cols=44  Identities=20%  Similarity=0.238  Sum_probs=25.6

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34455555556666666666666666666555555556665554

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.94  E-value=2.2e-10  Score=75.53  Aligned_cols=44  Identities=23%  Similarity=0.284  Sum_probs=22.2

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |+++|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            33444455555555555555555555555555555555555444

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.7e-10  Score=75.02  Aligned_cols=44  Identities=20%  Similarity=0.306  Sum_probs=24.3

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            34445555555555555555555555555555555555555554

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.94  E-value=2.3e-10  Score=75.27  Aligned_cols=44  Identities=25%  Similarity=0.262  Sum_probs=26.2

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44555555666666666666666666666666666666666554

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.3e-10  Score=75.33  Aligned_cols=44  Identities=23%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34445555555555555555555555555555555555555544

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.4e-10  Score=75.30  Aligned_cols=44  Identities=16%  Similarity=0.268  Sum_probs=23.5

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            33445555555555555555555555555555555555555544

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.5e-10  Score=75.15  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=25.3

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555666666666555555555555555555555554

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.8e-10  Score=74.91  Aligned_cols=44  Identities=18%  Similarity=0.320  Sum_probs=22.5

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            33444555555555555555555555555555555555555444

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.4e-10  Score=75.30  Aligned_cols=44  Identities=18%  Similarity=0.329  Sum_probs=24.8

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555554

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.6e-10  Score=75.18  Aligned_cols=44  Identities=16%  Similarity=0.248  Sum_probs=25.8

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555556666666666666666666655555556665554

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.8e-10  Score=75.76  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.+...|.+|+++|+   +++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS---GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC---SSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcC---CCCCCCCCCC
Confidence            4555666677777777777777777777777665   5566777665

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.1e-10  Score=74.66  Aligned_cols=44  Identities=23%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            55566666666666666666666666666666666666666655

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3.4e-10  Score=74.52  Aligned_cols=44  Identities=27%  Similarity=0.301  Sum_probs=23.1

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|.+++||.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            33445555555555555555555555555555555555555544

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=1.7e-10  Score=75.94  Aligned_cols=44  Identities=23%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.+...|..|+++|+   +++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT---GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS---CCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC---CCCCCCCCCC
Confidence            4555666677777777777777777777777665   5566777665

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.93  E-value=2.3e-10  Score=75.33  Aligned_cols=44  Identities=20%  Similarity=0.247  Sum_probs=23.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            34445555555555555555555555555555555555555544

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.93  E-value=2.7e-10  Score=74.90  Aligned_cols=44  Identities=20%  Similarity=0.236  Sum_probs=26.1

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44555555666666666666666666666666666666666554

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.93  E-value=1.9e-10  Score=75.73  Aligned_cols=44  Identities=18%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |+++|.++++|+|+.|++.|.....|..|++.|+   +++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~---~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV---GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGS---SSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcC---CCCCcCCCCC
Confidence            5556667777777777777777777777777775   5567777766

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.7e-10  Score=74.93  Aligned_cols=44  Identities=23%  Similarity=0.220  Sum_probs=24.0

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44445555555555555555555555555555555555555544

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.8e-10  Score=74.88  Aligned_cols=44  Identities=32%  Similarity=0.300  Sum_probs=25.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555556666666666555555556555555555555554

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.93  E-value=4.2e-10  Score=81.46  Aligned_cols=54  Identities=19%  Similarity=0.449  Sum_probs=39.1

Q ss_pred             CCCCCCCcc--hhhccCCHHHHHHHHhhhCCCCcCceeecCc--cccccCCHHHHHHHHHH
Q psy4572         155 GAQPYQCET--CRKLFLSKYSLFTHNKKHLPIEERLHYQCEL--CGKSFNNKQTFSLSNMY  211 (345)
Q Consensus       155 ~~k~y~C~~--Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~--Cgk~F~~~~~L~~H~~~  211 (345)
                      ..++|.|+.  |++.|.....|..|++.|+   ++++|.|++  |++.|.++..|.+|++.
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHT---GEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHHHS---SSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHhcC---CCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            456677766  7777777777777777776   556777754  77777777777777654

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.5e-10  Score=75.19  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=25.3

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |+++|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            44455555555665566666555555555555555555555554

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3.5e-10  Score=74.46  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=23.2

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            33445555555555555555555555555555555555555544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.8e-10  Score=74.83  Aligned_cols=44  Identities=18%  Similarity=0.170  Sum_probs=26.1

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            44455555666666666666666666666666666666666554

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.5e-10  Score=75.08  Aligned_cols=44  Identities=20%  Similarity=0.303  Sum_probs=22.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34444555555555555555555555555555555555555444

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.1e-10  Score=75.43  Aligned_cols=44  Identities=23%  Similarity=0.390  Sum_probs=30.5

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |+++|.++++|.|+.|++.|.+...|..|++.|+   +++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT---GEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTT---TCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcC---CCCCCCCCCC
Confidence            4556666777777777777777777777777765   5566777766

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.1e-10  Score=74.72  Aligned_cols=44  Identities=20%  Similarity=0.310  Sum_probs=22.9

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |+++|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            33445555555555555555555555555555555555555544

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.1e-10  Score=75.55  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=29.0

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |+++|.++++|.|+.|++.|.+...|.+|++.|+   +++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS---GEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC---CSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC---CCCCCCCCCC
Confidence            4455666666777777777777777777766665   4556777665

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.1e-10  Score=75.61  Aligned_cols=44  Identities=20%  Similarity=0.349  Sum_probs=29.2

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |+++|.++++|.|+.|++.|.+...|..|+++|+   +++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~---~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM---GEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGG---SCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcC---CCCCCCCCCC
Confidence            4455666667777777777777777777777665   5556777665

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.1e-10  Score=75.54  Aligned_cols=44  Identities=20%  Similarity=0.348  Sum_probs=28.0

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |+++|.++++|.|+.|++.|.+...|.+|++.|+   +++||+|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT---GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT---TCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhC---CCCCCCCCCC
Confidence            4455566666666666666666666666666665   4556666665

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.91  E-value=1.7e-10  Score=75.99  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=26.3

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |+++|.++++|.|+.|++.|.+...|.+|+++|+   +++||+|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT---GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS---CCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            3445555666666666666666666666666665   4456666655

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3e-10  Score=74.93  Aligned_cols=42  Identities=21%  Similarity=0.293  Sum_probs=19.8

Q ss_pred             HHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          67 KNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        67 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      ++|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            344444444444444444444444444444444444444443

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.6e-10  Score=76.22  Aligned_cols=44  Identities=23%  Similarity=0.335  Sum_probs=28.3

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.+...|..|+++|+   +++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~---~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT---GEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTS---CSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHHHHHhC---CCCCCCCCCC
Confidence            4455666666666666666666666666666665   4556666665

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.3e-10  Score=75.24  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|+|+.|++.|.+...|..|++.|+   +++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT---GENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT---TSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            4555666677777777777777777777777665   5556777665

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.91  E-value=4.3e-10  Score=74.04  Aligned_cols=43  Identities=16%  Similarity=0.222  Sum_probs=23.0

Q ss_pred             HHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        66 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      ++.|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3445555555555555555555555555555555555555544

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.91  E-value=1.1e-09  Score=74.85  Aligned_cols=46  Identities=28%  Similarity=0.489  Sum_probs=33.6

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHH-HcCCCCceeccccccccCC
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEK-NHTQEKTFPCTVCLKMFKT   86 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~-~h~~~k~~~C~~C~k~F~~   86 (345)
                      +..+++|.|+.|++.|.....|..|++ .|.++++|.|++|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            445567777777777777777777776 6777777777777777764

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=1.9e-10  Score=75.67  Aligned_cols=44  Identities=23%  Similarity=0.409  Sum_probs=29.0

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|+|+.|++.|.+...|.+|++.|+   +++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~---~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT---GVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS---CCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            4455666666777777777777777777766665   4556666665

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=2.3e-10  Score=75.31  Aligned_cols=44  Identities=20%  Similarity=0.306  Sum_probs=23.9

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            34445555555555555555555555555555555555555544

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=3.7e-10  Score=74.39  Aligned_cols=42  Identities=19%  Similarity=0.272  Sum_probs=20.4

Q ss_pred             HHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          67 KNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        67 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      +.|.++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            344444445555555555555455555444444444444444

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.3e-10  Score=74.00  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=25.1

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555565565555555555555555555555555543

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=1.9e-10  Score=75.70  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=27.4

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.+...|..|++.|+   +++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~---~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT---GEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTC---CCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            4455566666666666666666666666666665   4556666665

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.90  E-value=1.8e-10  Score=75.77  Aligned_cols=44  Identities=25%  Similarity=0.401  Sum_probs=28.2

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.+.+.|..|++.|+   +++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT---GVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS---SCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhC---CCCCCCCCCC
Confidence            4455666666666666666666666666666665   4556666665

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=2.1e-10  Score=75.56  Aligned_cols=44  Identities=27%  Similarity=0.498  Sum_probs=26.6

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.+...|.+|+++|+   +++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT---GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGT---TCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhC---CCCCCCCCCC
Confidence            3445556666666666666666666666666665   4456666655

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=2.4e-10  Score=75.24  Aligned_cols=44  Identities=20%  Similarity=0.316  Sum_probs=25.0

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44455555555555555555555555555555555555555554

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.88  E-value=2.3e-10  Score=75.27  Aligned_cols=44  Identities=23%  Similarity=0.380  Sum_probs=27.1

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |+++|.++++|.|+.|++.|.+...|..|++.|+   +++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS---GEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGT---SCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhC---CCCCCCCCCC
Confidence            4455556666666666666666666666666665   4456666655

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.88  E-value=7e-10  Score=73.02  Aligned_cols=42  Identities=24%  Similarity=0.439  Sum_probs=18.2

Q ss_pred             HHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         151 IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       151 ~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      +.|.++++|.|+.|++.|.+.+.|.+|+++|+   +++||.|+.|
T Consensus         5 ~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2emk_A            5 SSGTGEKPYECKECGKAFSQTTHLIQHQRVHT---GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHS---SCCCSSCCCC
T ss_pred             CccCCCCceECCCCCchhCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            33444444444444444444444444444443   3334444443

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=2.7e-10  Score=75.01  Aligned_cols=44  Identities=23%  Similarity=0.428  Sum_probs=29.2

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.+...|..|++.|+   +++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT---GEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS---CCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            4556666666777777777777777777766665   4556766665

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.6e-10  Score=73.63  Aligned_cols=44  Identities=18%  Similarity=0.232  Sum_probs=24.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHH-hcCCCCCccCCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIA-SHVTDSEFKCDQC  108 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~-~h~~~k~~~C~~C  108 (345)
                      |++.|.++++|.|++|++.|.....|..|++ .|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            3444555555555555555555555555555 5555555555554

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.4e-10  Score=72.90  Aligned_cols=43  Identities=21%  Similarity=0.373  Sum_probs=22.9

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ  107 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~  107 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3444555555555555555555555555555555555555544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=2.6e-10  Score=75.00  Aligned_cols=44  Identities=18%  Similarity=0.252  Sum_probs=27.2

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.+...|..|+++|+   +++||+|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM---GEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTC---CSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhC---CCCCCCCCCC
Confidence            4455556666666666666666666666666665   4456666655

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.6e-10  Score=72.69  Aligned_cols=43  Identities=30%  Similarity=0.432  Sum_probs=20.3

Q ss_pred             HHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         150 NIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       150 ~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      ++.|.++++|.|+.|++.|.+...|..|+++|+   ++++|.|++|
T Consensus         4 ~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~~C   46 (46)
T 2eov_A            4 GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT---GERHSGPSSG   46 (46)
T ss_dssp             CCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHS---CCSSCCSCCC
T ss_pred             CCCCCCCCCccCCccChhhCCHHHHHHHHHhcC---CCCCCCCCCC
Confidence            334444444455555555555555555544444   3344444444

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=6.3e-10  Score=72.44  Aligned_cols=27  Identities=41%  Similarity=0.885  Sum_probs=10.7

Q ss_pred             CCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         155 GAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       155 ~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      ++++|.|+.|++.|.+.+.|..|+++|
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (44)
T 2emx_A            7 GEKPFGCSCCEKAFSSKSYLLVHQQTH   33 (44)
T ss_dssp             SCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcCccCCCCCcccCCHHHHHHHHHHh
Confidence            333333333443443333343443333

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=1.9e-09  Score=73.63  Aligned_cols=46  Identities=22%  Similarity=0.366  Sum_probs=32.8

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHH-hcCCCCCccCCCCcccccC
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIA-SHVTDSEFKCDQCPYVAKR  114 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~-~h~~~k~~~C~~C~~~f~~  114 (345)
                      |.++++|.|++|++.|.....|..|++ .|.++++|.|+.|++.|.+
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            456677777777777777777777775 6777777777777777654

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8.1e-10  Score=72.65  Aligned_cols=42  Identities=21%  Similarity=0.385  Sum_probs=18.7

Q ss_pred             HHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         151 IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       151 ~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      +.|.++++|+|+.|++.|.+...|..|+++|+   +++||.|+.|
T Consensus         5 ~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2eoq_A            5 SSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT---AEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTT---CCCSSSCCCC
T ss_pred             CCCCCCCCcCCCcCCchhCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            33444444444444444444444444444443   3334444443

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.7e-10  Score=72.99  Aligned_cols=24  Identities=29%  Similarity=0.726  Sum_probs=8.6

Q ss_pred             CCCCCcchhhccCCHHHHHHHHhh
Q psy4572         157 QPYQCETCRKLFLSKYSLFTHNKK  180 (345)
Q Consensus       157 k~y~C~~Cgk~F~s~s~L~~H~~~  180 (345)
                      ++|.|+.|++.|.+...|.+|+++
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQRI   34 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHHH
Confidence            333333333333333333333333

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.9e-10  Score=72.99  Aligned_cols=27  Identities=44%  Similarity=0.774  Sum_probs=10.1

Q ss_pred             CCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         155 GAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       155 ~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      ++++|.|+.|++.|...+.|..|++.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emp_A            9 GVKPYMCNECGKAFSVYSSLTTHQVIH   35 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCcCeECCCCCchhCCHHHHHHHHHHc
Confidence            333333333333333333333333333

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=3.4e-10  Score=74.52  Aligned_cols=44  Identities=30%  Similarity=0.511  Sum_probs=27.3

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.+...|.+|++.|+   +++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT---GEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT---TSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            4455566666666666666666666666666665   4556666654

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=6.9e-10  Score=72.99  Aligned_cols=27  Identities=41%  Similarity=0.892  Sum_probs=10.1

Q ss_pred             CCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         155 GAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       155 ~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      ++++|.|+.|++.|.+...|..|+++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emh_A            9 GERPYICTVCGKAFTDRSNLIKHQKIH   35 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHhc
Confidence            333333333333333333333333333

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.85  E-value=7.2e-10  Score=72.89  Aligned_cols=42  Identities=24%  Similarity=0.368  Sum_probs=18.1

Q ss_pred             HHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         151 IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       151 ~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      +.|.++++|.|+.|++.|.+...|..|++.|+   +++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~c   46 (46)
T 2ema_A            5 SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT---GEKPSGPSSG   46 (46)
T ss_dssp             SSCTTSCCEECSSSCCEESSHHHHHHHHTGGG---CCCCCSSSCC
T ss_pred             cCCCCCcCcCCCCCcchhCCHHHHHHHHHhcC---CCCCCCCCCC
Confidence            33444444444444444444444444444443   3334444443

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=2e-10  Score=75.63  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=27.6

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.+...|..|+++|+   +++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT---GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGS---SCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            4455566666666666666666666666666665   4556666665

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=4.9e-10  Score=73.92  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=28.1

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHh-hhCCCCcCceeecCcc
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNK-KHLPIEERLHYQCELC  195 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~-~H~~~~~~k~y~C~~C  195 (345)
                      |++.|.++++|.|+.|++.|.....|..|++ .|.   +++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~---~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT---GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT---TSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcC---CCCCCCCCCC
Confidence            4455666666666666666666666666666 665   4556666665

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=7.7e-10  Score=72.81  Aligned_cols=25  Identities=36%  Similarity=0.715  Sum_probs=9.1

Q ss_pred             CCCCCCcchhhccCCHHHHHHHHhh
Q psy4572         156 AQPYQCETCRKLFLSKYSLFTHNKK  180 (345)
Q Consensus       156 ~k~y~C~~Cgk~F~s~s~L~~H~~~  180 (345)
                      +++|.|+.||+.|.+.+.|..|+++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoo_A           10 ERPYGCNECGKNFGRHSHLIEHLKR   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCEEccccCcccCCHHHHHHHHHH
Confidence            3333333333333333333333333

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=9.6e-10  Score=72.41  Aligned_cols=42  Identities=24%  Similarity=0.357  Sum_probs=19.7

Q ss_pred             HHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         151 IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       151 ~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      +.|.++++|.|+.|++.|.+...|.+|++.|+   +++||.|++|
T Consensus         5 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~~C   46 (46)
T 2ytm_A            5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT---GQRPSGPSSG   46 (46)
T ss_dssp             CCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHH---SCCCCCCCCC
T ss_pred             cCCCCCCCcCCCCCCchhCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            33444444444444444444444444444444   3344444444

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=8.7e-10  Score=72.41  Aligned_cols=42  Identities=24%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             HHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         151 IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       151 ~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      ++|.++++|.|+.|++.|.+...|..|++.|+   +++||.|++|
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~~C   46 (46)
T 2eme_A            5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT---GEKPSGPSSG   46 (46)
T ss_dssp             CTTCCCCSEECSSSCCEESSHHHHHHHHGGGC---CCSCCSSCCC
T ss_pred             CCCCCCCCeECCCCChhhCCHHHHHHHHHhcC---CCCCCCCCCC
Confidence            34444444444444444444444444444443   3334444444

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.82  E-value=1.3e-09  Score=70.13  Aligned_cols=40  Identities=25%  Similarity=0.416  Sum_probs=24.7

Q ss_pred             HHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        66 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      ++.|+++++|.|++|++.|.....|..|++.|.++++|.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2el5_A            2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS   41 (42)
T ss_dssp             CSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCC
T ss_pred             CCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCC
Confidence            4455566666666666666666666666666666666665

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.5e-09  Score=69.48  Aligned_cols=44  Identities=23%  Similarity=0.435  Sum_probs=40.6

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|+|+.|++.|.....|..|++.|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            45567778999999999999999999999999999999999988

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=1.1e-09  Score=71.94  Aligned_cols=31  Identities=26%  Similarity=0.563  Sum_probs=13.3

Q ss_pred             HhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         152 AKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       152 ~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      +|.++++|.|+.|++.|.+...|..|+++|+
T Consensus         6 ~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yso_A            6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHM   36 (46)
T ss_dssp             CSSCCCCEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             ccCCCCCEEccccChhhCCHHHHHHHHHHhC
Confidence            3334444444444444444444444444443

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.8e-09  Score=69.31  Aligned_cols=45  Identities=27%  Similarity=0.406  Sum_probs=41.0

Q ss_pred             cccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        36 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      ++...+.++++|.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345567788999999999999999999999999999999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.3e-09  Score=69.66  Aligned_cols=44  Identities=23%  Similarity=0.428  Sum_probs=40.7

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|+|+.|++.|.....|..|++.|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            45567788999999999999999999999999999999999988

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=3.8e-09  Score=69.32  Aligned_cols=44  Identities=27%  Similarity=0.383  Sum_probs=40.6

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            45567778999999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=4e-09  Score=69.22  Aligned_cols=44  Identities=25%  Similarity=0.405  Sum_probs=40.5

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45567778999999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=7.3e-10  Score=72.87  Aligned_cols=29  Identities=34%  Similarity=0.813  Sum_probs=12.2

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      |.++++|.|+.|++.|.+...|..|+++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yu8_A            7 GTGEKPYKCNECGKVFTQNSHLARHRRVH   35 (46)
T ss_dssp             CCCCSSEECSSSCCEESSSHHHHHHTHHH
T ss_pred             CCCCCCeECCcCCchhCCHHHHHHHHHhc
Confidence            33344444444444444444444444444

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=3.3e-09  Score=69.63  Aligned_cols=44  Identities=30%  Similarity=0.459  Sum_probs=40.5

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            45567778999999999999999999999999999999999988

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.5e-09  Score=71.40  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=22.3

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            344455555555555555555555555555555555555554

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=4.4e-09  Score=69.02  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=40.4

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            45566778899999999999999999999999999999999988

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=4e-09  Score=68.93  Aligned_cols=37  Identities=16%  Similarity=0.370  Sum_probs=17.6

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +++|.|+.|++.|.....|..|++.|+++++|.|+.|
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~c   44 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS   44 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCC
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCC
Confidence            3444444444444444444444444444444444444

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=3.4e-09  Score=69.66  Aligned_cols=44  Identities=23%  Similarity=0.425  Sum_probs=40.5

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45567778999999999999999999999999999999999988

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.80  E-value=1.6e-09  Score=71.24  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=22.7

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555555555555555555555555555554

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.3e-09  Score=71.72  Aligned_cols=27  Identities=33%  Similarity=0.750  Sum_probs=10.5

Q ss_pred             CCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         155 GAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       155 ~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      ++++|.|+.|++.|.+...|..|++.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em8_A            9 GEKPYKCVECGKGYKRRLDLDFHQRVH   35 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCeECcccCchhCCHHHHHHHHHHH
Confidence            333333333333333333333333333

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=4.4e-09  Score=69.01  Aligned_cols=44  Identities=25%  Similarity=0.448  Sum_probs=40.5

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            45567778999999999999999999999999999999999988

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.80  E-value=3.2e-09  Score=70.57  Aligned_cols=42  Identities=26%  Similarity=0.430  Sum_probs=29.9

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccccc
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLK   82 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k   82 (345)
                      +..+++|.|+.|++.|.....|..|++.|++++||.|++|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            344566777777777777777777777777777777777764

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.5e-09  Score=71.28  Aligned_cols=40  Identities=25%  Similarity=0.353  Sum_probs=18.0

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |+++++|.|++|++.|.....|..|++.|.++++|.|+.|
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            3444444444444444444444444444444444444443

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.8e-09  Score=69.34  Aligned_cols=39  Identities=21%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             HHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          67 KNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        67 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      ++|.+++||.|++|++.|.....|..|++.|.++++|.|
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             cCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            344555555555555555555555555555555555554

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=4.4e-09  Score=68.96  Aligned_cols=44  Identities=23%  Similarity=0.389  Sum_probs=40.4

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|+++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45567778999999999999999999999999999999999988

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=5.4e-09  Score=68.57  Aligned_cols=44  Identities=25%  Similarity=0.415  Sum_probs=40.3

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            44566778899999999999999999999999999999999988

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.8e-09  Score=70.85  Aligned_cols=42  Identities=24%  Similarity=0.385  Sum_probs=22.5

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            344455555555555555555555555555555555555554

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.6e-09  Score=71.22  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=24.5

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555666666666666666666666555555555554

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.79  E-value=4.5e-09  Score=69.01  Aligned_cols=44  Identities=30%  Similarity=0.437  Sum_probs=40.3

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44566778899999999999999999999999999999999988

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.1e-09  Score=70.62  Aligned_cols=42  Identities=21%  Similarity=0.295  Sum_probs=24.9

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            444555556666666666666666666666666666666554

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2e-09  Score=70.66  Aligned_cols=42  Identities=29%  Similarity=0.460  Sum_probs=21.6

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344445555555555555555555555555555555555553

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2e-09  Score=70.69  Aligned_cols=42  Identities=29%  Similarity=0.407  Sum_probs=23.3

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555555555555555555555555555554

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2e-09  Score=70.73  Aligned_cols=42  Identities=17%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            334455555555555555555555555555555555555553

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.7e-09  Score=71.09  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=22.5

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            344455555555555555555555555555555555555554

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=4.1e-09  Score=70.00  Aligned_cols=42  Identities=19%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcc
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPY  110 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~  110 (345)
                      |.++++|.|++|++.|.....|..|++.|+++++|.|+.|++
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            456677788888888888777888877777777777777764

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.77  E-value=5.6e-09  Score=68.24  Aligned_cols=42  Identities=26%  Similarity=0.365  Sum_probs=40.2

Q ss_pred             HcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCc
Q psy4572          68 NHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCP  109 (345)
Q Consensus        68 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~  109 (345)
                      .|+++++|.|++|++.|.....|..|++.|+++++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            478899999999999999999999999999999999999996

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=4.3e-09  Score=69.05  Aligned_cols=44  Identities=27%  Similarity=0.445  Sum_probs=40.4

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            44567778999999999999999999999999999999999988

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.3e-09  Score=69.52  Aligned_cols=41  Identities=29%  Similarity=0.438  Sum_probs=23.2

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      |++.|.++++|.|+.|++.|.....|..|++.|.++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            44455555555555555555555555555555555555555

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2e-09  Score=70.68  Aligned_cols=42  Identities=26%  Similarity=0.356  Sum_probs=22.8

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            444455555555555555555555555555555555555554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=1.9e-09  Score=70.82  Aligned_cols=42  Identities=24%  Similarity=0.303  Sum_probs=22.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            344455555555555555555555555555555555555554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.2e-09  Score=70.55  Aligned_cols=42  Identities=26%  Similarity=0.427  Sum_probs=23.6

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555555555555555555555555554

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.1e-09  Score=70.58  Aligned_cols=42  Identities=24%  Similarity=0.318  Sum_probs=24.7

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |+++|.++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            444555555666666666666666666666556555565554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.1e-09  Score=70.64  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=23.2

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344455555555555555555555555555555555555554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.2e-09  Score=70.45  Aligned_cols=42  Identities=26%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            344445555555555555555555555555555555555553

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.9e-09  Score=70.85  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=22.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            344455555555555555555555555555555555555554

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.5e-09  Score=70.26  Aligned_cols=41  Identities=20%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             HHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        66 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      ++.|.++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            33444444444544544444444444444444444444443

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.3e-09  Score=70.48  Aligned_cols=29  Identities=31%  Similarity=0.733  Sum_probs=11.9

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      |.++++|.|+.|++.|.+...|..|++.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em2_A            7 GSGEKPFKCKECGKAFRQNIHLASHLRIH   35 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCCCEECCcCCchhCCHHHHHHHHHHh
Confidence            33334444444444444444444444443

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.76  E-value=1.6e-09  Score=74.03  Aligned_cols=50  Identities=10%  Similarity=0.234  Sum_probs=37.1

Q ss_pred             cccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCc
Q psy4572          54 KEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEF  103 (345)
Q Consensus        54 k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~  103 (345)
                      +.|.....|..|++.|.++++|.|+.|++.|.....|..|+++|+++++|
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            45666666777777777777777777777777777777777777777665

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2e-09  Score=70.74  Aligned_cols=42  Identities=19%  Similarity=0.306  Sum_probs=21.9

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            344455555555555555555555555555555555555553

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.9e-09  Score=70.09  Aligned_cols=41  Identities=27%  Similarity=0.380  Sum_probs=24.0

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      |+++|.++++|.|++|++.|.....|..|++.|.++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCC
Confidence            44455555556666666666666666666555555555555

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.3e-09  Score=70.43  Aligned_cols=42  Identities=26%  Similarity=0.353  Sum_probs=23.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|++++||.|++|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            444555555555555555555555555555555555555553

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.4e-09  Score=70.41  Aligned_cols=42  Identities=21%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            444555555555555555555555555555555555555554

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.1e-09  Score=70.57  Aligned_cols=42  Identities=21%  Similarity=0.355  Sum_probs=22.9

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|+++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            444455555555555555555555555555555555555554

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.4e-09  Score=70.28  Aligned_cols=42  Identities=26%  Similarity=0.351  Sum_probs=24.5

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            444555555566666666666666666666555555555554

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2e-09  Score=70.85  Aligned_cols=41  Identities=24%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             HHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        66 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      ++.|.++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            34455555555555555555555555555555555555554

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.2e-09  Score=69.69  Aligned_cols=41  Identities=24%  Similarity=0.345  Sum_probs=21.4

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            34445555555555555555555555555555555555554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.8e-09  Score=70.91  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=26.6

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |++.|.++++|.|+.|++.|.+...|..|++.|+   +++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT---GERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTS---CCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhC---CCCCCCCC
Confidence            4455566666666666666666666666666665   45566665

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=1.8e-09  Score=70.95  Aligned_cols=42  Identities=24%  Similarity=0.460  Sum_probs=26.9

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |+++|.++++|.|+.|++.|.....|.+|+++|+   +++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~---~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT---GEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTT---TSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhC---CCCCCCCC
Confidence            4455666666666666666666666666666665   45566665

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.2e-09  Score=70.61  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=15.4

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCC
Q psy4572          70 TQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ  107 (345)
Q Consensus        70 ~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~  107 (345)
                      .++++|.|++|++.|.....|..|++.|+++++|.|+.
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytt_A            8 EGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS   45 (46)
T ss_dssp             SCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCC
T ss_pred             CCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            33334444444444444444444444444444444433

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.1e-09  Score=70.61  Aligned_cols=42  Identities=26%  Similarity=0.457  Sum_probs=27.4

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |++.|.++++|.|+.|++.|.+...|..|+++|+   +++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT---GEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGC---CCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcC---CCCCCCCC
Confidence            4455666666677777777777777777766665   45566665

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.2e-09  Score=70.46  Aligned_cols=42  Identities=26%  Similarity=0.505  Sum_probs=26.3

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |++.|.++++|.|+.|++.|.+...|..|+++|+   +++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT---GENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGS---SSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhC---CCCCCCCC
Confidence            4455566666666666666666666666666665   45566665

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=2.9e-09  Score=69.20  Aligned_cols=41  Identities=20%  Similarity=0.375  Sum_probs=24.2

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      |++.|.+++||.|++|++.|.....|..|++.|.++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            44455555666666666666666666666666655555555

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=3.1e-09  Score=69.06  Aligned_cols=41  Identities=17%  Similarity=0.355  Sum_probs=25.7

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      |++.|.++++|.|+.|++.|.....|..|++.|.++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSS   43 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCC
Confidence            44556666666666666666666666666666666666665

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2e-09  Score=70.74  Aligned_cols=42  Identities=24%  Similarity=0.441  Sum_probs=25.9

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |++.|.++++|.|+.|++.|.+...|..|+++|+   +++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~---~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT---GEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTS---CSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcC---CCCCCCCC
Confidence            4445556666666666666666666666666665   44566664

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.3e-09  Score=70.49  Aligned_cols=42  Identities=24%  Similarity=0.370  Sum_probs=26.8

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |++.|.++++|.|+.|++.|.+...|..|+++|+   +++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT---GEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS---SSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcC---CCCCCCCC
Confidence            4455566666666666666666666666666665   45566665

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.72  E-value=3.7e-09  Score=67.80  Aligned_cols=39  Identities=18%  Similarity=0.236  Sum_probs=20.1

Q ss_pred             HHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          67 KNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        67 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      +.|.++++|.|++|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            4 GSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             SCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             ccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            344455555555555555555555555555555555544

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.3e-09  Score=70.43  Aligned_cols=42  Identities=26%  Similarity=0.445  Sum_probs=25.9

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |++.|.++++|.|+.|++.|.+...|..|++.|+   +++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT---GEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTC---CSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhC---CCCCCCCC
Confidence            4455556666666666666666666666666665   44566664

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.1e-09  Score=70.78  Aligned_cols=42  Identities=24%  Similarity=0.435  Sum_probs=26.2

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |++.|.++++|.|+.|++.|.+...|.+|+++|+   +++||.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS---GERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT---SCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC---CCCCCCCC
Confidence            3445556666666666666666666666666665   45566665

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=9e-09  Score=67.49  Aligned_cols=42  Identities=29%  Similarity=0.440  Sum_probs=38.8

Q ss_pred             CCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          39 TPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        39 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      ..+.++++|.|+.|++.|.....|..|++.|++++||.|++|
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            455677899999999999999999999999999999999988

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=3.1e-09  Score=69.68  Aligned_cols=42  Identities=24%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|.++++|.|+.|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555555555555555555555555554

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=2.6e-09  Score=69.33  Aligned_cols=42  Identities=29%  Similarity=0.489  Sum_probs=25.6

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |++.|.++++|.|+.|++.|.+...|..|++.|+   +++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT---GESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTC---CSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcC---CCCCCCCC
Confidence            4455556666666666666666666666666665   44566653

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.71  E-value=6.5e-10  Score=78.51  Aligned_cols=46  Identities=22%  Similarity=0.517  Sum_probs=21.1

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCccccc
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAK  113 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~  113 (345)
                      |++.|.+++||.|+.|++.|.....|.   +.|.++++|.|+.|++.|.
T Consensus         5 h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~   50 (62)
T 1vd4_A            5 DERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVE   50 (62)
T ss_dssp             CSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCE
T ss_pred             HHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccc
Confidence            344444444444444444444444333   3444444444444444443

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=5.8e-09  Score=66.88  Aligned_cols=30  Identities=33%  Similarity=0.789  Sum_probs=13.7

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      |.++++|.|+.|++.|.+.+.|.+|+++|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKMHT   34 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHhC
Confidence            344444444444444444444444444443

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=3.2e-09  Score=69.77  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=23.6

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCC-CCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVT-DSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~-~k~~~C~  106 (345)
                      |++.|.+++||.|++|++.|.....|..|++.|.+ +++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            34455555555555555555555555555555555 5555554

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=2.7e-09  Score=68.59  Aligned_cols=40  Identities=20%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             HHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        66 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      +++|.+++||.|+.|++.|.....|..|++.|.++++|.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            3344455555555555555555555555555555555544

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=3e-09  Score=68.37  Aligned_cols=40  Identities=20%  Similarity=0.423  Sum_probs=22.2

Q ss_pred             HHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        66 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      ++.|.+++||.|++|++.|.....|..|++.|.++++|.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            3445555555555555555555555555555555555554

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3.3e-09  Score=69.69  Aligned_cols=40  Identities=28%  Similarity=0.425  Sum_probs=20.6

Q ss_pred             HHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          67 KNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        67 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      +.|.++++|.|++|++.|.....|..|++.|.++++|.|+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3444555555555555555555555555555555555543

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=3e-09  Score=69.92  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             HHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        66 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      ++.|.++++|.|++|++.|.....|..|++.|.++++|.|
T Consensus         4 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2emz_A            4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP   43 (46)
T ss_dssp             CSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCS
T ss_pred             CcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            3344444444444444444444444444444444444444

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=2.2e-09  Score=69.69  Aligned_cols=42  Identities=29%  Similarity=0.515  Sum_probs=26.7

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |+++|.++++|.|+.|++.|.+...|..|++.|+   ++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS---GQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSS---SSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcC---CCCCCCCC
Confidence            4455666666666666666666666666666665   45566663

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=2.3e-09  Score=68.84  Aligned_cols=41  Identities=24%  Similarity=0.338  Sum_probs=21.8

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      |++.|.++++|.|++|++.|.....|..|++.|.++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            33445555555555555555555555555555555555544

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.69  E-value=5e-09  Score=67.28  Aligned_cols=30  Identities=37%  Similarity=0.817  Sum_probs=12.9

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      |.++++|+|+.|++.|.+...|..|+++|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (42)
T 2el5_A            5 SSGENPYECSECGKAFNRKDQLISHQRTHA   34 (42)
T ss_dssp             SSSCCSEECSSSCCEESSHHHHHHHHGGGC
T ss_pred             CCCCCCccCCCcChhhCCHHHHHHHHHhcC
Confidence            334444444444444444444444444443

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=5.1e-09  Score=68.06  Aligned_cols=38  Identities=26%  Similarity=0.356  Sum_probs=17.0

Q ss_pred             HcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          68 NHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        68 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      .|.++++|.|++|++.|.....|..|++.|.++++|.|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (44)
T 2eou_A            6 SGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSS   43 (44)
T ss_dssp             SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCC
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCC
Confidence            34444444444444444444444444444444444444

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=8.6e-09  Score=67.64  Aligned_cols=40  Identities=30%  Similarity=0.470  Sum_probs=18.4

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCcc
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELC  195 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~C  195 (345)
                      |.++++|.|+.|++.|.+...|..|++.|+   +++||.|++|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSECGKSFSGSYRLTQHWITHT---REKPSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTHHH---HCCCCSCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHHcC---CCCCCCCCCC
Confidence            334444444444444444444444444443   3344444444

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=6.8e-09  Score=68.03  Aligned_cols=36  Identities=25%  Similarity=0.486  Sum_probs=13.6

Q ss_pred             cCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCC
Q psy4572         126 RKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQC  161 (345)
Q Consensus       126 ~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C  161 (345)
                      .++++|.|+.|++.|.....|..|++.|++++||.|
T Consensus         8 ~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C   43 (46)
T 2eor_A            8 TGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP   43 (46)
T ss_dssp             SCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSS
T ss_pred             CCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCC
Confidence            333333333333333333333333333333333333

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=3e-09  Score=69.84  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=23.5

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |++.|++++||.|++|++.|.....|..|++.|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            444555555555555555555555555555555555555553

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=9.7e-09  Score=67.38  Aligned_cols=29  Identities=31%  Similarity=0.689  Sum_probs=12.0

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      |.++++|.|+.|++.|.+...|..|++.|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2en9_A            7 GAGKKLFKCNECKKTFTQSSSLTVHQRIH   35 (46)
T ss_dssp             CCSSCCCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHHc
Confidence            33344444444444444444444444444

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=3e-09  Score=68.29  Aligned_cols=41  Identities=29%  Similarity=0.472  Sum_probs=26.2

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeec
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQC  192 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C  192 (345)
                      |+++|.++++|.|+.|++.|.....|..|+++|+   +++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT---GSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTS---CCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhC---CCCCCCC
Confidence            4455666666666666666666666666666665   4556655

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=8.2e-09  Score=67.74  Aligned_cols=29  Identities=38%  Similarity=0.834  Sum_probs=12.3

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      |.++++|.|+.|++.|.....|.+|+++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoh_A            7 GSGKKPYECKECRKTFIQIGHLNQHKRVH   35 (46)
T ss_dssp             CCCSCSCCCSSSCCCCSSHHHHHHHHHHC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHHh
Confidence            33444444444444444444444444444

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=4e-09  Score=69.30  Aligned_cols=42  Identities=29%  Similarity=0.517  Sum_probs=27.5

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |++.|.++++|.|+.|++.|.+...|..|++.|+   +++||.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~---~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS---GEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC---CSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC---CCCCCCCC
Confidence            3445666667777777777777777777777665   45566665

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=7.2e-09  Score=67.96  Aligned_cols=29  Identities=34%  Similarity=0.757  Sum_probs=11.8

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      |.++++|.|+.|++.|.+...|..|++.|
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emi_A            7 GTGERHYECSECGKAFIQKSTLSMHQRIH   35 (46)
T ss_dssp             CSSCCCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             cCCCCCCCCCCCCcccCCHHHHHHHHhHh
Confidence            33334444444444444444444444443

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=7.7e-09  Score=67.87  Aligned_cols=32  Identities=34%  Similarity=0.733  Sum_probs=15.0

Q ss_pred             HHhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         151 IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       151 ~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      +.|.++++|.|+.|++.|.+...|..|+++|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yth_A            5 SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT   36 (46)
T ss_dssp             SCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGT
T ss_pred             cCCCCCcCCCCCCCCcccCCHHHHHHHHHhcC
Confidence            33444444444444444444444444444443

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=8.6e-09  Score=67.03  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=23.8

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|+++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            44455555566666666666666666666655555555554

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=3.7e-09  Score=69.30  Aligned_cols=42  Identities=29%  Similarity=0.487  Sum_probs=27.5

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCE  193 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~  193 (345)
                      |++.|.++++|.|+.|++.|.....|..|++.|+   +++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~---~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT---GKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSC---CCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhC---CCCCCCCC
Confidence            4455666666777777777777777777766665   45566665

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=2.8e-08  Score=65.09  Aligned_cols=43  Identities=28%  Similarity=0.495  Sum_probs=39.1

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV   79 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~   79 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556777899999999999999999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.64  E-value=2.5e-08  Score=65.40  Aligned_cols=43  Identities=26%  Similarity=0.432  Sum_probs=39.1

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV   79 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~   79 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556777899999999999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2.7e-08  Score=65.17  Aligned_cols=43  Identities=26%  Similarity=0.436  Sum_probs=39.1

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV   79 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~   79 (345)
                      +...+.++++|+|+.|++.|.....|..|++.|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4556777899999999999999999999999999999999974

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=4.1e-09  Score=68.49  Aligned_cols=41  Identities=22%  Similarity=0.315  Sum_probs=22.0

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      |++.|+++++|.|++|++.|.....|..|++.|.++++|.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCC
Confidence            34445555555555555555555555555555555555554

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=2.8e-08  Score=64.97  Aligned_cols=43  Identities=28%  Similarity=0.482  Sum_probs=39.0

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV   79 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~   79 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            4556777899999999999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=7e-09  Score=67.94  Aligned_cols=32  Identities=34%  Similarity=0.696  Sum_probs=14.5

Q ss_pred             HHhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         151 IAKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       151 ~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      ++|.++++|.|+.|++.|.....|..|+++|+
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yts_A            5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHT   36 (46)
T ss_dssp             CCCCSCCSEECSSSCCEESSHHHHHHHGGGTS
T ss_pred             CCCCCCcCEECCCCChhhCChHHHHHHHHhcC
Confidence            33444444444444444444444444444443

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=9.7e-09  Score=67.84  Aligned_cols=40  Identities=28%  Similarity=0.262  Sum_probs=18.4

Q ss_pred             cCCCCceecc--ccccccCCHHHHHHHHHhcCCCCCccCCCC
Q psy4572          69 HTQEKTFPCT--VCLKMFKTKAQREEHIASHVTDSEFKCDQC  108 (345)
Q Consensus        69 h~~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C  108 (345)
                      |.++++|.|.  .|++.|.....|..|++.|.++++|.|+.|
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4444444444  444444444444444444444444444443

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=9.4e-09  Score=67.46  Aligned_cols=37  Identities=19%  Similarity=0.324  Sum_probs=14.4

Q ss_pred             hcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCC
Q psy4572         125 HRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQC  161 (345)
Q Consensus       125 h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C  161 (345)
                      |.++++|.|+.|++.|.....|..|++.|+++++|.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2yto_A            7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP   43 (46)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTT
T ss_pred             cCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCC
Confidence            3333333333333333333333333333333333333

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=3e-08  Score=64.85  Aligned_cols=43  Identities=26%  Similarity=0.502  Sum_probs=38.9

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV   79 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~   79 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4456677899999999999999999999999999999999974

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.61  E-value=2.2e-08  Score=64.75  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=14.2

Q ss_pred             CCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          71 QEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        71 ~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      ++++|.|+.|++.|.....|..|++.|+++++|.|
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (43)
T 2yrm_A            7 GNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPS   41 (43)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSS
T ss_pred             CCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccC
Confidence            33344444444444444444444444444444433

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=9.4e-09  Score=67.12  Aligned_cols=36  Identities=36%  Similarity=0.682  Sum_probs=17.2

Q ss_pred             CCCceeccccccccCCHHHHHHHHHHcCCCCceecc
Q psy4572          43 LDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT   78 (345)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~   78 (345)
                      ++++|+|+.|++.|.....|..|++.|+++++|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            9 GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            334444444444444444444444444444444443

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.61  E-value=7.5e-09  Score=70.59  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=19.3

Q ss_pred             cCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         140 FFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       140 F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      |.....+..|++.|.++++|.|+.||+.|...+.|..|+++|+
T Consensus         6 ~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A            6 AKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhc
Confidence            3333344444444444444444444444444444444444443

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.7e-08  Score=65.18  Aligned_cols=43  Identities=23%  Similarity=0.376  Sum_probs=38.9

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV   79 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~   79 (345)
                      +...+.++++|+|+.|++.|.....|..|++.|++++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4556777899999999999999999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.9e-08  Score=66.06  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=15.5

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      |+++++|.|++|++.|.....|..|++.|+++++|.|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C   43 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP   43 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCC
Confidence            3334444444444444444444444444444444444

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.2e-08  Score=66.99  Aligned_cols=29  Identities=31%  Similarity=0.642  Sum_probs=12.3

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      |.++++|+|+.|++.|.....|..|+++|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emz_A            7 GSGERPFKCNECGKGFGRRSHLAGHLRLH   35 (46)
T ss_dssp             SSCCCSCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHh
Confidence            33444444444444444444444444444

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=4.5e-08  Score=63.28  Aligned_cols=42  Identities=24%  Similarity=0.495  Sum_probs=38.2

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT   78 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~   78 (345)
                      +...+.++++|.|+.|++.|.....|..|+++|++++||.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            455677789999999999999999999999999999999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=4e-08  Score=64.36  Aligned_cols=44  Identities=25%  Similarity=0.345  Sum_probs=39.4

Q ss_pred             cccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccc
Q psy4572          36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV   79 (345)
Q Consensus        36 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~   79 (345)
                      ++...+.++++|.|+.|++.|.....|..|++.|+++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34556778899999999999999999999999999999999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=1.9e-08  Score=65.25  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=14.0

Q ss_pred             HhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         152 AKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       152 ~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      .|.++++|.|+.|++.|.....|..|+++|+
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eou_A            6 SGAAKTTSECQECGKIFRHSSLLIEHQALHA   36 (44)
T ss_dssp             SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHT
T ss_pred             CCCCCcCeECCCCCcccCCHHHHHHHHHHHC
Confidence            3344444444444444444444444444443

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.1e-08  Score=65.60  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=13.6

Q ss_pred             cCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCC
Q psy4572         126 RKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQ  160 (345)
Q Consensus       126 ~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~  160 (345)
                      .++++|.|+.|++.|.....|..|++.|.+++||.
T Consensus         7 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2en2_A            7 GGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS   41 (42)
T ss_dssp             CSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSC
T ss_pred             CCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCC
Confidence            33333333333333333333333333333333333

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.2e-08  Score=66.16  Aligned_cols=29  Identities=31%  Similarity=0.686  Sum_probs=11.7

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      |.++++|.|+.|++.|.....|..|++.|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2emb_A            7 GHTRKRYECSKCQATFNLRKHLIQHQKTH   35 (44)
T ss_dssp             CCCCSSEECTTTCCEESCHHHHHHHGGGG
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            33333444444444444444444444433

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.58  E-value=1.5e-08  Score=64.87  Aligned_cols=26  Identities=35%  Similarity=0.677  Sum_probs=9.6

Q ss_pred             CCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         156 AQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       156 ~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      +++|.|+.|++.|.+...|..|++.|
T Consensus         9 ~~~~~C~~C~k~f~~~~~l~~H~~~H   34 (42)
T 2epc_A            9 ETPYLCGQCGKSFTQRGSLAVHQRSC   34 (42)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCCeECCCCCcccCCHHHHHHHhhhc
Confidence            33333333333333333333333333

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.2e-08  Score=65.46  Aligned_cols=31  Identities=32%  Similarity=0.633  Sum_probs=14.1

Q ss_pred             HhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         152 AKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       152 ~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      .|.++++|+|+.|++.|.+.+.|..|++.|+
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2eos_A            5 SSGGEKPYPCEICGTRFRHLQTLKSHLRIHT   35 (42)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS
T ss_pred             ccCCCCCEECCCCCCccCCHHHHHHHHHhcC
Confidence            3344444444444444444444444444443

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3.8e-08  Score=64.35  Aligned_cols=43  Identities=26%  Similarity=0.481  Sum_probs=38.9

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV   79 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~   79 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4556777899999999999999999999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=2.7e-08  Score=63.41  Aligned_cols=37  Identities=19%  Similarity=0.342  Sum_probs=18.2

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      |+++++|.|++|++.|.....|..|++.|+++++|.|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            3444445555555555555555555444444444444

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=1.1e-08  Score=66.98  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=12.8

Q ss_pred             CCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCC
Q psy4572         127 KEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQC  161 (345)
Q Consensus       127 ~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C  161 (345)
                      ++++|.|+.|++.|.....|..|++.|+++++|.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C   43 (46)
T 2en3_A            9 GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP   43 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSC
T ss_pred             CCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCC
Confidence            33333333333333333333333333333333333

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.55  E-value=3.5e-08  Score=69.41  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=45.1

Q ss_pred             ccccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHH
Q psy4572          35 SRKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQ   89 (345)
Q Consensus        35 ~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~   89 (345)
                      ..+...+.++++|.|+.|++.|.....|.   +.|.+++||.|+.|++.|....+
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            45566778889999999999999988886   88999999999999999987654

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=5.4e-08  Score=62.99  Aligned_cols=42  Identities=24%  Similarity=0.545  Sum_probs=38.1

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT   78 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~   78 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|+++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            455677889999999999999999999999999999999985

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=4.9e-08  Score=63.62  Aligned_cols=42  Identities=26%  Similarity=0.371  Sum_probs=38.7

Q ss_pred             HHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCC
Q psy4572          66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQ  107 (345)
Q Consensus        66 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~  107 (345)
                      .+.|.++++|.|++|++.|.....|..|++.|.++++|.|+.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            346889999999999999999999999999999999999974

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=2.2e-09  Score=78.98  Aligned_cols=61  Identities=20%  Similarity=0.243  Sum_probs=28.7

Q ss_pred             cccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCC
Q psy4572          36 RKSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVT   99 (345)
Q Consensus        36 ~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~   99 (345)
                      .|...+.+.+++.|+.|++.|. ...|..|+ .|.+++|+.|+.|++.|.. ..|..|+++|.+
T Consensus         7 ~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~   67 (75)
T 2d9k_A            7 GHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEVCGR   67 (75)
T ss_dssp             CCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHHBTT
T ss_pred             hhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHHccC
Confidence            3333344444555555555552 44455554 4444455555555554442 444555444433

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=5.7e-08  Score=62.76  Aligned_cols=27  Identities=26%  Similarity=0.482  Sum_probs=11.1

Q ss_pred             CCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         155 GAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       155 ~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      ++++|.|+.|++.|.....|..|++.|
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (43)
T 2yrm_A            7 GNGAFFCNECDCRFSEEASLKRHTLQT   33 (43)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHHHHH
T ss_pred             CCCCEECCCCCCeeCChHHHHHHHHhh
Confidence            333444444444444444444444443

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=7e-08  Score=63.23  Aligned_cols=41  Identities=24%  Similarity=0.382  Sum_probs=37.1

Q ss_pred             CCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccc
Q psy4572          39 TPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTV   79 (345)
Q Consensus        39 ~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~   79 (345)
                      ..+.++++|+|+.|++.|.....|..|++.|++++||.|.+
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            34566789999999999999999999999999999999974

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=6.3e-08  Score=63.78  Aligned_cols=43  Identities=21%  Similarity=0.373  Sum_probs=38.9

Q ss_pred             cCCCCCCCceecc--ccccccCCHHHHHHHHHHcCCCCceecccc
Q psy4572          38 STPQKLDGPHKCE--HCEKEFENRRALKRHEKNHTQEKTFPCTVC   80 (345)
Q Consensus        38 ~~~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C   80 (345)
                      ...+.++++|+|.  .|++.|.....|..|++.|++++||+|..|
T Consensus         4 ~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3445677899998  899999999999999999999999999988

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=5.5e-08  Score=63.67  Aligned_cols=43  Identities=30%  Similarity=0.527  Sum_probs=38.6

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCC-CCceeccc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQ-EKTFPCTV   79 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~-~k~~~C~~   79 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++ ++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            44566778899999999999999999999999999 99999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.50  E-value=3.3e-08  Score=64.21  Aligned_cols=30  Identities=37%  Similarity=0.846  Sum_probs=12.5

Q ss_pred             HhcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         152 AKHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       152 ~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      +|.++++|.|++|++.|...+.|..|++.|
T Consensus         6 ~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (44)
T 2epv_A            6 SGSGEKPYECNECGKAFIWKSLLIVHERTH   35 (44)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHGGG
T ss_pred             ccCCCcCeECCCCCcccCchHHHHHHHhHh
Confidence            333344444444444444444444444444

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=6.5e-08  Score=62.60  Aligned_cols=42  Identities=24%  Similarity=0.367  Sum_probs=38.0

Q ss_pred             ccCCCCCCCceeccccccccCCHHHHHHHHHHcCCCCceecc
Q psy4572          37 KSTPQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCT   78 (345)
Q Consensus        37 ~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~   78 (345)
                      +...+.++++|.|+.|++.|.....|..|++.|++++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455677789999999999999999999999999999999984

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=8.3e-08  Score=61.09  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=35.1

Q ss_pred             CCCCCCceeccccccccCCHHHHHHHHHHcCCCCceec
Q psy4572          40 PQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPC   77 (345)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C   77 (345)
                      .+.++++|.|+.|++.|.....|..|++.|++++||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            45567899999999999999999999999999999987

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=8.2e-08  Score=70.43  Aligned_cols=67  Identities=18%  Similarity=0.176  Sum_probs=59.2

Q ss_pred             HHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHHHHHHHhcCCC
Q psy4572          60 RALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKHRKEY  129 (345)
Q Consensus        60 ~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~~~  129 (345)
                      ..|..|+++|.+++++.|+.|++.|. ...|..|. .|.+++++.|+.|++.|.. ..|..|++.|.++.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHHBTTBS
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHHccCCc
Confidence            34667888899999999999999994 89999999 8999999999999999874 88999999987653

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.38  E-value=2.9e-07  Score=57.83  Aligned_cols=36  Identities=17%  Similarity=0.399  Sum_probs=18.0

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHhcCCCCCccC
Q psy4572          70 TQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKC  105 (345)
Q Consensus        70 ~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C  105 (345)
                      .++++|.|++|++.|.....|..|++.|.++++|.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            344455555555555555555555555555544443

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.28  E-value=2.3e-07  Score=57.42  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=16.9

Q ss_pred             HHHcCCCCceeccccccccCCHHHHHHHHHhcC
Q psy4572          66 EKNHTQEKTFPCTVCLKMFKTKAQREEHIASHV   98 (345)
Q Consensus        66 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~   98 (345)
                      ++.|.+++||.|+.|++.|.....|..|++.|.
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            344455555555555555555555555555444

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=2.7e-07  Score=57.09  Aligned_cols=32  Identities=22%  Similarity=0.543  Sum_probs=14.5

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      |.++++|.|+.|++.|.....|..|++.|+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            34444444444444444444444444444443

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.26  E-value=1.2e-08  Score=77.47  Aligned_cols=41  Identities=17%  Similarity=0.332  Sum_probs=23.4

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccc
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCL   81 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~   81 (345)
                      +.++++|.|+.|++.|.....|..|+++|++++||+|..|.
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~   60 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE   60 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh
Confidence            44455566666666666666666666655555555555443

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.24  E-value=8.1e-07  Score=53.97  Aligned_cols=31  Identities=23%  Similarity=0.478  Sum_probs=14.6

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          70 TQEKTFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        70 ~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      .++++|.|+.|++.|.....|..|++.|+++
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            3444444444444444444444444444443

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.23  E-value=3.3e-07  Score=56.68  Aligned_cols=29  Identities=34%  Similarity=0.755  Sum_probs=12.4

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      |.+++||+|+.|++.|.....|..|++.|
T Consensus         6 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            6 STGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            33444444444444444444444444443

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.21  E-value=9.7e-07  Score=53.76  Aligned_cols=32  Identities=31%  Similarity=0.691  Sum_probs=16.3

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      |.++++|.|++|++.|.....|..|++.|+++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            34445555555555555555555555555444

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=2.4e-08  Score=75.77  Aligned_cols=39  Identities=13%  Similarity=0.222  Sum_probs=17.7

Q ss_pred             hcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCCCCcc
Q psy4572         125 HRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPYQCET  163 (345)
Q Consensus       125 h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~  163 (345)
                      |.++++|.|+.|++.|.....|..|+++|++++||+|..
T Consensus        20 H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~   58 (88)
T 1x6f_A           20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKR   58 (88)
T ss_dssp             CCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccch
Confidence            344444444444444444444444444444444444433

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.17  E-value=1.1e-06  Score=53.12  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=16.3

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCCCce
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQEKTF   75 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~   75 (345)
                      +|.|+.|++.|.....|..|+++|+++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            455555555555555555555555555544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.15  E-value=1.6e-06  Score=52.37  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             ceeccccccccCCHHHHHHHHHhcCCCCCcc
Q psy4572          74 TFPCTVCLKMFKTKAQREEHIASHVTDSEFK  104 (345)
Q Consensus        74 ~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~  104 (345)
                      ||.|++|++.|.....|..|+++|.++++|.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            5666666666666666666666666666554

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.12  E-value=2.3e-06  Score=61.35  Aligned_cols=40  Identities=20%  Similarity=0.245  Sum_probs=27.7

Q ss_pred             CCCCCCceeccc--cccccCCHHHHHHHH-HHcCCCCceeccc
Q psy4572          40 PQKLDGPHKCEH--CEKEFENRRALKRHE-KNHTQEKTFPCTV   79 (345)
Q Consensus        40 ~~~~~~~~~C~~--C~k~F~~~~~L~~H~-~~h~~~k~~~C~~   79 (345)
                      ...+++||+|+.  |++.|.....|..|+ ++|++++|+.|..
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            345567777754  777777777777776 5677777777654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=2.5e-06  Score=52.58  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=31.3

Q ss_pred             CCCCCCceeccccccccCCHHHHHHHHHHcCCCCc
Q psy4572          40 PQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKT   74 (345)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~   74 (345)
                      .+.++++|.|+.|++.|.....|..|++.|++++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            35567899999999999999999999999998864

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.09  E-value=2.9e-06  Score=51.39  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHHcCCCCc
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKT   74 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~   74 (345)
                      +.++++|.|+.|++.|.....|..|++.|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            3456889999999999999999999999998764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.09  E-value=6.1e-06  Score=59.18  Aligned_cols=39  Identities=18%  Similarity=0.314  Sum_probs=35.4

Q ss_pred             cCCCCceeccc--cccccCCHHHHHHHH-HhcCCCCCccCCC
Q psy4572          69 HTQEKTFPCTV--CLKMFKTKAQREEHI-ASHVTDSEFKCDQ  107 (345)
Q Consensus        69 h~~~k~~~C~~--C~k~F~~~~~L~~H~-~~h~~~k~~~C~~  107 (345)
                      +++++||+|++  |++.|....+|..|+ ++|++++|+.|..
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            46889999976  999999999999998 6899999999965

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=3e-06  Score=51.73  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=10.8

Q ss_pred             CceeccccccccCCHHHHHHHHHHcC
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHT   70 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~   70 (345)
                      ++|.|+.|++.|.....|..|++.|+
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            8 KPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            33444444444444444444444433

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.05  E-value=3.3e-06  Score=51.26  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=30.5

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHHcCCCCc
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKT   74 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~   74 (345)
                      +.++++|.|+.|++.|.....|..|++.|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            3467899999999999999999999999998764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.03  E-value=3.7e-06  Score=51.44  Aligned_cols=29  Identities=24%  Similarity=0.579  Sum_probs=12.4

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHhcC
Q psy4572          70 TQEKTFPCTVCLKMFKTKAQREEHIASHV   98 (345)
Q Consensus        70 ~~~k~~~C~~C~k~F~~~~~L~~H~~~h~   98 (345)
                      .+++||.|++|++.|.....|..|++.|.
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            5 SSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            33444444444444444444444444443

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=4.5e-06  Score=52.72  Aligned_cols=28  Identities=29%  Similarity=0.418  Sum_probs=12.8

Q ss_pred             CCceeccc--cccccCCHHHHHHHHHHcCC
Q psy4572          44 DGPHKCEH--CEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        44 ~~~~~C~~--C~k~F~~~~~L~~H~~~h~~   71 (345)
                      ++||+|+.  |++.|.....|..|+++|++
T Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~r~Htg   36 (38)
T 2eln_A            7 GILLKCPTDGCDYSTPDKYKLQAHLKVHTA   36 (38)
T ss_dssp             CCCEECSSSSCCCEESCHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHhcCC
Confidence            34444443  44444444444444444443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.01  E-value=1.7e-06  Score=53.63  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=15.4

Q ss_pred             cCCCCceeccccccccCCHHHHHHH-HHhcC
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEH-IASHV   98 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H-~~~h~   98 (345)
                      |++++||+|+.|++.|.....|..| ++.|.
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            4445555555555555555555555 44443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.01  E-value=3.9e-06  Score=52.04  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=14.3

Q ss_pred             CCCceecc--ccccccCCHHHHHHHHHhcCCCCC
Q psy4572          71 QEKTFPCT--VCLKMFKTKAQREEHIASHVTDSE  102 (345)
Q Consensus        71 ~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~  102 (345)
                      ++++|.|+  .|++.|.....|..|++.|.++++
T Consensus         3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            34444444  244444444444444444444443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=5.6e-06  Score=50.51  Aligned_cols=26  Identities=38%  Similarity=0.768  Sum_probs=10.6

Q ss_pred             CceeccccccccCCHHHHHHHHHHcC
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHT   70 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~   70 (345)
                      ++|.|+.|++.|.....|..|++.|+
T Consensus         8 ~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            8 KTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeecCcCCCCcCchHHHHHHHHHhc
Confidence            33444444444444444444444433

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=4.6e-06  Score=51.01  Aligned_cols=29  Identities=24%  Similarity=0.628  Sum_probs=12.5

Q ss_pred             CCCCceeccccccccCCHHHHHHHHHhcC
Q psy4572          70 TQEKTFPCTVCLKMFKTKAQREEHIASHV   98 (345)
Q Consensus        70 ~~~k~~~C~~C~k~F~~~~~L~~H~~~h~   98 (345)
                      .+++||.|+.|++.|.....|..|++.|.
T Consensus         5 ~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            5 SSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            33444444444444444444444444443

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=3.4e-06  Score=52.20  Aligned_cols=28  Identities=18%  Similarity=0.119  Sum_probs=21.0

Q ss_pred             cCceeecCccccccCCHHHHHHH-HHHhc
Q psy4572         186 ERLHYQCELCGKSFNNKQTFSLS-NMYVL  213 (345)
Q Consensus       186 ~~k~y~C~~Cgk~F~~~~~L~~H-~~~~H  213 (345)
                      +++||+|+.|++.|.++..|.+| ++.|.
T Consensus         6 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            6 SGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            56778888888888888888888 55554

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=2.5e-06  Score=52.64  Aligned_cols=30  Identities=20%  Similarity=0.427  Sum_probs=13.1

Q ss_pred             cCCCCceeccccccccCCH-HHHHHHHHhcC
Q psy4572          69 HTQEKTFPCTVCLKMFKTK-AQREEHIASHV   98 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~-~~L~~H~~~h~   98 (345)
                      |.+++||.|+.|++.|... ..|..|++.|.
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            3344444444444444444 44444444443

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=7.4e-06  Score=49.92  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=31.0

Q ss_pred             HcCCCCceeccccccccCCHHHHHHHHHhcCCCC
Q psy4572          68 NHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDS  101 (345)
Q Consensus        68 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k  101 (345)
                      .|.+++||.|+.|++.|.....|..|++.|.+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4778999999999999999999999999998763

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=6.4e-06  Score=50.36  Aligned_cols=28  Identities=32%  Similarity=0.592  Sum_probs=13.5

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCC
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      +++|.|+.|++.|.....|..|++.|++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRIHTN   34 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHCC
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHHhCC
Confidence            3444454455555444444444444443

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.93  E-value=9.2e-06  Score=49.60  Aligned_cols=34  Identities=32%  Similarity=0.561  Sum_probs=30.0

Q ss_pred             CCCCCCceeccccccccCCHHHHHHHHHHcCCCC
Q psy4572          40 PQKLDGPHKCEHCEKEFENRRALKRHEKNHTQEK   73 (345)
Q Consensus        40 ~~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k   73 (345)
                      .+.++++|+|+.|++.|.....|..|++.|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            3456789999999999999999999999998763

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=1e-05  Score=51.09  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=29.6

Q ss_pred             cCCCCceeccc--cccccCCHHHHHHHHHhcCCC
Q psy4572          69 HTQEKTFPCTV--CLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        69 h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      +++++||+|++  |++.|..+..|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            57899999987  999999999999999999875

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.91  E-value=5.4e-06  Score=51.69  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=10.2

Q ss_pred             CCceeccccccccCCHHHHHHHH
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHE   66 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~   66 (345)
                      ++||+|+.|++.|...+.|.+|+
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH
T ss_pred             ccCeECCCCCCccCCHhHccCcC
Confidence            34444444444444444444443

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.90  E-value=1e-05  Score=49.28  Aligned_cols=34  Identities=32%  Similarity=0.516  Sum_probs=30.8

Q ss_pred             HcCCCCceeccccccccCCHHHHHHHHHhcCCCC
Q psy4572          68 NHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDS  101 (345)
Q Consensus        68 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k  101 (345)
                      .|.++++|.|++|++.|.....|..|++.|.+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            3678899999999999999999999999998764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.90  E-value=1.1e-05  Score=49.33  Aligned_cols=34  Identities=29%  Similarity=0.584  Sum_probs=30.5

Q ss_pred             HcCCCCceeccccccccCCHHHHHHHHHhcCCCC
Q psy4572          68 NHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDS  101 (345)
Q Consensus        68 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k  101 (345)
                      .|.++++|.|+.|++.|.....|..|++.|.+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            3678899999999999999999999999998763

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.88  E-value=7.3e-06  Score=46.60  Aligned_cols=25  Identities=12%  Similarity=0.247  Sum_probs=19.1

Q ss_pred             ceeecCccccccCCHHHHHHHHHHh
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      +||.|+.||+.|.+...|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            5678888888888888888887664

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.88  E-value=7.5e-06  Score=54.05  Aligned_cols=32  Identities=28%  Similarity=0.663  Sum_probs=16.7

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHH-hcCCC
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIA-SHVTD  100 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~-~h~~~  100 (345)
                      |+++++|.|.+|++.|.....|..|++ .|.++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            445555555555555555555555555 44443

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=9e-06  Score=49.65  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=29.3

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHHcCCCC
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKNHTQEK   73 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k   73 (345)
                      +.++++|.|+.|++.|.....|..|++.|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            456789999999999999999999999998763

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.87  E-value=1.2e-05  Score=50.07  Aligned_cols=27  Identities=22%  Similarity=0.565  Sum_probs=17.3

Q ss_pred             cCceeecCccccccCCHHHHHHHHHHh
Q psy4572         186 ERLHYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       186 ~~k~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      +++||+|+.||+.|.+++.|.+|+.++
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~py~   31 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQAYY   31 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHHHHT
T ss_pred             CccCeECCCCCCccCCHhHccCcCCeE
Confidence            556666666666666666666666433

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.85  E-value=6.3e-06  Score=47.19  Aligned_cols=26  Identities=27%  Similarity=0.531  Sum_probs=17.7

Q ss_pred             ceeecCccccccCCHHHHHHHHHHhc
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      +||.|+.|++.|.+...|..|++.|.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            46777777777777777777766553

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.83  E-value=5.7e-06  Score=47.23  Aligned_cols=25  Identities=16%  Similarity=0.287  Sum_probs=18.0

Q ss_pred             ceeecCccccccCCHHHHHHHHHHh
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      +||.|+.||+.|.++..|.+|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4677777777777777777776654

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.80  E-value=1.5e-05  Score=46.03  Aligned_cols=28  Identities=25%  Similarity=0.662  Sum_probs=15.4

Q ss_pred             CceeccccccccCCHHHHHHHHHHcCCC
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      ++|.|+.|++.|.....|..|++.|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            3455555555555555555555555443

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.80  E-value=8.5e-06  Score=50.11  Aligned_cols=31  Identities=19%  Similarity=0.375  Sum_probs=16.6

Q ss_pred             cCCCCCccCCCCcccccCH-HHHHHHHHHhcC
Q psy4572          97 HVTDSEFKCDQCPYVAKRI-KYLRYHMKKHRK  127 (345)
Q Consensus        97 h~~~k~~~C~~C~~~f~~~-~~L~~H~~~h~~  127 (345)
                      |.++++|.|+.|++.|... ..|..|++.|.+
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~   35 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEG   35 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHHHHT
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHhcCC
Confidence            4445555555555555555 555555555543

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.76  E-value=2e-05  Score=45.38  Aligned_cols=28  Identities=29%  Similarity=0.667  Sum_probs=19.3

Q ss_pred             CceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          73 KTFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        73 k~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      +||.|+.|++.|.....|..|++.|.++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            5677777777777777777777766554

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.76  E-value=1.8e-05  Score=45.35  Aligned_cols=27  Identities=41%  Similarity=0.812  Sum_probs=15.0

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      +|.|+.|++.|.....|..|++.|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            455555555555555555555555543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.75  E-value=1.9e-05  Score=45.28  Aligned_cols=25  Identities=16%  Similarity=0.478  Sum_probs=13.9

Q ss_pred             eeecCccccccCCHHHHHHHHHHhc
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      ||.|+.|++.|.+...|..|++.|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhc
Confidence            4555555555555555555555544

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.75  E-value=1.9e-05  Score=48.71  Aligned_cols=18  Identities=28%  Similarity=0.562  Sum_probs=7.1

Q ss_pred             cccccCCHHHHHHHHHHc
Q psy4572          52 CEKEFENRRALKRHEKNH   69 (345)
Q Consensus        52 C~k~F~~~~~L~~H~~~h   69 (345)
                      |++.|.....|..|+++|
T Consensus        16 C~k~f~~~~~L~~H~~~H   33 (37)
T 1va1_A           16 CGKVYGKTSHLRAHLRWH   33 (37)
T ss_dssp             CCCEESCHHHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHHhc
Confidence            444443333333333333

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.74  E-value=2.2e-05  Score=55.94  Aligned_cols=28  Identities=29%  Similarity=0.445  Sum_probs=14.0

Q ss_pred             CCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         155 GAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       155 ~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      +++||+|..|++.|.....|.+|+++|+
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            3444555555555555555555555544

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.72  E-value=1.4e-05  Score=45.95  Aligned_cols=26  Identities=27%  Similarity=0.457  Sum_probs=13.5

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      +|.|+.|++.|.....|..|++.|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHEN   27 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGGS
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhcC
Confidence            35555555555555555555555444

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.72  E-value=1.8e-05  Score=45.34  Aligned_cols=27  Identities=44%  Similarity=0.837  Sum_probs=14.6

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      +|.|+.|++.|.....|..|++.|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            455555555555555555555555443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.71  E-value=9.3e-06  Score=46.32  Aligned_cols=26  Identities=38%  Similarity=0.634  Sum_probs=19.7

Q ss_pred             CCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         156 AQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       156 ~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      ++||+|+.||+.|...+.|..|++.|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhc
Confidence            35677888888888888888887766

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.70  E-value=1.8e-05  Score=45.58  Aligned_cols=27  Identities=26%  Similarity=0.458  Sum_probs=15.2

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      +|.|+.|++.|.....|..|++.|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            455555555555555555555555544

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.70  E-value=1.3e-06  Score=52.42  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=18.0

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCCCce
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQEKTF   75 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~   75 (345)
                      +|.|+.|++.|.....|..|+++|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            456666666666666666666666655554

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.69  E-value=4.7e-05  Score=54.20  Aligned_cols=40  Identities=23%  Similarity=0.360  Sum_probs=27.3

Q ss_pred             CCCCCceeccccccccCCHHHHHHHHHHcCCCCceeccccc
Q psy4572          41 QKLDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCL   81 (345)
Q Consensus        41 ~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~   81 (345)
                      +..+++|+|..|++.|.....|..|+++|+++. ..|..+.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            445577888888888888888888888777653 3444443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.69  E-value=2.1e-05  Score=45.17  Aligned_cols=28  Identities=29%  Similarity=0.463  Sum_probs=18.4

Q ss_pred             CceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          73 KTFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        73 k~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      +||.|+.|++.|.....|..|++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            3566777777777766777776666554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.68  E-value=2.7e-05  Score=44.07  Aligned_cols=25  Identities=24%  Similarity=0.614  Sum_probs=13.6

Q ss_pred             CceeccccccccCCHHHHHHHHHHc
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNH   69 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h   69 (345)
                      ++|.|+.|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            3455555555555555555555544

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.85  E-value=5.9e-06  Score=46.53  Aligned_cols=24  Identities=29%  Similarity=0.503  Sum_probs=15.3

Q ss_pred             eeecCccccccCCHHHHHHHHHHh
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      ||.|+.||+.|.+...|..|++.|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            566666666666666666666554

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.65  E-value=2.2e-05  Score=51.69  Aligned_cols=32  Identities=31%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             cCCCCCccCCCCcccccCHHHHHHHHH-HhcCC
Q psy4572          97 HVTDSEFKCDQCPYVAKRIKYLRYHMK-KHRKE  128 (345)
Q Consensus        97 h~~~k~~~C~~C~~~f~~~~~L~~H~~-~h~~~  128 (345)
                      |.++++|.|..|++.|.....|..|++ .|.++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            455666666666666666666666666 55544

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.65  E-value=2.3e-05  Score=44.66  Aligned_cols=24  Identities=29%  Similarity=0.700  Sum_probs=12.5

Q ss_pred             ceeccccccccCCHHHHHHHHHHc
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNH   69 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h   69 (345)
                      +|.|+.|++.|.....|..|++.|
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTTS
T ss_pred             CccCCCCCcccCCHHHHHHHHHhc
Confidence            455555555555555555555444

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.65  E-value=2.9e-05  Score=44.40  Aligned_cols=27  Identities=26%  Similarity=0.538  Sum_probs=17.0

Q ss_pred             ceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          74 TFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        74 ~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      ||.|+.|++.|.....|..|++.|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            566666666666666666666666543

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.64  E-value=2.9e-05  Score=44.71  Aligned_cols=27  Identities=19%  Similarity=0.381  Sum_probs=15.8

Q ss_pred             ceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          74 TFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        74 ~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      +|.|+.|++.|.....|..|++.|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            455666666666666666665555544

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.64  E-value=2.3e-06  Score=51.27  Aligned_cols=26  Identities=27%  Similarity=0.561  Sum_probs=17.0

Q ss_pred             CCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         157 QPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       157 k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      +||+|+.|++.|...+.|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHc
Confidence            35666666666666666666666665

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.62  E-value=4.1e-05  Score=47.13  Aligned_cols=33  Identities=18%  Similarity=0.447  Sum_probs=29.8

Q ss_pred             cCCCCceeccc--cccccCCHHHHHHHHHhcCCCC
Q psy4572          69 HTQEKTFPCTV--CLKMFKTKAQREEHIASHVTDS  101 (345)
Q Consensus        69 h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~k  101 (345)
                      |+++++|.|.+  |++.|.....|..|+++|.+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            67889999995  9999999999999999998763

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.61  E-value=2e-05  Score=44.46  Aligned_cols=24  Identities=33%  Similarity=0.624  Sum_probs=13.3

Q ss_pred             eecCccccccCCHHHHHHHHHHhc
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      |.|+.|++.|.++..|.+|++.|.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcC
Confidence            555555555555555555555443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.60  E-value=2.4e-05  Score=44.67  Aligned_cols=25  Identities=20%  Similarity=0.393  Sum_probs=13.0

Q ss_pred             eeecCccccccCCHHHHHHHHHHhc
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      ||.|+.|++.|.+...|..|++.|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhc
Confidence            4555555555555555555555443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.60  E-value=2.1e-05  Score=44.89  Aligned_cols=26  Identities=46%  Similarity=0.833  Sum_probs=13.7

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      +|.|+.|++.|.....|..|++.|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            35555555555555555555555544

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.59  E-value=8.3e-06  Score=53.45  Aligned_cols=31  Identities=35%  Similarity=0.673  Sum_probs=13.6

Q ss_pred             cCCCCceecc--ccccccCCHHHHHHHHHhcCC
Q psy4572          69 HTQEKTFPCT--VCLKMFKTKAQREEHIASHVT   99 (345)
Q Consensus        69 h~~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~   99 (345)
                      |.+++||.|+  .|++.|.....|..|++.|.+
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~   45 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE   45 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTT
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHHccC
Confidence            4444444442  344444444444444444433

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.74  E-value=9.6e-06  Score=46.80  Aligned_cols=26  Identities=23%  Similarity=0.459  Sum_probs=18.0

Q ss_pred             eeecCccccccCCHHHHHHHHHHhcC
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      ||.|+.||+.|.+...|..|++.|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            56777777777777777777766543

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.73  E-value=1e-05  Score=46.72  Aligned_cols=27  Identities=37%  Similarity=0.714  Sum_probs=15.3

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      +|.|+.|++.|.....|..|++.|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            455555666555555555555555443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.71  E-value=1.1e-05  Score=46.74  Aligned_cols=26  Identities=15%  Similarity=0.299  Sum_probs=16.4

Q ss_pred             ceeecCccccccCCHHHHHHHHHHhc
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      +||.|+.||+.|.+...|..|++.|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            35666666666666666666666554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.55  E-value=4e-05  Score=44.90  Aligned_cols=27  Identities=41%  Similarity=0.839  Sum_probs=13.9

Q ss_pred             ceecc--ccccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCE--HCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~--~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      ||.|+  .|++.|.....|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            34554  5555555555555555555443

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.70  E-value=1.1e-05  Score=46.66  Aligned_cols=27  Identities=41%  Similarity=0.819  Sum_probs=15.6

Q ss_pred             CceeccccccccCCHHHHHHHHHHcCC
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      ++|.|+.|++.|.....|..|++.|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTG   28 (30)
Confidence            345566666666666666666555544

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.70  E-value=1.1e-05  Score=45.30  Aligned_cols=25  Identities=40%  Similarity=0.851  Sum_probs=19.7

Q ss_pred             CCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         157 QPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       157 k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      +||.|+.||+.|...+.|..|++.|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4678888888888888888887776

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.54  E-value=3e-05  Score=43.68  Aligned_cols=24  Identities=42%  Similarity=0.858  Sum_probs=12.2

Q ss_pred             eeccccccccCCHHHHHHHHHHcC
Q psy4572          47 HKCEHCEKEFENRRALKRHEKNHT   70 (345)
Q Consensus        47 ~~C~~C~k~F~~~~~L~~H~~~h~   70 (345)
                      |.|+.|++.|.....|..|++.|+
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHcC
Confidence            445555555555555555554444

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.53  E-value=4.4e-05  Score=45.02  Aligned_cols=26  Identities=38%  Similarity=0.862  Sum_probs=13.7

Q ss_pred             ceecc--ccccccCCHHHHHHHHHHcCC
Q psy4572          46 PHKCE--HCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        46 ~~~C~--~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      +|.|+  .|++.|.....|..|+++|++
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H~~   30 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHccC
Confidence            45555  455555555555555555544

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.51  E-value=5.9e-05  Score=44.14  Aligned_cols=27  Identities=30%  Similarity=0.579  Sum_probs=16.2

Q ss_pred             ceecc--ccccccCCHHHHHHHHHhcCCC
Q psy4572          74 TFPCT--VCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        74 ~~~C~--~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      ||.|+  .|++.|.....|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            45665  5666666666666666665543

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.50  E-value=6.2e-05  Score=44.35  Aligned_cols=28  Identities=25%  Similarity=0.460  Sum_probs=16.0

Q ss_pred             Cceecc--ccccccCCHHHHHHHHHhcCCC
Q psy4572          73 KTFPCT--VCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        73 k~~~C~--~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      +||.|+  .|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            455565  5666666666666665555543

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.37  E-value=8.7e-05  Score=42.33  Aligned_cols=25  Identities=28%  Similarity=0.659  Sum_probs=17.7

Q ss_pred             eeecC--ccccccCCHHHHHHHHHHhc
Q psy4572         189 HYQCE--LCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       189 ~y~C~--~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      +|.|+  .|++.|.+...|..|++.|.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            57777  77777777777777776654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.37  E-value=5.4e-05  Score=43.69  Aligned_cols=26  Identities=35%  Similarity=0.682  Sum_probs=13.1

Q ss_pred             ceeccccccccCCHHHHHHH-HHHcCC
Q psy4572          46 PHKCEHCEKEFENRRALKRH-EKNHTQ   71 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H-~~~h~~   71 (345)
                      +|.|+.|++.|.....|..| ++.|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            34555555555555555555 344443

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.35  E-value=6.1e-05  Score=49.19  Aligned_cols=35  Identities=23%  Similarity=0.548  Sum_probs=30.3

Q ss_pred             CCCCCCCceecc--ccccccCCHHHHHHHHHHcCCCC
Q psy4572          39 TPQKLDGPHKCE--HCEKEFENRRALKRHEKNHTQEK   73 (345)
Q Consensus        39 ~~~~~~~~~~C~--~C~k~F~~~~~L~~H~~~h~~~k   73 (345)
                      ..+.++++|.|+  .|++.|.....|..|++.|++++
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            346678899995  79999999999999999998864

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.32  E-value=8e-05  Score=42.95  Aligned_cols=26  Identities=19%  Similarity=0.484  Sum_probs=15.0

Q ss_pred             ceeccccccccCCHHHHHHH-HHhcCC
Q psy4572          74 TFPCTVCLKMFKTKAQREEH-IASHVT   99 (345)
Q Consensus        74 ~~~C~~C~k~F~~~~~L~~H-~~~h~~   99 (345)
                      ||.|+.|++.|.....|..| ++.|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccC
Confidence            45666666666666666666 345544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.00042  Score=48.81  Aligned_cols=51  Identities=14%  Similarity=0.117  Sum_probs=37.7

Q ss_pred             chhhccCCHHHHHHHHh-hhCCCC---cCceeecC--ccccccCCHHHHHHHHHHhc
Q psy4572         163 TCRKLFLSKYSLFTHNK-KHLPIE---ERLHYQCE--LCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       163 ~Cgk~F~s~s~L~~H~~-~H~~~~---~~k~y~C~--~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      .|++.|.+...|..|+. .|.+.+   ...+|.|.  .|++.+.....|..|++..|
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            37778888888888874 554332   23478896  79988888889999988876

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.16  E-value=0.00022  Score=40.56  Aligned_cols=25  Identities=44%  Similarity=0.876  Sum_probs=13.3

Q ss_pred             ceecc--ccccccCCHHHHHHHHHHcC
Q psy4572          46 PHKCE--HCEKEFENRRALKRHEKNHT   70 (345)
Q Consensus        46 ~~~C~--~C~k~F~~~~~L~~H~~~h~   70 (345)
                      +|.|+  .|++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            35555  55555555555555555543

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.0023  Score=44.96  Aligned_cols=16  Identities=25%  Similarity=0.225  Sum_probs=6.5

Q ss_pred             hhhccCCHHHHHHHHh
Q psy4572         164 CRKLFLSKYSLFTHNK  179 (345)
Q Consensus       164 Cgk~F~s~s~L~~H~~  179 (345)
                      |++.+.....|..|++
T Consensus        46 C~~~~~~~~~L~~Hir   61 (64)
T 1zw8_A           46 CDFLGDDTASIVNHIN   61 (64)
T ss_dssp             CCCEESSHHHHHHHHH
T ss_pred             CcCCCCChHHHHhhcc
Confidence            4444333344444443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.79  E-value=0.0012  Score=55.75  Aligned_cols=137  Identities=18%  Similarity=0.317  Sum_probs=84.8

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHH-----HH
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIK-----YL  118 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~-----~L  118 (345)
                      +..+.|++|...|..               |..+ .||-.|-.. -+...+...    ...|+.|...+....     .+
T Consensus        16 ~~~~~C~IC~~~~~~---------------pv~~-~CgH~fC~~-Ci~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~   74 (170)
T 3hcs_A           16 ESKYECPICLMALRE---------------AVQT-PCGHRFCKA-CIIKSIRDA----GHKCPVDNEILLENQLFPDNFA   74 (170)
T ss_dssp             CGGGBCTTTCSBCSS---------------EEEC-TTSCEEEHH-HHHHHHHHH----CSBCTTTCCBCCGGGCEECHHH
T ss_pred             CCCCCCCCCChhhcC---------------cEEC-CCCCHHHHH-HHHHHHHhC----CCCCCCCccCcchhhhhhhHHH
Confidence            345899999988764               3444 377666433 344444321    137888877665421     11


Q ss_pred             HHHHHHhcCCCcccc--CCCCCCcCCHHHHHHHHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccc
Q psy4572         119 RYHMKKHRKEYSAYC--EPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCG  196 (345)
Q Consensus       119 ~~H~~~h~~~~~~~C--~~C~k~F~~~~~l~~H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cg  196 (345)
                      .+-+    .+....|  ..|+..+. ...+..|. ..-.-.+..|+.|+..+ .+..+..|....-   ..++-.|+.|+
T Consensus        75 ~~~i----~~l~v~C~n~GC~~~~~-~~~l~~H~-~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C---~~r~~~C~~C~  144 (170)
T 3hcs_A           75 KREI----LSLMVKCPNEGCLHKME-LRHLEDHQ-AHCEFALMDCPQCQRPF-QKFHINIHILKDC---PRRQVSCDNCA  144 (170)
T ss_dssp             HHHH----HTSEEECCSTTCCCEEE-GGGHHHHH-TTCTTSEEECTTTCCEE-EGGGHHHHHHHTC---TTCEEECTTTC
T ss_pred             HHHH----hhcccCCCCCCCCceec-HhHHHHHH-hcCCceeeECCCCChHH-HHHHHHHHhhhhC---CCCCeECCCCC
Confidence            1111    2345567  46776554 45677776 33445667888898887 5667888886554   45567899998


Q ss_pred             cccCCHHHHHHHHHHh
Q psy4572         197 KSFNNKQTFSLSNMYV  212 (345)
Q Consensus       197 k~F~~~~~L~~H~~~~  212 (345)
                      ..|.. ..+..|...+
T Consensus       145 ~~~~~-~~l~~H~~~~  159 (170)
T 3hcs_A          145 ASMAF-EDKEIHDQNC  159 (170)
T ss_dssp             CEEEG-GGHHHHHTTC
T ss_pred             CccCH-HHHHhHHHhC
Confidence            88864 5678887544

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.91  E-value=0.0032  Score=50.58  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=47.6

Q ss_pred             CCccccCCCCCCcCCHHHHHHHH--HHhcCC-CCCCCcch-------hhccCCHHHHHHHHhhhCCCCcCceeecCcccc
Q psy4572         128 EYSAYCEPCQEGFFSRDKLETHN--IAKHGA-QPYQCETC-------RKLFLSKYSLFTHNKKHLPIEERLHYQCELCGK  197 (345)
Q Consensus       128 ~~~~~C~~C~k~F~~~~~l~~H~--~~hh~~-k~y~C~~C-------gk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk  197 (345)
                      .+++.|..|+..|.+...+..|.  +.|... +.+.+. +       ++.+....    +...+   .+...|.|.+|++
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~-~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~C~~C~~  101 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI-NQGEDSVPAKKFKAAP----AEISD---GEDRSKCCPVCNM  101 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH-TTCCCCCSCCCCSCCS----SCCSS---CCCTTTEETTTTE
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcc-cCcccCCCCCccCCCc----ccccc---CCCCCeEcCCCCC
Confidence            35688999999999999999987  333211 112111 1       12222111    11111   2455799999999


Q ss_pred             ccCCHHHHHHHHH
Q psy4572         198 SFNNKQTFSLSNM  210 (345)
Q Consensus       198 ~F~~~~~L~~H~~  210 (345)
                      .|.+...+..|+.
T Consensus       102 ~f~s~~~~~~H~~  114 (127)
T 1zu1_A          102 TFSSPVVAESHYI  114 (127)
T ss_dssp             ECSSHHHHHHHHT
T ss_pred             EeCCHHHHHHHHC
Confidence            9999999999975

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.27  E-value=0.011  Score=38.34  Aligned_cols=30  Identities=13%  Similarity=0.164  Sum_probs=24.7

Q ss_pred             ceeecCccccccCCHHHHHHHHHHhcCCCC
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYVLSLSN  217 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~H~~~~  217 (345)
                      .+|.|+.|+..|.....|+.|+++..+.--
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~~v   40 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPEMV   40 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcchh
Confidence            368899999999999999999998876433

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.02  E-value=0.024  Score=45.40  Aligned_cols=75  Identities=16%  Similarity=0.223  Sum_probs=50.1

Q ss_pred             CceeccccccccCCHHHHHHHH--HHcCCC-Cceecccc------ccccCCHHHHHHHHHhcCCCCCccCCCCcccccCH
Q psy4572          45 GPHKCEHCEKEFENRRALKRHE--KNHTQE-KTFPCTVC------LKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRI  115 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~--~~h~~~-k~~~C~~C------~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~  115 (345)
                      +++.|..|+..|.+...+..|.  +.|... +.+.+..+      ++.+....    +...+.+...|.|..|+..|.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~C~~~f~s~  106 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPVCNMTFSSP  106 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETTTTEECSSH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCCCCCEeCCH
Confidence            5689999999999999999998  444321 22222110      12222111    11234566779999999999999


Q ss_pred             HHHHHHHH
Q psy4572         116 KYLRYHMK  123 (345)
Q Consensus       116 ~~L~~H~~  123 (345)
                      ..+..|..
T Consensus       107 ~~~~~H~~  114 (127)
T 1zu1_A          107 VVAESHYI  114 (127)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            99999974

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=94.73  E-value=0.029  Score=33.98  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=25.0

Q ss_pred             eeecCccccccCCHHHHHHHHHHhcCCCC
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVLSLSN  217 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H~~~~  217 (345)
                      .|.||+|.+.|.+...|..|....|.-.+
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~~   33 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAGN   33 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSSC
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccCC
Confidence            48999999999999999999998887543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.15  E-value=0.01  Score=47.22  Aligned_cols=28  Identities=25%  Similarity=0.490  Sum_probs=16.9

Q ss_pred             hcCCCCCCCcchhhccCCHHHHHHHHhh
Q psy4572         153 KHGAQPYQCETCRKLFLSKYSLFTHNKK  180 (345)
Q Consensus       153 hh~~k~y~C~~Cgk~F~s~s~L~~H~~~  180 (345)
                      +.|+++|.|..|++.|.+...|..|.++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            4455666666666666666666666553

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.69  E-value=0.019  Score=45.64  Aligned_cols=28  Identities=11%  Similarity=0.082  Sum_probs=24.9

Q ss_pred             cCceeecCccccccCCHHHHHHHHHHhc
Q psy4572         186 ERLHYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       186 ~~k~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      +.++|.|..|++.|.+...|..|.+...
T Consensus        47 GekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           47 GGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             CCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            6789999999999999999999976543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=93.02  E-value=0.085  Score=44.05  Aligned_cols=105  Identities=21%  Similarity=0.291  Sum_probs=71.5

Q ss_pred             eeccccccccCCHH-----HHHHHHHHcCCCCceecc--ccccccCCHHHHHHHHHhcCCCCCccCCCCcccccCHHHHH
Q psy4572          47 HKCEHCEKEFENRR-----ALKRHEKNHTQEKTFPCT--VCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLR  119 (345)
Q Consensus        47 ~~C~~C~k~F~~~~-----~L~~H~~~h~~~k~~~C~--~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~~~f~~~~~L~  119 (345)
                      ..||.|...+....     .+.+-+    ......|+  -|+..+. ...+..|.. .-...+..|+.|+..+ ....+.
T Consensus        54 ~~CP~Cr~~~~~~~~~~~~~~~~~i----~~l~v~C~n~GC~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~  126 (170)
T 3hcs_A           54 HKCPVDNEILLENQLFPDNFAKREI----LSLMVKCPNEGCLHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHIN  126 (170)
T ss_dssp             SBCTTTCCBCCGGGCEECHHHHHHH----HTSEEECCSTTCCCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHH
T ss_pred             CCCCCCccCcchhhhhhhHHHHHHH----hhcccCCCCCCCCceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHH
Confidence            38999988776532     122222    23457784  5877665 456888874 3345677899999887 556689


Q ss_pred             HHHHHhcCCCccccCCCCCCcCCHHHHHHHHHHhcCCCCC
Q psy4572         120 YHMKKHRKEYSAYCEPCQEGFFSRDKLETHNIAKHGAQPY  159 (345)
Q Consensus       120 ~H~~~h~~~~~~~C~~C~k~F~~~~~l~~H~~~hh~~k~y  159 (345)
                      .|....-..+...|+.|+..+.. ..+..|...+.|+.++
T Consensus       127 ~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          127 IHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             HHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             HHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            99977777788899999988755 5678998887776543

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.22  E-value=0.16  Score=32.96  Aligned_cols=24  Identities=29%  Similarity=0.595  Sum_probs=19.3

Q ss_pred             CceeccccccccCCHHHHHHHHHH
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKN   68 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~   68 (345)
                      .+|.||.|+..|.....|+.||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            567888888888888888888874

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=89.22  E-value=0.34  Score=28.52  Aligned_cols=27  Identities=11%  Similarity=0.283  Sum_probs=22.5

Q ss_pred             eecCccccccCCHHHHHHHHHHhcCCC
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMYVLSLS  216 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~~H~~~  216 (345)
                      -.|..|.+.++.-.+|..|++..|...
T Consensus        10 qhcrfckkkysdvknlikhire~hd~~   36 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAHDPQ   36 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            468899999999999999998888643

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=88.31  E-value=0.37  Score=29.08  Aligned_cols=26  Identities=19%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      .|.||.|.+.|.+...|..|....|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            48899999999999999988776543

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=85.57  E-value=0.6  Score=28.35  Aligned_cols=28  Identities=21%  Similarity=0.422  Sum_probs=23.4

Q ss_pred             CceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         187 RLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       187 ~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      ...+.|..|+-+|..-.++..|.+.-.+
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~YC~   33 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQFYCK   33 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHHTSC
T ss_pred             cCcCeeccccceehhhHHHhhhheecCC
Confidence            4468899999999999999999887543

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=85.28  E-value=0.39  Score=34.73  Aligned_cols=13  Identities=31%  Similarity=1.099  Sum_probs=10.1

Q ss_pred             eeecCccccccCC
Q psy4572         189 HYQCELCGKSFNN  201 (345)
Q Consensus       189 ~y~C~~Cgk~F~~  201 (345)
                      .|+||.||..|.-
T Consensus        51 ~FkCP~CgEEFyG   63 (95)
T 2k5c_A           51 VFKCPVCGEEFYG   63 (95)
T ss_dssp             EEECTTTCCEEET
T ss_pred             hhcCCCccHHHhc
Confidence            5888888888753

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=81.53  E-value=0.69  Score=34.14  Aligned_cols=27  Identities=26%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             eeecCccccccCCHHHHHHHHHHhcCCCCc
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVLSLSNM  218 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H~~~~~  218 (345)
                      ...|-+||+.|.   .|.+|++.+|+....
T Consensus        21 ~iiClecGK~fK---~LkRHL~~~hgltpe   47 (87)
T 2jsp_A           21 HIVCLECGGSFK---SLKRHLTTHHSMTPE   47 (87)
T ss_dssp             CEECTBTCCEES---BHHHHHHHTTCSCHH
T ss_pred             ceEecccchhhH---HHHHHHHHccCCCHH
Confidence            367999999997   477999998886543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	345
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	2e-06
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	1e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	3e-05
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.001
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.004
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	2e-05
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	5e-05
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	9e-05
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	7e-04
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	7e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.001
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	0.003
d1srka_	35	g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {M	0.001
d2dlka2	36	g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692	0.001
d1sp2a_	31	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.002
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004
d1x6ea2	26	g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (	0.004

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (99), Expect = 2e-06
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 46 PHKCEHCEKEFENRRALKRHEKN-HTQEKTFPCTV 79
          P+ C+ C K F     L  H K  HT E+   C V
Sbjct: 5  PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 1e-05
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
           + C+ C K F ++    RH   H   + + C VC K FK K     H+  H
Sbjct: 3  LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 72  EKTFPCTVCLKMFKTKAQREEHIASHVTDSEFKCDQCPYVAKRIKYLRYHMKKH 125
           +K +PC  C K F  K+QR+ H++ H+    + C  C    K   +L  HMK H
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 158 PYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFS 206
            Y C+ C K F  K     H   HL +     Y C +CGK F  K    
Sbjct: 3   LYPCQ-CGKSFTHKSQRDRHMSMHLGLR---PYGCGVCGKKFKMKHHLV 47

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (75), Expect = 0.004
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 133 CEPCQEGFFSRDKLETHNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKH 181
           C+ C + F  + + + H     G +PY C  C K F  K+ L  H K H
Sbjct: 6   CQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 38.4 bits (90), Expect = 2e-05
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
             CE C + F  +  LKRH ++HT EK
Sbjct: 2  SFVCEVCTRAFARQEHLKRHYRSHTNEK 29

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (88), Expect = 5e-05
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQE 72
          P+ C  C K F     L +H++ HT E
Sbjct: 7  PYGCVECGKAFSRSSILVQHQRVHTGE 33

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (86), Expect = 9e-05
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
             C  C K F     L +H K H  +K
Sbjct: 2  KFACPECPKRFMRSDHLSKHIKTHQNKK 29

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 2e-04
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQEK 73
          P+ C HC+K F  ++ L  H K +    
Sbjct: 8  PYACSHCDKTFRQKQLLDMHFKRYHDPN 35

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 7e-04
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 45 GPHKCEHCEKEFENRRALKRHEK 67
          G H+C  C + F +   LK H +
Sbjct: 14 GLHRCLACARYFIDSTNLKTHFR 36

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (79), Expect = 7e-04
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHT 70
          P +C  C + F     L  H + HT
Sbjct: 3  PFQCRICMRNFSRSDHLTTHIRTHT 27

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 64 RHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH 97
          R E    + + + C  C K F   +   +H  +H
Sbjct: 2  RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQE 72
           +KC+ C K F +   L +H + HT E
Sbjct: 12 RYKCDECGKSFSHSSDLSKHRRTHTGE 38

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 35

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHTQE 72
          P  C  C   F  +    RH K HT  
Sbjct: 7  PFVCRICLSAFTTKANCARHLKVHTDT 33

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 47 HKCEH--CEKEFENRRALKRHEKNHTQEKTFPC 77
            C    C K F  ++ LK H K H+  + + C
Sbjct: 2  FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 46 PHKCEH--CEKEFENRRALKRHEKNHTQEK 73
          P  C    C K F     L+RH++ HT EK
Sbjct: 2  PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (75), Expect = 0.004
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 46 PHKCEHCEKEFENRRALKRHE-KNHTQE 72
          P++C  C   F     +K H  + HT+ 
Sbjct: 8  PYECYICHARFTQSGTMKMHILQKHTEN 35

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (74), Expect = 0.004
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 46 PHKCEHCEKEFENRRALKRHEKNHT 70
          P+KC  C K F     L  H++ HT
Sbjct: 2  PYKCLECGKAFSQNSGLINHQRIHT 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	345
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.44
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.44
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.82
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.79
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.74
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.72
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.72
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.7
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.7
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.67
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.66
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.61
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.59
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.59
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.54
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.54
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.49
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.48
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.46
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.45
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.41
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.4
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.39
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.26
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.14
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.11
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.1
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.07
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.01
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.01
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.0
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.92
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.88
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.88
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.87
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.81
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.81
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.79
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.67
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.63
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.62
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.56
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.47
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.46
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.22
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.18
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.07
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.06
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.05
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.04
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.93
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.87
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.8
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.77
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.71
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.7
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.69
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.49
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.46
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.44
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.42
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.41
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.4
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.37
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.37
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.36
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.31
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.16
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.16
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.11
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.01
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.99
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.98
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.91
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.48
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	95.19
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.1
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.04
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	94.79
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.7
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	94.62
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.26
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	94.12
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.09
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.07
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.83
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.8
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.7
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.65
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.35
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.92
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.89
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	92.71
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.37
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	90.29
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	89.94
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	89.62
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	89.39
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	89.2
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.07
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	86.25
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	85.05
d1y0jb1	36	U-shaped transcription factor, different fingers {	84.79
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	84.65
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	83.6
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	83.3
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	81.62
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	81.08
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	80.08

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.7e-14  Score=97.86  Aligned_cols=53  Identities=30%  Similarity=0.492  Sum_probs=36.6

Q ss_pred             CCCCCCcchhhccCCHHHHHHHHhhhCCCCcCceeecCccccccCCHHHHHHHHHHh
Q psy4572         156 AQPYQCETCRKLFLSKYSLFTHNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       156 ~k~y~C~~Cgk~F~s~s~L~~H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      ++||+|+ ||+.|.....|..|+++|+   +++||.|++||+.|.+...|.+|++.|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht---~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL---GLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS---CCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc---cccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            4667773 7777777777777777776   556777777777777777777776543

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.7e-14  Score=96.07  Aligned_cols=53  Identities=32%  Similarity=0.573  Sum_probs=38.5

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCCCCceeccccccccCCHHHHHHHHHhc
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHIASH   97 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h   97 (345)
                      +++|+| .||+.|.....|..|+++|++++||.|++|++.|.....|..|+++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            456777 37777777777777777777777777777777777777777777654

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.3e-10  Score=69.21  Aligned_cols=35  Identities=34%  Similarity=0.647  Sum_probs=20.2

Q ss_pred             CCceeccccccccCCHHHHHHHHH-HcCCCCceecc
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEK-NHTQEKTFPCT   78 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~-~h~~~k~~~C~   78 (345)
                      ++||+|..||+.|.....|++|++ +|++++||+|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            355666666666666666666654 45566666554

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.5e-09  Score=67.41  Aligned_cols=37  Identities=27%  Similarity=0.523  Sum_probs=28.4

Q ss_pred             CCCceeccccccccCCHHHHHHHHH-hcCCCCCccCCC
Q psy4572          71 QEKTFPCTVCLKMFKTKAQREEHIA-SHVTDSEFKCDQ  107 (345)
Q Consensus        71 ~~k~~~C~~C~k~F~~~~~L~~H~~-~h~~~k~~~C~~  107 (345)
                      .++||+|.+||+.|....+|.+|++ +|.+++||.|+.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            3577888888888888888888875 588888888763

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.5e-10  Score=70.35  Aligned_cols=35  Identities=20%  Similarity=0.446  Sum_probs=19.2

Q ss_pred             HHHHcCCCCceeccccccccCCHHHHHHHHHhcCC
Q psy4572          65 HEKNHTQEKTFPCTVCLKMFKTKAQREEHIASHVT   99 (345)
Q Consensus        65 H~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~   99 (345)
                      |+++|++++||+|++||+.|....+|..|+++|+|
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            44455555555555555555555555555555554

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6.8e-10  Score=68.98  Aligned_cols=34  Identities=24%  Similarity=0.525  Sum_probs=22.9

Q ss_pred             HHHHhcCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         149 HNIAKHGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       149 H~~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      |+++|.+++||.|++|||+|...+.|..|+++|+
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            5556666666666666666666666666666665

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.8e-09  Score=63.10  Aligned_cols=31  Identities=29%  Similarity=0.509  Sum_probs=18.1

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHHhcCC
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVT   99 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~   99 (345)
                      |++++||+|.+|++.|.....|..|+++|+|
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            4555555555555555555555555555554

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=1.5e-09  Score=66.88  Aligned_cols=31  Identities=32%  Similarity=0.686  Sum_probs=15.4

Q ss_pred             HHhcCCCCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         151 IAKHGAQPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       151 ~~hh~~k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      +.|+|++||+|++|++.|.+.+.|.+|+++|
T Consensus         4 R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             STTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            4444455555555555555555555554444

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.1e-09  Score=64.47  Aligned_cols=33  Identities=30%  Similarity=0.531  Sum_probs=20.8

Q ss_pred             HcCCCCceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          68 NHTQEKTFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        68 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      +|+|++||+|.+|++.|.....|..|+++|+++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            466666666666666666666666666666543

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1.9e-09  Score=66.48  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=31.8

Q ss_pred             HHhhhCCCCcCceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         177 HNKKHLPIEERLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       177 H~~~H~~~~~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      |.|.|+   +++||+|+.|++.|.+++.|.+|++.|-.
T Consensus         2 h~R~HT---geKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGST---GIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTC---CSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccC---CccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            678887   88999999999999999999999998754

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5.4e-09  Score=63.92  Aligned_cols=29  Identities=24%  Similarity=0.449  Sum_probs=17.4

Q ss_pred             cCceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         186 ERLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       186 ~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      +++||+|++||+.|.+++.|.+|++.|++
T Consensus         5 gekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           5 GEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            55566666666666666666666665553

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.3e-09  Score=63.90  Aligned_cols=29  Identities=17%  Similarity=0.430  Sum_probs=22.1

Q ss_pred             cCceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         186 ERLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       186 ~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      +++||+|++|++.|.+++.|.+|++.+|.
T Consensus         5 gekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           5 GEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CCCCEeCCCCcccccchHHHHHHcccccC
Confidence            66777777777777777777777777765

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=1.3e-08  Score=61.52  Aligned_cols=31  Identities=32%  Similarity=0.713  Sum_probs=18.5

Q ss_pred             cCCCCceeccccccccCCHHHHHHHHHhcCC
Q psy4572          69 HTQEKTFPCTVCLKMFKTKAQREEHIASHVT   99 (345)
Q Consensus        69 h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~   99 (345)
                      |+|++||+|++|++.|..+.+|++|+++|.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            4556666666666666666666666665544

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1e-08  Score=62.64  Aligned_cols=32  Identities=28%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             HcCCCCceeccccccccCCHHHHHHHHHhcCC
Q psy4572          68 NHTQEKTFPCTVCLKMFKTKAQREEHIASHVT   99 (345)
Q Consensus        68 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~h~~   99 (345)
                      +|+|++||+|++|++.|....+|+.|++.+++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            46666666666666666666666666554443

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.4e-08  Score=60.52  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=17.5

Q ss_pred             cCCCCCccCCCCcccccCHHHHHHHHHHhcC
Q psy4572          97 HVTDSEFKCDQCPYVAKRIKYLRYHMKKHRK  127 (345)
Q Consensus        97 h~~~k~~~C~~C~~~f~~~~~L~~H~~~h~~  127 (345)
                      |++++||.|..||+.|.....|..|+++|.+
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            4555555555555555555555555555554

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.6e-08  Score=57.89  Aligned_cols=27  Identities=15%  Similarity=0.416  Sum_probs=18.0

Q ss_pred             CceeecCccccccCCHHHHHHHHHHhc
Q psy4572         187 RLHYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       187 ~k~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      +|||+|++|++.|.+++.|.+|++.|-
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            356777777777777777777766663

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.54  E-value=2e-08  Score=58.13  Aligned_cols=27  Identities=41%  Similarity=0.812  Sum_probs=15.7

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      ||+|++|++.|...+.|.+|+++|+|+
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             cCCCCCCCCCCCCchHcccccCcccCC
Confidence            455555555555555555555555554

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=1.1e-08  Score=61.79  Aligned_cols=29  Identities=31%  Similarity=0.604  Sum_probs=13.6

Q ss_pred             cCCCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         154 HGAQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       154 h~~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      +|++||+|++|++.|.+.+.|.+|+++|+
T Consensus         3 TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           3 SGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             SCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCccccCCCCCCcccChHHHHHHccccC
Confidence            34444444444444444444444444443

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.49  E-value=3.5e-08  Score=57.07  Aligned_cols=29  Identities=28%  Similarity=0.702  Sum_probs=18.3

Q ss_pred             CceeccccccccCCHHHHHHHHHhcCCCC
Q psy4572          73 KTFPCTVCLKMFKTKAQREEHIASHVTDS  101 (345)
Q Consensus        73 k~~~C~~C~k~F~~~~~L~~H~~~h~~~k  101 (345)
                      +||.|++|++.|.....|.+|+++|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            35666666666666666666666666553

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=2.6e-08  Score=57.00  Aligned_cols=26  Identities=31%  Similarity=0.715  Sum_probs=13.7

Q ss_pred             CceeccccccccCCHHHHHHHHHHcC
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHT   70 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~   70 (345)
                      +||+|+.|++.|...+.|.+|+++|+
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCCcc
Confidence            44555555555555555555555554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.4e-08  Score=55.16  Aligned_cols=25  Identities=24%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             ceeecCccccccCCHHHHHHHHHHh
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      |||+|+.|||.|.+++.|.+|.+.|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            4788888888888888888887766

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.4e-08  Score=60.08  Aligned_cols=32  Identities=31%  Similarity=0.746  Sum_probs=18.1

Q ss_pred             eeccc--cccccCCHHHHHHHHHHcCCCCceecc
Q psy4572          47 HKCEH--CEKEFENRRALKRHEKNHTQEKTFPCT   78 (345)
Q Consensus        47 ~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~   78 (345)
                      |.|+.  |++.|.....|++|+++|+|++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45543  555555555555555555555555554

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.6e-08  Score=56.92  Aligned_cols=27  Identities=30%  Similarity=0.625  Sum_probs=15.8

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      ||.|++|++.|...+.|.+|+++|+|+
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CEECCcCCCeecchHHhhhhcCccCCc
Confidence            455555555555555555555555554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.8e-08  Score=55.51  Aligned_cols=25  Identities=36%  Similarity=0.836  Sum_probs=19.1

Q ss_pred             CCCCCcchhhccCCHHHHHHHHhhh
Q psy4572         157 QPYQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       157 k~y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      +||+|++|||.|...+.|.+|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            5777777777777777777777776

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=6.7e-08  Score=55.76  Aligned_cols=28  Identities=32%  Similarity=0.634  Sum_probs=16.3

Q ss_pred             CceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          73 KTFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        73 k~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      +||.|++|++.|.....|.+|+++|+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            3555666666666666666666555554

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=9e-08  Score=58.17  Aligned_cols=32  Identities=31%  Similarity=0.718  Sum_probs=22.1

Q ss_pred             eeccc--cccccCCHHHHHHHHHhcCCCCCccCC
Q psy4572          75 FPCTV--CLKMFKTKAQREEHIASHVTDSEFKCD  106 (345)
Q Consensus        75 ~~C~~--C~k~F~~~~~L~~H~~~h~~~k~~~C~  106 (345)
                      |.|+.  |++.|.....|++|+++|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            56665  777777777777777777777777765

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=3.1e-08  Score=64.15  Aligned_cols=32  Identities=38%  Similarity=0.736  Sum_probs=14.9

Q ss_pred             cCCCCceeccc--cccccCCHHHHHHHHHhcCCC
Q psy4572          69 HTQEKTFPCTV--CLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        69 h~~~k~~~C~~--C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      |.+++||.|++  |++.|.....|..|+++|+|+
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            44444444443  444444444444444444443

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6.5e-07  Score=51.86  Aligned_cols=27  Identities=44%  Similarity=0.886  Sum_probs=15.0

Q ss_pred             ceeccc--cccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCEH--CEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~~--C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      ||+|+.  |++.|...+.|++|+++|+||
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            455554  555555555555555555543

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6.3e-07  Score=51.97  Aligned_cols=27  Identities=33%  Similarity=0.688  Sum_probs=15.0

Q ss_pred             ceeccc--cccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCEH--CEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~~--C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      ||+|+.  |++.|...+.|..|+++|+||
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CccCCCCCCCceECcHHHcCccccccCCC
Confidence            455544  555555555555555555543

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=9.1e-07  Score=51.21  Aligned_cols=28  Identities=29%  Similarity=0.576  Sum_probs=16.6

Q ss_pred             Cceeccc--cccccCCHHHHHHHHHhcCCC
Q psy4572          73 KTFPCTV--CLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        73 k~~~C~~--C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      +||.|++  |++.|.....|++|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            3566655  666666666666666666553

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=9.7e-07  Score=51.16  Aligned_cols=28  Identities=36%  Similarity=0.618  Sum_probs=18.0

Q ss_pred             Cceeccc--cccccCCHHHHHHHHHhcCCC
Q psy4572          73 KTFPCTV--CLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        73 k~~~C~~--C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      +||.|++  |++.|.....|..|+++|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4566665  666666666666666666553

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.3e-06  Score=51.03  Aligned_cols=27  Identities=41%  Similarity=0.839  Sum_probs=14.6

Q ss_pred             ceecc--ccccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCE--HCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~--~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      ||.|+  .|++.|...+.|.+|+++|+|+
T Consensus         2 pf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             cCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            45553  3555555555555555555554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=7.9e-07  Score=57.31  Aligned_cols=34  Identities=24%  Similarity=0.577  Sum_probs=31.2

Q ss_pred             CCCCCCceeccc--cccccCCHHHHHHHHHHcCCCC
Q psy4572          40 PQKLDGPHKCEH--CEKEFENRRALKRHEKNHTQEK   73 (345)
Q Consensus        40 ~~~~~~~~~C~~--C~k~F~~~~~L~~H~~~h~~~k   73 (345)
                      .+.+++||+|+.  |++.|...+.|..|+++|+|++
T Consensus        12 ~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            377889999977  9999999999999999999985

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.7e-06  Score=50.53  Aligned_cols=29  Identities=28%  Similarity=0.555  Sum_probs=17.6

Q ss_pred             Cceeccc--cccccCCHHHHHHHHHhcCCCC
Q psy4572          73 KTFPCTV--CLKMFKTKAQREEHIASHVTDS  101 (345)
Q Consensus        73 k~~~C~~--C~k~F~~~~~L~~H~~~h~~~k  101 (345)
                      +||.|+.  |++.|....+|.+|+++|+|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            3566643  6666666666666666666553

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=1.9e-06  Score=50.60  Aligned_cols=27  Identities=37%  Similarity=0.875  Sum_probs=16.2

Q ss_pred             CCCCCCcc--hhhccCCHHHHHHHHhhhC
Q psy4572         156 AQPYQCET--CRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       156 ~k~y~C~~--Cgk~F~s~s~L~~H~~~H~  182 (345)
                      ++||.|+.  |++.|.+.++|.+|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            35566655  6666666666666666664

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=3e-06  Score=46.52  Aligned_cols=27  Identities=19%  Similarity=0.529  Sum_probs=22.1

Q ss_pred             CceeecCccccccCCHHHHHHHHHHhc
Q psy4572         187 RLHYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       187 ~k~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      ++||.|++||+.|.+.....+|.+.|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            468888888888888888888887663

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=3.4e-06  Score=49.49  Aligned_cols=28  Identities=18%  Similarity=0.377  Sum_probs=19.4

Q ss_pred             CceeecCc--cccccCCHHHHHHHHHHhcC
Q psy4572         187 RLHYQCEL--CGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       187 ~k~y~C~~--Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      ++||.|++  ||+.|.+.+.|.+|++.|-.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            35677766  77777777777777766654

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=2.8e-06  Score=48.65  Aligned_cols=26  Identities=15%  Similarity=0.410  Sum_probs=16.2

Q ss_pred             ceeecCc--cccccCCHHHHHHHHHHhc
Q psy4572         188 LHYQCEL--CGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       188 k~y~C~~--Cgk~F~~~~~L~~H~~~~H  213 (345)
                      |||.|++  |++.|.+.+.|.+|++.|-
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            3566655  6666666666666666553

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.4e-06  Score=46.53  Aligned_cols=28  Identities=25%  Similarity=0.453  Sum_probs=22.3

Q ss_pred             CceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         187 RLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       187 ~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      ++||.|++|++.|.+++.+..|.+.|-+
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            3678888888888888888888887765

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.1e-06  Score=48.68  Aligned_cols=25  Identities=20%  Similarity=0.469  Sum_probs=16.2

Q ss_pred             ceeecCc--cccccCCHHHHHHHHHHh
Q psy4572         188 LHYQCEL--CGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       188 k~y~C~~--Cgk~F~~~~~L~~H~~~~  212 (345)
                      +||.|+.  ||+.|.+.+.|.+|++.|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            3566655  666666666666666655

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.6e-06  Score=48.31  Aligned_cols=26  Identities=35%  Similarity=0.646  Sum_probs=20.0

Q ss_pred             CCCCCcc--hhhccCCHHHHHHHHhhhC
Q psy4572         157 QPYQCET--CRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       157 k~y~C~~--Cgk~F~s~s~L~~H~~~H~  182 (345)
                      +||.|+.  |||.|.+.++|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5777866  8888888888888888774

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=3.8e-06  Score=48.11  Aligned_cols=25  Identities=36%  Similarity=0.776  Sum_probs=13.6

Q ss_pred             ceeccc--cccccCCHHHHHHHHHHcC
Q psy4572          46 PHKCEH--CEKEFENRRALKRHEKNHT   70 (345)
Q Consensus        46 ~~~C~~--C~k~F~~~~~L~~H~~~h~   70 (345)
                      ||+|+.  |++.|...+.|++|+++|+
T Consensus         2 p~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           2 PYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CeECCCCCCCcEECchhHhhhhcCccC
Confidence            455544  5555555555555555554

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=6.9e-06  Score=43.61  Aligned_cols=24  Identities=42%  Similarity=0.603  Sum_probs=12.2

Q ss_pred             CCCcchhhccCCHHHHHHHHhhhC
Q psy4572         159 YQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       159 y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      .+|+.|++.|+++..|..|++.|+
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CccchhhhHhcchhHHHHHhhccC
Confidence            345555555555555555555443

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.5e-05  Score=42.31  Aligned_cols=25  Identities=28%  Similarity=0.558  Sum_probs=19.0

Q ss_pred             eeecCccccccCCHHHHHHHHHHhc
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      |.+|+.|++.|++++.|..|++.|-
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            3568888888888888888877664

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=1.1e-05  Score=44.19  Aligned_cols=27  Identities=30%  Similarity=0.663  Sum_probs=19.2

Q ss_pred             CCCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         156 AQPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       156 ~k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      ++||.|+.||+.|.......+|.+.|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            467777777777777777777777663

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.4e-05  Score=43.47  Aligned_cols=27  Identities=22%  Similarity=0.470  Sum_probs=22.2

Q ss_pred             ceeecCc--cccccCCHHHHHHHHHHhcC
Q psy4572         188 LHYQCEL--CGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       188 k~y~C~~--Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      |||.|.+  |+++++..++|++|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4788876  88888888888888888875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=3.7e-05  Score=42.73  Aligned_cols=24  Identities=38%  Similarity=0.706  Sum_probs=9.3

Q ss_pred             ceeccccccccCCHHHHHHHHHhc
Q psy4572          74 TFPCTVCLKMFKTKAQREEHIASH   97 (345)
Q Consensus        74 ~~~C~~C~k~F~~~~~L~~H~~~h   97 (345)
                      ||.|++|+..|..+..+..|.+.|
T Consensus         3 p~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           3 PYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CcccchHHHHhhccccceEeeecc
Confidence            333333333333333333333333

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.3e-05  Score=43.92  Aligned_cols=31  Identities=35%  Similarity=0.639  Sum_probs=20.1

Q ss_pred             CceeccccccccCCHHHHHHHHHHcCCCCce
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHTQEKTF   75 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~   75 (345)
                      +...|..||+.|.+...|.+|...|++++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            3456666666666666666666666666665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00011  Score=41.75  Aligned_cols=30  Identities=23%  Similarity=0.556  Sum_probs=19.3

Q ss_pred             ceeccccccccCCHHHHHHHHHhcCCCCCc
Q psy4572          74 TFPCTVCLKMFKTKAQREEHIASHVTDSEF  103 (345)
Q Consensus        74 ~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~  103 (345)
                      ...|..||+.|.....|.+|...|.+++||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            355666666666666666666666666665

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00013  Score=43.82  Aligned_cols=26  Identities=23%  Similarity=0.505  Sum_probs=22.2

Q ss_pred             cCceeecCccccccCCHHHHHHHHHH
Q psy4572         186 ERLHYQCELCGKSFNNKQTFSLSNMY  211 (345)
Q Consensus       186 ~~k~y~C~~Cgk~F~~~~~L~~H~~~  211 (345)
                      +-|||.|.+|+|.|.+++.+.+|...
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhh
Confidence            45789999999999999999999643

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00016  Score=39.20  Aligned_cols=27  Identities=33%  Similarity=0.578  Sum_probs=14.4

Q ss_pred             CceeccccccccCCHHHHHHHHHHcCC
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      +||+|..|...-.+.+.|..|++.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            455555555555555555555555544

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.0002  Score=38.09  Aligned_cols=26  Identities=42%  Similarity=0.793  Sum_probs=17.5

Q ss_pred             eccccccccCCHHHHHHHHHHcCCCC
Q psy4572          48 KCEHCEKEFENRRALKRHEKNHTQEK   73 (345)
Q Consensus        48 ~C~~C~k~F~~~~~L~~H~~~h~~~k   73 (345)
                      +|+.|.+.|.++.-|+.|.+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            56677777777777777777666653

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.05  E-value=0.00013  Score=40.86  Aligned_cols=26  Identities=23%  Similarity=0.575  Sum_probs=23.4

Q ss_pred             eeecCccccccCCHHHHHHHHHHhcC
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      ||.|.+|++.|.+++-|.+|.+.-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            68999999999999999999888776

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00022  Score=38.62  Aligned_cols=28  Identities=29%  Similarity=0.586  Sum_probs=18.4

Q ss_pred             CCceeccccccccCCHHHHHHHHHhcCC
Q psy4572          72 EKTFPCTVCLKMFKTKAQREEHIASHVT   99 (345)
Q Consensus        72 ~k~~~C~~C~k~F~~~~~L~~H~~~h~~   99 (345)
                      ++||+|..|...-...+.|..|++.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            3566666666666666666666666655

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00033  Score=38.79  Aligned_cols=27  Identities=26%  Similarity=0.612  Sum_probs=17.8

Q ss_pred             Cceeccc--cccccCCHHHHHHHHHHcCC
Q psy4572          45 GPHKCEH--CEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        45 ~~~~C~~--C~k~F~~~~~L~~H~~~h~~   71 (345)
                      +||.|..  |++.|...+.|++|++.+||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            3566754  77777777777777776554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00029  Score=38.56  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=20.7

Q ss_pred             ceeecCccccccCCHHHHHHHHHHhcCC
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      +||+|..|.......++|..|++..|+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            4677777777777777777777777764

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0004  Score=37.80  Aligned_cols=26  Identities=31%  Similarity=0.539  Sum_probs=19.8

Q ss_pred             eeccccccccCCHHHHHHHHHHcCCC
Q psy4572          47 HKCEHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        47 ~~C~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      |.|+.|+......+.|+.|++.|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            67777777777777777777777765

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00042  Score=37.35  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=9.4

Q ss_pred             ccccccccCCHHHHHHHHHhcC
Q psy4572          77 CTVCLKMFKTKAQREEHIASHV   98 (345)
Q Consensus        77 C~~C~k~F~~~~~L~~H~~~h~   98 (345)
                      |.+||+.|...+.|++|+..|+
T Consensus         5 c~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           5 CAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTS
T ss_pred             HHHHhHHHHHHHHHHHHhhccc
Confidence            4444444444444444444443

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.77  E-value=0.00051  Score=37.27  Aligned_cols=25  Identities=24%  Similarity=0.487  Sum_probs=19.6

Q ss_pred             ceeecCc--cccccCCHHHHHHHHHHh
Q psy4572         188 LHYQCEL--CGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       188 k~y~C~~--Cgk~F~~~~~L~~H~~~~  212 (345)
                      .||+|+.  |++.|...+.|++|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            3688865  888888888888887765

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.71  E-value=0.00064  Score=36.07  Aligned_cols=26  Identities=27%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             eccccccccCCHHHHHHHHHhcCCCC
Q psy4572          76 PCTVCLKMFKTKAQREEHIASHVTDS  101 (345)
Q Consensus        76 ~C~~C~k~F~~~~~L~~H~~~h~~~k  101 (345)
                      +|+.|.+.|.++.-|+.|-+.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57778888888887888877777763

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00045  Score=37.22  Aligned_cols=27  Identities=44%  Similarity=0.740  Sum_probs=24.6

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      .+.|..||+.|...+.|++|+..|+++
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHhhcccCC
Confidence            368999999999999999999999875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.69  E-value=0.00067  Score=40.29  Aligned_cols=28  Identities=29%  Similarity=0.643  Sum_probs=20.7

Q ss_pred             CceeccccccccCCHHHHHHHHHHcCCC
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      +.|+|..|++.|.+..+|-.|++.|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCCCCCccCCcccccchHhhhcch
Confidence            4577777777777777777777777554

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.49  E-value=0.00055  Score=35.74  Aligned_cols=23  Identities=35%  Similarity=0.830  Sum_probs=11.3

Q ss_pred             CCCcchhhccCCHHHHHHHHhhh
Q psy4572         159 YQCETCRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       159 y~C~~Cgk~F~s~s~L~~H~~~H  181 (345)
                      |+|..|.++|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            34455555555555555554444

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0015  Score=35.52  Aligned_cols=23  Identities=30%  Similarity=0.700  Sum_probs=9.4

Q ss_pred             cCCCCcccccCHHHHHHHHHHhc
Q psy4572         104 KCDQCPYVAKRIKYLRYHMKKHR  126 (345)
Q Consensus       104 ~C~~C~~~f~~~~~L~~H~~~h~  126 (345)
                      .|+.|+.....++-|+.|++.|+
T Consensus         3 vC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           3 ICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             cccccCcccCCHHHHHHHHHHhc
Confidence            34444444444444444444443

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00097  Score=35.75  Aligned_cols=26  Identities=12%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             ceeecCccccccCCHHHHHHHHHHhc
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      +||+|..|.+.-...+.|.+|++.|-
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57888888888888888888888763

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.001  Score=36.28  Aligned_cols=27  Identities=11%  Similarity=0.236  Sum_probs=23.2

Q ss_pred             ceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      +||+|..|...-.+.++|..|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            478999998888899999999888875

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.0015  Score=35.45  Aligned_cols=26  Identities=31%  Similarity=0.617  Sum_probs=15.7

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      -|.|..|...|..+-.|+.||..|+|
T Consensus         4 vftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           4 VFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             eEEeHHHHHHHHHHHhheeeeecccC
Confidence            45666666666666666666666554

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00058  Score=40.89  Aligned_cols=27  Identities=33%  Similarity=0.766  Sum_probs=23.1

Q ss_pred             cCCCCCCCcchhhccCCHHHHHHHHhh
Q psy4572         154 HGAQPYQCETCRKLFLSKYSLFTHNKK  180 (345)
Q Consensus       154 h~~k~y~C~~Cgk~F~s~s~L~~H~~~  180 (345)
                      +|-+||.|..|+|.|-++.++.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            367899999999999999999999654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.37  E-value=0.0014  Score=38.82  Aligned_cols=25  Identities=20%  Similarity=0.452  Sum_probs=16.9

Q ss_pred             eeecCccccccCCHHHHHHHHHHhc
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      .|+|.+|++.|.+-..|--|++.|.
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             ccCCCCCCCccCCcccccchHhhhc
Confidence            4777777777777777777765553

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0012  Score=35.86  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=15.7

Q ss_pred             eeecCccccccCCHHHHHHHHHHh
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      ||.|..|...|.++.+|..|++..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            466666766676677776666543

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0015  Score=34.99  Aligned_cols=26  Identities=27%  Similarity=0.650  Sum_probs=17.8

Q ss_pred             CceeccccccccCCHHHHHHHHHHcC
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEKNHT   70 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~~h~   70 (345)
                      +||+|..|+..-...+.|..|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            46677777777777777777777664

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.31  E-value=0.001  Score=34.68  Aligned_cols=24  Identities=33%  Similarity=0.624  Sum_probs=20.0

Q ss_pred             eecCccccccCCHHHHHHHHHHhc
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      |+|..|.++|-.++.|.+|.+.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            678889999999999999887664

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.002  Score=38.00  Aligned_cols=28  Identities=18%  Similarity=0.466  Sum_probs=23.6

Q ss_pred             cCceeec--CccccccCCHHHHHHHHHHhc
Q psy4572         186 ERLHYQC--ELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       186 ~~k~y~C--~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      .+|||.|  +-|+.+|.+.+.|..|.+.|-
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            4789999  669999999999999988774

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0022  Score=34.80  Aligned_cols=23  Identities=39%  Similarity=0.683  Sum_probs=14.0

Q ss_pred             ceeccccccccCCHHHHHHHHHh
Q psy4572          74 TFPCTVCLKMFKTKAQREEHIAS   96 (345)
Q Consensus        74 ~~~C~~C~k~F~~~~~L~~H~~~   96 (345)
                      ||.|..|+..|.++++|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            45666666666666666666653

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.0027  Score=34.42  Aligned_cols=28  Identities=29%  Similarity=0.744  Sum_probs=20.2

Q ss_pred             CceeccccccccCCHHHHHHHHHhcCCC
Q psy4572          73 KTFPCTVCLKMFKTKAQREEHIASHVTD  100 (345)
Q Consensus        73 k~~~C~~C~k~F~~~~~L~~H~~~h~~~  100 (345)
                      .-|.|..|...|..+-.|+.|+..|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            4477777777777777777777777653

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.01  E-value=0.003  Score=33.00  Aligned_cols=24  Identities=25%  Similarity=0.574  Sum_probs=21.2

Q ss_pred             eecCccccccCCHHHHHHHHHHhc
Q psy4572         190 YQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       190 y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      |.|+.|-+.|++++++..|.+..|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            789999999999999999988776

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0024  Score=34.84  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=16.6

Q ss_pred             CCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         157 QPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       157 k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      +||+|..|.......++|+.|+++.|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            45666666666666666666666655

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.0027  Score=33.04  Aligned_cols=24  Identities=21%  Similarity=0.577  Sum_probs=19.9

Q ss_pred             eeecCccccccCCHHHHHHHHHHh
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      ||+|..|.+.|.++..|..|+..-
T Consensus         2 pykcsscsqqfmqkkdlqshmikl   25 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIKL   25 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhc
Confidence            688888999998888888887653

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.91  E-value=0.0029  Score=34.23  Aligned_cols=24  Identities=54%  Similarity=1.005  Sum_probs=13.4

Q ss_pred             ceeccc--cccccCCHHHHHHHHHHc
Q psy4572          46 PHKCEH--CEKEFENRRALKRHEKNH   69 (345)
Q Consensus        46 ~~~C~~--C~k~F~~~~~L~~H~~~h   69 (345)
                      ||+|+.  |++.|...+.|++|.+.|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            455543  556666666665555544

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.48  E-value=0.0044  Score=33.03  Aligned_cols=23  Identities=22%  Similarity=0.566  Sum_probs=17.6

Q ss_pred             eeecCccccccCCHHHHHHHHHH
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMY  211 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~  211 (345)
                      ||+|+.||+.+-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            57788888888888888887654

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0091  Score=31.86  Aligned_cols=26  Identities=15%  Similarity=0.349  Sum_probs=21.7

Q ss_pred             eeecCccccccCCHHHHHHHHHHhcC
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      .|+||.|+..-.+++.|..|++.-|.
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CccCCcchhheeehhhhhHHhhhccc
Confidence            37888888888888888888887775

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0067  Score=32.95  Aligned_cols=26  Identities=27%  Similarity=0.561  Sum_probs=15.4

Q ss_pred             ceeccccccccCCHHHHHHHHHHcCC
Q psy4572          46 PHKCEHCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      ||+|..|.......+.|..|++.-|+
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            56666666666666666666655443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.04  E-value=0.0057  Score=33.19  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=8.3

Q ss_pred             cccccCCHHHHHHHHHhcC
Q psy4572          80 CLKMFKTKAQREEHIASHV   98 (345)
Q Consensus        80 C~k~F~~~~~L~~H~~~h~   98 (345)
                      |.+.|.+...|.+|...|+
T Consensus        10 c~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CCCEESSTTHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhcccc
Confidence            4444444444444444443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.011  Score=34.65  Aligned_cols=26  Identities=35%  Similarity=0.736  Sum_probs=18.3

Q ss_pred             CCceec--cccccccCCHHHHHHHHHHc
Q psy4572          44 DGPHKC--EHCEKEFENRRALKRHEKNH   69 (345)
Q Consensus        44 ~~~~~C--~~C~k~F~~~~~L~~H~~~h   69 (345)
                      ++||.|  +-|+..|.+...|..|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            567777  45777777777777776665

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0048  Score=34.29  Aligned_cols=25  Identities=40%  Similarity=0.911  Sum_probs=12.8

Q ss_pred             ceeccc--cccccCCHHHHHHHH-HHcC
Q psy4572          46 PHKCEH--CEKEFENRRALKRHE-KNHT   70 (345)
Q Consensus        46 ~~~C~~--C~k~F~~~~~L~~H~-~~h~   70 (345)
                      ||.|+.  |.+.|.+.+.-..|+ |+|.
T Consensus         2 PY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           2 PYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccccCCChhhhhcchhhhhhhcccccc
Confidence            455543  555555555555554 4443

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=94.62  E-value=0.011  Score=32.82  Aligned_cols=22  Identities=23%  Similarity=0.662  Sum_probs=11.4

Q ss_pred             ceeccccccccCCHHHHHHHHH
Q psy4572          74 TFPCTVCLKMFKTKAQREEHIA   95 (345)
Q Consensus        74 ~~~C~~C~k~F~~~~~L~~H~~   95 (345)
                      ||.|.+|++.|..+.-+.+|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~q   22 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQ   22 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT
T ss_pred             CcccccccchhhHHHHHHHHHH
Confidence            3555555555555555555544

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.015  Score=35.89  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=21.9

Q ss_pred             ceeecCccccccCCHHHHHHHHHHhc
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      ..|.|..|||.|+....|++|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            35889999999999999999976653

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.024  Score=32.14  Aligned_cols=27  Identities=22%  Similarity=0.512  Sum_probs=20.1

Q ss_pred             eeecCccccccCCHHHHHHHHHHhcCC
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVLSL  215 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H~~  215 (345)
                      .|.|..|||.|.++..+.+|....-+.
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            377888888888888888887766553

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.09  E-value=0.017  Score=30.69  Aligned_cols=23  Identities=30%  Similarity=0.885  Sum_probs=16.9

Q ss_pred             CCCCcchhhccCCHHHHHHHHhh
Q psy4572         158 PYQCETCRKLFLSKYSLFTHNKK  180 (345)
Q Consensus       158 ~y~C~~Cgk~F~s~s~L~~H~~~  180 (345)
                      ||+|..||+.+-.+.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            57777888877777777777543

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.0082  Score=33.33  Aligned_cols=26  Identities=27%  Similarity=0.448  Sum_probs=18.7

Q ss_pred             ceeecCc--cccccCCHHHHHHHHHHhc
Q psy4572         188 LHYQCEL--CGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       188 k~y~C~~--Cgk~F~~~~~L~~H~~~~H  213 (345)
                      +||.|+.  |.|.|+..+.-.+|....|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTH   28 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTH   28 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTT
T ss_pred             CCccccCCChhhhhcchhhhhhhccccc
Confidence            4677766  8888888888888864444

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.83  E-value=0.018  Score=31.20  Aligned_cols=20  Identities=35%  Similarity=0.795  Sum_probs=9.6

Q ss_pred             CCCCcCCHHHHHHHHHHhcC
Q psy4572         136 CQEGFFSRDKLETHNIAKHG  155 (345)
Q Consensus       136 C~k~F~~~~~l~~H~~~hh~  155 (345)
                      |.+.|.+...|.+|..+|+|
T Consensus        10 c~kgf~tlhhltrhs~thtg   29 (30)
T d1tf3a2          10 CEKGFTSLHHLTRHSLTHTG   29 (30)
T ss_dssp             CCCEESSTTHHHHHHHHHHT
T ss_pred             ccccchhhhhhhhhhccccC
Confidence            44444444444444444443

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.80  E-value=0.027  Score=29.24  Aligned_cols=22  Identities=32%  Similarity=0.828  Sum_probs=13.1

Q ss_pred             eeccccccccCCHHHHHHHHHh
Q psy4572          75 FPCTVCLKMFKTKAQREEHIAS   96 (345)
Q Consensus        75 ~~C~~C~k~F~~~~~L~~H~~~   96 (345)
                      |.|+.|-+.|+++.++..|.+.
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            4566666666666666666543

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.029  Score=29.05  Aligned_cols=22  Identities=32%  Similarity=0.803  Sum_probs=13.9

Q ss_pred             ceeccccccccCCHHHHHHHHH
Q psy4572          46 PHKCEHCEKEFENRRALKRHEK   67 (345)
Q Consensus        46 ~~~C~~C~k~F~~~~~L~~H~~   67 (345)
                      ||+|..|...|-.+..|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            4666666666666666666654

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.023  Score=30.36  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=16.3

Q ss_pred             eeecCccccccCCHHHHHHHHHHhc
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      |-+|+.|.++.+++..|+.|.+.|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            3466777777777777777766554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.034  Score=29.58  Aligned_cols=23  Identities=22%  Similarity=0.612  Sum_probs=15.7

Q ss_pred             eeccccccccCCHHHHHHHHHHc
Q psy4572          47 HKCEHCEKEFENRRALKRHEKNH   69 (345)
Q Consensus        47 ~~C~~C~k~F~~~~~L~~H~~~h   69 (345)
                      |+||.|+.....++.|+.|++.-
T Consensus         3 ~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHT
T ss_pred             ccCCcchhheeehhhhhHHhhhc
Confidence            66777777777777777776653

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.024  Score=32.15  Aligned_cols=26  Identities=19%  Similarity=0.508  Sum_probs=19.7

Q ss_pred             CCCCcchhhccCCHHHHHHHHhhhCC
Q psy4572         158 PYQCETCRKLFLSKYSLFTHNKKHLP  183 (345)
Q Consensus       158 ~y~C~~Cgk~F~s~s~L~~H~~~H~~  183 (345)
                      .|.|..|||+|.++..+.+|.....+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            46788888888888888888776654

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.049  Score=29.02  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=12.4

Q ss_pred             eeccccccccCCHHHHHHHHHhc
Q psy4572          75 FPCTVCLKMFKTKAQREEHIASH   97 (345)
Q Consensus        75 ~~C~~C~k~F~~~~~L~~H~~~h   97 (345)
                      -+|+.|.....++..|+.|.+.|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            34555555555555555555554

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.031  Score=34.38  Aligned_cols=26  Identities=27%  Similarity=0.459  Sum_probs=21.6

Q ss_pred             CCCCCcchhhccCCHHHHHHHHhhhC
Q psy4572         157 QPYQCETCRKLFLSKYSLFTHNKKHL  182 (345)
Q Consensus       157 k~y~C~~Cgk~F~s~s~L~~H~~~H~  182 (345)
                      .-|.|..|||.|.....|+.|...|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            34779999999999999999988874

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.37  E-value=0.071  Score=29.23  Aligned_cols=27  Identities=26%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             ceec--cccccccCCHHHHHHHHHHcCCC
Q psy4572          46 PHKC--EHCEKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        46 ~~~C--~~C~k~F~~~~~L~~H~~~h~~~   72 (345)
                      .|.|  +.|+..|.....|+.|+..|+|+
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            4677  45777777777777777777664

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.14  Score=27.49  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=11.5

Q ss_pred             eeccccccccCCHHHHHHHHHh
Q psy4572          75 FPCTVCLKMFKTKAQREEHIAS   96 (345)
Q Consensus        75 ~~C~~C~k~F~~~~~L~~H~~~   96 (345)
                      |.|..|++...+...++-|...
T Consensus         3 ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEee
Confidence            4555555555555555555443

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.94  E-value=0.12  Score=29.20  Aligned_cols=29  Identities=14%  Similarity=0.465  Sum_probs=23.5

Q ss_pred             cCceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         186 ERLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       186 ~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      ++..|.|.+|.+.++..+++-+|...-|.
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk   33 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHK   33 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhcc
Confidence            45578888898888888888888877765

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.12  Score=34.03  Aligned_cols=38  Identities=26%  Similarity=0.466  Sum_probs=24.9

Q ss_pred             CCCceeccccccccCCHHHHHHHHHHcCCCCceeccccccc
Q psy4572          43 LDGPHKCEHCEKEFENRRALKRHEKNHTQEKTFPCTVCLKM   83 (345)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k~~~C~~C~k~   83 (345)
                      ....|.||.|++.|......+.   .-.....|.|..|+..
T Consensus        11 ~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          11 NRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             cCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            3456888888888887655543   3333455888888754

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.39  E-value=0.12  Score=27.71  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=17.7

Q ss_pred             CccccccCCHHHHHHHHHHhc
Q psy4572         193 ELCGKSFNNKQTFSLSNMYVL  213 (345)
Q Consensus       193 ~~Cgk~F~~~~~L~~H~~~~H  213 (345)
                      +.||+.|+++..|..|.++.|
T Consensus         6 ~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHGG
T ss_pred             CCchhhhccHHHHHhHHHHHH
Confidence            458999999999998888776

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.15  Score=27.43  Aligned_cols=26  Identities=19%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             eeecCccccccCCHHHHHHHHHHhcC
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      .|.|..||+...+...++.|...-|+
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            36788888888888888888776664

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.07  E-value=0.074  Score=29.77  Aligned_cols=24  Identities=25%  Similarity=0.647  Sum_probs=17.1

Q ss_pred             eeecCccccccCCHHHHHHHHHHh
Q psy4572         189 HYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       189 ~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      .|.|+-||-.|++.+.|..|..+-
T Consensus         8 rf~c~pcgirfss~stleahqtyy   31 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAYY   31 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTTT
T ss_pred             ceeccccceeecChhHHHhhhhee
Confidence            477777777777777777776543

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.25  E-value=0.29  Score=29.84  Aligned_cols=29  Identities=7%  Similarity=0.087  Sum_probs=23.9

Q ss_pred             cCceeecCccccccCCHHHHHHHHHHhcC
Q psy4572         186 ERLHYQCELCGKSFNNKQTFSLSNMYVLS  214 (345)
Q Consensus       186 ~~k~y~C~~Cgk~F~~~~~L~~H~~~~H~  214 (345)
                      .+.|-.|++|+....+..+|++|+..-|-
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            35678899999999999999999876653

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=85.05  E-value=0.86  Score=27.62  Aligned_cols=28  Identities=25%  Similarity=0.485  Sum_probs=22.1

Q ss_pred             CCceeccccccccCCHHHHHHHHHHcCC
Q psy4572          44 DGPHKCEHCEKEFENRRALKRHEKNHTQ   71 (345)
Q Consensus        44 ~~~~~C~~C~k~F~~~~~L~~H~~~h~~   71 (345)
                      +.|-.|++|+........|++|+..-|-
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~hf   49 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            4577899999888888888888876443

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.79  E-value=0.27  Score=27.38  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=17.2

Q ss_pred             CceeccccccccCCHHHHHHHHH
Q psy4572          45 GPHKCEHCEKEFENRRALKRHEK   67 (345)
Q Consensus        45 ~~~~C~~C~k~F~~~~~L~~H~~   67 (345)
                      ..|.|+-||-.|.+.+.|..|+.
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            34778888888888888887753

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.65  E-value=0.13  Score=34.52  Aligned_cols=26  Identities=31%  Similarity=0.598  Sum_probs=21.3

Q ss_pred             CCCceeccccccccCCHHHHHHHHHH
Q psy4572          43 LDGPHKCEHCEKEFENRRALKRHEKN   68 (345)
Q Consensus        43 ~~~~~~C~~C~k~F~~~~~L~~H~~~   68 (345)
                      +.+.|.|..|++.|.+...|..|.++
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcc
Confidence            34568999999999999999988654

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.60  E-value=0.23  Score=28.18  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=16.0

Q ss_pred             ccccCCHHHHHHHHHHcCCC
Q psy4572          53 EKEFENRRALKRHEKNHTQE   72 (345)
Q Consensus        53 ~k~F~~~~~L~~H~~~h~~~   72 (345)
                      ++.|..+..|..|+|.|+||
T Consensus        14 ~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          14 LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcchhHHHHHHHHhhcCCC
Confidence            45688888888898888875

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.30  E-value=0.38  Score=25.54  Aligned_cols=18  Identities=28%  Similarity=0.593  Sum_probs=9.7

Q ss_pred             hhhccCCHHHHHHHHhhh
Q psy4572         164 CRKLFLSKYSLFTHNKKH  181 (345)
Q Consensus       164 Cgk~F~s~s~L~~H~~~H  181 (345)
                      |+|.|...+.++.|+.+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            555555555555555544

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.62  E-value=0.59  Score=24.76  Aligned_cols=17  Identities=29%  Similarity=0.755  Sum_probs=7.6

Q ss_pred             cccccCCHHHHHHHHHh
Q psy4572          80 CLKMFKTKAQREEHIAS   96 (345)
Q Consensus        80 C~k~F~~~~~L~~H~~~   96 (345)
                      |++.|...+.+++|+.+
T Consensus         9 C~K~Frd~saMRKHlht   25 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHT   25 (28)
T ss_dssp             CCCEESSHHHHHHHHGG
T ss_pred             HHHHhhchHHHHHHhhc
Confidence            44444444444444433

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=81.08  E-value=0.62  Score=25.34  Aligned_cols=26  Identities=15%  Similarity=0.520  Sum_probs=15.2

Q ss_pred             ceeccc--cccccCCHHHHHHHHHhcCC
Q psy4572          74 TFPCTV--CLKMFKTKAQREEHIASHVT   99 (345)
Q Consensus        74 ~~~C~~--C~k~F~~~~~L~~H~~~h~~   99 (345)
                      .|.|..  |+..|+....|+.|+-.|+|
T Consensus         3 ~~iCsf~dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1           3 RYICSFADCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             CEECSSGGGCCEESSHHHHHHHHHHHHC
T ss_pred             ceEeeCCCcchhhccchhhhHHhhhhcC
Confidence            355543  66666666666666665554

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.08  E-value=0.24  Score=33.11  Aligned_cols=25  Identities=12%  Similarity=0.169  Sum_probs=20.6

Q ss_pred             ceeecCccccccCCHHHHHHHHHHh
Q psy4572         188 LHYQCELCGKSFNNKQTFSLSNMYV  212 (345)
Q Consensus       188 k~y~C~~Cgk~F~~~~~L~~H~~~~  212 (345)
                      ..|.|..|++.|.+...|..|.+.-
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksK   38 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSK   38 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             CEEecccccCccCCHHHHHHHHccc
Confidence            3488999999999999999997543